GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 23:57:27 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-JH6uY/C09HBa0109D11/C09HBa0109D11.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0109D11.1, from 1 to 114526, both strands analyzed. ... started at: Tue Aug 29 00:20:01 2006 EST library file: /tmp/cxgn-bacpublish-resources-sLG2P1/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 64 EST library file: /tmp/cxgn-bacpublish-resources-sLG2P1/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 69 ******************************************************************************** EST sequence 17 +strand 783 n (File: SGN-E213196+) 1 TATATGAGAG CTATTTCTGA ACTATTTTTA GTGAAAATCT TCCCATTTGT TAGAAATAAA 61 AAAGTTTCAA GAAAGCCTAT TTTTTTTCCT ATTAGAAATA TTAATATGTC TGAATCAAAT 121 CAATATGATT CTTGTTTTGA TAGACCAAGA TTGGTTATTA AGAAAGTTTT GGCTAAACCT 181 CAAAGTGAAG GGAATGGAGC TGTTGTTAGA AGAAGCATTG GAAGGCATGA ATTGAGGAAT 241 CTTGATCCTT TCCTAATGTT GGATGAATTT TCAGTTTCTG CTCCTGCTGG TTTTCCTGAT 301 CATCCACACA GAGGTTTTGA GACAGTAACT TACATGCTAC AGGGAGCTTT TACTCATCAA 361 GATTTTGCTG GTCACAAGGG CACAATTAAT ACTGGTGATG TGCAGTGGAT GACAGCAGGA 421 AGAGGTATAA TTCATTCAGA AATGCCTGCA GGAGAAGGCA GTCAAAAGGG GTTGCAACTT 481 TGGATAAATC TCTCTTCTAA GGACAAAATG ATTGAGCCAA GGTATCAAGA ACTGCTGAAA 541 GAAGACATAC CAAGAGCAGA GAATGATGGT GTTAAAGTAA AAGTTATAGC AGGTGAAGCA 601 ATGGGAGTCC AATCCCCGGT TTACACACAA ACGCCTACAA TGTACCTCGA TTTCACCCCT 661 ACACCAACAG CTTACTATCA TNCAGCCATC CCTGAATCTT GGAAACGCTT CGTATATATA 721 GTTGAAAGGA GAAGTGTCTT CGGAATTCCG AGNTCAGGTC CTGTATCAGC TCACCATTGC 781 TTG Predicted gene structure (within gDNA segment 546 to 4298): Exon 1 1146 1369 ( 224 n); cDNA 1 224 ( 224 n); score: 1.000 Intron 1 1370 1773 ( 404 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 1774 1823 ( 50 n); cDNA 225 274 ( 50 n); score: 1.000 Intron 2 1824 2057 ( 234 n); Pd: 0.843 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 2058 2125 ( 68 n); cDNA 275 342 ( 68 n); score: 1.000 Intron 3 2126 2521 ( 396 n); Pd: 0.991 (s: 1.00), Pa: 0.947 (s: 1.00) Exon 4 2522 2584 ( 63 n); cDNA 343 405 ( 63 n); score: 1.000 Intron 4 2585 2776 ( 192 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 2777 2880 ( 104 n); cDNA 406 509 ( 104 n); score: 1.000 Intron 5 2881 3414 ( 534 n); Pd: 0.969 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 6 3415 3688 ( 274 n); cDNA 510 783 ( 274 n); score: 0.953 MATCH C09HBa0109D11.1+ SGN-E213196+ 0.983 783 1.000 C PGS_C09HBa0109D11.1+_SGN-E213196+ (1146 1369,1774 1823,2058 2125,2522 2584,2777 2880,3415 3688) Alignment (genomic DNA sequence = upper lines): TATATGAGAG CTATTTCTGA ACTATTTTTA GTGAAAATCT TCCCATTTGT TAGAAATAAA 1205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATGAGAG CTATTTCTGA ACTATTTTTA GTGAAAATCT TCCCATTTGT TAGAAATAAA 60 AAAGTTTCAA GAAAGCCTAT TTTTTTTCCT ATTAGAAATA TTAATATGTC TGAATCAAAT 1265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTCAA GAAAGCCTAT TTTTTTTCCT ATTAGAAATA TTAATATGTC TGAATCAAAT 120 CAATATGATT CTTGTTTTGA TAGACCAAGA TTGGTTATTA AGAAAGTTTT GGCTAAACCT 1325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATGATT CTTGTTTTGA TAGACCAAGA TTGGTTATTA AGAAAGTTTT GGCTAAACCT 180 CAAAGTGAAG GGAATGGAGC TGTTGTTAGA AGAAGCATTG GAAGGTAATA AAATTTGGGA 1385 |||||||||| |||||||||| |||||||||| |||||||||| |||| CAAAGTGAAG GGAATGGAGC TGTTGTTAGA AGAAGCATTG GAAG...... .......... 224 TTTTTATATT TTTCACATTT TCTTTTTGTT GATTTTAAAT TTTGTTTCTA AATTTTATGA 1445 .......... .......... .......... .......... .......... .......... 224 CTTTTTTGTC ATTTGGGTAT TTTTCATTTT GGACAGTAAA AGAAGTAACT TTAATAGGAA 1505 .......... .......... .......... .......... .......... .......... 224 ATTGTGTTTT GAAACTTTGA CCTTGATGTG TTTTCTTGGT TTCCATATTG TAAAGTCTCT 1565 .......... .......... .......... .......... .......... .......... 224 GTCTTTACGT GGTCTCGAAT AAAGTTAGCT AGTACCTGTG TTATTAGTGC GAGTTGATAA 1625 .......... .......... .......... .......... .......... .......... 224 ATATCTCGTG TAATTAGTTA AGGTGCGGAA AAGCCGCCAA TACACTACAA ATATCAAAAA 1685 .......... .......... .......... .......... .......... .......... 224 GAAAAAAAAA GTATGTGTTT GTGATTTTTT CTTTAATCTT GTTGCTTATT GAATGTGGGG 1745 .......... .......... .......... .......... .......... .......... 224 ATTTTGTTTT AAAAATTTGA TCCTGCAGGC ATGAATTGAG GAATCTTGAT CCTTTCCTAA 1805 || |||||||||| |||||||||| |||||||||| .......... .......... ........GC ATGAATTGAG GAATCTTGAT CCTTTCCTAA 256 TGTTGGATGA ATTTTCAGGT ACTGCTTTGA GTAATGTTGC TTGGATCCTC CAAAAATATT 1865 |||||||||| |||||||| TGTTGGATGA ATTTTCAG.. .......... .......... .......... .......... 274 GTTCCACATG TGTCGGATTC TCCAAAAAGC CAAAAATACA TAGCTTTTGG AGAATCTGAG 1925 .......... .......... .......... .......... .......... .......... 274 ACACACATGA CGTATTTTTG AAGAGTCCGA GCAACTTAAG TTTTGAACAT CTTACTGGAA 1985 .......... .......... .......... .......... .......... .......... 274 TATGTTGTTC ATTTTTGCTT AGTTATTTTT TGAGCCAAGA AGAGTTGATA AAGTACTGTT 2045 .......... .......... .......... .......... .......... .......... 274 TTATTGTTTC AGTTTCTGCT CCTGCTGGTT TTCCTGATCA TCCACACAGA GGTTTTGAGA 2105 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TTTCTGCT CCTGCTGGTT TTCCTGATCA TCCACACAGA GGTTTTGAGA 322 CAGTAACTTA CATGCTACAG GTAAAAACAG TTAGTTGCAC ACTTCAATCC TATATAATAA 2165 |||||||||| |||||||||| CAGTAACTTA CATGCTACAG .......... .......... .......... .......... 342 TAGTGAGGGA AAGGGCGGAC GAAGGGTGGA AAATGAAAGG CCTTTTCTTG TTCCCTAAGG 2225 .......... .......... .......... .......... .......... .......... 342 CTGTGTGTGT GCCACGACCA AACACCTGTT CGATGCTCTT TAACCTCCCA ATAATGATGG 2285 .......... .......... .......... .......... .......... .......... 342 CTCTTTTGTC TTGGTATCCT AACCATCCAA CAAAGAATAA GCAGCAAAGT GCCAAATGAC 2345 .......... .......... .......... .......... .......... .......... 342 ATGTCTTGTT GAATCCATTG AATCGTACTG AGGCAGATGT AGTGTTTACT TGAACCCAAT 2405 .......... .......... .......... .......... .......... .......... 342 ATTTTTGACA CAAAACACAA AAATAAACGC ACATCAAATT CTGAACTCAT AATTTCAAAA 2465 .......... .......... .......... .......... .......... .......... 342 GTGAAACGGG CACAGAAGAT GTTGATAATG CTAATGTTGT GTTTTCGTTT CCTTAGGGAG 2525 |||| .......... .......... .......... .......... .......... ......GGAG 346 CTTTTACTCA TCAAGATTTT GCTGGTCACA AGGGCACAAT TAATACTGGT GATGTGCAGG 2585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTTTTACTCA TCAAGATTTT GCTGGTCACA AGGGCACAAT TAATACTGGT GATGTGCAG. 405 TATAGAATAT TCAGCTCTTA ACATTTTTAC TTACAAGATA TGTAGTTCGG ATTCTCCAAA 2645 .......... .......... .......... .......... .......... .......... 405 AATGCATAAC TCTTGGAATA TCCGACACAC GTTCGACAAT GTTATTAAAG AATCCAAGCA 2705 .......... .......... .......... .......... .......... .......... 405 GCATAGCTTA TAAGAACAGA AGAGATATTT TGGTTGCTGA TTTATGTTTC TTATATTGGA 2765 .......... .......... .......... .......... .......... .......... 405 TGATATTGCA GTGGATGACA GCAGGAAGAG GTATAATTCA TTCAGAAATG CCTGCAGGAG 2825 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TGGATGACA GCAGGAAGAG GTATAATTCA TTCAGAAATG CCTGCAGGAG 454 AAGGCAGTCA AAAGGGGTTG CAACTTTGGA TAAATCTCTC TTCTAAGGAC AAAATGTAAG 2885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGGCAGTCA AAAGGGGTTG CAACTTTGGA TAAATCTCTC TTCTAAGGAC AAAAT..... 509 TTAGTCATTT AATCATTAGA AGCTTTCGGT CTTATCACTC CTTTTGACCT ATGTTGCTCG 2945 .......... .......... .......... .......... .......... .......... 509 TACTCTTTGA AAATGCTGGC ACACCCGTTT CAGATCCTCC ATAAATGCAC TATTATTTGG 3005 .......... .......... .......... .......... .......... .......... 509 AGATTCTGAC ACGTGTCTAT TGGCATTTTT AAAGAGTACC AGCAACACAA CTTTTGACTG 3065 .......... .......... .......... .......... .......... .......... 509 ACCCCATATA GATACTTTAC ACACCACTAC TTTATTGTAC TTGGCTCTAG CATATAGTAG 3125 .......... .......... .......... .......... .......... .......... 509 TAAAAAAATA ATGTTAGCTC TTATCCTACT TTTATTGTGG GGCGGGGGGT TAGGAGTATT 3185 .......... .......... .......... .......... .......... .......... 509 ACTAGTATGC AGTATAAAGA TTAATCATTC ACTTTTCTGT TTCTGCTGTG TTTTGCTAAG 3245 .......... .......... .......... .......... .......... .......... 509 CTTAATCATT CACTTTTGAC TAACTTCTCA AAATCAAGAT TTAGTTTGAA CCAATATTTT 3305 .......... .......... .......... .......... .......... .......... 509 CCCATGTTCA AGTTTATAGC CCAAAACGAA GACTTTGTGG CGAACACACG TTTGATATGT 3365 .......... .......... .......... .......... .......... .......... 509 GATTGCTTTT TCTTTTTCAA TTATTATTAA GTTCAAAGTT CAACTACAGG ATTGAGCCAA 3425 | |||||||||| .......... .......... .......... .......... .........G ATTGAGCCAA 520 GGTATCAAGA ACTGCTGAAA GAAGACATAC CAAGAGCAGA GAATGATGGT GTTAAAGTAA 3485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATCAAGA ACTGCTGAAA GAAGACATAC CAAGAGCAGA GAATGATGGT GTTAAAGTAA 580 AAGTTATAGC AGGTGAAGCA ATGGGAGTCC AATCCCCGGT TTACACACAA ACGCCTACAA 3545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTATAGC AGGTGAAGCA ATGGGAGTCC AATCCCCGGT TTACACACAA ACGCCTACAA 640 TGTACCTCGA TTTCA-CCCT ACAACCAACA GCTTACTATC ATCAAGCCAT CCCTGAATCT 3604 |||||||||| ||||| |||| || ||||||| |||||||||| || |||||| |||||||||| TGTACCTCGA TTTCACCCCT AC-ACCAACA GCTTACTATC ATNCAGCCAT CCCTGAATCT 699 TGGAACGCCT TCGTATATAT AGTTG-AAGG AGAAGGTGTC TTCGGAATTC CGAGTTCAGG 3663 ||||| || |||||||||| ||||| |||| |||| ||||| |||||||||| |||| ||||| TGGAAACGCT TCGTATATAT AGTTGAAAGG AGAA-GTGTC TTCGGAATTC CGAGNTCAGG 758 TCCTGTATCA GCTCACCATT GCTTG 3688 |||||||||| |||||||||| ||||| TCCTGTATCA GCTCACCATT GCTTG 783 hqPGS_C09HBa0109D11.1+_SGN-E213196+ (1146 1369,1774 1823,2058 2125,2522 2584,2777 2880,3415 3688) ******************************************************************************** EST sequence 115 +strand 672 n (File: SGN-E344534+) 1 TTTGCATTCT TTCTCTCTCT AAACCTCAAA AAGTTTCAAT TTTTCAGCAA ATGGACTCTT 61 CAGATGATGA GGGTGAGGAG TATCTTTTCA AGATTGTAAT CATTGGTGAT TCTGCAGTAG 121 GTAAATCTAA TTTGCTTACA CGTTATGCAA GAAATGAGTT TAATTTGCAT TCAAAAGCAA 181 CTATTGGAGT TGAGTTTCAG ACCCAAACTC TTGAAATTGA TGGAAAAGAA GTTAAAGCTC 241 AGATTTGGGA TACTGCTGGA CAAGAAAGGT TTAGAGCTGT GACTTCTGCT TATTATCGTG 301 GTGCTTTTGG TGCTCTTGTT GTTTATGATA TTTCAAGAAG GACAACTTTT GATAGTATCC 361 CTCGTTGGCT TGATGAACTC AAAACTCATT CGGATACAAC GGTTGCAAGG ATACTGGTGG 421 GAAACAAATG TGACTTGGAG AATATAAGAG CTGTGAGCGT AGAAGAAGGC AAAAGCCTGG 481 CAGAATCAGA AGGGATGTTC TTCATGGAGA CATCTGCCCT CGATTCAACA AACGTGAACA 541 AGGCTTTCGA GATTGTGATT CGAGAGATCT ATAATAGTGT TAGCAGAAAG GTTTTGAATT 601 CCGATTCTTA TAAAGCCGAA TTATCTGTCA ACAGAGTCAA CCTGGTCAAC GATGGTACCG 661 ATGGATCGAA AC Predicted gene structure (within gDNA segment 9370 to 4890): Exon 1 8770 8387 ( 384 n); cDNA 1 384 ( 384 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 5787 5500 ( 288 n); cDNA 385 672 ( 288 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E344534+ 1.000 672 1.000 C PGS_C09HBa0109D11.1-_SGN-E344534+ (8770 8387,5787 5500) Alignment (genomic DNA sequence = upper lines): TTTGCATTCT TTCTCTCTCT AAACCTCAAA AAGTTTCAAT TTTTCAGCAA ATGGACTCTT 8711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCATTCT TTCTCTCTCT AAACCTCAAA AAGTTTCAAT TTTTCAGCAA ATGGACTCTT 60 CAGATGATGA GGGTGAGGAG TATCTTTTCA AGATTGTAAT CATTGGTGAT TCTGCAGTAG 8651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGATGA GGGTGAGGAG TATCTTTTCA AGATTGTAAT CATTGGTGAT TCTGCAGTAG 120 GTAAATCTAA TTTGCTTACA CGTTATGCAA GAAATGAGTT TAATTTGCAT TCAAAAGCAA 8591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAATCTAA TTTGCTTACA CGTTATGCAA GAAATGAGTT TAATTTGCAT TCAAAAGCAA 180 CTATTGGAGT TGAGTTTCAG ACCCAAACTC TTGAAATTGA TGGAAAAGAA GTTAAAGCTC 8531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGGAGT TGAGTTTCAG ACCCAAACTC TTGAAATTGA TGGAAAAGAA GTTAAAGCTC 240 AGATTTGGGA TACTGCTGGA CAAGAAAGGT TTAGAGCTGT GACTTCTGCT TATTATCGTG 8471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTGGGA TACTGCTGGA CAAGAAAGGT TTAGAGCTGT GACTTCTGCT TATTATCGTG 300 GTGCTTTTGG TGCTCTTGTT GTTTATGATA TTTCAAGAAG GACAACTTTT GATAGTATCC 8411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTTTTGG TGCTCTTGTT GTTTATGATA TTTCAAGAAG GACAACTTTT GATAGTATCC 360 CTCGTTGGCT TGATGAACTC AAAAGTATGT ATCTTTTTTG CTAAAAGTTC CATTTTTTAA 8351 |||||||||| |||||||||| |||| CTCGTTGGCT TGATGAACTC AAAA...... .......... .......... .......... 384 TTTTTATAAG TTGGTTTTGG TTTATGTTGA ATTCTTATTT GTCATTCAAA GTTTTCACCT 8291 .......... .......... .......... .......... .......... .......... 384 TTTTTGGTGG ATTGGCTTGA GTTTAGTCTT TTGAGATTTG ATGATGTTAT GATGGAATGG 8231 .......... .......... .......... .......... .......... .......... 384 TAATTCTTAG ATTTGAATTC TACATTCTAG TTTATGTTGC TAAAAAAAAT ACTCTTTTGT 8171 .......... .......... .......... .......... .......... .......... 384 TTAGCTTGGT TTTGGTTTAT GTTGAATTCC CATCCAAGTT TTATGCATTG TCTTTGGTTT 8111 .......... .......... .......... .......... .......... .......... 384 GTATATAGAA AATTCTCACC TTTTTGGTGG ATTGGCTGTA AAGCTTAGTT TTTTTTAGAT 8051 .......... .......... .......... .......... .......... .......... 384 TTGATGGTGT TAGGATAGAA TGGTAATTCT TAGATTTGAC TTCTATATTC TTGTTTATGT 7991 .......... .......... .......... .......... .......... .......... 384 TGCTAGTAGT CTTTTCTTTG TTTAGCTTGG TTTTGGTTTA TGTTGAATTC CCATCAAAGT 7931 .......... .......... .......... .......... .......... .......... 384 TGTATGCATA TCTTTTGCTT TGTGCAAGAA AAGTTTTCAC CTTTTTCAAA TATGGTGAGG 7871 .......... .......... .......... .......... .......... .......... 384 TTTTGGTGGA TTGGCTATAA AGTTCAGTTC TTGAGGTTTT GATTATGCTA TGATATAATG 7811 .......... .......... .......... .......... .......... .......... 384 GTAATTCTTA GATTTGGCAT TTGTTGCTAA AATTCTTCTC TTTTTCTAGA CTTGGTTTTG 7751 .......... .......... .......... .......... .......... .......... 384 TTTTATGTTC ATCTAAGCTT TATGCATTGT CTTTTCTTTG TGCACAGAAA GTTCTCAACT 7691 .......... .......... .......... .......... .......... .......... 384 TTTTGGTGGA TTGGCTGTAA AGTCTATTTT TTTGAGAATT GACGGTGTTA TGATAGAATG 7631 .......... .......... .......... .......... .......... .......... 384 CTAGTTCTTT AGATTTGACT TCTACGTTAT TCGTTTTGTT TATAATTAGT TATTGGATAA 7571 .......... .......... .......... .......... .......... .......... 384 ATTGACAAGT GAGTCGAGAT CTGATTGTTG TATTCGTATG TCTCTGTTTC TACAAAAAAA 7511 .......... .......... .......... .......... .......... .......... 384 ATTGAACTTA ATTTTGGTTC ATGTTGAATT CCCACTTTTC AACTTGGTTT TGGCATATGT 7451 .......... .......... .......... .......... .......... .......... 384 TGAGTTCCCA TCAAAGTATG ATACACATAT TTTCTTTTTT TCATAAAAGT TCCTCACCTT 7391 .......... .......... .......... .......... .......... .......... 384 TTTGAGATTT ATTGAGGTTG GTAGTATAAA GTTCAGTTTT TGAGATTTGA TGGTGTTATG 7331 .......... .......... .......... .......... .......... .......... 384 ACATGATGGC AATTCTGGAA TTTGACTTCC ACATTCTTGG TTCTTGATTA TAACTTATAA 7271 .......... .......... .......... .......... .......... .......... 384 GTATGTAAGA TATCTTGTAG ATCCGAAAAG TCTTGGCTAC TTTAACTATT TAGGACGATG 7211 .......... .......... .......... .......... .......... .......... 384 GAATATGCCA TAAGGGTAAT TTTAATCGAG TTTTTCTAGA ATTGAATAAT GGATGTGTTC 7151 .......... .......... .......... .......... .......... .......... 384 AATCTATATT TTTTGAATCT TGTTTTGGTT CCGATAACTT TTCTCTTTAA CTGAATAATG 7091 .......... .......... .......... .......... .......... .......... 384 TAAGATTTTA CAGTTGCTAT TAAGTCTAAT TCAATCATTT TAGTAAAAAA TTACTTACCA 7031 .......... .......... .......... .......... .......... .......... 384 GACATAGAAA CAAATGGCAA TGTTAGCTAG AAAAATCTTG AGTCTTGATT ATGTATCATT 6971 .......... .......... .......... .......... .......... .......... 384 GTTACTTGAA GCAATGGCAA AGAAAGCGGT ATATATGCCA ATGTAGCTGT TATGCTCAAT 6911 .......... .......... .......... .......... .......... .......... 384 TTTGTCTAGA TGCAGTTGGG AACCTATGAT AAGAACGAAT TAGACAGACT GTCAATTGGA 6851 .......... .......... .......... .......... .......... .......... 384 TGTATATTAG GAATTGGAAT TCAAGTCATG CTTTTCTTTC TCCGAAAAGC CAATCCAAAT 6791 .......... .......... .......... .......... .......... .......... 384 GAACTTCTCA ACGGATCATA CTTATATGGA ATCTGTTTTA TTTGCTTGAT TGTGAAAATA 6731 .......... .......... .......... .......... .......... .......... 384 ATTAGGACCA ACAACCTGGC TTACCTACGT ATGGTATTAT GGTAGACTAA GGAGTCTCAC 6671 .......... .......... .......... .......... .......... .......... 384 GGATTGATAA AAAATCTCAG AGATTCTTTT GATGTTAAAT GGTGCCATAT TTATAACTTA 6611 .......... .......... .......... .......... .......... .......... 384 GGTAGTCTCT CTGTTAAGCC CTTAGCTAAC TAAGTTTTGG CTGGACGGGA GTGTATATTT 6551 .......... .......... .......... .......... .......... .......... 384 GTTGCTTTGA GCCGTGAGCT GCTATGTGAT ACTTGCATGA CCTTATTTTG TTATTCAAAT 6491 .......... .......... .......... .......... .......... .......... 384 CTGTTCTTGT CTTGCAAATA TCATTTGAAT CTTGAAAATG AATGACTTTG TGCTCACTGT 6431 .......... .......... .......... .......... .......... .......... 384 TTCCAAAATT GAGAACTTTT AGAACTTAAT GTCCATAATA TAGATCGAGG AGTATTAACT 6371 .......... .......... .......... .......... .......... .......... 384 CTTGATCTAT CAGAATGAGT GGATCAGATA CAAGGCCGTT TGCCCAAGTT CAAGATGTTA 6311 .......... .......... .......... .......... .......... .......... 384 GCTTGAGCCC TGACATGGTC CGAGATCCCT ATCTTTAAGG CCATTAAAGA ACCCAGGGCC 6251 .......... .......... .......... .......... .......... .......... 384 AGGGAAATGT GATAAACAGA ATGTTAACAT TTGCAGCATA TATAACCACA AATGAGGTTT 6191 .......... .......... .......... .......... .......... .......... 384 GTACTCCACA AGCTTCATTT AATCACGAGA TGAAATGAGC AGAGGATTAT GTCATCAAAA 6131 .......... .......... .......... .......... .......... .......... 384 TCAAAGTCAG TGTTAATAAG GTGCATCATT TTGCTTCCTG GTGTGATGGA GACAATGAAG 6071 .......... .......... .......... .......... .......... .......... 384 TAGTTAATAG CGACTTAAGG AAATTCAGAT ACATACTTTT GAAGGAAATA TATGTAGTAA 6011 .......... .......... .......... .......... .......... .......... 384 TATTAAGTTT TACAGACTCT TTATAGGTGC AGGTGCTGTA CTTGAACTTT GCATTCACGA 5951 .......... .......... .......... .......... .......... .......... 384 GCTTATTTAT CACACTTTGC CTTGGAATGA TACTCTCTGC TGTCGGGAAT CCCAACTTTT 5891 .......... .......... .......... .......... .......... .......... 384 ATTTATACCG TTATAGTATT AGGTGTGCAA ATTACATGTT ATGGTGGTGT TCTATATGTT 5831 .......... .......... .......... .......... .......... .......... 384 CTTCATACTC CCAATCATAA CTGAAATAAC CATTTTCATG CAGCTCATTC GGATACAACG 5771 ||||||| |||||||||| .......... .......... .......... .......... ...CTCATTC GGATACAACG 401 GTTGCAAGGA TACTGGTGGG AAACAAATGT GACTTGGAGA ATATAAGAGC TGTGAGCGTA 5711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCAAGGA TACTGGTGGG AAACAAATGT GACTTGGAGA ATATAAGAGC TGTGAGCGTA 461 GAAGAAGGCA AAAGCCTGGC AGAATCAGAA GGGATGTTCT TCATGGAGAC ATCTGCCCTC 5651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGGCA AAAGCCTGGC AGAATCAGAA GGGATGTTCT TCATGGAGAC ATCTGCCCTC 521 GATTCAACAA ACGTGAACAA GGCTTTCGAG ATTGTGATTC GAGAGATCTA TAATAGTGTT 5591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAACAA ACGTGAACAA GGCTTTCGAG ATTGTGATTC GAGAGATCTA TAATAGTGTT 581 AGCAGAAAGG TTTTGAATTC CGATTCTTAT AAAGCCGAAT TATCTGTCAA CAGAGTCAAC 5531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGAAAGG TTTTGAATTC CGATTCTTAT AAAGCCGAAT TATCTGTCAA CAGAGTCAAC 641 CTGGTCAACG ATGGTACCGA TGGATCGAAA C 5500 |||||||||| |||||||||| |||||||||| | CTGGTCAACG ATGGTACCGA TGGATCGAAA C 672 hqPGS_C09HBa0109D11.1-_SGN-E344534+ (8770 8387,5787 5500) ******************************************************************************** EST sequence 69 +strand 662 n (File: SGN-E348365+) 1 TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 61 AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 121 ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 181 TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 241 ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 301 GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 361 TTGATGAACT CAAAACTCAT TCGGATACAA CGGTTGCAAG GATACTGGTG GGAAACAAAT 421 GTGACTTGGA GAATATAAGA GCTGTGAGCG TAGAAGAAGG CAAAAGCCTG GCAGAATCAG 481 AAGGGATGTT CTTCATGGAG ACATCTGCCC TCGATTCAAC ANACGTGAAC AAGGCTTTCG 541 AGATTGTGAT TCGAGAGATC TATAATAGTG TTAGCAGAAA GGGTTTTGAA TTCCGATTCT 601 TATAAAGCCC GATTATCTGT CAACAGAGTC AACCTGGTCA ACGATGGTAC CGATGGATCG 661 AA Predicted gene structure (within gDNA segment 9361 to 4892): Exon 1 8761 8387 ( 375 n); cDNA 1 375 ( 375 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 5787 5502 ( 286 n); cDNA 376 662 ( 287 n); score: 0.981 MATCH C09HBa0109D11.1- SGN-E348365+ 0.992 661 0.998 C PGS_C09HBa0109D11.1-_SGN-E348365+ (8761 8387,5787 5502) Alignment (genomic DNA sequence = upper lines): TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 8702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 60 AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 8642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 120 ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 8582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 180 TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 8522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 240 ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 8462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 300 GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 8402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 360 TTGATGAACT CAAAAGTATG TATCTTTTTT GCTAAAAGTT CCATTTTTTA ATTTTTATAA 8342 |||||||||| ||||| TTGATGAACT CAAAA..... .......... .......... .......... .......... 375 GTTGGTTTTG GTTTATGTTG AATTCTTATT TGTCATTCAA AGTTTTCACC TTTTTTGGTG 8282 .......... .......... .......... .......... .......... .......... 375 GATTGGCTTG AGTTTAGTCT TTTGAGATTT GATGATGTTA TGATGGAATG GTAATTCTTA 8222 .......... .......... .......... .......... .......... .......... 375 GATTTGAATT CTACATTCTA GTTTATGTTG CTAAAAAAAA TACTCTTTTG TTTAGCTTGG 8162 .......... .......... .......... .......... .......... .......... 375 TTTTGGTTTA TGTTGAATTC CCATCCAAGT TTTATGCATT GTCTTTGGTT TGTATATAGA 8102 .......... .......... .......... .......... .......... .......... 375 AAATTCTCAC CTTTTTGGTG GATTGGCTGT AAAGCTTAGT TTTTTTTAGA TTTGATGGTG 8042 .......... .......... .......... .......... .......... .......... 375 TTAGGATAGA ATGGTAATTC TTAGATTTGA CTTCTATATT CTTGTTTATG TTGCTAGTAG 7982 .......... .......... .......... .......... .......... .......... 375 TCTTTTCTTT GTTTAGCTTG GTTTTGGTTT ATGTTGAATT CCCATCAAAG TTGTATGCAT 7922 .......... .......... .......... .......... .......... .......... 375 ATCTTTTGCT TTGTGCAAGA AAAGTTTTCA CCTTTTTCAA ATATGGTGAG GTTTTGGTGG 7862 .......... .......... .......... .......... .......... .......... 375 ATTGGCTATA AAGTTCAGTT CTTGAGGTTT TGATTATGCT ATGATATAAT GGTAATTCTT 7802 .......... .......... .......... .......... .......... .......... 375 AGATTTGGCA TTTGTTGCTA AAATTCTTCT CTTTTTCTAG ACTTGGTTTT GTTTTATGTT 7742 .......... .......... .......... .......... .......... .......... 375 CATCTAAGCT TTATGCATTG TCTTTTCTTT GTGCACAGAA AGTTCTCAAC TTTTTGGTGG 7682 .......... .......... .......... .......... .......... .......... 375 ATTGGCTGTA AAGTCTATTT TTTTGAGAAT TGACGGTGTT ATGATAGAAT GCTAGTTCTT 7622 .......... .......... .......... .......... .......... .......... 375 TAGATTTGAC TTCTACGTTA TTCGTTTTGT TTATAATTAG TTATTGGATA AATTGACAAG 7562 .......... .......... .......... .......... .......... .......... 375 TGAGTCGAGA TCTGATTGTT GTATTCGTAT GTCTCTGTTT CTACAAAAAA AATTGAACTT 7502 .......... .......... .......... .......... .......... .......... 375 AATTTTGGTT CATGTTGAAT TCCCACTTTT CAACTTGGTT TTGGCATATG TTGAGTTCCC 7442 .......... .......... .......... .......... .......... .......... 375 ATCAAAGTAT GATACACATA TTTTCTTTTT TTCATAAAAG TTCCTCACCT TTTTGAGATT 7382 .......... .......... .......... .......... .......... .......... 375 TATTGAGGTT GGTAGTATAA AGTTCAGTTT TTGAGATTTG ATGGTGTTAT GACATGATGG 7322 .......... .......... .......... .......... .......... .......... 375 CAATTCTGGA ATTTGACTTC CACATTCTTG GTTCTTGATT ATAACTTATA AGTATGTAAG 7262 .......... .......... .......... .......... .......... .......... 375 ATATCTTGTA GATCCGAAAA GTCTTGGCTA CTTTAACTAT TTAGGACGAT GGAATATGCC 7202 .......... .......... .......... .......... .......... .......... 375 ATAAGGGTAA TTTTAATCGA GTTTTTCTAG AATTGAATAA TGGATGTGTT CAATCTATAT 7142 .......... .......... .......... .......... .......... .......... 375 TTTTTGAATC TTGTTTTGGT TCCGATAACT TTTCTCTTTA ACTGAATAAT GTAAGATTTT 7082 .......... .......... .......... .......... .......... .......... 375 ACAGTTGCTA TTAAGTCTAA TTCAATCATT TTAGTAAAAA ATTACTTACC AGACATAGAA 7022 .......... .......... .......... .......... .......... .......... 375 ACAAATGGCA ATGTTAGCTA GAAAAATCTT GAGTCTTGAT TATGTATCAT TGTTACTTGA 6962 .......... .......... .......... .......... .......... .......... 375 AGCAATGGCA AAGAAAGCGG TATATATGCC AATGTAGCTG TTATGCTCAA TTTTGTCTAG 6902 .......... .......... .......... .......... .......... .......... 375 ATGCAGTTGG GAACCTATGA TAAGAACGAA TTAGACAGAC TGTCAATTGG ATGTATATTA 6842 .......... .......... .......... .......... .......... .......... 375 GGAATTGGAA TTCAAGTCAT GCTTTTCTTT CTCCGAAAAG CCAATCCAAA TGAACTTCTC 6782 .......... .......... .......... .......... .......... .......... 375 AACGGATCAT ACTTATATGG AATCTGTTTT ATTTGCTTGA TTGTGAAAAT AATTAGGACC 6722 .......... .......... .......... .......... .......... .......... 375 AACAACCTGG CTTACCTACG TATGGTATTA TGGTAGACTA AGGAGTCTCA CGGATTGATA 6662 .......... .......... .......... .......... .......... .......... 375 AAAAATCTCA GAGATTCTTT TGATGTTAAA TGGTGCCATA TTTATAACTT AGGTAGTCTC 6602 .......... .......... .......... .......... .......... .......... 375 TCTGTTAAGC CCTTAGCTAA CTAAGTTTTG GCTGGACGGG AGTGTATATT TGTTGCTTTG 6542 .......... .......... .......... .......... .......... .......... 375 AGCCGTGAGC TGCTATGTGA TACTTGCATG ACCTTATTTT GTTATTCAAA TCTGTTCTTG 6482 .......... .......... .......... .......... .......... .......... 375 TCTTGCAAAT ATCATTTGAA TCTTGAAAAT GAATGACTTT GTGCTCACTG TTTCCAAAAT 6422 .......... .......... .......... .......... .......... .......... 375 TGAGAACTTT TAGAACTTAA TGTCCATAAT ATAGATCGAG GAGTATTAAC TCTTGATCTA 6362 .......... .......... .......... .......... .......... .......... 375 TCAGAATGAG TGGATCAGAT ACAAGGCCGT TTGCCCAAGT TCAAGATGTT AGCTTGAGCC 6302 .......... .......... .......... .......... .......... .......... 375 CTGACATGGT CCGAGATCCC TATCTTTAAG GCCATTAAAG AACCCAGGGC CAGGGAAATG 6242 .......... .......... .......... .......... .......... .......... 375 TGATAAACAG AATGTTAACA TTTGCAGCAT ATATAACCAC AAATGAGGTT TGTACTCCAC 6182 .......... .......... .......... .......... .......... .......... 375 AAGCTTCATT TAATCACGAG ATGAAATGAG CAGAGGATTA TGTCATCAAA ATCAAAGTCA 6122 .......... .......... .......... .......... .......... .......... 375 GTGTTAATAA GGTGCATCAT TTTGCTTCCT GGTGTGATGG AGACAATGAA GTAGTTAATA 6062 .......... .......... .......... .......... .......... .......... 375 GCGACTTAAG GAAATTCAGA TACATACTTT TGAAGGAAAT ATATGTAGTA ATATTAAGTT 6002 .......... .......... .......... .......... .......... .......... 375 TTACAGACTC TTTATAGGTG CAGGTGCTGT ACTTGAACTT TGCATTCACG AGCTTATTTA 5942 .......... .......... .......... .......... .......... .......... 375 TCACACTTTG CCTTGGAATG ATACTCTCTG CTGTCGGGAA TCCCAACTTT TATTTATACC 5882 .......... .......... .......... .......... .......... .......... 375 GTTATAGTAT TAGGTGTGCA AATTACATGT TATGGTGGTG TTCTATATGT TCTTCATACT 5822 .......... .......... .......... .......... .......... .......... 375 CCCAATCATA ACTGAAATAA CCATTTTCAT GCAGCTCATT CGGATACAAC GGTTGCAAGG 5762 |||||| |||||||||| |||||||||| .......... .......... .......... ....CTCATT CGGATACAAC GGTTGCAAGG 401 ATACTGGTGG GAAACAAATG TGACTTGGAG AATATAAGAG CTGTGAGCGT AGAAGAAGGC 5702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGGTGG GAAACAAATG TGACTTGGAG AATATAAGAG CTGTGAGCGT AGAAGAAGGC 461 AAAAGCCTGG CAGAATCAGA AGGGATGTTC TTCATGGAGA CATCTGCCCT CGATTCAACA 5642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCCTGG CAGAATCAGA AGGGATGTTC TTCATGGAGA CATCTGCCCT CGATTCAACA 521 AACGTGAACA AGGCTTTCGA GATTGTGATT CGAGAGATCT ATAATAGTGT TAGCAGAAAG 5582 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| NACGTGAACA AGGCTTTCGA GATTGTGATT CGAGAGATCT ATAATAGTGT TAGCAGAAAG 581 G-TTTTGAAT TCCGATTCTT ATAAAGCCGA ATTATCTGTC AACAGAGTCA ACCTGGTCAA 5523 | |||||||| |||||||||| |||||||| |||||||||| |||||||||| |||||||||| GGTTTTGAAT TCCGATTCTT ATAAAGCCCG ATTATCTGTC AACAGAGTCA ACCTGGTCAA 641 CGATGGTACC GATGGATCGA A 5502 |||||||||| |||||||||| | CGATGGTACC GATGGATCGA A 662 hqPGS_C09HBa0109D11.1-_SGN-E348365+ (8761 8387,5787 5502) ******************************************************************************** EST sequence 111 +strand 538 n (File: SGN-E205434+) 1 TTCCCCCCTC TCTCTCTCTC TAGATCACCA GTTTGCATTC TTTCTCTCTC TAAACCTCAA 61 AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG AGGGTGAGGA GTATCTTTTC 121 AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA ATTTGCTTAC ACGTTATGCA 181 AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG TTGAGTTTCA GACCCAAACT 241 CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG ATACTGCTGG ACAAGAAAGG 301 TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG GTGCTCTTGT TGTTTATGAT 361 ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC TTGATGAACT CAAAACTCAT 421 TCGGATACAA CGGTTGCAAG GATACTGGTG GGAAACAAAT GTGACTTGGA GAATATAAGA 481 GCTGTGAGCG TAGAAGAAGG CAAAAGCCTG GCAGAATCAG AAGGGATGTT CTTCATGG Predicted gene structure (within gDNA segment 9455 to 5055): Exon 1 8801 8387 ( 415 n); cDNA 1 415 ( 415 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 5787 5665 ( 123 n); cDNA 416 538 ( 123 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E205434+ 1.000 538 1.000 C PGS_C09HBa0109D11.1-_SGN-E205434+ (8801 8387,5787 5665) Alignment (genomic DNA sequence = upper lines): TTCCCCCCTC TCTCTCTCTC TAGATCACCA GTTTGCATTC TTTCTCTCTC TAAACCTCAA 8742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCCCCTC TCTCTCTCTC TAGATCACCA GTTTGCATTC TTTCTCTCTC TAAACCTCAA 60 AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG AGGGTGAGGA GTATCTTTTC 8682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG AGGGTGAGGA GTATCTTTTC 120 AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA ATTTGCTTAC ACGTTATGCA 8622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA ATTTGCTTAC ACGTTATGCA 180 AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG TTGAGTTTCA GACCCAAACT 8562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG TTGAGTTTCA GACCCAAACT 240 CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG ATACTGCTGG ACAAGAAAGG 8502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG ATACTGCTGG ACAAGAAAGG 300 TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG GTGCTCTTGT TGTTTATGAT 8442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG GTGCTCTTGT TGTTTATGAT 360 ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC TTGATGAACT CAAAAGTATG 8382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC TTGATGAACT CAAAA..... 415 TATCTTTTTT GCTAAAAGTT CCATTTTTTA ATTTTTATAA GTTGGTTTTG GTTTATGTTG 8322 .......... .......... .......... .......... .......... .......... 415 AATTCTTATT TGTCATTCAA AGTTTTCACC TTTTTTGGTG GATTGGCTTG AGTTTAGTCT 8262 .......... .......... .......... .......... .......... .......... 415 TTTGAGATTT GATGATGTTA TGATGGAATG GTAATTCTTA GATTTGAATT CTACATTCTA 8202 .......... .......... .......... .......... .......... .......... 415 GTTTATGTTG CTAAAAAAAA TACTCTTTTG TTTAGCTTGG TTTTGGTTTA TGTTGAATTC 8142 .......... .......... .......... .......... .......... .......... 415 CCATCCAAGT TTTATGCATT GTCTTTGGTT TGTATATAGA AAATTCTCAC CTTTTTGGTG 8082 .......... .......... .......... .......... .......... .......... 415 GATTGGCTGT AAAGCTTAGT TTTTTTTAGA TTTGATGGTG TTAGGATAGA ATGGTAATTC 8022 .......... .......... .......... .......... .......... .......... 415 TTAGATTTGA CTTCTATATT CTTGTTTATG TTGCTAGTAG TCTTTTCTTT GTTTAGCTTG 7962 .......... .......... .......... .......... .......... .......... 415 GTTTTGGTTT ATGTTGAATT CCCATCAAAG TTGTATGCAT ATCTTTTGCT TTGTGCAAGA 7902 .......... .......... .......... .......... .......... .......... 415 AAAGTTTTCA CCTTTTTCAA ATATGGTGAG GTTTTGGTGG ATTGGCTATA AAGTTCAGTT 7842 .......... .......... .......... .......... .......... .......... 415 CTTGAGGTTT TGATTATGCT ATGATATAAT GGTAATTCTT AGATTTGGCA TTTGTTGCTA 7782 .......... .......... .......... .......... .......... .......... 415 AAATTCTTCT CTTTTTCTAG ACTTGGTTTT GTTTTATGTT CATCTAAGCT TTATGCATTG 7722 .......... .......... .......... .......... .......... .......... 415 TCTTTTCTTT GTGCACAGAA AGTTCTCAAC TTTTTGGTGG ATTGGCTGTA AAGTCTATTT 7662 .......... .......... .......... .......... .......... .......... 415 TTTTGAGAAT TGACGGTGTT ATGATAGAAT GCTAGTTCTT TAGATTTGAC TTCTACGTTA 7602 .......... .......... .......... .......... .......... .......... 415 TTCGTTTTGT TTATAATTAG TTATTGGATA AATTGACAAG TGAGTCGAGA TCTGATTGTT 7542 .......... .......... .......... .......... .......... .......... 415 GTATTCGTAT GTCTCTGTTT CTACAAAAAA AATTGAACTT AATTTTGGTT CATGTTGAAT 7482 .......... .......... .......... .......... .......... .......... 415 TCCCACTTTT CAACTTGGTT TTGGCATATG TTGAGTTCCC ATCAAAGTAT GATACACATA 7422 .......... .......... .......... .......... .......... .......... 415 TTTTCTTTTT TTCATAAAAG TTCCTCACCT TTTTGAGATT TATTGAGGTT GGTAGTATAA 7362 .......... .......... .......... .......... .......... .......... 415 AGTTCAGTTT TTGAGATTTG ATGGTGTTAT GACATGATGG CAATTCTGGA ATTTGACTTC 7302 .......... .......... .......... .......... .......... .......... 415 CACATTCTTG GTTCTTGATT ATAACTTATA AGTATGTAAG ATATCTTGTA GATCCGAAAA 7242 .......... .......... .......... .......... .......... .......... 415 GTCTTGGCTA CTTTAACTAT TTAGGACGAT GGAATATGCC ATAAGGGTAA TTTTAATCGA 7182 .......... .......... .......... .......... .......... .......... 415 GTTTTTCTAG AATTGAATAA TGGATGTGTT CAATCTATAT TTTTTGAATC TTGTTTTGGT 7122 .......... .......... .......... .......... .......... .......... 415 TCCGATAACT TTTCTCTTTA ACTGAATAAT GTAAGATTTT ACAGTTGCTA TTAAGTCTAA 7062 .......... .......... .......... .......... .......... .......... 415 TTCAATCATT TTAGTAAAAA ATTACTTACC AGACATAGAA ACAAATGGCA ATGTTAGCTA 7002 .......... .......... .......... .......... .......... .......... 415 GAAAAATCTT GAGTCTTGAT TATGTATCAT TGTTACTTGA AGCAATGGCA AAGAAAGCGG 6942 .......... .......... .......... .......... .......... .......... 415 TATATATGCC AATGTAGCTG TTATGCTCAA TTTTGTCTAG ATGCAGTTGG GAACCTATGA 6882 .......... .......... .......... .......... .......... .......... 415 TAAGAACGAA TTAGACAGAC TGTCAATTGG ATGTATATTA GGAATTGGAA TTCAAGTCAT 6822 .......... .......... .......... .......... .......... .......... 415 GCTTTTCTTT CTCCGAAAAG CCAATCCAAA TGAACTTCTC AACGGATCAT ACTTATATGG 6762 .......... .......... .......... .......... .......... .......... 415 AATCTGTTTT ATTTGCTTGA TTGTGAAAAT AATTAGGACC AACAACCTGG CTTACCTACG 6702 .......... .......... .......... .......... .......... .......... 415 TATGGTATTA TGGTAGACTA AGGAGTCTCA CGGATTGATA AAAAATCTCA GAGATTCTTT 6642 .......... .......... .......... .......... .......... .......... 415 TGATGTTAAA TGGTGCCATA TTTATAACTT AGGTAGTCTC TCTGTTAAGC CCTTAGCTAA 6582 .......... .......... .......... .......... .......... .......... 415 CTAAGTTTTG GCTGGACGGG AGTGTATATT TGTTGCTTTG AGCCGTGAGC TGCTATGTGA 6522 .......... .......... .......... .......... .......... .......... 415 TACTTGCATG ACCTTATTTT GTTATTCAAA TCTGTTCTTG TCTTGCAAAT ATCATTTGAA 6462 .......... .......... .......... .......... .......... .......... 415 TCTTGAAAAT GAATGACTTT GTGCTCACTG TTTCCAAAAT TGAGAACTTT TAGAACTTAA 6402 .......... .......... .......... .......... .......... .......... 415 TGTCCATAAT ATAGATCGAG GAGTATTAAC TCTTGATCTA TCAGAATGAG TGGATCAGAT 6342 .......... .......... .......... .......... .......... .......... 415 ACAAGGCCGT TTGCCCAAGT TCAAGATGTT AGCTTGAGCC CTGACATGGT CCGAGATCCC 6282 .......... .......... .......... .......... .......... .......... 415 TATCTTTAAG GCCATTAAAG AACCCAGGGC CAGGGAAATG TGATAAACAG AATGTTAACA 6222 .......... .......... .......... .......... .......... .......... 415 TTTGCAGCAT ATATAACCAC AAATGAGGTT TGTACTCCAC AAGCTTCATT TAATCACGAG 6162 .......... .......... .......... .......... .......... .......... 415 ATGAAATGAG CAGAGGATTA TGTCATCAAA ATCAAAGTCA GTGTTAATAA GGTGCATCAT 6102 .......... .......... .......... .......... .......... .......... 415 TTTGCTTCCT GGTGTGATGG AGACAATGAA GTAGTTAATA GCGACTTAAG GAAATTCAGA 6042 .......... .......... .......... .......... .......... .......... 415 TACATACTTT TGAAGGAAAT ATATGTAGTA ATATTAAGTT TTACAGACTC TTTATAGGTG 5982 .......... .......... .......... .......... .......... .......... 415 CAGGTGCTGT ACTTGAACTT TGCATTCACG AGCTTATTTA TCACACTTTG CCTTGGAATG 5922 .......... .......... .......... .......... .......... .......... 415 ATACTCTCTG CTGTCGGGAA TCCCAACTTT TATTTATACC GTTATAGTAT TAGGTGTGCA 5862 .......... .......... .......... .......... .......... .......... 415 AATTACATGT TATGGTGGTG TTCTATATGT TCTTCATACT CCCAATCATA ACTGAAATAA 5802 .......... .......... .......... .......... .......... .......... 415 CCATTTTCAT GCAGCTCATT CGGATACAAC GGTTGCAAGG ATACTGGTGG GAAACAAATG 5742 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CTCATT CGGATACAAC GGTTGCAAGG ATACTGGTGG GAAACAAATG 461 TGACTTGGAG AATATAAGAG CTGTGAGCGT AGAAGAAGGC AAAAGCCTGG CAGAATCAGA 5682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTTGGAG AATATAAGAG CTGTGAGCGT AGAAGAAGGC AAAAGCCTGG CAGAATCAGA 521 AGGGATGTTC TTCATGG 5665 |||||||||| ||||||| AGGGATGTTC TTCATGG 538 hqPGS_C09HBa0109D11.1-_SGN-E205434+ (8801 8387,5787 5665) ******************************************************************************** EST sequence 94 +strand 495 n (File: SGN-E204292+) 1 CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 61 AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 121 CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 181 AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCAAAC 241 TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 301 GTTTAGAGCT GTGACTTCTG CTTATTATCG TGGTGCTTTT GGTGCTCTTG TTGTTTATGA 361 TATTTCAAGA AGGACAACTT TTGATAGTAT CCCTCGTTGG CTTGATGAAC TCAAAACTCA 421 TTCGGATACA ACGGTTGCAA GGATACTGGT GGGAAACAAA TGTGACTTGG AGAATATAAG 481 AGCTGTGAGC GTAGA Predicted gene structure (within gDNA segment 9465 to 5099): Exon 1 8802 8387 ( 416 n); cDNA 1 416 ( 416 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 5787 5709 ( 79 n); cDNA 417 495 ( 79 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E204292+ 1.000 495 1.000 C PGS_C09HBa0109D11.1-_SGN-E204292+ (8802 8387,5787 5709) Alignment (genomic DNA sequence = upper lines): CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 8743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 60 AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 8683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 120 CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 8623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 180 AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCAAAC 8563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCAAAC 240 TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 8503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 300 GTTTAGAGCT GTGACTTCTG CTTATTATCG TGGTGCTTTT GGTGCTCTTG TTGTTTATGA 8443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAGAGCT GTGACTTCTG CTTATTATCG TGGTGCTTTT GGTGCTCTTG TTGTTTATGA 360 TATTTCAAGA AGGACAACTT TTGATAGTAT CCCTCGTTGG CTTGATGAAC TCAAAAGTAT 8383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TATTTCAAGA AGGACAACTT TTGATAGTAT CCCTCGTTGG CTTGATGAAC TCAAAA.... 416 GTATCTTTTT TGCTAAAAGT TCCATTTTTT AATTTTTATA AGTTGGTTTT GGTTTATGTT 8323 .......... .......... .......... .......... .......... .......... 416 GAATTCTTAT TTGTCATTCA AAGTTTTCAC CTTTTTTGGT GGATTGGCTT GAGTTTAGTC 8263 .......... .......... .......... .......... .......... .......... 416 TTTTGAGATT TGATGATGTT ATGATGGAAT GGTAATTCTT AGATTTGAAT TCTACATTCT 8203 .......... .......... .......... .......... .......... .......... 416 AGTTTATGTT GCTAAAAAAA ATACTCTTTT GTTTAGCTTG GTTTTGGTTT ATGTTGAATT 8143 .......... .......... .......... .......... .......... .......... 416 CCCATCCAAG TTTTATGCAT TGTCTTTGGT TTGTATATAG AAAATTCTCA CCTTTTTGGT 8083 .......... .......... .......... .......... .......... .......... 416 GGATTGGCTG TAAAGCTTAG TTTTTTTTAG ATTTGATGGT GTTAGGATAG AATGGTAATT 8023 .......... .......... .......... .......... .......... .......... 416 CTTAGATTTG ACTTCTATAT TCTTGTTTAT GTTGCTAGTA GTCTTTTCTT TGTTTAGCTT 7963 .......... .......... .......... .......... .......... .......... 416 GGTTTTGGTT TATGTTGAAT TCCCATCAAA GTTGTATGCA TATCTTTTGC TTTGTGCAAG 7903 .......... .......... .......... .......... .......... .......... 416 AAAAGTTTTC ACCTTTTTCA AATATGGTGA GGTTTTGGTG GATTGGCTAT AAAGTTCAGT 7843 .......... .......... .......... .......... .......... .......... 416 TCTTGAGGTT TTGATTATGC TATGATATAA TGGTAATTCT TAGATTTGGC ATTTGTTGCT 7783 .......... .......... .......... .......... .......... .......... 416 AAAATTCTTC TCTTTTTCTA GACTTGGTTT TGTTTTATGT TCATCTAAGC TTTATGCATT 7723 .......... .......... .......... .......... .......... .......... 416 GTCTTTTCTT TGTGCACAGA AAGTTCTCAA CTTTTTGGTG GATTGGCTGT AAAGTCTATT 7663 .......... .......... .......... .......... .......... .......... 416 TTTTTGAGAA TTGACGGTGT TATGATAGAA TGCTAGTTCT TTAGATTTGA CTTCTACGTT 7603 .......... .......... .......... .......... .......... .......... 416 ATTCGTTTTG TTTATAATTA GTTATTGGAT AAATTGACAA GTGAGTCGAG ATCTGATTGT 7543 .......... .......... .......... .......... .......... .......... 416 TGTATTCGTA TGTCTCTGTT TCTACAAAAA AAATTGAACT TAATTTTGGT TCATGTTGAA 7483 .......... .......... .......... .......... .......... .......... 416 TTCCCACTTT TCAACTTGGT TTTGGCATAT GTTGAGTTCC CATCAAAGTA TGATACACAT 7423 .......... .......... .......... .......... .......... .......... 416 ATTTTCTTTT TTTCATAAAA GTTCCTCACC TTTTTGAGAT TTATTGAGGT TGGTAGTATA 7363 .......... .......... .......... .......... .......... .......... 416 AAGTTCAGTT TTTGAGATTT GATGGTGTTA TGACATGATG GCAATTCTGG AATTTGACTT 7303 .......... .......... .......... .......... .......... .......... 416 CCACATTCTT GGTTCTTGAT TATAACTTAT AAGTATGTAA GATATCTTGT AGATCCGAAA 7243 .......... .......... .......... .......... .......... .......... 416 AGTCTTGGCT ACTTTAACTA TTTAGGACGA TGGAATATGC CATAAGGGTA ATTTTAATCG 7183 .......... .......... .......... .......... .......... .......... 416 AGTTTTTCTA GAATTGAATA ATGGATGTGT TCAATCTATA TTTTTTGAAT CTTGTTTTGG 7123 .......... .......... .......... .......... .......... .......... 416 TTCCGATAAC TTTTCTCTTT AACTGAATAA TGTAAGATTT TACAGTTGCT ATTAAGTCTA 7063 .......... .......... .......... .......... .......... .......... 416 ATTCAATCAT TTTAGTAAAA AATTACTTAC CAGACATAGA AACAAATGGC AATGTTAGCT 7003 .......... .......... .......... .......... .......... .......... 416 AGAAAAATCT TGAGTCTTGA TTATGTATCA TTGTTACTTG AAGCAATGGC AAAGAAAGCG 6943 .......... .......... .......... .......... .......... .......... 416 GTATATATGC CAATGTAGCT GTTATGCTCA ATTTTGTCTA GATGCAGTTG GGAACCTATG 6883 .......... .......... .......... .......... .......... .......... 416 ATAAGAACGA ATTAGACAGA CTGTCAATTG GATGTATATT AGGAATTGGA ATTCAAGTCA 6823 .......... .......... .......... .......... .......... .......... 416 TGCTTTTCTT TCTCCGAAAA GCCAATCCAA ATGAACTTCT CAACGGATCA TACTTATATG 6763 .......... .......... .......... .......... .......... .......... 416 GAATCTGTTT TATTTGCTTG ATTGTGAAAA TAATTAGGAC CAACAACCTG GCTTACCTAC 6703 .......... .......... .......... .......... .......... .......... 416 GTATGGTATT ATGGTAGACT AAGGAGTCTC ACGGATTGAT AAAAAATCTC AGAGATTCTT 6643 .......... .......... .......... .......... .......... .......... 416 TTGATGTTAA ATGGTGCCAT ATTTATAACT TAGGTAGTCT CTCTGTTAAG CCCTTAGCTA 6583 .......... .......... .......... .......... .......... .......... 416 ACTAAGTTTT GGCTGGACGG GAGTGTATAT TTGTTGCTTT GAGCCGTGAG CTGCTATGTG 6523 .......... .......... .......... .......... .......... .......... 416 ATACTTGCAT GACCTTATTT TGTTATTCAA ATCTGTTCTT GTCTTGCAAA TATCATTTGA 6463 .......... .......... .......... .......... .......... .......... 416 ATCTTGAAAA TGAATGACTT TGTGCTCACT GTTTCCAAAA TTGAGAACTT TTAGAACTTA 6403 .......... .......... .......... .......... .......... .......... 416 ATGTCCATAA TATAGATCGA GGAGTATTAA CTCTTGATCT ATCAGAATGA GTGGATCAGA 6343 .......... .......... .......... .......... .......... .......... 416 TACAAGGCCG TTTGCCCAAG TTCAAGATGT TAGCTTGAGC CCTGACATGG TCCGAGATCC 6283 .......... .......... .......... .......... .......... .......... 416 CTATCTTTAA GGCCATTAAA GAACCCAGGG CCAGGGAAAT GTGATAAACA GAATGTTAAC 6223 .......... .......... .......... .......... .......... .......... 416 ATTTGCAGCA TATATAACCA CAAATGAGGT TTGTACTCCA CAAGCTTCAT TTAATCACGA 6163 .......... .......... .......... .......... .......... .......... 416 GATGAAATGA GCAGAGGATT ATGTCATCAA AATCAAAGTC AGTGTTAATA AGGTGCATCA 6103 .......... .......... .......... .......... .......... .......... 416 TTTTGCTTCC TGGTGTGATG GAGACAATGA AGTAGTTAAT AGCGACTTAA GGAAATTCAG 6043 .......... .......... .......... .......... .......... .......... 416 ATACATACTT TTGAAGGAAA TATATGTAGT AATATTAAGT TTTACAGACT CTTTATAGGT 5983 .......... .......... .......... .......... .......... .......... 416 GCAGGTGCTG TACTTGAACT TTGCATTCAC GAGCTTATTT ATCACACTTT GCCTTGGAAT 5923 .......... .......... .......... .......... .......... .......... 416 GATACTCTCT GCTGTCGGGA ATCCCAACTT TTATTTATAC CGTTATAGTA TTAGGTGTGC 5863 .......... .......... .......... .......... .......... .......... 416 AAATTACATG TTATGGTGGT GTTCTATATG TTCTTCATAC TCCCAATCAT AACTGAAATA 5803 .......... .......... .......... .......... .......... .......... 416 ACCATTTTCA TGCAGCTCAT TCGGATACAA CGGTTGCAAG GATACTGGTG GGAAACAAAT 5743 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CTCAT TCGGATACAA CGGTTGCAAG GATACTGGTG GGAAACAAAT 461 GTGACTTGGA GAATATAAGA GCTGTGAGCG TAGA 5709 |||||||||| |||||||||| |||||||||| |||| GTGACTTGGA GAATATAAGA GCTGTGAGCG TAGA 495 hqPGS_C09HBa0109D11.1-_SGN-E204292+ (8802 8387,5787 5709) ******************************************************************************** EST sequence 126 +strand 435 n (File: SGN-E311658+) 1 TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 61 AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 121 ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 181 TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 241 ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 301 GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 361 TTGATGAACT CAAAACTCAT TCGGATACAA CGGTTGCAAG GATACTGGTG GGAAACAAAT 421 GTGACTTGGA GAATA Predicted gene structure (within gDNA segment 9361 to 5118): Exon 1 8761 8387 ( 375 n); cDNA 1 375 ( 375 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 5787 5728 ( 60 n); cDNA 376 435 ( 60 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E311658+ 1.000 435 1.000 C PGS_C09HBa0109D11.1-_SGN-E311658+ (8761 8387,5787 5728) Alignment (genomic DNA sequence = upper lines): TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 8702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTCTC TAAACCTCAA AAAGTTTCAA TTTTTCAGCA AATGGACTCT TCAGATGATG 60 AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 8642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGAGGA GTATCTTTTC AAGATTGTAA TCATTGGTGA TTCTGCAGTA GGTAAATCTA 120 ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 8582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCTTAC ACGTTATGCA AGAAATGAGT TTAATTTGCA TTCAAAAGCA ACTATTGGAG 180 TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 8522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTTTCA GACCCAAACT CTTGAAATTG ATGGAAAAGA AGTTAAAGCT CAGATTTGGG 240 ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 8462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGCTGG ACAAGAAAGG TTTAGAGCTG TGACTTCTGC TTATTATCGT GGTGCTTTTG 300 GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 8402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTCTTGT TGTTTATGAT ATTTCAAGAA GGACAACTTT TGATAGTATC CCTCGTTGGC 360 TTGATGAACT CAAAAGTATG TATCTTTTTT GCTAAAAGTT CCATTTTTTA ATTTTTATAA 8342 |||||||||| ||||| TTGATGAACT CAAAA..... .......... .......... .......... .......... 375 GTTGGTTTTG GTTTATGTTG AATTCTTATT TGTCATTCAA AGTTTTCACC TTTTTTGGTG 8282 .......... .......... .......... .......... .......... .......... 375 GATTGGCTTG AGTTTAGTCT TTTGAGATTT GATGATGTTA TGATGGAATG GTAATTCTTA 8222 .......... .......... .......... .......... .......... .......... 375 GATTTGAATT CTACATTCTA GTTTATGTTG CTAAAAAAAA TACTCTTTTG TTTAGCTTGG 8162 .......... .......... .......... .......... .......... .......... 375 TTTTGGTTTA TGTTGAATTC CCATCCAAGT TTTATGCATT GTCTTTGGTT TGTATATAGA 8102 .......... .......... .......... .......... .......... .......... 375 AAATTCTCAC CTTTTTGGTG GATTGGCTGT AAAGCTTAGT TTTTTTTAGA TTTGATGGTG 8042 .......... .......... .......... .......... .......... .......... 375 TTAGGATAGA ATGGTAATTC TTAGATTTGA CTTCTATATT CTTGTTTATG TTGCTAGTAG 7982 .......... .......... .......... .......... .......... .......... 375 TCTTTTCTTT GTTTAGCTTG GTTTTGGTTT ATGTTGAATT CCCATCAAAG TTGTATGCAT 7922 .......... .......... .......... .......... .......... .......... 375 ATCTTTTGCT TTGTGCAAGA AAAGTTTTCA CCTTTTTCAA ATATGGTGAG GTTTTGGTGG 7862 .......... .......... .......... .......... .......... .......... 375 ATTGGCTATA AAGTTCAGTT CTTGAGGTTT TGATTATGCT ATGATATAAT GGTAATTCTT 7802 .......... .......... .......... .......... .......... .......... 375 AGATTTGGCA TTTGTTGCTA AAATTCTTCT CTTTTTCTAG ACTTGGTTTT GTTTTATGTT 7742 .......... .......... .......... .......... .......... .......... 375 CATCTAAGCT TTATGCATTG TCTTTTCTTT GTGCACAGAA AGTTCTCAAC TTTTTGGTGG 7682 .......... .......... .......... .......... .......... .......... 375 ATTGGCTGTA AAGTCTATTT TTTTGAGAAT TGACGGTGTT ATGATAGAAT GCTAGTTCTT 7622 .......... .......... .......... .......... .......... .......... 375 TAGATTTGAC TTCTACGTTA TTCGTTTTGT TTATAATTAG TTATTGGATA AATTGACAAG 7562 .......... .......... .......... .......... .......... .......... 375 TGAGTCGAGA TCTGATTGTT GTATTCGTAT GTCTCTGTTT CTACAAAAAA AATTGAACTT 7502 .......... .......... .......... .......... .......... .......... 375 AATTTTGGTT CATGTTGAAT TCCCACTTTT CAACTTGGTT TTGGCATATG TTGAGTTCCC 7442 .......... .......... .......... .......... .......... .......... 375 ATCAAAGTAT GATACACATA TTTTCTTTTT TTCATAAAAG TTCCTCACCT TTTTGAGATT 7382 .......... .......... .......... .......... .......... .......... 375 TATTGAGGTT GGTAGTATAA AGTTCAGTTT TTGAGATTTG ATGGTGTTAT GACATGATGG 7322 .......... .......... .......... .......... .......... .......... 375 CAATTCTGGA ATTTGACTTC CACATTCTTG GTTCTTGATT ATAACTTATA AGTATGTAAG 7262 .......... .......... .......... .......... .......... .......... 375 ATATCTTGTA GATCCGAAAA GTCTTGGCTA CTTTAACTAT TTAGGACGAT GGAATATGCC 7202 .......... .......... .......... .......... .......... .......... 375 ATAAGGGTAA TTTTAATCGA GTTTTTCTAG AATTGAATAA TGGATGTGTT CAATCTATAT 7142 .......... .......... .......... .......... .......... .......... 375 TTTTTGAATC TTGTTTTGGT TCCGATAACT TTTCTCTTTA ACTGAATAAT GTAAGATTTT 7082 .......... .......... .......... .......... .......... .......... 375 ACAGTTGCTA TTAAGTCTAA TTCAATCATT TTAGTAAAAA ATTACTTACC AGACATAGAA 7022 .......... .......... .......... .......... .......... .......... 375 ACAAATGGCA ATGTTAGCTA GAAAAATCTT GAGTCTTGAT TATGTATCAT TGTTACTTGA 6962 .......... .......... .......... .......... .......... .......... 375 AGCAATGGCA AAGAAAGCGG TATATATGCC AATGTAGCTG TTATGCTCAA TTTTGTCTAG 6902 .......... .......... .......... .......... .......... .......... 375 ATGCAGTTGG GAACCTATGA TAAGAACGAA TTAGACAGAC TGTCAATTGG ATGTATATTA 6842 .......... .......... .......... .......... .......... .......... 375 GGAATTGGAA TTCAAGTCAT GCTTTTCTTT CTCCGAAAAG CCAATCCAAA TGAACTTCTC 6782 .......... .......... .......... .......... .......... .......... 375 AACGGATCAT ACTTATATGG AATCTGTTTT ATTTGCTTGA TTGTGAAAAT AATTAGGACC 6722 .......... .......... .......... .......... .......... .......... 375 AACAACCTGG CTTACCTACG TATGGTATTA TGGTAGACTA AGGAGTCTCA CGGATTGATA 6662 .......... .......... .......... .......... .......... .......... 375 AAAAATCTCA GAGATTCTTT TGATGTTAAA TGGTGCCATA TTTATAACTT AGGTAGTCTC 6602 .......... .......... .......... .......... .......... .......... 375 TCTGTTAAGC CCTTAGCTAA CTAAGTTTTG GCTGGACGGG AGTGTATATT TGTTGCTTTG 6542 .......... .......... .......... .......... .......... .......... 375 AGCCGTGAGC TGCTATGTGA TACTTGCATG ACCTTATTTT GTTATTCAAA TCTGTTCTTG 6482 .......... .......... .......... .......... .......... .......... 375 TCTTGCAAAT ATCATTTGAA TCTTGAAAAT GAATGACTTT GTGCTCACTG TTTCCAAAAT 6422 .......... .......... .......... .......... .......... .......... 375 TGAGAACTTT TAGAACTTAA TGTCCATAAT ATAGATCGAG GAGTATTAAC TCTTGATCTA 6362 .......... .......... .......... .......... .......... .......... 375 TCAGAATGAG TGGATCAGAT ACAAGGCCGT TTGCCCAAGT TCAAGATGTT AGCTTGAGCC 6302 .......... .......... .......... .......... .......... .......... 375 CTGACATGGT CCGAGATCCC TATCTTTAAG GCCATTAAAG AACCCAGGGC CAGGGAAATG 6242 .......... .......... .......... .......... .......... .......... 375 TGATAAACAG AATGTTAACA TTTGCAGCAT ATATAACCAC AAATGAGGTT TGTACTCCAC 6182 .......... .......... .......... .......... .......... .......... 375 AAGCTTCATT TAATCACGAG ATGAAATGAG CAGAGGATTA TGTCATCAAA ATCAAAGTCA 6122 .......... .......... .......... .......... .......... .......... 375 GTGTTAATAA GGTGCATCAT TTTGCTTCCT GGTGTGATGG AGACAATGAA GTAGTTAATA 6062 .......... .......... .......... .......... .......... .......... 375 GCGACTTAAG GAAATTCAGA TACATACTTT TGAAGGAAAT ATATGTAGTA ATATTAAGTT 6002 .......... .......... .......... .......... .......... .......... 375 TTACAGACTC TTTATAGGTG CAGGTGCTGT ACTTGAACTT TGCATTCACG AGCTTATTTA 5942 .......... .......... .......... .......... .......... .......... 375 TCACACTTTG CCTTGGAATG ATACTCTCTG CTGTCGGGAA TCCCAACTTT TATTTATACC 5882 .......... .......... .......... .......... .......... .......... 375 GTTATAGTAT TAGGTGTGCA AATTACATGT TATGGTGGTG TTCTATATGT TCTTCATACT 5822 .......... .......... .......... .......... .......... .......... 375 CCCAATCATA ACTGAAATAA CCATTTTCAT GCAGCTCATT CGGATACAAC GGTTGCAAGG 5762 |||||| |||||||||| |||||||||| .......... .......... .......... ....CTCATT CGGATACAAC GGTTGCAAGG 401 ATACTGGTGG GAAACAAATG TGACTTGGAG AATA 5728 |||||||||| |||||||||| |||||||||| |||| ATACTGGTGG GAAACAAATG TGACTTGGAG AATA 435 hqPGS_C09HBa0109D11.1-_SGN-E311658+ (8761 8387,5787 5728) ******************************************************************************** EST sequence 103 +strand 338 n (File: SGN-E375387+) 1 CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 61 AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 121 CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 181 AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCACAC 241 TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 301 GTTTAGAGCT GGGACTTCTG CTTATTATCG TGGTGCTT Predicted gene structure (within gDNA segment 9465 to 7855): Exon 1 8802 8465 ( 338 n); cDNA 1 338 ( 338 n); score: 0.994 MATCH C09HBa0109D11.1- SGN-E375387+ 0.994 338 1.000 C PGS_C09HBa0109D11.1-_SGN-E375387+ (8802 8465) Alignment (genomic DNA sequence = upper lines): CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 8743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCCCCCT CTCTCTCTCT CTAGATCACC AGTTTGCATT CTTTCTCTCT CTAAACCTCA 60 AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 8683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTTTCA ATTTTTCAGC AAATGGACTC TTCAGATGAT GAGGGTGAGG AGTATCTTTT 120 CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 8623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATTGTA ATCATTGGTG ATTCTGCAGT AGGTAAATCT AATTTGCTTA CACGTTATGC 180 AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCAAAC 8563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAGAAATGAG TTTAATTTGC ATTCAAAAGC AACTATTGGA GTTGAGTTTC AGACCCACAC 240 TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 8503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAAATT GATGGAAAAG AAGTTAAAGC TCAGATTTGG GATACTGCTG GACAAGAAAG 300 GTTTAGAGCT GTGACTTCTG CTTATTATCG TGGTGCTT 8465 |||||||||| | |||||||| |||||||||| |||||||| GTTTAGAGCT GGGACTTCTG CTTATTATCG TGGTGCTT 338 hqPGS_C09HBa0109D11.1-_SGN-E375387+ (8802 8465) ******************************************************************************** EST sequence 114 +strand 294 n (File: SGN-E206630+) 1 ACCCCTTCCC CCCTCTCTCT CTCTCTAGAT CACCAGATTG CATTCTTTCT CTCTCTAAAC 61 CTCAAAAAGT TTCAATTTTT CAGCAAATGG ACTCTTCAGA AGATGAGGGT GAGGAGTATC 121 TTTTCAAGAC TGTAATCATT GGTGATTCTG CAGTAGGTAA ATCTAATTTG CTTACACGTT 181 ATGCAAGAAA TGAGTTTAAT TTGCATTCAA AAGCAACTAT TGGAGTTGAG TTTCACACCC 241 ACACTCTTGA AATTGATGGA AAAGAAGCTA AAGCTCAGAT TTGGGATACT GCTG Predicted gene structure (within gDNA segment 9406 to 7903): Exon 1 8806 8513 ( 294 n); cDNA 1 294 ( 294 n); score: 0.980 MATCH C09HBa0109D11.1- SGN-E206630+ 0.980 294 1.000 C PGS_C09HBa0109D11.1-_SGN-E206630+ (8806 8513) Alignment (genomic DNA sequence = upper lines): ACCCCTTCCC CCCTCTCTCT CTCTCTAGAT CACCAGTTTG CATTCTTTCT CTCTCTAAAC 8747 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ACCCCTTCCC CCCTCTCTCT CTCTCTAGAT CACCAGATTG CATTCTTTCT CTCTCTAAAC 60 CTCAAAAAGT TTCAATTTTT CAGCAAATGG ACTCTTCAGA TGATGAGGGT GAGGAGTATC 8687 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTCAAAAAGT TTCAATTTTT CAGCAAATGG ACTCTTCAGA AGATGAGGGT GAGGAGTATC 120 TTTTCAAGAT TGTAATCATT GGTGATTCTG CAGTAGGTAA ATCTAATTTG CTTACACGTT 8627 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAAGAC TGTAATCATT GGTGATTCTG CAGTAGGTAA ATCTAATTTG CTTACACGTT 180 ATGCAAGAAA TGAGTTTAAT TTGCATTCAA AAGCAACTAT TGGAGTTGAG TTTCAGACCC 8567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ATGCAAGAAA TGAGTTTAAT TTGCATTCAA AAGCAACTAT TGGAGTTGAG TTTCACACCC 240 AAACTCTTGA AATTGATGGA AAAGAAGTTA AAGCTCAGAT TTGGGATACT GCTG 8513 | |||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||| ACACTCTTGA AATTGATGGA AAAGAAGCTA AAGCTCAGAT TTGGGATACT GCTG 294 hqPGS_C09HBa0109D11.1-_SGN-E206630+ (8806 8513) ******************************************************************************** EST sequence 130 +strand 188 n (File: SGN-E261008+) 1 CCAGTTTGCA TTCTTTCTCT CTCTAAACCT CAAAAAGTTT CAATTTTTCA GCAAATGGAC 61 TCTTCAGATG ATGAGGGTGA GGAGTATCTT TTCAAGATTG TAATCATTGG TGATTCTGCA 121 GTAGGTATAT CTAATTTGCT TACACGTTAT GCAAGAAATG AGTTTAATTT GCATTCAAAA 181 GCATCTAT Predicted gene structure (within gDNA segment 9374 to 7932): Exon 1 8774 8587 ( 188 n); cDNA 1 188 ( 188 n); score: 0.989 MATCH C09HBa0109D11.1- SGN-E261008+ 0.989 188 1.000 C PGS_C09HBa0109D11.1-_SGN-E261008+ (8774 8587) Alignment (genomic DNA sequence = upper lines): CCAGTTTGCA TTCTTTCTCT CTCTAAACCT CAAAAAGTTT CAATTTTTCA GCAAATGGAC 8715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTTGCA TTCTTTCTCT CTCTAAACCT CAAAAAGTTT CAATTTTTCA GCAAATGGAC 60 TCTTCAGATG ATGAGGGTGA GGAGTATCTT TTCAAGATTG TAATCATTGG TGATTCTGCA 8655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCAGATG ATGAGGGTGA GGAGTATCTT TTCAAGATTG TAATCATTGG TGATTCTGCA 120 GTAGGTAAAT CTAATTTGCT TACACGTTAT GCAAGAAATG AGTTTAATTT GCATTCAAAA 8595 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGGTATAT CTAATTTGCT TACACGTTAT GCAAGAAATG AGTTTAATTT GCATTCAAAA 180 GCAACTAT 8587 ||| |||| GCATCTAT 188 hqPGS_C09HBa0109D11.1-_SGN-E261008+ (8774 8587) ******************************************************************************** EST sequence 92 +strand 783 n (File: SGN-E213196+) 1 TATATGAGAG CTATTTCTGA ACTATTTTTA GTGAAAATCT TCCCATTTGT TAGAAATAAA 61 AAAGTTTCAA GAAAGCCTAT TTTTTTTCCT ATTAGAAATA TTAATATGTC TGAATCAAAT 121 CAATATGATT CTTGTTTTGA TAGACCAAGA TTGGTTATTA AGAAAGTTTT GGCTAAACCT 181 CAAAGTGAAG GGAATGGAGC TGTTGTTAGA AGAAGCATTG GAAGGCATGA ATTGAGGAAT 241 CTTGATCCTT TCCTAATGTT GGATGAATTT TCAGTTTCTG CTCCTGCTGG TTTTCCTGAT 301 CATCCACACA GAGGTTTTGA GACAGTAACT TACATGCTAC AGGGAGCTTT TACTCATCAA 361 GATTTTGCTG GTCACAAGGG CACAATTAAT ACTGGTGATG TGCAGTGGAT GACAGCAGGA 421 AGAGGTATAA TTCATTCAGA AATGCCTGCA GGAGAAGGCA GTCAAAAGGG GTTGCAACTT 481 TGGATAAATC TCTCTTCTAA GGACAAAATG ATTGAGCCAA GGTATCAAGA ACTGCTGAAA 541 GAAGACATAC CAAGAGCAGA GAATGATGGT GTTAAAGTAA AAGTTATAGC AGGTGAAGCA 601 ATGGGAGTCC AATCCCCGGT TTACACACAA ACGCCTACAA TGTACCTCGA TTTCACCCCT 661 ACACCAACAG CTTACTATCA TNCAGCCATC CCTGAATCTT GGAAACGCTT CGTATATATA 721 GTTGAAAGGA GAAGTGTCTT CGGAATTCCG AGNTCAGGTC CTGTATCAGC TCACCATTGC 781 TTG Predicted gene structure (within gDNA segment 14007 to 7076): Exon 1 12007 11924 ( 84 n); cDNA 141 224 ( 84 n); score: 0.905 Intron 1 11923 11730 ( 194 n); Pd: 1.000 (s: 0.86), Pa: 0.993 (s: 0.80) Exon 2 11729 11680 ( 50 n); cDNA 225 274 ( 50 n); score: 0.800 Intron 2 11679 11590 ( 90 n); Pd: 0.987 (s: 0.80), Pa: 1.000 (s: 0.86) Exon 3 11589 11522 ( 68 n); cDNA 275 342 ( 68 n); score: 0.838 Intron 3 11521 11338 ( 184 n); Pd: 0.999 (s: 0.88), Pa: 0.997 (s: 0.92) Exon 4 11337 11275 ( 63 n); cDNA 343 405 ( 63 n); score: 0.937 Intron 4 11274 11070 ( 205 n); Pd: 0.999 (s: 0.92), Pa: 1.000 (s: 0.92) Exon 5 11069 10966 ( 104 n); cDNA 406 509 ( 104 n); score: 0.913 Intron 5 10965 10657 ( 309 n); Pd: 0.985 (s: 0.92), Pa: 0.999 (s: 0.84) Exon 6 10656 10383 ( 274 n); cDNA 510 783 ( 274 n); score: 0.710 MATCH C09HBa0109D11.1- SGN-E213196+ 0.811 643 0.821 C PGS_C09HBa0109D11.1-_SGN-E213196+ (12007 11924,11729 11680,11589 11522,11337 11275,11069 10966,10656 10383) Alignment (genomic DNA sequence = upper lines): TAGACCAAGA TTGGTTGTTA AGAAAGTTTT GGCTAGAGCT CAAAATGAAG GTGATGGTGC 11948 |||||||||| |||||| ||| |||||||||| ||||| | || |||| ||||| | |||| || TAGACCAAGA TTGGTTATTA AGAAAGTTTT GGCTAAACCT CAAAGTGAAG GGAATGGAGC 200 TATTGTTAGA AGAAGCATTG GAAGGTAACT ATGTTTCTAT ACTTCTTTCC TTTTTCTTGA 11888 | |||||||| |||||||||| |||| TGTTGTTAGA AGAAGCATTG GAAG...... .......... .......... .......... 224 TTTTTTATCA TCGTTGTGAT AATCGAGAAA TCTCTGACGA TCATAAATAT GTTGGTGAAT 11828 .......... .......... .......... .......... .......... .......... 224 AATAATCACA TCTTTTTATT TTTCTCCAAA TTAGATACCA TATATCAGAA ACACGACTCG 11768 .......... .......... .......... .......... .......... .......... 224 AATACTGATT GTTTTTTTTT TATATAATAT TTGATCAGGC CTGAATTGCA GAATCTTGAT 11708 || ||||||| |||||||||| .......... .......... .......... ........GC ATGAATTGAG GAATCTTGAT 246 CCATTCCTCA TGTTAGATGA GTTTAGTGGT AATTTTTTTT TCTCTTAGTA TATTATTTTG 11648 || ||||| | |||| ||||| ||| | CCTTTCCTAA TGTTGGATGA ATTTTCAG.. .......... .......... .......... 274 TGGATTTTAT TTTGATTTTG ACTTATTAAA AAGCTATGTT ATTTTTGGCT TCTTGCAGTT 11588 || .......... .......... .......... .......... .......... ........TT 276 TCACAACCTG CTGGATTTCC TGACCATCCA CACAGAGGTT TTGAGACTGT CACTTATATG 11528 || |||| |||| ||||| ||| |||||| |||||||||| ||||||| || ||||| ||| TCTGCTCCTG CTGGTTTTCC TGATCATCCA CACAGAGGTT TTGAGACAGT AACTTACATG 336 TTGCAGGTAA AAATTCATTT TAATTTCTTT TTTTTTTGGG TGAAAGTTTA ACTTTTGTAC 11468 | ||| CTACAG.... .......... .......... .......... .......... .......... 342 ACCGACCAAA AAAATATTGA TATATACTAT TAGGTATCGC GATGTATATA AGTTAAACTC 11408 .......... .......... .......... .......... .......... .......... 342 TGTATTTGGT GTATGGATTA TGGAGATTGA AAATTCTAAT GTGATTTAAT TTTGTGGTGT 11348 .......... .......... .......... .......... .......... .......... 342 TTAATTTTAG GGAGCTTTTA CTCATCAAGA TTTTGCTGGT CACAAGGGTA CAATCAGGAC 11288 |||||||||| |||||||||| |||||||||| |||||||| | |||| | || .......... GGAGCTTTTA CTCATCAAGA TTTTGCTGGT CACAAGGGCA CAATTAATAC 392 TGGTGATGTG CAGGTAATAA GTTTGCTCAC AACACCACTA TCAACTTAAG TTACGTACAC 11228 |||||||||| ||| TGGTGATGTG CAG....... .......... .......... .......... .......... 405 TGACAGTGTG AAGATTTTTA ATAATATCAG TGTAATATAA CATAACATGT GATAGTTACC 11168 .......... .......... .......... .......... .......... .......... 405 TCCTAAAGTG GGACTTCATG ACGCGATAGA ATATCGAATT TATGAAATTT AAAGTGTGTT 11108 .......... .......... .......... .......... .......... .......... 405 TTATGATTTT ATTTTTTTTC CCGTTTGGTT TAATGCAGTG GATGACAGCA GGAAGAGGTA 11048 || |||||||||| |||||||||| .......... .......... .......... ........TG GATGACAGCA GGAAGAGGTA 427 TAGTTCATTC AGAAATGCCT GCTGGACCAG GTACTCAAAA GGGGTTGCAG CTTTGGATAA 10988 || ||||||| |||||||||| || ||| || | | |||||| ||||||||| |||||||||| TAATTCATTC AGAAATGCCT GCAGGAGAAG GCAGTCAAAA GGGGTTGCAA CTTTGGATAA 487 ATTTATCTTC TAAGGACAAA ATGTAAGTTA CATTGATTCA ATTTTGACTT TAGTGTTTGA 10928 || | ||||| |||||||||| || ATCTCTCTTC TAAGGACAAA AT........ .......... .......... .......... 509 AAAATCTAGT ATTTCATTTT TTAACATATT CCTATAAAAC ATGTACTCTG ATCAAAATTC 10868 .......... .......... .......... .......... .......... .......... 509 ATAAAACTTA AGCGTTTAAG ATTTAATATA TATGTATTAA AGTATGACTT GACCTATATG 10808 .......... .......... .......... .......... .......... .......... 509 AGTCAGACAA AGGGTGTTCG AGTAACCAGT CTTCAATCTG TGTGGCTAAA ACATGCTTTA 10748 .......... .......... .......... .......... .......... .......... 509 GTCACAACAA CTCATGACCC TGTTACTTCA CGAGCCTTCA TTGCCCCGTT TTTTGTAACT 10688 .......... .......... .......... .......... .......... .......... 509 TCACTCATTT TGTCCATCCA TATTGATGCA GGATTGAGCC AAGGTATCAA GAATTGCTAC 10628 ||||||||| |||||||||| ||| |||| .......... .......... .......... .GATTGAGCC AAGGTATCAA GAACTGCTGA 538 ACCAAGACAT ACCAAAGGCT GAAAAAGATG GTGTTTCGGT TACTATTTTA GCAGGGGAAT 10568 | ||||||| ||||| || || || |||| ||||| || | || || ||||| ||| AAGAAGACAT ACCAAGAGCA GAGAATGATG GTGTTAAAGT AAAAGTTATA GCAGGTGAAG 598 CCATGGGGAA AAAATCACAA GTTTTCACGC GAACGCCTAC AATGTACCTT GATTTCACCC 10508 | ||||| |||| | |||| ||| | ||||||||| ||||||||| |||||||||| CAATGGGAGT CCAATCCCCG GTTTACACAC AAACGCCTAC AATGTACCTC GATTTCACCC 658 TAAAACCAGG TTCTGAGCAT CATCAACCGA TCCCCGAGAC CTGGAATGCC TTCCTCTACA 10448 | |||| || | || ||| | | | |||| || | ||||| | ||| | || | CTACACCAAC AGCTTACTAT CATNCAGCCA TCCCTGAATC TTGGAAACGC TTCGTATATA 718 TAGTTG-AAG GAGAGGGAGC GTTTGGTTCT TCGGATTCAA CCACTACACC AGCTCACCAT 10389 |||||| ||| |||| | | || || | || ||| || | | |||||||||| TAGTTGAAAG GAGA-AGTGT CTTCGGAATT CCGAGNTCAG GTCCTGTATC AGCTCACCAT 777 TGCTTG 10383 |||||| TGCTTG 783 hqPGS_C09HBa0109D11.1-_SGN-E213196+ (12007 11924,11729 11680,11589 11522,11337 11275,11069 10966,10656 10383) ******************************************************************************** EST sequence 37 +strand 594 n (File: SGN-E275986+) 1 TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 61 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 121 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 181 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 241 GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 301 ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 361 CCTTGTGATA TGAATCTTAT TACAGATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT 421 GAAGGTTGCC AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA 481 GCTAAAGAGC AGATAGGGTA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT 541 GGTTTTGGAT TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA ATCC Predicted gene structure (within gDNA segment 13244 to 16417): Exon 1 13844 14228 ( 385 n); cDNA 1 385 ( 385 n); score: 1.000 Intron 1 14229 15598 (1370 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 15599 15807 ( 209 n); cDNA 386 594 ( 209 n); score: 0.995 MATCH C09HBa0109D11.1+ SGN-E275986+ 0.998 594 1.000 C PGS_C09HBa0109D11.1+_SGN-E275986+ (13844 14228,15599 15807) Alignment (genomic DNA sequence = upper lines): TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 13903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 60 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 13963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 120 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 14023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 180 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 14083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 240 GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 14143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 300 ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 14203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 360 CCTTGTGATA TGAATCTTAT TACAGGTAAT TCAACATTTT TTTTTACTTA AACCGCTGTT 14263 |||||||||| |||||||||| ||||| CCTTGTGATA TGAATCTTAT TACAG..... .......... .......... .......... 385 TTTTAAGGAT TTGGAGTAGG GGAAATGGGG CGGGGATTAT GAGGTGGGGA ATCGAGTTGT 14323 .......... .......... .......... .......... .......... .......... 385 CAGGTAGTCA ATCGACTGAG CTATTTAGAT TGTACTTGAT CTAAATGATG GGTTTGTTCC 14383 .......... .......... .......... .......... .......... .......... 385 AAGATTGTTT TTTTCTTTGT GTTTGTTGAA TTATGTTGGG GGTTATTAGT TGTATTGGTT 14443 .......... .......... .......... .......... .......... .......... 385 TGATTTAAAT GATGGGTTTG TTCCAAAATT TGTTTTTTTT GTGTGTGGTA TGCGTTTTAA 14503 .......... .......... .......... .......... .......... .......... 385 TGCAGCTACT TGAGCATTTC TTTGATCAAA ATTAGGAATT GAATACTTAG GTAGTTAATC 14563 .......... .......... .......... .......... .......... .......... 385 AACTGAGTTA GTAAGTCTGT ACTTGATCTA TATCATGAGT TTGTTAAAAA AATGTTTTTT 14623 .......... .......... .......... .......... .......... .......... 385 TTTTGTGTGT TGTGTTGAAT TTATTGGGGG TTTAGTTGTA TTGCTTTGAT TTGAAGTATG 14683 .......... .......... .......... .......... .......... .......... 385 TATTTGCTCC AAAATTTGTT GTTTTTTGAT TTTCTGTGTT GAGTACTTAT ATGGTTTGAT 14743 .......... .......... .......... .......... .......... .......... 385 CTAGATCATG GGTGTCTTCG AAAATTTGTT TTTTTTTAAT GTGTTGTGTG TGTGATATGA 14803 .......... .......... .......... .......... .......... .......... 385 ATTTTATTGC AGGTATTTGT ATTGCTTTGA TCTAAATTTT GGGTTTGTTT CAAATTTCGC 14863 .......... .......... .......... .......... .......... .......... 385 TTTTTGTTTG TTTGGGGTTG GGTGTTAGAG TTGATGTGGT AGGGTCTAGG AGATTGAGAT 14923 .......... .......... .......... .......... .......... .......... 385 CTTCAAATGG TTTTCTCAAA AAATGATCTT GAAAGGTTGA GTTGATCTGT TTTGATGATA 14983 .......... .......... .......... .......... .......... .......... 385 ATTCAGGTGG ATCAAAGATA TAAGGAGATT TGTAAAACGA GGAAATGGGA TTTTAGAAAT 15043 .......... .......... .......... .......... .......... .......... 385 GAGAATTTGG GTTTCTAGAG TGATTGAAAT AGTTGAATGG GGGACGCGTA ACAGTTGGGA 15103 .......... .......... .......... .......... .......... .......... 385 AAAAAGGAGG AGTGTAGTTT ACTACATTGT GATACGAATC TCATATACAG GAACTTAATC 15163 .......... .......... .......... .......... .......... .......... 385 ATGGGTTGTT CCAAAATTTG TTTTTTTTTC CGTGTGTGTA AGTAATTTGT AGATTGGTAT 15223 .......... .......... .......... .......... .......... .......... 385 TAGACTAAGA TCATCATAGA ATATTGAGTA AAAAAGGATC TTGAAAGTGC TTAGTTGATC 15283 .......... .......... .......... .......... .......... .......... 385 TGTTTTGATG ATTATTGAGA TGGATCCCGA GTTTTAGGAA GATTTGTGAA ATGGGGAACT 15343 .......... .......... .......... .......... .......... .......... 385 AGGATTTAGA AATGAGAATT TGGATCCAGA GCGATTAAAA TTATTGAATG GTGGGAGATC 15403 .......... .......... .......... .......... .......... .......... 385 AGAAAAAATT GGCAAAAAAA AGAGAATGGT CGTGATCCCA CAAGTGGGAT CTTGAAAGGC 15463 .......... .......... .......... .......... .......... .......... 385 TAGGATGTAC GCAAACCTTA CCCTTGATTT CCGACACTTG GCTATACAGT TTATTACCTC 15523 .......... .......... .......... .......... .......... .......... 385 TTGCTTATTT AATATTGGAA AAGTAACAGG CAATTAATAT TGAACTGTTG GATGTGTTGT 15583 .......... .......... .......... .......... .......... .......... 385 TTCATCCTTG ATCAGATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT GAAGGTTGCC 15643 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....ATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT GAAGGTTGCC 430 AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA GCTAAAGAGC 15703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA GCTAAAGAGC 490 AGATAGGGGA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT GGTTTTGGAT 15763 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAGGGTA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT GGTTTTGGAT 550 TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA ATCC 15807 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA ATCC 594 hqPGS_C09HBa0109D11.1+_SGN-E275986+ (13844 14228,15599 15807) ******************************************************************************** EST sequence 36 +strand 591 n (File: SGN-E276087+) 1 TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 61 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 121 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 181 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 241 GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 301 ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 361 CCTTGTGATA TGAATCTTAT TACAGATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT 421 GAAGGTTGCC AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA 481 GCTAAAGAGC AGATAGGGTA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT 541 GGTTTTGGAT TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA A Predicted gene structure (within gDNA segment 13244 to 16414): Exon 1 13844 14228 ( 385 n); cDNA 1 385 ( 385 n); score: 1.000 Intron 1 14229 15598 (1370 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 15599 15804 ( 206 n); cDNA 386 591 ( 206 n); score: 0.995 MATCH C09HBa0109D11.1+ SGN-E276087+ 0.998 591 1.000 C PGS_C09HBa0109D11.1+_SGN-E276087+ (13844 14228,15599 15804) Alignment (genomic DNA sequence = upper lines): TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 13903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 60 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 13963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 120 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 14023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 180 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 14083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 240 GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 14143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATGGA 300 ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 14203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGGTTAC CTGCTGAAAC GGGTGAAGAA GATGATACTG GTTTTGATGA GTGTATTGTT 360 CCTTGTGATA TGAATCTTAT TACAGGTAAT TCAACATTTT TTTTTACTTA AACCGCTGTT 14263 |||||||||| |||||||||| ||||| CCTTGTGATA TGAATCTTAT TACAG..... .......... .......... .......... 385 TTTTAAGGAT TTGGAGTAGG GGAAATGGGG CGGGGATTAT GAGGTGGGGA ATCGAGTTGT 14323 .......... .......... .......... .......... .......... .......... 385 CAGGTAGTCA ATCGACTGAG CTATTTAGAT TGTACTTGAT CTAAATGATG GGTTTGTTCC 14383 .......... .......... .......... .......... .......... .......... 385 AAGATTGTTT TTTTCTTTGT GTTTGTTGAA TTATGTTGGG GGTTATTAGT TGTATTGGTT 14443 .......... .......... .......... .......... .......... .......... 385 TGATTTAAAT GATGGGTTTG TTCCAAAATT TGTTTTTTTT GTGTGTGGTA TGCGTTTTAA 14503 .......... .......... .......... .......... .......... .......... 385 TGCAGCTACT TGAGCATTTC TTTGATCAAA ATTAGGAATT GAATACTTAG GTAGTTAATC 14563 .......... .......... .......... .......... .......... .......... 385 AACTGAGTTA GTAAGTCTGT ACTTGATCTA TATCATGAGT TTGTTAAAAA AATGTTTTTT 14623 .......... .......... .......... .......... .......... .......... 385 TTTTGTGTGT TGTGTTGAAT TTATTGGGGG TTTAGTTGTA TTGCTTTGAT TTGAAGTATG 14683 .......... .......... .......... .......... .......... .......... 385 TATTTGCTCC AAAATTTGTT GTTTTTTGAT TTTCTGTGTT GAGTACTTAT ATGGTTTGAT 14743 .......... .......... .......... .......... .......... .......... 385 CTAGATCATG GGTGTCTTCG AAAATTTGTT TTTTTTTAAT GTGTTGTGTG TGTGATATGA 14803 .......... .......... .......... .......... .......... .......... 385 ATTTTATTGC AGGTATTTGT ATTGCTTTGA TCTAAATTTT GGGTTTGTTT CAAATTTCGC 14863 .......... .......... .......... .......... .......... .......... 385 TTTTTGTTTG TTTGGGGTTG GGTGTTAGAG TTGATGTGGT AGGGTCTAGG AGATTGAGAT 14923 .......... .......... .......... .......... .......... .......... 385 CTTCAAATGG TTTTCTCAAA AAATGATCTT GAAAGGTTGA GTTGATCTGT TTTGATGATA 14983 .......... .......... .......... .......... .......... .......... 385 ATTCAGGTGG ATCAAAGATA TAAGGAGATT TGTAAAACGA GGAAATGGGA TTTTAGAAAT 15043 .......... .......... .......... .......... .......... .......... 385 GAGAATTTGG GTTTCTAGAG TGATTGAAAT AGTTGAATGG GGGACGCGTA ACAGTTGGGA 15103 .......... .......... .......... .......... .......... .......... 385 AAAAAGGAGG AGTGTAGTTT ACTACATTGT GATACGAATC TCATATACAG GAACTTAATC 15163 .......... .......... .......... .......... .......... .......... 385 ATGGGTTGTT CCAAAATTTG TTTTTTTTTC CGTGTGTGTA AGTAATTTGT AGATTGGTAT 15223 .......... .......... .......... .......... .......... .......... 385 TAGACTAAGA TCATCATAGA ATATTGAGTA AAAAAGGATC TTGAAAGTGC TTAGTTGATC 15283 .......... .......... .......... .......... .......... .......... 385 TGTTTTGATG ATTATTGAGA TGGATCCCGA GTTTTAGGAA GATTTGTGAA ATGGGGAACT 15343 .......... .......... .......... .......... .......... .......... 385 AGGATTTAGA AATGAGAATT TGGATCCAGA GCGATTAAAA TTATTGAATG GTGGGAGATC 15403 .......... .......... .......... .......... .......... .......... 385 AGAAAAAATT GGCAAAAAAA AGAGAATGGT CGTGATCCCA CAAGTGGGAT CTTGAAAGGC 15463 .......... .......... .......... .......... .......... .......... 385 TAGGATGTAC GCAAACCTTA CCCTTGATTT CCGACACTTG GCTATACAGT TTATTACCTC 15523 .......... .......... .......... .......... .......... .......... 385 TTGCTTATTT AATATTGGAA AAGTAACAGG CAATTAATAT TGAACTGTTG GATGTGTTGT 15583 .......... .......... .......... .......... .......... .......... 385 TTCATCCTTG ATCAGATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT GAAGGTTGCC 15643 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....ATGAT GATTTTAGAG AGCTCGTTGA CAAAGTTCCT GAAGGTTGCC 430 AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA GCTAAAGAGC 15703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACAAT TGTATCTGAC TCATGCCACA GTGGTGGCCT CATTGACAAA GCTAAAGAGC 490 AGATAGGGGA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT GGTTTTGGAT 15763 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAGGGTA GAGCCACAAG CAAGGTGATG ACGATGAAGG CCATGGATCT GGTTTTGGAT 550 TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA A 15804 |||||||||| |||||||||| |||||||||| |||||||||| | TCAAGAATTT CTTACGTCGA AATGTTGAAG ATGCATTTGA A 591 hqPGS_C09HBa0109D11.1+_SGN-E276087+ (13844 14228,15599 15804) ******************************************************************************** EST sequence 13 +strand 473 n (File: SGN-E285333+) 1 AAAGATCAAT TTTTTTTCTT GAAAAATTTC AATGGCGAAA AAAGCAGTAT TAATTGGAAT 61 CAATTATCCA GGAACAAAAG CAGAACTTAG AGGTTGTATT AACGATGTTA AGCGAATGTA 121 CAATTGTTTA CTTAATCGTT ACGGATTTGC TGAGGAAGAC ATTACTGTTC TTATAGATAC 181 TGATGATTCT TACACACAAC CAACTGGTCG GAATATACGT AAAGCTTTAT CGGATCTTGT 241 TGGATCTGCT GAATCAGGGG ATTGTTTGTT TGTGCATTAC AGTGGACATG GAACTAGGTT 301 ACCTGCTGAA ACGGGTGAAG AAGATGATAC TGGTTTTGAT GAGTGTATTG TTCCTTGTGA 361 TATGAATCTT ATTACAGATG ATGATTTTAG AGAGCTCGTT GACAAAGTTC CTGAAGGTTG 421 CCAGATCACA ATTGTATTCT GACTCATGCC ACAGTGGTGG CCTCATTGAC AAA Predicted gene structure (within gDNA segment 13252 to 16303): Exon 1 13852 14228 ( 377 n); cDNA 1 377 ( 377 n); score: 1.000 Intron 1 14229 15598 (1370 n); Pd: 0.986 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 15599 15693 ( 95 n); cDNA 378 473 ( 96 n); score: 0.974 MATCH C09HBa0109D11.1+ SGN-E285333+ 0.995 472 0.998 C PGS_C09HBa0109D11.1+_SGN-E285333+ (13852 14228,15599 15693) Alignment (genomic DNA sequence = upper lines): AAAGATCAAT TTTTTTTCTT GAAAAATTTC AATGGCGAAA AAAGCAGTAT TAATTGGAAT 13911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATCAAT TTTTTTTCTT GAAAAATTTC AATGGCGAAA AAAGCAGTAT TAATTGGAAT 60 CAATTATCCA GGAACAAAAG CAGAACTTAG AGGTTGTATT AACGATGTTA AGCGAATGTA 13971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTATCCA GGAACAAAAG CAGAACTTAG AGGTTGTATT AACGATGTTA AGCGAATGTA 120 CAATTGTTTA CTTAATCGTT ACGGATTTGC TGAGGAAGAC ATTACTGTTC TTATAGATAC 14031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTGTTTA CTTAATCGTT ACGGATTTGC TGAGGAAGAC ATTACTGTTC TTATAGATAC 180 TGATGATTCT TACACACAAC CAACTGGTCG GAATATACGT AAAGCTTTAT CGGATCTTGT 14091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTCT TACACACAAC CAACTGGTCG GAATATACGT AAAGCTTTAT CGGATCTTGT 240 TGGATCTGCT GAATCAGGGG ATTGTTTGTT TGTGCATTAC AGTGGACATG GAACTAGGTT 14151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCTGCT GAATCAGGGG ATTGTTTGTT TGTGCATTAC AGTGGACATG GAACTAGGTT 300 ACCTGCTGAA ACGGGTGAAG AAGATGATAC TGGTTTTGAT GAGTGTATTG TTCCTTGTGA 14211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGCTGAA ACGGGTGAAG AAGATGATAC TGGTTTTGAT GAGTGTATTG TTCCTTGTGA 360 TATGAATCTT ATTACAGGTA ATTCAACATT TTTTTTTACT TAAACCGCTG TTTTTTAAGG 14271 |||||||||| ||||||| TATGAATCTT ATTACAG... .......... .......... .......... .......... 377 ATTTGGAGTA GGGGAAATGG GGCGGGGATT ATGAGGTGGG GAATCGAGTT GTCAGGTAGT 14331 .......... .......... .......... .......... .......... .......... 377 CAATCGACTG AGCTATTTAG ATTGTACTTG ATCTAAATGA TGGGTTTGTT CCAAGATTGT 14391 .......... .......... .......... .......... .......... .......... 377 TTTTTTCTTT GTGTTTGTTG AATTATGTTG GGGGTTATTA GTTGTATTGG TTTGATTTAA 14451 .......... .......... .......... .......... .......... .......... 377 ATGATGGGTT TGTTCCAAAA TTTGTTTTTT TTGTGTGTGG TATGCGTTTT AATGCAGCTA 14511 .......... .......... .......... .......... .......... .......... 377 CTTGAGCATT TCTTTGATCA AAATTAGGAA TTGAATACTT AGGTAGTTAA TCAACTGAGT 14571 .......... .......... .......... .......... .......... .......... 377 TAGTAAGTCT GTACTTGATC TATATCATGA GTTTGTTAAA AAAATGTTTT TTTTTTGTGT 14631 .......... .......... .......... .......... .......... .......... 377 GTTGTGTTGA ATTTATTGGG GGTTTAGTTG TATTGCTTTG ATTTGAAGTA TGTATTTGCT 14691 .......... .......... .......... .......... .......... .......... 377 CCAAAATTTG TTGTTTTTTG ATTTTCTGTG TTGAGTACTT ATATGGTTTG ATCTAGATCA 14751 .......... .......... .......... .......... .......... .......... 377 TGGGTGTCTT CGAAAATTTG TTTTTTTTTA ATGTGTTGTG TGTGTGATAT GAATTTTATT 14811 .......... .......... .......... .......... .......... .......... 377 GCAGGTATTT GTATTGCTTT GATCTAAATT TTGGGTTTGT TTCAAATTTC GCTTTTTGTT 14871 .......... .......... .......... .......... .......... .......... 377 TGTTTGGGGT TGGGTGTTAG AGTTGATGTG GTAGGGTCTA GGAGATTGAG ATCTTCAAAT 14931 .......... .......... .......... .......... .......... .......... 377 GGTTTTCTCA AAAAATGATC TTGAAAGGTT GAGTTGATCT GTTTTGATGA TAATTCAGGT 14991 .......... .......... .......... .......... .......... .......... 377 GGATCAAAGA TATAAGGAGA TTTGTAAAAC GAGGAAATGG GATTTTAGAA ATGAGAATTT 15051 .......... .......... .......... .......... .......... .......... 377 GGGTTTCTAG AGTGATTGAA ATAGTTGAAT GGGGGACGCG TAACAGTTGG GAAAAAAGGA 15111 .......... .......... .......... .......... .......... .......... 377 GGAGTGTAGT TTACTACATT GTGATACGAA TCTCATATAC AGGAACTTAA TCATGGGTTG 15171 .......... .......... .......... .......... .......... .......... 377 TTCCAAAATT TGTTTTTTTT TCCGTGTGTG TAAGTAATTT GTAGATTGGT ATTAGACTAA 15231 .......... .......... .......... .......... .......... .......... 377 GATCATCATA GAATATTGAG TAAAAAAGGA TCTTGAAAGT GCTTAGTTGA TCTGTTTTGA 15291 .......... .......... .......... .......... .......... .......... 377 TGATTATTGA GATGGATCCC GAGTTTTAGG AAGATTTGTG AAATGGGGAA CTAGGATTTA 15351 .......... .......... .......... .......... .......... .......... 377 GAAATGAGAA TTTGGATCCA GAGCGATTAA AATTATTGAA TGGTGGGAGA TCAGAAAAAA 15411 .......... .......... .......... .......... .......... .......... 377 TTGGCAAAAA AAAGAGAATG GTCGTGATCC CACAAGTGGG ATCTTGAAAG GCTAGGATGT 15471 .......... .......... .......... .......... .......... .......... 377 ACGCAAACCT TACCCTTGAT TTCCGACACT TGGCTATACA GTTTATTACC TCTTGCTTAT 15531 .......... .......... .......... .......... .......... .......... 377 TTAATATTGG AAAAGTAACA GGCAATTAAT ATTGAACTGT TGGATGTGTT GTTTCATCCT 15591 .......... .......... .......... .......... .......... .......... 377 TGATCAGATG ATGATTTTAG AGAGCTCGTT GACAAAGTTC CTGAAGGTTG CCAGATCACA 15651 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATG ATGATTTTAG AGAGCTCGTT GACAAAGTTC CTGAAGGTTG CCAGATCACA 430 ATTGTA-TCT GACTCATGCC ACAGTGGTGG CCTCATTGAC AAA 15693 |||||| ||| |||||||||| |||||||||| |||||||||| ||| ATTGTATTCT GACTCATGCC ACAGTGGTGG CCTCATTGAC AAA 473 hqPGS_C09HBa0109D11.1+_SGN-E285333+ (13852 14228,15599 15693) ******************************************************************************** EST sequence 23 +strand 432 n (File: SGN-E341315+) 1 TTCAATCAAC AATCCCAAAA AATTCTCTAA ACTAAAAAGA TCAATTTTTT TTCTTGAAAA 61 ATTTCAATGG CGAAAAAAGC AGTATTAATT GGAATCAATT ATCCAGGAAC AAAAGCAGAA 121 CTTAGAGGTT GTATTAACGA TGTTAAGCGA ATGTACAATT GTTTACTTAA TCGTTACGGA 181 TTTGCTGAGG AAGACATTAC TGTTCTTATA GATACTGATG ATTCTTACAC ACAACCAACT 241 GGTCGGAATA TACGTAAAGC TTTATCGGAT CTTGTTGGAT CTGCTGAATC AAGGGATTGT 301 TTGTTTGTGC ATTACAGTGG ACATGGAACT AGGTTACCTG CTGAAACGGG TGAAGAAGAT 361 GATACTGGTT TTGATGAGTG TATTGTTCCT TGTGATATGA ATCTTATTAC AGATGATGAT 421 TTTAGAGAGC TC Predicted gene structure (within gDNA segment 13217 to 15038): Exon 1 13817 14228 ( 412 n); cDNA 1 412 ( 412 n); score: 0.998 Intron 1 14229 14270 ( 42 n); Pd: 0.986 (s: 1.00), Pa: 0.989 (s: 0) Exon 2 14271 14286 ( 16 n); cDNA 413 428 ( 16 n); score: 0.375 MATCH C09HBa0109D11.1+ SGN-E341315+ 0.998 428 0.991 C PGS_C09HBa0109D11.1+_SGN-E341315+ (13817 14228,14271 14286) Alignment (genomic DNA sequence = upper lines): TTCAATCAAC AATCCCAAAA AATTCTCTAA ACTAAAAAGA TCAATTTTTT TTCTTGAAAA 13876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATCAAC AATCCCAAAA AATTCTCTAA ACTAAAAAGA TCAATTTTTT TTCTTGAAAA 60 ATTTCAATGG CGAAAAAAGC AGTATTAATT GGAATCAATT ATCCAGGAAC AAAAGCAGAA 13936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAATGG CGAAAAAAGC AGTATTAATT GGAATCAATT ATCCAGGAAC AAAAGCAGAA 120 CTTAGAGGTT GTATTAACGA TGTTAAGCGA ATGTACAATT GTTTACTTAA TCGTTACGGA 13996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGAGGTT GTATTAACGA TGTTAAGCGA ATGTACAATT GTTTACTTAA TCGTTACGGA 180 TTTGCTGAGG AAGACATTAC TGTTCTTATA GATACTGATG ATTCTTACAC ACAACCAACT 14056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTGAGG AAGACATTAC TGTTCTTATA GATACTGATG ATTCTTACAC ACAACCAACT 240 GGTCGGAATA TACGTAAAGC TTTATCGGAT CTTGTTGGAT CTGCTGAATC AGGGGATTGT 14116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GGTCGGAATA TACGTAAAGC TTTATCGGAT CTTGTTGGAT CTGCTGAATC AAGGGATTGT 300 TTGTTTGTGC ATTACAGTGG ACATGGAACT AGGTTACCTG CTGAAACGGG TGAAGAAGAT 14176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTGTGC ATTACAGTGG ACATGGAACT AGGTTACCTG CTGAAACGGG TGAAGAAGAT 360 GATACTGGTT TTGATGAGTG TATTGTTCCT TGTGATATGA ATCTTATTAC AGGTAATTCA 14236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATACTGGTT TTGATGAGTG TATTGTTCCT TGTGATATGA ATCTTATTAC AG........ 412 ACATTTTTTT TTACTTAAAC CGCTGTTTTT TAAGGATTTG GAGTAGGGGA 14286 || | | || .......... .......... .......... ....ATGATG ATTTTAGAGA 428 hqPGS_C09HBa0109D11.1+_SGN-E341315+ (13817 14228) ******************************************************************************** EST sequence 4 +strand 298 n (File: SGN-E228220+) 1 TAAACTAAAT AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 61 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 121 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 181 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 241 GATCTTGTTG GATCTGCTGA ATCAAGGGAT TGTTTGTTTG AGCATTACAG TGGACATG Predicted gene structure (within gDNA segment 13154 to 14751): Exon 1 13844 14141 ( 298 n); cDNA 1 298 ( 298 n); score: 0.990 MATCH C09HBa0109D11.1+ SGN-E228220+ 0.990 298 1.000 C PGS_C09HBa0109D11.1+_SGN-E228220+ (13844 14141) Alignment (genomic DNA sequence = upper lines): TAAACTAAAA AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 13903 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTAAAT AGATCAATTT TTTTTCTTGA AAAATTTCAA TGGCGAAAAA AGCAGTATTA 60 ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 13963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAATCA ATTATCCAGG AACAAAAGCA GAACTTAGAG GTTGTATTAA CGATGTTAAG 120 CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 14023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATGTACA ATTGTTTACT TAATCGTTAC GGATTTGCTG AGGAAGACAT TACTGTTCTT 180 ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 14083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATACTG ATGATTCTTA CACACAACCA ACTGGTCGGA ATATACGTAA AGCTTTATCG 240 GATCTTGTTG GATCTGCTGA ATCAGGGGAT TGTTTGTTTG TGCATTACAG TGGACATG 14141 |||||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||||||| GATCTTGTTG GATCTGCTGA ATCAAGGGAT TGTTTGTTTG AGCATTACAG TGGACATG 298 hqPGS_C09HBa0109D11.1+_SGN-E228220+ (13844 14141) ******************************************************************************** EST sequence 28 +strand 703 n (File: SGN-E341713+) 1 ACCTTCCAGG TCGCCACCAT CGCCGTGAGG AAGAAGAGGA GAATTTTGCT GAGAGTAGTG 61 TGATTGAGAC GGAAGACGGT GATCAAGTTC ATGTGAAGAG CAAGTCCTTG CCTCTTTCCA 121 CTCTCATCGA GATACTTAAG CAGAAAACTG GTAAGGATGA TATTGATGTT GGGAAACTTA 181 GGCCAACACT CTTTGACGTC TTTGGCGAAG ATGCAAGTCC TAAGGTGAAG AAATTCATGA 241 AAATCATTTT TAACAAGCTA CAAAAGAATA ACGAGCAGGG TGGAGGCGGC GGGTTCATGG 301 GTATGGTTGG TAACTTGGCT CAAGAGTTTC TGAAACAGAA ACTTGATGAA AATGATGAGA 361 GCTATGCAAA ACCGGCCATG GAAACACACG TTGAAGGTAA ACAGGAGGTT TATGCCGGTT 421 CAGGTAATAG AGGTCTTCCA GACAGTGGCA TTCTCGTCAG TGGGTGCCAA ACAGACCAAA 481 CATCTGCGGA TGCAACCCCT GCAGGCGGAG AGTCTTATGG TGCTCTAAGC AACGCAATTC 541 AGGAAATCCT GGCCGAATCA GATGGTCCAG TCACCAATGA GGAGCTTGTT AGCAAGGCTA 601 GGAAAAAGAT GCAGAAACAA GGCTTCACAC AACGCCCAGG CCTCTACTGC GATGATCATC 661 ACGTTGATGC TCCTTTTTGT TTGTTGATTC TACTGTGCTA TGC Predicted gene structure (within gDNA segment 15218 to 17129): Exon 1 15818 16519 ( 702 n); cDNA 1 703 ( 703 n); score: 0.996 MATCH C09HBa0109D11.1+ SGN-E341713+ 0.996 702 0.999 C PGS_C09HBa0109D11.1+_SGN-E341713+ (15818 16519) Alignment (genomic DNA sequence = upper lines): ACCTTCCAGG TCGCCACCAT CGCCGTGAGG AAGAAGAGGA GAATTTTGCT GAGAGTAGTG 15877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTCCAGG TCGCCACCAT CGCCGTGAGG AAGAAGAGGA GAATTTTGCT GAGAGTAGTG 60 TGATTGAGAC GGAAGACGGT GATCAAGTTC ATGTGAAGAG CAAGTCCTTG CCTCTTTCCA 15937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGAGAC GGAAGACGGT GATCAAGTTC ATGTGAAGAG CAAGTCCTTG CCTCTTTCCA 120 CTCTCATCGA GATACTTAAG CAGAAAACTG GTAAGGATGA TATTGATGTT GGGAAACTTA 15997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCATCGA GATACTTAAG CAGAAAACTG GTAAGGATGA TATTGATGTT GGGAAACTTA 180 GGCCAACACT CTTTGACGTC TTTGGCGAAG ATGCAAGTCC TAAGGTGAAG AAATTCATGA 16057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAACACT CTTTGACGTC TTTGGCGAAG ATGCAAGTCC TAAGGTGAAG AAATTCATGA 240 AAATCATTTT TAACAAGCTA CAAAAGAATA ACGAGCAGGG TGGAGGCGGC GGGTTCATGG 16117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCATTTT TAACAAGCTA CAAAAGAATA ACGAGCAGGG TGGAGGCGGC GGGTTCATGG 300 GTATGGTTGG TAACTTGGCT CAAGAGTTTC TGAAACAGAA ACTTGATGAA AATGATGAGA 16177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGGTTGG TAACTTGGCT CAAGAGTTTC TGAAACAGAA ACTTGATGAA AATGATGAGA 360 GCTATGCAAA ACCGGCCATG GAAACACACG TTGAAGGTAA ACAGGAGGTT TATGCCGGTT 16237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATGCAAA ACCGGCCATG GAAACACACG TTGAAGGTAA ACAGGAGGTT TATGCCGGTT 420 CAGGTAATAG AGGTCTTCCA GACAGTGGCA TTCTCGTCAG TGGGTGCCAA ACAGACCAAA 16297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGTAATAG AGGTCTTCCA GACAGTGGCA TTCTCGTCAG TGGGTGCCAA ACAGACCAAA 480 CATCTGCGGA TGCAACCCCT GCAGGCGGAG AGTCTTATGG TGCTCTAAGC AACGCAATTC 16357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTGCGGA TGCAACCCCT GCAGGCGGAG AGTCTTATGG TGCTCTAAGC AACGCAATTC 540 AGGAAATCCT GGCCGAATCA GATGGTCCAG TCACCAATGA GGAGCTTGTT AGCAAGGCTA 16417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAATCCT GGCCGAATCA GATGGTCCAG TCACCAATGA GGAGCTTGTT AGCAAGGCTA 600 GGAAAAAGAT GCAGAAACAA GGCTTCACAC AACGCCCAGG CCTCTACTGC GATGATCATC 16477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAAAGAT GCAGAAACAA GGCTTCACAC AACGCCCAGG CCTCTACTGC GATGATCATC 660 ACGTTGATGC TCC-TTTTGT TTGTTGATTC TACTGTGCTA TGC 16519 |||||||||| ||| |||||| |||||||||| |||||||||| ||| ACGTTGATGC TCCTTTTTGT TTGTTGATTC TACTGTGCTA TGC 703 hqPGS_C09HBa0109D11.1+_SGN-E341713+ (15818 16519) ******************************************************************************** EST sequence 35 +strand 520 n (File: SGN-E329560+) 1 TCGCCGTGAG GAAGAAGAGG AGAATTTTGC TGAGAGTAGT GTGATTGAGA CGGAAGACGG 61 TGATCAAGTT CATGTGAAGA GCAAGTCCTT GCCTCTTTCC ACTCTCATCG AGATACTTAA 121 GCAGAAAACT GGTAAGGATG ATATTGATGT TGGGAAACTT AGGCCAACAC TCTTTGACGT 181 CTTTGGCGAA GATGCAAGTC CTAAGGTGAA GAAATTCATG AAAATCATTT TTAACAAGCT 241 ACAAAAGAAT AACGAGCAGG GTGGAGGCGG CGGGTTCATG GGTATGGTTG GTAACTTGGC 301 TCAAGAGTTT CTGAAACAGA AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT 361 GGAAACACAC GTTGAAGGTA AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC 421 AGACAGTGGC ATTCTCGTCA GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC 481 TGCAGGCGGA GAGTCTTATG GTGCTCTAAG CAACGCAATT Predicted gene structure (within gDNA segment 15237 to 16966): Exon 1 15837 16356 ( 520 n); cDNA 1 520 ( 520 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E329560+ 1.000 520 1.000 C PGS_C09HBa0109D11.1+_SGN-E329560+ (15837 16356) Alignment (genomic DNA sequence = upper lines): TCGCCGTGAG GAAGAAGAGG AGAATTTTGC TGAGAGTAGT GTGATTGAGA CGGAAGACGG 15896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGTGAG GAAGAAGAGG AGAATTTTGC TGAGAGTAGT GTGATTGAGA CGGAAGACGG 60 TGATCAAGTT CATGTGAAGA GCAAGTCCTT GCCTCTTTCC ACTCTCATCG AGATACTTAA 15956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCAAGTT CATGTGAAGA GCAAGTCCTT GCCTCTTTCC ACTCTCATCG AGATACTTAA 120 GCAGAAAACT GGTAAGGATG ATATTGATGT TGGGAAACTT AGGCCAACAC TCTTTGACGT 16016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAACT GGTAAGGATG ATATTGATGT TGGGAAACTT AGGCCAACAC TCTTTGACGT 180 CTTTGGCGAA GATGCAAGTC CTAAGGTGAA GAAATTCATG AAAATCATTT TTAACAAGCT 16076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGCGAA GATGCAAGTC CTAAGGTGAA GAAATTCATG AAAATCATTT TTAACAAGCT 240 ACAAAAGAAT AACGAGCAGG GTGGAGGCGG CGGGTTCATG GGTATGGTTG GTAACTTGGC 16136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAGAAT AACGAGCAGG GTGGAGGCGG CGGGTTCATG GGTATGGTTG GTAACTTGGC 300 TCAAGAGTTT CTGAAACAGA AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT 16196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAGTTT CTGAAACAGA AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT 360 GGAAACACAC GTTGAAGGTA AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC 16256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAACACAC GTTGAAGGTA AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC 420 AGACAGTGGC ATTCTCGTCA GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC 16316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAGTGGC ATTCTCGTCA GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC 480 TGCAGGCGGA GAGTCTTATG GTGCTCTAAG CAACGCAATT 16356 |||||||||| |||||||||| |||||||||| |||||||||| TGCAGGCGGA GAGTCTTATG GTGCTCTAAG CAACGCAATT 520 hqPGS_C09HBa0109D11.1+_SGN-E329560+ (15837 16356) ******************************************************************************** EST sequence 38 +strand 442 n (File: SGN-E236344+) 1 CTCAAGAGTT TCTGAAACAG AAACTTGATG AAAATGATGA GAGCTATGCA AAACCGGCCA 61 TGGAAACACA CGTTGAAGGT AAACAGGAGG TTTATGCCGG TTCAGGTAAT AGAGGTCTTC 121 CAGACAGTGG CATTCTCGTC AGTGGGTGCC AAACAGACCA AACATCTGCG GATGCAACCC 181 CTGCAGGCGG AGAGTCTTAT GGTGCTCTAA GCAACGCAAT TCAGGAAATC CTGGCCGAAT 241 CAGATGGTCC AGTCACCAAT GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC 301 AAGGCTTCAC ACAACGCCCA GGCCTCTACT GCGATGATCA TCACGTTGAT GCTCCTTTTG 361 TTTGTTGATT CTACTGTGCT ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC 421 AACGAGGTGT TATATAGCTA CA Predicted gene structure (within gDNA segment 15536 to 17187): Exon 1 16136 16577 ( 442 n); cDNA 1 442 ( 442 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E236344+ 1.000 442 1.000 C PGS_C09HBa0109D11.1+_SGN-E236344+ (16136 16577) Alignment (genomic DNA sequence = upper lines): CTCAAGAGTT TCTGAAACAG AAACTTGATG AAAATGATGA GAGCTATGCA AAACCGGCCA 16195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGAGTT TCTGAAACAG AAACTTGATG AAAATGATGA GAGCTATGCA AAACCGGCCA 60 TGGAAACACA CGTTGAAGGT AAACAGGAGG TTTATGCCGG TTCAGGTAAT AGAGGTCTTC 16255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAACACA CGTTGAAGGT AAACAGGAGG TTTATGCCGG TTCAGGTAAT AGAGGTCTTC 120 CAGACAGTGG CATTCTCGTC AGTGGGTGCC AAACAGACCA AACATCTGCG GATGCAACCC 16315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACAGTGG CATTCTCGTC AGTGGGTGCC AAACAGACCA AACATCTGCG GATGCAACCC 180 CTGCAGGCGG AGAGTCTTAT GGTGCTCTAA GCAACGCAAT TCAGGAAATC CTGGCCGAAT 16375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAGGCGG AGAGTCTTAT GGTGCTCTAA GCAACGCAAT TCAGGAAATC CTGGCCGAAT 240 CAGATGGTCC AGTCACCAAT GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC 16435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGGTCC AGTCACCAAT GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC 300 AAGGCTTCAC ACAACGCCCA GGCCTCTACT GCGATGATCA TCACGTTGAT GCTCCTTTTG 16495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCTTCAC ACAACGCCCA GGCCTCTACT GCGATGATCA TCACGTTGAT GCTCCTTTTG 360 TTTGTTGATT CTACTGTGCT ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC 16555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGATT CTACTGTGCT ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC 420 AACGAGGTGT TATATAGCTA CA 16577 |||||||||| |||||||||| || AACGAGGTGT TATATAGCTA CA 442 hqPGS_C09HBa0109D11.1+_SGN-E236344+ (16136 16577) ******************************************************************************** EST sequence 112 -strand 543 n (File: SGN-E288843-) 1 GGTTTTCCAA ACAGTGGCAT TTTCGTCAGT GGGTGCCAAA CAGACCAAAC ATTTGGGGAT 61 GCAACCCCTG CAGGCGAAAA GTCTTATGGT GCTTTAAGCA ACGCAATTCA GGAAATCCTG 121 GCCGAATCAA ATGGTCCAGT CACCAATAAG GAGCTTGTTA GCAAGGCTAG GAAAAAAATG 181 CAGAAACAAG GTTTCACACA ACGCCCAGGC CTTTATTGGA ATGATCATCA CGTTGAGGCC 241 CCTTTTGTTT GTTGATTCAA CTGGGCAAAG CCTTCTCGAG AAACTGTTAA AAAACGCCTG 301 TGAAGTCAAC AAGGTGTTAA AAAGCCACAC CCTTTTGGGA ATTTGGGTGA TTGTTTGTGC 361 AAATGTTGGA GAAGCTCTTT TACTCTGGTG TTTCAGTAAA ACCATGCTCC ATCATGTGAA 421 TGTGTACAAT TTGGCTCTTT TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA 481 GAACCCCAGT TTTCGGTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 541 AAA Predicted gene structure (within gDNA segment 15441 to 17913): Exon 1 16249 16745 ( 497 n); cDNA 1 497 ( 497 n); score: 0.920 PPA cDNA 498 543 MATCH C09HBa0109D11.1+ SGN-E288843- 0.920 497 0.915 C PGS_C09HBa0109D11.1+_SGN-E288843- (16249 16745) Alignment (genomic DNA sequence = upper lines): GGTCTTCCAG ACAGTGGCAT TCTCGTCAGT GGGTGCCAAA CAGACCAAAC ATCTGCGGAT 16308 ||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| || || |||| GGTTTTCCAA ACAGTGGCAT TTTCGTCAGT GGGTGCCAAA CAGACCAAAC ATTTGGGGAT 60 GCAACCCCTG CAGGCGGAGA GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG 16368 |||||||||| |||||| | | |||||||||| ||| |||||| |||||||||| |||||||||| GCAACCCCTG CAGGCGAAAA GTCTTATGGT GCTTTAAGCA ACGCAATTCA GGAAATCCTG 120 GCCGAATCAG ATGGTCCAGT CACCAATGAG GAGCTTGTTA GCAAGGCTAG GAAAAAGATG 16428 ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||| ||| GCCGAATCAA ATGGTCCAGT CACCAATAAG GAGCTTGTTA GCAAGGCTAG GAAAAAAATG 180 CAGAAACAAG GCTTCACACA ACGCCCAGGC CTCTACTGCG ATGATCATCA CGTTGATGCT 16488 |||||||||| | |||||||| |||||||||| || || || |||||||||| |||||| || CAGAAACAAG GTTTCACACA ACGCCCAGGC CTTTATTGGA ATGATCATCA CGTTGAGGCC 240 CCTTTTGTTT GTTGATTCTA CTGTGCTATG CCTTCTCGAG TAGCTGTTGA AATACGACTG 16548 |||||||||| |||||||| | ||| || | | |||||||||| | ||||| | || ||| ||| CCTTTTGTTT GTTGATTCAA CTGGGCAAAG CCTTCTCGAG AAACTGTTAA AAAACGCCTG 300 TGAAGTCAAC GAGGTGTTAT ATAGCTACAT CCTTTTGTGT ATTTGTGTGA TTGTTTGTGC 16608 |||||||||| |||||||| | ||| ||| ||||||| | ||||| |||| |||||||||| TGAAGTCAAC AAGGTGTTAA AAAGCCACAC CCTTTTGGGA ATTTGGGTGA TTGTTTGTGC 360 TAATGTTGGA GTAGCTCTTT TACTCTGGTG TTTCAGTAGA ACCATGCTCC ATCATGTGAA 16668 ||||||||| | |||||||| |||||||||| |||||||| | |||||||||| |||||||||| AAATGTTGGA GAAGCTCTTT TACTCTGGTG TTTCAGTAAA ACCATGCTCC ATCATGTGAA 420 TGTGTACTAT TTGGCTCTTT TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA 16728 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTACAAT TTGGCTCTTT TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA 480 GAACCACAGT TTTCGGT 16745 ||||| |||| ||||||| GAACCCCAGT TTTCGGT 497 hqPGS_C09HBa0109D11.1+_SGN-E288843- (16249 16745) ******************************************************************************** EST sequence 125 -strand 427 n (File: SGN-E222019-) 1 GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 61 CACCAATGAG GAGCTTGTTA GCAAGGCTAG GAAAAAGATG CAGAAACAAG GCTTCACACA 121 ACGCCCAGGC CTCTACTGCG ATGATCATCA CGTTGATGCT CCTTTTGTTT GTTGATTCTA 181 CTGTGCTATG CCTTCTCGAG TAGCTGTTGA AATACGACTG TGAAGTCAAC GAGGTGTTAT 241 ATAGCTACAT CCTTTTGTGT ATTTGTGTGA TTGTTTGTGC TAATGTTGGA GTAGCTCTTT 301 TACTCTGGTG TTTCAGTAGA ACCATGCTCC ATCATGTGAA TGTGTACTAT TTGGCTCTTT 361 TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA GACCCCAAAA AAAAAAAAAA 421 AAAAAAA Predicted gene structure (within gDNA segment 15719 to 17580): Exon 1 16329 16736 ( 408 n); cDNA 1 407 ( 407 n); score: 0.995 PPA cDNA 408 427 MATCH C09HBa0109D11.1+ SGN-E222019- 0.995 408 0.956 C PGS_C09HBa0109D11.1+_SGN-E222019- (16329 16736) Alignment (genomic DNA sequence = upper lines): GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 16388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 60 CACCAATGAG GAGCTTGTTA GCAAGGCTAG GAAAAAGATG CAGAAACAAG GCTTCACACA 16448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCAATGAG GAGCTTGTTA GCAAGGCTAG GAAAAAGATG CAGAAACAAG GCTTCACACA 120 ACGCCCAGGC CTCTACTGCG ATGATCATCA CGTTGATGCT CCTTTTGTTT GTTGATTCTA 16508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCCAGGC CTCTACTGCG ATGATCATCA CGTTGATGCT CCTTTTGTTT GTTGATTCTA 180 CTGTGCTATG CCTTCTCGAG TAGCTGTTGA AATACGACTG TGAAGTCAAC GAGGTGTTAT 16568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGCTATG CCTTCTCGAG TAGCTGTTGA AATACGACTG TGAAGTCAAC GAGGTGTTAT 240 ATAGCTACAT CCTTTTGTGT ATTTGTGTGA TTGTTTGTGC TAATGTTGGA GTAGCTCTTT 16628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCTACAT CCTTTTGTGT ATTTGTGTGA TTGTTTGTGC TAATGTTGGA GTAGCTCTTT 300 TACTCTGGTG TTTCAGTAGA ACCATGCTCC ATCATGTGAA TGTGTACTAT TTGGCTCTTT 16688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCTGGTG TTTCAGTAGA ACCATGCTCC ATCATGTGAA TGTGTACTAT TTGGCTCTTT 360 TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA GAACCACA 16736 |||||||||| |||||||||| |||||||||| |||||||||| | ||| || TTTTTTTCTT TTAAATTTGG TCAGAGAATA AGGTATTAAA G-ACCCCA 407 hqPGS_C09HBa0109D11.1+_SGN-E222019- (16329 16736) ******************************************************************************** EST sequence 124 -strand 428 n (File: SGN-E221447-) 1 GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 61 CAACCAATGA GGAGCTTGTT AGCAAGGCTA GGAAAAAGAT GCAGAAACAA GGCTTCACAC 121 AACGCCCAGG CCTCTACTGC GATGATCATC ACGTTGATGC TCCTTTTGTT TGTTGATTCT 181 ACTGTGCTAT GCCTTCTCGA GTAGCTGTTG AAATACGACT GTGAAGTCAA CGAGGTGTTA 241 TATAGCTACA TCCTTTTGTG TATTTGTGTG ATTGTTTGTG CTAATGTTGG AGTAGCTCTT 301 TTACTCTGGT GTTTCAGTAG AACCATGCTC CATCATGTGA ATGTGTACTA TTTGGCTCTT 361 TTTTTTTTCT TTTAAATTTG GTCAGAGAAT AAGGTATTAA AGAACCAAAA AAAAAAAAAA 421 AAAAAAAA Predicted gene structure (within gDNA segment 15719 to 17544): Exon 1 16329 16734 ( 406 n); cDNA 1 407 ( 407 n); score: 0.994 PPA cDNA 408 428 MATCH C09HBa0109D11.1+ SGN-E221447- 0.994 406 0.949 C PGS_C09HBa0109D11.1+_SGN-E221447- (16329 16734) Alignment (genomic DNA sequence = upper lines): GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 16388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTATGGT GCTCTAAGCA ACGCAATTCA GGAAATCCTG GCCGAATCAG ATGGTCCAGT 60 C-ACCAATGA GGAGCTTGTT AGCAAGGCTA GGAAAAAGAT GCAGAAACAA GGCTTCACAC 16447 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAATGA GGAGCTTGTT AGCAAGGCTA GGAAAAAGAT GCAGAAACAA GGCTTCACAC 120 AACGCCCAGG CCTCTACTGC GATGATCATC ACGTTGATGC TCCTTTTGTT TGTTGATTCT 16507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGCCCAGG CCTCTACTGC GATGATCATC ACGTTGATGC TCCTTTTGTT TGTTGATTCT 180 ACTGTGCTAT GCCTTCTCGA GTAGCTGTTG AAATACGACT GTGAAGTCAA CGAGGTGTTA 16567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGCTAT GCCTTCTCGA GTAGCTGTTG AAATACGACT GTGAAGTCAA CGAGGTGTTA 240 TATAGCTACA TCCTTTTGTG TATTTGTGTG ATTGTTTGTG CTAATGTTGG AGTAGCTCTT 16627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAGCTACA TCCTTTTGTG TATTTGTGTG ATTGTTTGTG CTAATGTTGG AGTAGCTCTT 300 TTACTCTGGT GTTTCAGTAG AACCATGCTC CATCATGTGA ATGTGTACTA TTTGGCTCTT 16687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTCTGGT GTTTCAGTAG AACCATGCTC CATCATGTGA ATGTGTACTA TTTGGCTCTT 360 TTTTTTTTCT TTTAAATTTG GTCAGAGAAT AAGGTATTAA AGAACCA 16734 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTTTTTTCT TTTAAATTTG GTCAGAGAAT AAGGTATTAA AGAACCA 407 hqPGS_C09HBa0109D11.1+_SGN-E221447- (16329 16734) ******************************************************************************** EST sequence 85 +strand 420 n (File: SGN-E338618+) 1 GTTATGTCAG GCACCAATAC TCGCAGTGCT GAACTTGAAG CCCAACTACG GAAGAACGCT 61 CGTCCAGAAT ACCTAATGAT GGGTAAAGAT AATAAAGAGA GGTTGGCTGA GTACCTTGGC 121 GAACTGCAGA GAAAGGAGAA CACATGTGAC AGATATGTTG CAGCTCTGAA GGGCGAAACG 181 TTGACAAGGA AACCTTACCA AAGAATTGAA CCAGTCCCAA ATCCAAGTGA TATTGAAGCA 241 AAGAAGGAAC AGAAGTAGAT CGTGGCTTAA CCGGATGCGT AGATTTAGTT TGGTACTTCT 301 ACTTTTTCCA ATGGATAAAG CTTTGGAATG GAATCATGGA CACAACTGGA GTTATTGCTA 361 TATATCTTTG AAACTTGTAC AAGTAAAATT TGAAGAACGA CTGTTGTCGA ATGAGTGAAA Predicted gene structure (within gDNA segment 20778 to 16455): Exon 1 20079 20005 ( 75 n); cDNA 1 75 ( 75 n); score: 0.960 Intron 1 20004 17410 (2595 n); Pd: 0.987 (s: 0.96), Pa: 1.000 (s: 0.98) Exon 2 17409 17065 ( 345 n); cDNA 76 420 ( 345 n); score: 0.974 MATCH C09HBa0109D11.1- SGN-E338618+ 0.971 420 1.000 C PGS_C09HBa0109D11.1-_SGN-E338618+ (20079 20005,17409 17065) Alignment (genomic DNA sequence = upper lines): GTTATGTCAG CCACCAATAC TCGCAGTCCT GAACTTGAAG CCCAACTACG GAAGAACGCT 20020 |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GTTATGTCAG GCACCAATAC TCGCAGTGCT GAACTTGAAG CCCAACTACG GAAGAACGCT 60 CGTCCAGAAT CCCTAGTATG TTCACTTCCC CTTCGAATAC TCATATTGCT AAAACTAGAT 19960 |||||||||| |||| CGTCCAGAAT ACCTA..... .......... .......... .......... .......... 75 CAGTTTGTGA TTTATGTATG TTGTATCTTC TGCTGTTTTA GCTGTACGGG GAATTGCTTA 19900 .......... .......... .......... .......... .......... .......... 75 GGATTATCAA TCGCCTAATA GTAATGTAAA TTGCCAAATA AGTATTTGAT TCGTATGTAT 19840 .......... .......... .......... .......... .......... .......... 75 TGTAGCTTCT GCAGCGTGAA ATTGCTTTGA TATTAACATA GAGCCCCTTC ACCTAGTAGT 19780 .......... .......... .......... .......... .......... .......... 75 ATTTTTATTC TTAGATGATT ATCTGATTCA TTTGTCTTGT AGCTTCTGTA GTTATGGTTA 19720 .......... .......... .......... .......... .......... .......... 75 TACGCAATTT TACGTGGTGT TGTCGGTTCT TATTTTGTAT TCTTTAAAAA AATTCTGATA 19660 .......... .......... .......... .......... .......... .......... 75 TGGAATCATA GTCTATATAA TTACAATTAT GAGTTAAGAG TATCCATTAA ATGTAGTCTA 19600 .......... .......... .......... .......... .......... .......... 75 AAAGATATAG ACCATCAGTC AGTTGGTTCA TTCTAATTCA TTGAATTAAT CCGTTATAAA 19540 .......... .......... .......... .......... .......... .......... 75 AATATCAGAA AAAGAAGGGA ACATTGTTTT TGGTTAACAT GAATTGAATT TTTCTGTAAA 19480 .......... .......... .......... .......... .......... .......... 75 CAATTTTTCA TAAAAATTGT GTCTTTATCC CGGAGTCTTG AAGAAAATAA AAATCTTTCT 19420 .......... .......... .......... .......... .......... .......... 75 TTTCTTGACT CCCCTTGGCC GCTGCTTAGC TAAGCGTTAT TACAGGAACA TCTTCAATCT 19360 .......... .......... .......... .......... .......... .......... 75 GGTAGGATGA GTGATCTGTT TCACATGTCT TGTACATCCT GATCTAATGG TTATACCAAG 19300 .......... .......... .......... .......... .......... .......... 75 AACCGCCTTG TCATTATTAT TTCCTAATGT GCTTTAGAGT CCCCTCACCT AGGAGTATTG 19240 .......... .......... .......... .......... .......... .......... 75 TTTTTACCAG ATGAGTATTG ATTCATGTGT TGTAGTTTCT GCCGTTATGA TTGTATGCAA 19180 .......... .......... .......... .......... .......... .......... 75 ATTGATTCTT TTTGTTTATT GTACTCCCTT TGGCCTTTGC CTACTTAACT GTTACTACCA 19120 .......... .......... .......... .......... .......... .......... 75 GAGGATCTTT CATAACAATT AGCAAGGCAA AGGCCTTTGA AAGATGCTCT GTTACTAGTA 19060 .......... .......... .......... .......... .......... .......... 75 ATGGTATATG AGGAGCAAAC TTTCATCTGG CGAGGTCAGT ATGCGCCTCA TGTCTATTGT 19000 .......... .......... .......... .......... .......... .......... 75 GTATTCTGCT GTGACGATTG AGCTTTTTGA TCTGTCAAAA TGAAAAGTAA ACTAGCAGTA 18940 .......... .......... .......... .......... .......... .......... 75 TCATTTGATA ATGTTTCTTG TTGTTTGATG TACTGGTTAC CTTTGAAAAT AAAATGATGT 18880 .......... .......... .......... .......... .......... .......... 75 TTGGAGCTTT ATTTTTTAGT GTAGATAAAG TGATTGATAG TTAACTTATA GAAAATAGCA 18820 .......... .......... .......... .......... .......... .......... 75 ATCGATAACC AATCTTGGTA GATACAAAAC AAGAGTGTAA AGTAATTGAA TTACTTCTAA 18760 .......... .......... .......... .......... .......... .......... 75 GCATTTGGTT GGACACCTCC TCTATATTTA TTGATGGGTT CCTATGTATG TTTTATGAGA 18700 .......... .......... .......... .......... .......... .......... 75 CATCATATGA CAGATCCGGG AGTTTAAGAA ATTAGATTAA CAGTGGTATT TTTTAAGTAT 18640 .......... .......... .......... .......... .......... .......... 75 TAGTCAAAAA AATTATTTAA ATGTAGAAAT CCTGGGATTC TACAATAATT TGTTCAGAGA 18580 .......... .......... .......... .......... .......... .......... 75 GACAAAGAAG TGAAAGCCTA GATGGTATGT TGAGGAACTG GGGAATACAT TATAAGTGGA 18520 .......... .......... .......... .......... .......... .......... 75 GCGGAAGTGG ACCGAGTTGA AAAAACTTTC ATTGAGAAAA CGTATGGCTT GCTATCTAAG 18460 .......... .......... .......... .......... .......... .......... 75 CAGTGTAGGA AACGAAGTCT CTGGAATTTG ATAGATTCAC CAAGGGCTTT TTGTTGATAA 18400 .......... .......... .......... .......... .......... .......... 75 TGTTGACCTA TTATTTATTT TTAACGAAGT AATATCATTA ACAGGCATCA CGAAGATGCA 18340 .......... .......... .......... .......... .......... .......... 75 AATAGAACAT AGTAGTAAAG AGGGTGATAT GCTAGCTCCA TTAAAGGCAT CAAGAAGATG 18280 .......... .......... .......... .......... .......... .......... 75 TTGACCAATC ATTAAGGAAG AATCAAAGAC CAGCTTCAAG TATTTCCTTT AGGGGGAGAA 18220 .......... .......... .......... .......... .......... .......... 75 ACTAGATAGA AGCCTAAATG TGATTTTTAT TGCTATAATC CTGATTCCTG AAGAGGTAAG 18160 .......... .......... .......... .......... .......... .......... 75 ATGTTGGTTA GACTCTTTTG ACCTCTATTC TATTTGGCAA TAGTTACAAG ATTATTGCCA 18100 .......... .......... .......... .......... .......... .......... 75 AAATCCTCAA TGGAAGGTTG AGGAAAATAA TAGACAAATT GGTATCTAAA TCACATAATC 18040 .......... .......... .......... .......... .......... .......... 75 TTTTTCTTTG TGAGAGTGCT AGTAGCTAAT ATGAGCTTGG AGTCCAAGAT GAAGTATATT 17980 .......... .......... .......... .......... .......... .......... 75 GATGTTAGGG CAATGTGCAA ATTAGACTTC AAGGAATATG ACCGTGTTAG CTGGCCTTTC 17920 .......... .......... .......... .......... .......... .......... 75 TTACTAAAGC TACTTGAGAG CAGGGGTTAA ATAGATTGAC TTGTGCATAT TAAGCTGTAA 17860 .......... .......... .......... .......... .......... .......... 75 ACGACCAGAA TGTTAGTATC TTTTAACGTA CAGATTCTAC CAGCAATTCG GGCTTTAAGG 17800 .......... .......... .......... .......... .......... .......... 75 TGGAAAAATC TCTCACCGTT TACCCTGGTT TGCCTTTGGG TGCCTTGGAC CAGCTTGTAT 17740 .......... .......... .......... .......... .......... .......... 75 TTTTGGAACT TGTAAATTGG AAAGGAAGGA CAACTAAGTT CTTTAAGTCC CCAAAGAACC 17680 .......... .......... .......... .......... .......... .......... 75 TCCATTGAGT GACGTAAAGT GTTATTGTAA TAAAGATTAA TTTTAAACCC TTTTCTACAA 17620 .......... .......... .......... .......... .......... .......... 75 ATAGCTATAA TGTTCACTTC TCTATATTGT TCAGTCTTTT GCTGTTAGAA AGAACATCGA 17560 .......... .......... .......... .......... .......... .......... 75 CTTTGCCTTT TTTATGAAGA GCAAAGTAGG TAAAGCTTTG CAGTAGATAA AAAAAAATGG 17500 .......... .......... .......... .......... .......... .......... 75 ACTCACAGAC ACAGTGGTTT CTTCTGTCTT AGTACTTTGA CTTACAATTG TTGAATTCCT 17440 .......... .......... .......... .......... .......... .......... 75 AAACATATAT TGTTTTGATT TTTGTAACAG ATGATGGGTA AAGTTAATAA AGAGAGGTTG 17380 |||||||||| ||| |||||| |||||||||| .......... .......... .......... ATGATGGGTA AAGATAATAA AGAGAGGTTG 105 GCTGAGTACC TTGGCGAACT GCAGAGAAAG GAGAACACAA ATGACAGATA TGTTGCAGCT 17320 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| GCTGAGTACC TTGGCGAACT GCAGAGAAAG GAGAACACAT GTGACAGATA TGTTGCAGCT 165 CTAAAGGGCG AAACGTTGAC AAGGAAACCT TACCAAAGAA TTCAACCAGT CCCAAATCCA 17260 || ||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CTGAAGGGCG AAACGTTGAC AAGGAAACCT TACCAAAGAA TTGAACCAGT CCCAAATCCA 225 AGTGATATTG AAGCAAAGAA GGAACAGAAG TAGATCGTGG CTTAACCGGT TTTGTTGATT 17200 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | || |||| AGTGATATTG AAGCAAAGAA GGAACAGAAG TAGATCGTGG CTTAACCGGA TGCGTAGATT 285 TAGTTTGGTA CTTCTACTTT TTCCAATGGA TAAAGCTTTG GAATGGAATC ATGGACACAA 17140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTGGTA CTTCTACTTT TTCCAATGGA TAAAGCTTTG GAATGGAATC ATGGACACAA 345 CTGGAGTTAT TGCTATATAT CTTTGAAACT TGTACAAGTA AAATTTGAAG AACGACTGTT 17080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAGTTAT TGCTATATAT CTTTGAAACT TGTACAAGTA AAATTTGAAG AACGACTGTT 405 GTCGAATGAG TGAAA 17065 |||||||||| ||||| GTCGAATGAG TGAAA 420 hqPGS_C09HBa0109D11.1-_SGN-E338618+ (20079 20005,17409 17065) ******************************************************************************** EST sequence 83 -strand 646 n (File: SGN-E371712-) 1 AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT GGAAACACAC GTTGAAGGTA 61 AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC AGACAGTGGC ATTCTCGTCA 121 GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC TGCAGGCGGA GAGTCTTATG 181 GTGCTCTAAG CAACACAATT CAGGAAATCC TGGCCGAATC AGATGGTCCA GTCACCATAT 241 GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC AAGGCTTCAC ACAACGCCCA 301 GGCCTCTACT GCAATGATCA TCACGTTAAT GCTCCTTTTG TTTGTTGATT CTACTGTGCT 361 ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC AACGAGGTGT TATATAGCTA 421 CATCCTTTTG TGTATTTGTG TGATTGTTTG TGCTAATGTT GGAGTAGCTC TTTTACTATG 481 GTGTTTCAGT AGAACCATGC TCCATCATGT GAATGTGTAC TATTTGGCTC TTTTTTTTTT 541 CTTTTAAATT TGGTCAAAGA ATAAGGTATT AAAGAACCAC AGTTTTCGGT ATTGTTTAGG 601 ATATTTGAAA GTTAAATCTG GAGAAATTGT TTGTATAAAA AAAAAA Predicted gene structure (within gDNA segment 15547 to 17590): Exon 1 16157 16797 ( 641 n); cDNA 1 642 ( 642 n); score: 0.982 MATCH C09HBa0109D11.1+ SGN-E371712- 0.982 641 0.992 C PGS_C09HBa0109D11.1+_SGN-E371712- (16157 16797) Alignment (genomic DNA sequence = upper lines): AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT GGAAACACAC GTTGAAGGTA 16216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGATGA AAATGATGAG AGCTATGCAA AACCGGCCAT GGAAACACAC GTTGAAGGTA 60 AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC AGACAGTGGC ATTCTCGTCA 16276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGGAGGT TTATGCCGGT TCAGGTAATA GAGGTCTTCC AGACAGTGGC ATTCTCGTCA 120 GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC TGCAGGCGGA GAGTCTTATG 16336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTGCCA AACAGACCAA ACATCTGCGG ATGCAACCCC TGCAGGCGGA GAGTCTTATG 180 GTGCTCTAAG CAACGCAATT CAGGAAATCC TGGCCGAATC AGATGGTCCA GTCACCA-AT 16395 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||| || GTGCTCTAAG CAACACAATT CAGGAAATCC TGGCCGAATC AGATGGTCCA GTCACCATAT 240 GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC AAGGCTTCAC ACAACGCCCA 16455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGCTTG TTAGCAAGGC TAGGAAAAAG ATGCAGAAAC AAGGCTTCAC ACAACGCCCA 300 GGCCTCTACT GCGATGATCA TCACGTTGAT GCTCCTTTTG TTTGTTGATT CTACTGTGCT 16515 |||||||||| || ||||||| ||||||| || |||||||||| |||||||||| |||||||||| GGCCTCTACT GCAATGATCA TCACGTTAAT GCTCCTTTTG TTTGTTGATT CTACTGTGCT 360 ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC AACGAGGTGT TATATAGCTA 16575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTTCTC GAGTAGCTGT TGAAATACGA CTGTGAAGTC AACGAGGTGT TATATAGCTA 420 CATCCTTTTG TGTATTTGTG TGATTGTTTG TGCTAATGTT GGAGTAGCTC TTTTACTCTG 16635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CATCCTTTTG TGTATTTGTG TGATTGTTTG TGCTAATGTT GGAGTAGCTC TTTTACTATG 480 GTGTTTCAGT AGAACCATGC TCCATCATGT GAATGTGTAC TATTTGGCTC TTTTTTTTTT 16695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTCAGT AGAACCATGC TCCATCATGT GAATGTGTAC TATTTGGCTC TTTTTTTTTT 540 CTTTTAAATT TGGTCAGAGA ATAAGGTATT AAAGAACCAC AGTTTTCGGT ATTGTTTAGG 16755 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTAAATT TGGTCAAAGA ATAAGGTATT AAAGAACCAC AGTTTTCGGT ATTGTTTAGG 600 ATATTTGAAA GTTAAATCTG GAGAACTTGT TTGTATACTG AA 16797 |||||||||| |||||||||| ||||| |||| ||||||| || ATATTTGAAA GTTAAATCTG GAGAAATTGT TTGTATAAAA AA 642 hqPGS_C09HBa0109D11.1+_SGN-E371712- (16157 16797) ******************************************************************************** EST sequence 121 -strand 576 n (File: SGN-E273465-) 1 TCAGTGGGTG CCAAACAGAC CAAACATCTG CGGATGCAAC CCCTGCAGGC GGAGAGTCTT 61 ATGGTGCTCT AAGCAACGCA ATTCAGGAAA TCCTGGCCGA ATCAGATGGT CCAGTCACCA 121 ATGAGGAGCT TGTTAGCAAG GCTAGGAAAA AGATGCAGAA ACAAGGCTTC ACACAACGCC 181 CAGGCCTCTA CTGCGATGAT CATCACGTTG ATGCTCCTTT TGTTTGTTGA TTCTACTGTG 241 CTATGCCTTC TCGAGTAGCT GTTGAAATAC GACTGTGAAG TCAACGAGGT GTTATATAGC 301 TACATCCTTT TGTGTATTTG TGTGATTGTT TGTGCTAATG TTGGAGTAGC TCTTTTACTC 361 TGGTGTTTCA GTAGAACCAT GCTCCATCAT GTGAATGTGT ACTATTTGGC TCTTTTTTTT 421 TTCTTTTAAA TTTGGTCAGA GAATAAGGTA TTAAAGAACC ACAGTTTTCG GTATTGTTTA 481 GGATATTTGA AAGTTAAATC TGGAGAACTT GTTTGTATAC TGAATGAGTT ATATTTTAAT 541 GCAAAAAAAA AAAAAAAAAA CTCGAGACTA GTTCTC Predicted gene structure (within gDNA segment 15664 to 17737): Exon 1 16274 16817 ( 544 n); cDNA 1 544 ( 544 n); score: 1.000 PPA cDNA 545 561 MATCH C09HBa0109D11.1+ SGN-E273465- 1.000 544 0.944 C PGS_C09HBa0109D11.1+_SGN-E273465- (16274 16817) Alignment (genomic DNA sequence = upper lines): TCAGTGGGTG CCAAACAGAC CAAACATCTG CGGATGCAAC CCCTGCAGGC GGAGAGTCTT 16333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGGGTG CCAAACAGAC CAAACATCTG CGGATGCAAC CCCTGCAGGC GGAGAGTCTT 60 ATGGTGCTCT AAGCAACGCA ATTCAGGAAA TCCTGGCCGA ATCAGATGGT CCAGTCACCA 16393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGCTCT AAGCAACGCA ATTCAGGAAA TCCTGGCCGA ATCAGATGGT CCAGTCACCA 120 ATGAGGAGCT TGTTAGCAAG GCTAGGAAAA AGATGCAGAA ACAAGGCTTC ACACAACGCC 16453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGGAGCT TGTTAGCAAG GCTAGGAAAA AGATGCAGAA ACAAGGCTTC ACACAACGCC 180 CAGGCCTCTA CTGCGATGAT CATCACGTTG ATGCTCCTTT TGTTTGTTGA TTCTACTGTG 16513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCCTCTA CTGCGATGAT CATCACGTTG ATGCTCCTTT TGTTTGTTGA TTCTACTGTG 240 CTATGCCTTC TCGAGTAGCT GTTGAAATAC GACTGTGAAG TCAACGAGGT GTTATATAGC 16573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGCCTTC TCGAGTAGCT GTTGAAATAC GACTGTGAAG TCAACGAGGT GTTATATAGC 300 TACATCCTTT TGTGTATTTG TGTGATTGTT TGTGCTAATG TTGGAGTAGC TCTTTTACTC 16633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATCCTTT TGTGTATTTG TGTGATTGTT TGTGCTAATG TTGGAGTAGC TCTTTTACTC 360 TGGTGTTTCA GTAGAACCAT GCTCCATCAT GTGAATGTGT ACTATTTGGC TCTTTTTTTT 16693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTCA GTAGAACCAT GCTCCATCAT GTGAATGTGT ACTATTTGGC TCTTTTTTTT 420 TTCTTTTAAA TTTGGTCAGA GAATAAGGTA TTAAAGAACC ACAGTTTTCG GTATTGTTTA 16753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTAAA TTTGGTCAGA GAATAAGGTA TTAAAGAACC ACAGTTTTCG GTATTGTTTA 480 GGATATTTGA AAGTTAAATC TGGAGAACTT GTTTGTATAC TGAATGAGTT ATATTTTAAT 16813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATATTTGA AAGTTAAATC TGGAGAACTT GTTTGTATAC TGAATGAGTT ATATTTTAAT 540 GCAA 16817 |||| GCAA 544 hqPGS_C09HBa0109D11.1+_SGN-E273465- (16274 16817) ******************************************************************************** EST sequence 73 +strand 424 n (File: SGN-E222748+) 1 TTTTTTTTTT TTTTTTTTTT ACAAACAAGT TCTCCAGATG GAGGTTTCAA ATATCCTAAA 61 CAATACCGAA AACTGTGGTT CTTTAATACC TTATTCTCTG ACCAAATTTA AAAGAAAAAA 121 AAAAGAGCCA AATAGTACAC ATTCACATGA TGGAGCATGG TTCTACTGAA ACACCAGAGT 181 AAAAGAGCTA CTCCAACATT AGCACAAACA ATCACACAAA TACACAAAAG GATGTAGCTA 241 TATAACACCT CGTTGACTTC ACAGTCGTAT TTCAACAGCT ACTCGAGAAG GCATAGCACA 301 GTAGAATCAA CAAACAAAAG GAGCATCAAC GTGATGATCA TCGCAGTAGA GGCCTGGGCG 361 TTGTGTGAAG CCTTGTTTCT GCATCTTTTT CCTAGCCTTG CTAACAAGCT CCTCATTGGT 421 GACT Predicted gene structure (within gDNA segment 17580 to 15776): Exon 1 16843 16835 ( 9 n); cDNA 1 9 ( 9 n); score: 0.667 Intron 1 16834 16801 ( 34 n); Pd: 0.646 (s: 0), Pa: 0.000 (s: 0.80) Exon 2 16800 16386 ( 415 n); cDNA 10 424 ( 415 n); score: 0.976 MATCH C09HBa0109D11.1- SGN-E222748+ 0.976 424 1.000 C PGS_C09HBa0109D11.1-_SGN-E222748+ (16843 16835,16800 16386) Alignment (genomic DNA sequence = upper lines): TTTATGTTGG CACATGATAC ATTCAGTTGC ATTAAAATAT AACTCATTCA GTATACAAAC 16784 ||| | || | || | ||||||| TTTTTTTTT. .......... .......... .......... ...TTTTTTT TTTTACAAAC 26 AAGTTCTCCA GATTTAACTT TCAAATATCC TAAACAATAC CGAAAACTGT GGTTCTTTAA 16724 |||||||||| ||| | || |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCTCCA GATGGAGGTT TCAAATATCC TAAACAATAC CGAAAACTGT GGTTCTTTAA 86 TACCTTATTC TCTGACCAAA TTTAAAAGAA AAAAAAAAGA GCCAAATAGT ACACATTCAC 16664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTTATTC TCTGACCAAA TTTAAAAGAA AAAAAAAAGA GCCAAATAGT ACACATTCAC 146 ATGATGGAGC ATGGTTCTAC TGAAACACCA GAGTAAAAGA GCTACTCCAA CATTAGCACA 16604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGGAGC ATGGTTCTAC TGAAACACCA GAGTAAAAGA GCTACTCCAA CATTAGCACA 206 AACAATCACA CAAATACACA AAAGGATGTA GCTATATAAC ACCTCGTTGA CTTCACAGTC 16544 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATCACA CAAATACACA AAAGGATGTA GCTATATAAC ACCTCGTTGA CTTCACAGTC 266 GTATTTCAAC AGCTACTCGA GAAGGCATAG CACAGTAGAA TCAACAAACA AAAGGAGCAT 16484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCAAC AGCTACTCGA GAAGGCATAG CACAGTAGAA TCAACAAACA AAAGGAGCAT 326 CAACGTGATG ATCATCGCAG TAGAGGCCTG GGCGTTGTGT GAAGCCTTGT TTCTGCATCT 16424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGTGATG ATCATCGCAG TAGAGGCCTG GGCGTTGTGT GAAGCCTTGT TTCTGCATCT 386 TTTTCCTAGC CTTGCTAACA AGCTCCTCAT TGGTGACT 16386 |||||||||| |||||||||| |||||||||| |||||||| TTTTCCTAGC CTTGCTAACA AGCTCCTCAT TGGTGACT 424 hqPGS_C09HBa0109D11.1-_SGN-E222748+ (16800 16386) ******************************************************************************** EST sequence 131 +strand 423 n (File: SGN-E223125+) 1 TTTTTTTTTT TTTTCTTTTA CAAACAAGNT CTCCAGATTT AACTTTGAAA TATCCTAAAC 61 AATACCGAAA ACTGTGGTTC TTTAATACCT TATTCTCTGA CCAAATTTAA AAGAAAAAAA 121 AAAGAGCCAA ATAGTACACA TTCACATGAT GGAGCATGGT TCTACTGAAA CACCAGAGTA 181 AAAGAGCTAC TCCAACATTA GCACAAACAA TCACACAAAT ACACAAAAGG ATGTAGCTAT 241 ATAACACCTC GTTGACTTCA CAGTCGTATT TCAACAGCTA CTCGAGAAGG CATAGCACAG 301 TTGAATCAAC AAACAAAAGG TGCATTAACG TGATGATCAT CGCAGTAGAG GCCTGGGCGT 361 TGTGTGAAGC CTTGTTTCTG CATCTTTTTC CTAGCCTTGC TAACAAGCTC CTCATTGGTG 421 ACT Predicted gene structure (within gDNA segment 17669 to 15776): Exon 1 16797 16386 ( 412 n); cDNA 12 423 ( 412 n); score: 0.978 PPA cDNA 11 1 MATCH C09HBa0109D11.1- SGN-E223125+ 0.978 412 0.974 C PGS_C09HBa0109D11.1-_SGN-E223125+ (16797 16386) Alignment (genomic DNA sequence = upper lines): TTCAGTATAC AAACAAGTTC TCCAGATTTA ACTTTCAAAT ATCCTAAACA ATACCGAAAA 16738 || | ||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| TTTCTTTTAC AAACAAGNTC TCCAGATTTA ACTTTGAAAT ATCCTAAACA ATACCGAAAA 71 CTGTGGTTCT TTAATACCTT ATTCTCTGAC CAAATTTAAA AGAAAAAAAA AAGAGCCAAA 16678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGGTTCT TTAATACCTT ATTCTCTGAC CAAATTTAAA AGAAAAAAAA AAGAGCCAAA 131 TAGTACACAT TCACATGATG GAGCATGGTT CTACTGAAAC ACCAGAGTAA AAGAGCTACT 16618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTACACAT TCACATGATG GAGCATGGTT CTACTGAAAC ACCAGAGTAA AAGAGCTACT 191 CCAACATTAG CACAAACAAT CACACAAATA CACAAAAGGA TGTAGCTATA TAACACCTCG 16558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACATTAG CACAAACAAT CACACAAATA CACAAAAGGA TGTAGCTATA TAACACCTCG 251 TTGACTTCAC AGTCGTATTT CAACAGCTAC TCGAGAAGGC ATAGCACAGT AGAATCAACA 16498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTGACTTCAC AGTCGTATTT CAACAGCTAC TCGAGAAGGC ATAGCACAGT TGAATCAACA 311 AACAAAAGGA GCATCAACGT GATGATCATC GCAGTAGAGG CCTGGGCGTT GTGTGAAGCC 16438 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAAAGGT GCATTAACGT GATGATCATC GCAGTAGAGG CCTGGGCGTT GTGTGAAGCC 371 TTGTTTCTGC ATCTTTTTCC TAGCCTTGCT AACAAGCTCC TCATTGGTGA CT 16386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TTGTTTCTGC ATCTTTTTCC TAGCCTTGCT AACAAGCTCC TCATTGGTGA CT 423 hqPGS_C09HBa0109D11.1-_SGN-E223125+ (16797 16386) ******************************************************************************** EST sequence 74 +strand 440 n (File: SGN-E337588+) 1 AACTAAGGAA TCGAAGCCGT TCTTCATCGG ATTCGCCACC GTTTGCGGCG TCATTCCGGG 61 GATTATTGGT TTCTGCGTTA TGTCAGCCAC CAATACTCGC AGTCCTGAAC TTGAAGCCCA 121 ACTACGGAAG AACGCTCGTC CAGAATCCCT AATGATGGGT AAAGTTAATA AAGAGAGGTT 181 GGCTGAGTAC CTTGGCGAAC TGCAGAGAAA GGAGAACACA AATGACAGAT ATGTTGCAGC 241 TCTAAAGGGC GAAACGTTGA CAAGGAAACC TTACCAAAGA ATTCAACCAG TCCCAAATCC 301 AAGTGATATT GAAGCAAAGA AGGAACAGAA GTAGATCGTG GCTTAACCGG TTTTGTTGAT 361 TTAGTTTGGT ACTTCTACTT TTTCCAATGG ATAAAGCTTT GGAATGGAAT CATGGACACA 421 ACTGGAGTTA TTGCTATATA Predicted gene structure (within gDNA segment 20791 to 16511): Exon 1 20155 20005 ( 151 n); cDNA 1 151 ( 151 n); score: 0.993 Intron 1 20004 17410 (2595 n); Pd: 0.987 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17409 17121 ( 289 n); cDNA 152 440 ( 289 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E337588+ 0.998 440 1.000 C PGS_C09HBa0109D11.1-_SGN-E337588+ (20155 20005,17409 17121) Alignment (genomic DNA sequence = upper lines): AACGAAGGAA TCGAAGCCGT TCTTCATCGG ATTCGCCACC GTTTGCGGCG TCATTCCGGG 20096 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAGGAA TCGAAGCCGT TCTTCATCGG ATTCGCCACC GTTTGCGGCG TCATTCCGGG 60 GATTATTGGT TTCTGCGTTA TGTCAGCCAC CAATACTCGC AGTCCTGAAC TTGAAGCCCA 20036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTATTGGT TTCTGCGTTA TGTCAGCCAC CAATACTCGC AGTCCTGAAC TTGAAGCCCA 120 ACTACGGAAG AACGCTCGTC CAGAATCCCT AGTATGTTCA CTTCCCCTTC GAATACTCAT 19976 |||||||||| |||||||||| |||||||||| | ACTACGGAAG AACGCTCGTC CAGAATCCCT A......... .......... .......... 151 ATTGCTAAAA CTAGATCAGT TTGTGATTTA TGTATGTTGT ATCTTCTGCT GTTTTAGCTG 19916 .......... .......... .......... .......... .......... .......... 151 TACGGGGAAT TGCTTAGGAT TATCAATCGC CTAATAGTAA TGTAAATTGC CAAATAAGTA 19856 .......... .......... .......... .......... .......... .......... 151 TTTGATTCGT ATGTATTGTA GCTTCTGCAG CGTGAAATTG CTTTGATATT AACATAGAGC 19796 .......... .......... .......... .......... .......... .......... 151 CCCTTCACCT AGTAGTATTT TTATTCTTAG ATGATTATCT GATTCATTTG TCTTGTAGCT 19736 .......... .......... .......... .......... .......... .......... 151 TCTGTAGTTA TGGTTATACG CAATTTTACG TGGTGTTGTC GGTTCTTATT TTGTATTCTT 19676 .......... .......... .......... .......... .......... .......... 151 TAAAAAAATT CTGATATGGA ATCATAGTCT ATATAATTAC AATTATGAGT TAAGAGTATC 19616 .......... .......... .......... .......... .......... .......... 151 CATTAAATGT AGTCTAAAAG ATATAGACCA TCAGTCAGTT GGTTCATTCT AATTCATTGA 19556 .......... .......... .......... .......... .......... .......... 151 ATTAATCCGT TATAAAAATA TCAGAAAAAG AAGGGAACAT TGTTTTTGGT TAACATGAAT 19496 .......... .......... .......... .......... .......... .......... 151 TGAATTTTTC TGTAAACAAT TTTTCATAAA AATTGTGTCT TTATCCCGGA GTCTTGAAGA 19436 .......... .......... .......... .......... .......... .......... 151 AAATAAAAAT CTTTCTTTTC TTGACTCCCC TTGGCCGCTG CTTAGCTAAG CGTTATTACA 19376 .......... .......... .......... .......... .......... .......... 151 GGAACATCTT CAATCTGGTA GGATGAGTGA TCTGTTTCAC ATGTCTTGTA CATCCTGATC 19316 .......... .......... .......... .......... .......... .......... 151 TAATGGTTAT ACCAAGAACC GCCTTGTCAT TATTATTTCC TAATGTGCTT TAGAGTCCCC 19256 .......... .......... .......... .......... .......... .......... 151 TCACCTAGGA GTATTGTTTT TACCAGATGA GTATTGATTC ATGTGTTGTA GTTTCTGCCG 19196 .......... .......... .......... .......... .......... .......... 151 TTATGATTGT ATGCAAATTG ATTCTTTTTG TTTATTGTAC TCCCTTTGGC CTTTGCCTAC 19136 .......... .......... .......... .......... .......... .......... 151 TTAACTGTTA CTACCAGAGG ATCTTTCATA ACAATTAGCA AGGCAAAGGC CTTTGAAAGA 19076 .......... .......... .......... .......... .......... .......... 151 TGCTCTGTTA CTAGTAATGG TATATGAGGA GCAAACTTTC ATCTGGCGAG GTCAGTATGC 19016 .......... .......... .......... .......... .......... .......... 151 GCCTCATGTC TATTGTGTAT TCTGCTGTGA CGATTGAGCT TTTTGATCTG TCAAAATGAA 18956 .......... .......... .......... .......... .......... .......... 151 AAGTAAACTA GCAGTATCAT TTGATAATGT TTCTTGTTGT TTGATGTACT GGTTACCTTT 18896 .......... .......... .......... .......... .......... .......... 151 GAAAATAAAA TGATGTTTGG AGCTTTATTT TTTAGTGTAG ATAAAGTGAT TGATAGTTAA 18836 .......... .......... .......... .......... .......... .......... 151 CTTATAGAAA ATAGCAATCG ATAACCAATC TTGGTAGATA CAAAACAAGA GTGTAAAGTA 18776 .......... .......... .......... .......... .......... .......... 151 ATTGAATTAC TTCTAAGCAT TTGGTTGGAC ACCTCCTCTA TATTTATTGA TGGGTTCCTA 18716 .......... .......... .......... .......... .......... .......... 151 TGTATGTTTT ATGAGACATC ATATGACAGA TCCGGGAGTT TAAGAAATTA GATTAACAGT 18656 .......... .......... .......... .......... .......... .......... 151 GGTATTTTTT AAGTATTAGT CAAAAAAATT ATTTAAATGT AGAAATCCTG GGATTCTACA 18596 .......... .......... .......... .......... .......... .......... 151 ATAATTTGTT CAGAGAGACA AAGAAGTGAA AGCCTAGATG GTATGTTGAG GAACTGGGGA 18536 .......... .......... .......... .......... .......... .......... 151 ATACATTATA AGTGGAGCGG AAGTGGACCG AGTTGAAAAA ACTTTCATTG AGAAAACGTA 18476 .......... .......... .......... .......... .......... .......... 151 TGGCTTGCTA TCTAAGCAGT GTAGGAAACG AAGTCTCTGG AATTTGATAG ATTCACCAAG 18416 .......... .......... .......... .......... .......... .......... 151 GGCTTTTTGT TGATAATGTT GACCTATTAT TTATTTTTAA CGAAGTAATA TCATTAACAG 18356 .......... .......... .......... .......... .......... .......... 151 GCATCACGAA GATGCAAATA GAACATAGTA GTAAAGAGGG TGATATGCTA GCTCCATTAA 18296 .......... .......... .......... .......... .......... .......... 151 AGGCATCAAG AAGATGTTGA CCAATCATTA AGGAAGAATC AAAGACCAGC TTCAAGTATT 18236 .......... .......... .......... .......... .......... .......... 151 TCCTTTAGGG GGAGAAACTA GATAGAAGCC TAAATGTGAT TTTTATTGCT ATAATCCTGA 18176 .......... .......... .......... .......... .......... .......... 151 TTCCTGAAGA GGTAAGATGT TGGTTAGACT CTTTTGACCT CTATTCTATT TGGCAATAGT 18116 .......... .......... .......... .......... .......... .......... 151 TACAAGATTA TTGCCAAAAT CCTCAATGGA AGGTTGAGGA AAATAATAGA CAAATTGGTA 18056 .......... .......... .......... .......... .......... .......... 151 TCTAAATCAC ATAATCTTTT TCTTTGTGAG AGTGCTAGTA GCTAATATGA GCTTGGAGTC 17996 .......... .......... .......... .......... .......... .......... 151 CAAGATGAAG TATATTGATG TTAGGGCAAT GTGCAAATTA GACTTCAAGG AATATGACCG 17936 .......... .......... .......... .......... .......... .......... 151 TGTTAGCTGG CCTTTCTTAC TAAAGCTACT TGAGAGCAGG GGTTAAATAG ATTGACTTGT 17876 .......... .......... .......... .......... .......... .......... 151 GCATATTAAG CTGTAAACGA CCAGAATGTT AGTATCTTTT AACGTACAGA TTCTACCAGC 17816 .......... .......... .......... .......... .......... .......... 151 AATTCGGGCT TTAAGGTGGA AAAATCTCTC ACCGTTTACC CTGGTTTGCC TTTGGGTGCC 17756 .......... .......... .......... .......... .......... .......... 151 TTGGACCAGC TTGTATTTTT GGAACTTGTA AATTGGAAAG GAAGGACAAC TAAGTTCTTT 17696 .......... .......... .......... .......... .......... .......... 151 AAGTCCCCAA AGAACCTCCA TTGAGTGACG TAAAGTGTTA TTGTAATAAA GATTAATTTT 17636 .......... .......... .......... .......... .......... .......... 151 AAACCCTTTT CTACAAATAG CTATAATGTT CACTTCTCTA TATTGTTCAG TCTTTTGCTG 17576 .......... .......... .......... .......... .......... .......... 151 TTAGAAAGAA CATCGACTTT GCCTTTTTTA TGAAGAGCAA AGTAGGTAAA GCTTTGCAGT 17516 .......... .......... .......... .......... .......... .......... 151 AGATAAAAAA AAATGGACTC ACAGACACAG TGGTTTCTTC TGTCTTAGTA CTTTGACTTA 17456 .......... .......... .......... .......... .......... .......... 151 CAATTGTTGA ATTCCTAAAC ATATATTGTT TTGATTTTTG TAACAGATGA TGGGTAAAGT 17396 |||| |||||||||| .......... .......... .......... .......... ......ATGA TGGGTAAAGT 165 TAATAAAGAG AGGTTGGCTG AGTACCTTGG CGAACTGCAG AGAAAGGAGA ACACAAATGA 17336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAAGAG AGGTTGGCTG AGTACCTTGG CGAACTGCAG AGAAAGGAGA ACACAAATGA 225 CAGATATGTT GCAGCTCTAA AGGGCGAAAC GTTGACAAGG AAACCTTACC AAAGAATTCA 17276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATATGTT GCAGCTCTAA AGGGCGAAAC GTTGACAAGG AAACCTTACC AAAGAATTCA 285 ACCAGTCCCA AATCCAAGTG ATATTGAAGC AAAGAAGGAA CAGAAGTAGA TCGTGGCTTA 17216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGTCCCA AATCCAAGTG ATATTGAAGC AAAGAAGGAA CAGAAGTAGA TCGTGGCTTA 345 ACCGGTTTTG TTGATTTAGT TTGGTACTTC TACTTTTTCC AATGGATAAA GCTTTGGAAT 17156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGTTTTG TTGATTTAGT TTGGTACTTC TACTTTTTCC AATGGATAAA GCTTTGGAAT 405 GGAATCATGG ACACAACTGG AGTTATTGCT ATATA 17121 |||||||||| |||||||||| |||||||||| ||||| GGAATCATGG ACACAACTGG AGTTATTGCT ATATA 440 hqPGS_C09HBa0109D11.1-_SGN-E337588+ (20155 20005,17409 17121) ******************************************************************************** EST sequence 32 -strand 655 n (File: SGN-E395395-) 1 CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG GGTTACAGTT 61 GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG TTATTCCCTT 121 CATTGCGGGA CTACCAAGCC TGGAATATCT CCGATTACAG GATGTGTGTT TTCCTCAATC 181 AGAAGAGTGG TGCCTTGGAG ATATGACGTT CCATAAACTT AAGTTGTTGA AACTGGTGAA 241 GTTAAATATA TCAAGGTGGG ATGTCTCAGA GGAATCATTT CCGTTGCTTG AAACACTCGT 301 TATAAAGAAG TGCGGTGACC TAGAGGAGAT CCCAGTTAGC TTTGCTGATA TTCCCACATT 361 GGAACAGATT AAATTGATTG GGTCCTGGAA AGTATCTTTG GAGGATTCAG CTGTGAGAAT 421 GAAGGAAGAA ATCATACAGA TTGAAGGATG TGATCGTTTA CACCTCGTCA AACAACACTC 481 AGATTGATGA TAGCTAATTG TTGCAGCCAC TCAAGTCTTG CTAGCCCATT TTTCTTTTGT 541 TGTAACACAA ATACTATTTG GTACGTTTGT TTTCATTGAT ACACTCTTTT TATGTATCAT 601 ATGATTGGAG ATAAATATAA ATCAGTTGCT CATTCACTGA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 22082 to 20083): Exon 1 21472 20834 ( 639 n); cDNA 1 639 ( 639 n); score: 0.994 Intron 1 20833 20504 ( 330 n); Pd: 0.000 (s: 1.00), Pa: 0.916 (s: 0) Exon 2 20503 20490 ( 14 n); cDNA 640 653 ( 14 n); score: 0.643 MATCH C09HBa0109D11.1- SGN-E395395- 0.994 653 0.997 C PGS_C09HBa0109D11.1-_SGN-E395395- (21472 20834,20503 20490) Alignment (genomic DNA sequence = upper lines): CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG GGTTACAGTT 21413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG GGTTACAGTT 60 GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG TTATTCCCTT 21353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG TTATTCCCTT 120 CATTGCGGGA CTACCAAGCC TGGAATATCT CCGATTACAG GATGTGTGTT TTCCTCAATC 21293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCGGGA CTACCAAGCC TGGAATATCT CCGATTACAG GATGTGTGTT TTCCTCAATC 180 AGAAGAGTGG TGCCTTGGAG ATATGACGTT CCATAAACTT AAGTTGTTGA AACTGGTGAA 21233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAGTGG TGCCTTGGAG ATATGACGTT CCATAAACTT AAGTTGTTGA AACTGGTGAA 240 GTTAAATATA TCAAGGTGGG ATGTCTCAGA GGAATCATTT CCGTTGCTTG AAACACTCGT 21173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAAATATA TCAAGGTGGG ATGTCTCAGA GGAATCATTT CCGTTGCTTG AAACACTCGT 300 TATAAAGAAG TGCGGTGACC TAGAGGAGAT CCCAGTTAGC TTTGCTGATA TTCCCACATT 21113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAAAGAAG TGCGGTGACC TAGAGGAGAT CCCAGTTAGC TTTGCTGATA TTCCCACATT 360 GGAACAGATT AAATTGATTG GGTCCTGGAA AGTATCTCTG GAGGATTCAG CTGTGAGAAT 21053 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| GGAACAGATT AAATTGATTG GGTCCTGGAA AGTATCTTTG GAGGATTCAG CTGTGAGAAT 420 GAAGGAAGAA ATCATACAGA TTGAAGGATG TGATCGTTTA CACCTCGTCA AACAACACTC 20993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAAGAA ATCATACAGA TTGAAGGATG TGATCGTTTA CACCTCGTCA AACAACACTC 480 AGATTGATGA TAGCTAATTG TTGCAGCCAC TCAAGTCTTG CTAGCCCATT TCTCTTTTGT 20933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AGATTGATGA TAGCTAATTG TTGCAGCCAC TCAAGTCTTG CTAGCCCATT TTTCTTTTGT 540 TGTAACACAA CTACTATTTG CTACGTTTGT TTTCATTGAT ACACTCTTTT TATGTATCAT 20873 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGTAACACAA ATACTATTTG GTACGTTTGT TTTCATTGAT ACACTCTTTT TATGTATCAT 600 ATGATTGGAG ATAAATATAA ATCAGTTGCT CATTCACTGA TTTCTTCTTG TTATGCAGCT 20813 |||||||||| |||||||||| |||||||||| ||||||||| ATGATTGGAG ATAAATATAA ATCAGTTGCT CATTCACTG. .......... .......... 639 AGCTTTATGC TTTTGACCAA TTTCTCTCCA TTGAACATCT TCATATCTCA ATACACATCA 20753 .......... .......... .......... .......... .......... .......... 639 ACCATGTTGT TGATTTTATA ATTCGATCAA CGATCCGAAA AAGCTCAAGC TTAAATTTAC 20693 .......... .......... .......... .......... .......... .......... 639 TGCTGGAGAT GCAATATTTT TCAAAGGTTG GACAGATTCT TCTCTTTTCC CTTTGATCTA 20633 .......... .......... .......... .......... .......... .......... 639 AAGCCATACA GGGGAGATGT AAAAACAAAA TGAGTGTAAA ATTGTAGGCA AACTAGTCCA 20573 .......... .......... .......... .......... .......... .......... 639 AAGAATTCTC TTTTTATTTA AAAAAAATAA ATTCTTGTAT GGATAGTTGG TTCGTGATTC 20513 .......... .......... .......... .......... .......... .......... 639 AATTAATAGG TTAAAAAAAT CAA 20490 ||||||| || .........A AAAAAAAAAA AAA 653 hqPGS_C09HBa0109D11.1-_SGN-E395395- (21472 20834) ******************************************************************************** EST sequence 105 +strand 377 n (File: SGN-E203944+) 1 TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 61 ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 121 TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 181 TCAATCAGAA TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT 241 GCAGTTAGAT ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT 301 CGTTATAAGA TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC 361 ACTGAAACAG ATTAAGT Predicted gene structure (within gDNA segment 23644 to 19526): Exon 1 21478 21101 ( 378 n); cDNA 1 375 ( 375 n); score: 0.804 MATCH C09HBa0109D11.1- SGN-E203944+ 0.804 378 1.003 C PGS_C09HBa0109D11.1-_SGN-E203944+ (21478 21101) Alignment (genomic DNA sequence = upper lines): TCTTACCCAG CTTCAACAAC TTCAACTTTC CTTTGTGCGT CCCCGCACTC TATCCGGGTT 21419 |||||||||| |||||| || || | ||||| |||| | || || | |||| ||||| TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 60 ACAGTTGCCT TCAAATTTAA ATAAGTTGGT ACTTGAAGGA ATTCATATAG AAAGTGTTAT 21359 ||| |||||| |||||||||| | | |||||| ||| || | || ||| ||| | | ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 120 TCCCTTCATT GCGGGACTAC CAAGCCTGGA ATATCTCCGA TTACAGGATG TGTGTTTTCC 21299 | ||||| || || ||||||| |||||||||| ||||| | | ||| || ||| |||||| TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 180 TCAATCAGAA GAGTGGTGCC TTGGAGATAT GACGTTCCAT AAACTTAAGT TGTTGAAACT 21239 |||||||| | | ||||||| |||||||||| ||||| ||| ||||| |||| |||||||||| TCAATCAG-A -A-TGGTGCC TTGGAGATAT CACGTTTCAT AAACTCAAGT TGTTGAAACT 237 GGTGAAGTTA AATATATCAA GGTGGGATGT CTCAGAGGAA TCATTTCCGT TGCTTGAAAC 21179 |||| ||||| |||| |||| |||||||||| ||| |||||| || ||||| |||||||||| GGTGCAGTTA GATATCTCAA GGTGGGATGT CTCGGAGGAA TCCTTTCCCC TGCTTGAAAC 297 ACTCGTTATA AAGAAGTGCG GTGACCTAGA GGAGATCCCA GTTAGCTTTG CTGATATTCC 21119 | |||||||| | |||| | |||| || ||| ||||| ||||||||| | ||| |||| AATCGTTATA AGATGGTGCC ATAACCTCGA GGAAATCCCC ATTAGCTTTG CAGATGTTCC 357 CACATTGGAA CAGATTAA 21101 ||| || || |||||||| AACACTGAAA CAGATTAA 375 hqPGS_C09HBa0109D11.1-_SGN-E203944+ (21478 21101) ******************************************************************************** EST sequence 123 +strand 557 n (File: SGN-E302221+) 1 GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 61 TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 121 GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA TCAGTTATGT 181 TACGAGGGTG TTTTTGGGAA ATGGAACAAT TAAGGCATGT TGAGATCAAT GATGCTGAAT 241 TTGATAAGCA GGGGCTCTTT GAAGGATCCT CTAAATTGGA AAATTTGAGG ATATTAAAGA 301 ACATTGTTGG ATTTCCAATT GATAGGGCGG ATGTGTTATC AAGGAGGTGT CCTAATCTTC 361 AACAACTTCA AATCGAATTT GGATCTTTTG CAGAACCTCT TTGGCTCACA TTGGAGAATC 421 TTACCCAGCT TCAAATACTT GACCTTTCCT TTAGGTTGTT CCACATGCTA TCTGGGTTAC 481 AATTGCCTTC AAATTTAAAG ATGTTGGTAC TAAGAGACGC TGATCTAGAA AACCTAACTT 541 CCTTCTTTGC TGGACTA Predicted gene structure (within gDNA segment 24590 to 19086): Exon 1 21896 21340 ( 557 n); cDNA 1 557 ( 557 n); score: 0.763 MATCH C09HBa0109D11.1- SGN-E302221+ 0.763 557 1.000 C PGS_C09HBa0109D11.1-_SGN-E302221+ (21896 21340) Alignment (genomic DNA sequence = upper lines): GACTTCTTAA AGTCTTGGAT TTGAGTTCTT ATACTGTGGA ATTTTTGTCG TTAGCTACAT 21837 |||||||||| ||||||| | |||||||| | || || || | | || | ||||||| GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 60 TCAAACCACT AAATCAGCTG AAGTACCTCG CAGTTCAGGC TGATAAATTC TATTTTGATC 21777 | |||||||| ||| | ||| |||||||||| ||| ||| || ||| |||||||||| TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 120 CAGGATCACA TCTTCCCCAT ATAGAAACTT TCATTGTAAA GAATTTTCCT TATGGTATAG 21717 || |||||| ||| |||||| | ||||||| | ||||| || |||| | | || || GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA T-CAGT-TA- 177 GGTTACCAGT GTCTTTTTGG GAAATGAAAA AATTAAGGCA TGCTCATTTT GGTAAGGCTG 21657 ||||| || || ||||||| |||||| || |||||||||| || | | | | | |||| TGTTACGAGG GTGTTTTTGG GAAATGGAAC AATTAAGGCA TGTTGAGATC AATGATGCTG 237 AATTTGATAA GCAGGGGCTC TCTGAAGGAT CCTCTAAATT GGAAAATTTG AGGATATTAA 21597 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AATTTGATAA GCAGGGGCTC TTTGAAGGAT CCTCTAAATT GGAAAATTTG AGGATATTAA 297 AG-A-A-TAT T--A-TACAA TTTGATAGGG TGGATGTGTT ATCAACGAGG TGTCCTAATC 21543 || | | | | | | | | | ||||||||| ||||||||| ||||| |||| |||||||||| AGAACATTGT TGGATTTCCA ATTGATAGGG CGGATGTGTT ATCAAGGAGG TGTCCTAATC 357 TTCAACAACT TCAAATCACA TATTTTGGGA ATAATGAAGA GCCTTTTTGT CCCAAATTGG 21483 |||||||||| ||||||| | | ||||| | || ||| ||| |||| | || ||||| TTCAACAACT TCAAATC-GA -A-TTTGGAT CTTTTGCAGA ACCTCTTTGG CTCACATTGG 414 AGAATCTTAC CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG 21423 |||||||||| |||||||||| |||| | | |||||||| | || | | ||||| | AGAATCTTAC CCAGCTTCAA ATACTTGACC TTTCCTTTAG GTTGTTCCAC ATGCTATCTG 474 GGTTACAGTT GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG 21363 ||||||| || |||||||||| ||||| | || ||||||| || | || |||||| GGTTACAATT GCCTTCAAAT TTAAAGATGT TGGTACTAAG AGACGCTGAT CTAGAAAACC 534 TTATTCCCTT CATTGCGGGA CTA 21340 | | | |||| | |||| ||| ||| TAACTTCCTT CTTTGCTGGA CTA 557 hqPGS_C09HBa0109D11.1-_SGN-E302221+ (21896 21340) ******************************************************************************** EST sequence 107 +strand 664 n (File: SGN-E398442+) 1 TGAGTTCGAA GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG 61 TTTAAAGCCT TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC 121 TACATTGATA AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACATT 181 AATGGAAGAG GAAGCTGAAG GTTACTTGAT GGATCTCATT AGCAGTAACA TGGTAATGCT 241 TTCAAAGAGA AGTTATAAGG GTAAAGTCAA ATACTGTCAG GTTCATGATG TTGTGCATCA 301 CTTTTGCTTG GAAAAGAGTA GAGAAGCAAA GTTTATGCTT GCAGTGAAGG GTCAATATAT 361 CCAGTTTCAA CCTTTGGATT GGAAGGGAAC TCGAGTGAGC TTCAGTTTTA GTGAAGAGCT 421 TTCCAAGTTT GCATCTCTGG TCTCCAAAAC ACAGAAGCCT TTCCATCAAC ACTTGAGGTC 481 ATTGATAACG ACCAATCGAG CAGAATCTAT TGATGTGATT CTCTTCTGTC AGATTAGTGA 541 ATTGCGACTT CTTAAAGTCT TGGATTTGAG TTCTTATACT GTGGAATTTT TGTCGTTAGC 601 TACATTCAAA CCACTAAATC AGCTGAAGTA CCTCGCAGTT CAGGCTGATA AATTCTATTT 661 TGAT Predicted gene structure (within gDNA segment 23041 to 21168): Exon 1 22441 21778 ( 664 n); cDNA 1 664 ( 664 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E398442+ 1.000 664 1.000 C PGS_C09HBa0109D11.1-_SGN-E398442+ (22441 21778) Alignment (genomic DNA sequence = upper lines): TGAGTTCGAA GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG 22382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTCGAA GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG 60 TTTAAAGCCT TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC 22322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAAGCCT TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC 120 TACATTGATA AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACATT 22262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTGATA AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACATT 180 AATGGAAGAG GAAGCTGAAG GTTACTTGAT GGATCTCATT AGCAGTAACA TGGTAATGCT 22202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGAAGAG GAAGCTGAAG GTTACTTGAT GGATCTCATT AGCAGTAACA TGGTAATGCT 240 TTCAAAGAGA AGTTATAAGG GTAAAGTCAA ATACTGTCAG GTTCATGATG TTGTGCATCA 22142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAGAGA AGTTATAAGG GTAAAGTCAA ATACTGTCAG GTTCATGATG TTGTGCATCA 300 CTTTTGCTTG GAAAAGAGTA GAGAAGCAAA GTTTATGCTT GCAGTGAAGG GTCAATATAT 22082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTGCTTG GAAAAGAGTA GAGAAGCAAA GTTTATGCTT GCAGTGAAGG GTCAATATAT 360 CCAGTTTCAA CCTTTGGATT GGAAGGGAAC TCGAGTGAGC TTCAGTTTTA GTGAAGAGCT 22022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTTCAA CCTTTGGATT GGAAGGGAAC TCGAGTGAGC TTCAGTTTTA GTGAAGAGCT 420 TTCCAAGTTT GCATCTCTGG TCTCCAAAAC ACAGAAGCCT TTCCATCAAC ACTTGAGGTC 21962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAGTTT GCATCTCTGG TCTCCAAAAC ACAGAAGCCT TTCCATCAAC ACTTGAGGTC 480 ATTGATAACG ACCAATCGAG CAGAATCTAT TGATGTGATT CTCTTCTGTC AGATTAGTGA 21902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATAACG ACCAATCGAG CAGAATCTAT TGATGTGATT CTCTTCTGTC AGATTAGTGA 540 ATTGCGACTT CTTAAAGTCT TGGATTTGAG TTCTTATACT GTGGAATTTT TGTCGTTAGC 21842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCGACTT CTTAAAGTCT TGGATTTGAG TTCTTATACT GTGGAATTTT TGTCGTTAGC 600 TACATTCAAA CCACTAAATC AGCTGAAGTA CCTCGCAGTT CAGGCTGATA AATTCTATTT 21782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTCAAA CCACTAAATC AGCTGAAGTA CCTCGCAGTT CAGGCTGATA AATTCTATTT 660 TGAT 21778 |||| TGAT 664 hqPGS_C09HBa0109D11.1-_SGN-E398442+ (22441 21778) ******************************************************************************** EST sequence 100 +strand 499 n (File: SGN-E204998+) 1 GAGTTCGAAG AATATAGTCT GGCAACTATG CAGTTGAGTT TTGATAACTT ACCCCACTGT 61 TTAAAGCCTT GTCTTCTTTA TATGGGAATG TTTTCGGAGG ACGCAAGAAT TCCAGCATCT 121 ACATTGATAA GTTTATGGAT TGCTGAAGGA TTCGTGGAGA ACACTGAATC TGGTACATTA 181 ATGGAAGAGG AAGCTGAAGG TTACTTGATG GATCTCATTA GCAGTAACAT GGTAATGCTT 241 TCAAAGAGAA GTTATAAGGG TAAAGTCAAA TACTGTCAGG TTCATGATGT TGTGCATCAC 301 TTTTGCTTGG AAAAGAGTAG AGAAGCAAAG TTTATGCTTG CAGTGAAGGG TCAATATATC 361 CAGTTTCAAC CTTTGGATTG GAAGGGAACT CGAGTGAGCT TCAGTTTTAG TGAAGAGCTT 421 TCCAAGTTTG CATCTCTGGT CTCCAAAACA CAGAAGCCTT TCCATCAACA CTTGAGGTCA 481 TTGATAACGA CCAATCGAG Predicted gene structure (within gDNA segment 23040 to 21332): Exon 1 22440 21942 ( 499 n); cDNA 1 499 ( 499 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E204998+ 1.000 499 1.000 C PGS_C09HBa0109D11.1-_SGN-E204998+ (22440 21942) Alignment (genomic DNA sequence = upper lines): GAGTTCGAAG AATATAGTCT GGCAACTATG CAGTTGAGTT TTGATAACTT ACCCCACTGT 22381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCGAAG AATATAGTCT GGCAACTATG CAGTTGAGTT TTGATAACTT ACCCCACTGT 60 TTAAAGCCTT GTCTTCTTTA TATGGGAATG TTTTCGGAGG ACGCAAGAAT TCCAGCATCT 22321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGCCTT GTCTTCTTTA TATGGGAATG TTTTCGGAGG ACGCAAGAAT TCCAGCATCT 120 ACATTGATAA GTTTATGGAT TGCTGAAGGA TTCGTGGAGA ACACTGAATC TGGTACATTA 22261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGATAA GTTTATGGAT TGCTGAAGGA TTCGTGGAGA ACACTGAATC TGGTACATTA 180 ATGGAAGAGG AAGCTGAAGG TTACTTGATG GATCTCATTA GCAGTAACAT GGTAATGCTT 22201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAAGAGG AAGCTGAAGG TTACTTGATG GATCTCATTA GCAGTAACAT GGTAATGCTT 240 TCAAAGAGAA GTTATAAGGG TAAAGTCAAA TACTGTCAGG TTCATGATGT TGTGCATCAC 22141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGAGAA GTTATAAGGG TAAAGTCAAA TACTGTCAGG TTCATGATGT TGTGCATCAC 300 TTTTGCTTGG AAAAGAGTAG AGAAGCAAAG TTTATGCTTG CAGTGAAGGG TCAATATATC 22081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTTGG AAAAGAGTAG AGAAGCAAAG TTTATGCTTG CAGTGAAGGG TCAATATATC 360 CAGTTTCAAC CTTTGGATTG GAAGGGAACT CGAGTGAGCT TCAGTTTTAG TGAAGAGCTT 22021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTCAAC CTTTGGATTG GAAGGGAACT CGAGTGAGCT TCAGTTTTAG TGAAGAGCTT 420 TCCAAGTTTG CATCTCTGGT CTCCAAAACA CAGAAGCCTT TCCATCAACA CTTGAGGTCA 21961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGTTTG CATCTCTGGT CTCCAAAACA CAGAAGCCTT TCCATCAACA CTTGAGGTCA 480 TTGATAACGA CCAATCGAG 21942 |||||||||| ||||||||| TTGATAACGA CCAATCGAG 499 hqPGS_C09HBa0109D11.1-_SGN-E204998+ (22440 21942) ******************************************************************************** EST sequence 81 +strand 611 n (File: SGN-E371690+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 481 CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 541 AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 601 AAACCGAGTG A Predicted gene structure (within gDNA segment 23404 to 18605): Exon 1 22651 22044 ( 608 n); cDNA 1 611 ( 611 n); score: 0.877 MATCH C09HBa0109D11.1- SGN-E371690+ 0.877 608 0.995 C PGS_C09HBa0109D11.1-_SGN-E371690+ (22651 22044) Alignment (genomic DNA sequence = upper lines): AACAGAAGAG AGTTGCCAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTGCCCGCC 22592 || ||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC AAGCAGTAGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 22532 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 22472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATGCT TTATTTGACT ATCTTGACAG TGAGTTCGAA GAATATAGTC TGGCAACTAT 22412 ||||||| || ||||||||| | ||| | | ||||| ||| |||||||||| | ||||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TTTGATAACT TACCCCACTG TTTAAAGCCT TGTCTTCTTT ATATGGGAAT 22352 |||||||||| | |||||| || || |||| |||||||||| |||||||||| ||||||| || GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTTCGGAG GACGCAAGAA TTCCAGCATC TACATTGATA AGTTTATGGA TTGCTGAAGG 22292 |||| |||| || |||| || ||| || ||| | ||||||| ||| |||||| |||| ||||| GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 ATTCGTGGAG AACACTGAAT CTGGTACA-T -T-AATGGAA GAGGAAGCTG AAGGTTACTT 22235 ||| ||| || | || ||||| |||| | | | | |||||| |||| ||||| |||||||||| ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 420 GATGGATCTC ATTAGCAGTA ACATGGTAAT GCTTTCAAAG AGAAGTTATA AGGGTAAAGT 22175 |||||||||| ||| |||| || ||||||| | ||||||| ||||| |||| | ||||| || GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 480 CAAATACTGT CAGGTTCATG ATGTTGTGCA TCACTTTTGC TTGGAAAAGA GTAGAGAAGC 22115 |||||||||| |||||||||| | || |||| |||||||||| ||||| |||| || ||||| CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 540 AAAGTTTATG CTTGCAGTGA AGGGTCAATA TATCCAGTTT CAACCTTTGG ATTGGAAGGG 22055 |||||||||| | ||||||| |||| || | || ||||||| |||||||| | | ||||||| AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 600 AACTCGAGTG A 22044 || |||||| | AAACCGAGTG A 611 hqPGS_C09HBa0109D11.1-_SGN-E371690+ (22651 22044) ******************************************************************************** EST sequence 86 +strand 451 n (File: SGN-E241579+) 1 AAAAGGAAGA TTTCCCGCCT GAACTACAAG ATGTGAGTCG AGCACTTGCA GAAAAATGCA 61 CAGGACTGCC CCTAGTGGTT GACTTGGAAG CTGGAATAAT CAAAAAAAGG AAAATGGCAG 121 AATCTTGGTG GAATGAGGTG AAAGATATCT TTATTTGACC ACCTTAATCG TGAGTCGGAA 181 GAATATAGGC TTTCAACTAT GCAGGTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT 241 TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA 301 AGTCTATGGA TTGCTGAAAG AATTGTGCAG AGCATTGAAT CTGGGAGATT GATGATGGAA 361 GAGGCAGATG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT 421 ATAAGGTATA ATGGTAAGGT CAAATACTGT C Predicted gene structure (within gDNA segment 23759 to 19805): Exon 1 22610 22164 ( 447 n); cDNA 1 451 ( 451 n); score: 0.855 MATCH C09HBa0109D11.1- SGN-E241579+ 0.855 447 0.991 C PGS_C09HBa0109D11.1-_SGN-E241579+ (22610 22164) Alignment (genomic DNA sequence = upper lines): AAAAGGAAGA TTGCCCGCCT GAACTACAAG ATGTGAGTCA AGCAGTAGCA GAAAAATGCA 22551 |||||||||| || ||||||| |||||||||| ||||||||| |||| | ||| |||||||||| AAAAGGAAGA TTTCCCGCCT GAACTACAAG ATGTGAGTCG AGCACTTGCA GAAAAATGCA 60 AAGGACTGCC CCTAGTGGTT GTCTTGGTAG CTGGAATAAT CAAAAAAAGG AAAATGGAAG 22491 ||||||||| |||||||||| | ||||| || |||||||||| |||||||||| ||||||| || CAGGACTGCC CCTAGTGGTT GACTTGGAAG CTGGAATAAT CAAAAAAAGG AAAATGGCAG 120 AATCTTGGTG GAATGAGGTG AAAGAT-GCT TTATTTGACT ATCTTGACAG TGAGTTCGAA 22432 |||||||||| |||||||||| |||||| || ||||||||| | ||| | | ||||| ||| AATCTTGGTG GAATGAGGTG AAAGATATCT TTATTTGACC ACCTTAATCG TGAGTCGGAA 180 GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG TTTAAAGCCT 22372 |||||||| | | ||||||| |||| ||||| | |||||| || || |||| |||||||||| GAATATAGGC TTTCAACTAT GCAGGTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT 240 TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC TACATTGATA 22312 |||||||||| ||||||| || |||| |||| || |||| || ||| || ||| | ||||||| TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA 300 AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACATT -A--ATGGAA 22255 ||| |||||| |||||||| | | | ||| || | || ||||| |||| | ||| | |||||| AGTCTATGGA TTGCTGAAAG AATTGTGCAG AGCATTGAAT CTGGGAGATT GATGATGGAA 360 GAGGAAGCTG AAGGTTACTT GATGGATCTC ATTAGCAGTA ACATGGTAAT GCTTTCAAAG 22195 |||| || || |||||||||| |||||||||| ||| |||| || ||||||| | ||||||| GAGGCAGATG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT 420 AGAAGTTATA AGGGTAAAGT CAAATACTGT C 22164 | ||| |||| | ||||| || |||||||||| | ATAAGGTATA ATGGTAAGGT CAAATACTGT C 451 hqPGS_C09HBa0109D11.1-_SGN-E241579+ (22610 22164) ******************************************************************************** EST sequence 84 +strand 432 n (File: SGN-E280658+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC AT Predicted gene structure (within gDNA segment 23404 to 20395): Exon 1 22651 22223 ( 429 n); cDNA 1 432 ( 432 n); score: 0.889 MATCH C09HBa0109D11.1- SGN-E280658+ 0.889 429 0.993 C PGS_C09HBa0109D11.1-_SGN-E280658+ (22651 22223) Alignment (genomic DNA sequence = upper lines): AACAGAAGAG AGTTGCCAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTGCCCGCC 22592 || ||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC AAGCAGTAGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 22532 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 22472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATGCT TTATTTGACT ATCTTGACAG TGAGTTCGAA GAATATAGTC TGGCAACTAT 22412 ||||||| || ||||||||| | ||| | | ||||| ||| |||||||||| | ||||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TTTGATAACT TACCCCACTG TTTAAAGCCT TGTCTTCTTT ATATGGGAAT 22352 |||||||||| | |||||| || || |||| |||||||||| |||||||||| ||||||| || GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTTCGGAG GACGCAAGAA TTCCAGCATC TACATTGATA AGTTTATGGA TTGCTGAAGG 22292 |||| |||| || |||| || ||| || ||| | ||||||| ||| |||||| |||| ||||| GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 ATTCGTGGAG AACACTGAAT CTGGTACA-- -TTAATGGAA GAGGAAGCTG AAGGTTACTT 22235 ||| ||| || | || ||||| |||| | | || |||||| |||| ||||| |||||||||| ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 420 GATGGATCTC AT 22223 |||||||||| || GATGGATCTC AT 432 hqPGS_C09HBa0109D11.1-_SGN-E280658+ (22651 22223) ******************************************************************************** EST sequence 78 +strand 301 n (File: SGN-E370462+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 G Predicted gene structure (within gDNA segment 23404 to 21705): Exon 1 22651 22351 ( 301 n); cDNA 1 301 ( 301 n); score: 0.924 MATCH C09HBa0109D11.1- SGN-E370462+ 0.924 301 1.000 C PGS_C09HBa0109D11.1-_SGN-E370462+ (22651 22351) Alignment (genomic DNA sequence = upper lines): AACAGAAGAG AGTTGCCAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTGCCCGCC 22592 || ||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC AAGCAGTAGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 22532 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 22472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATGCT TTATTTGACT ATCTTGACAG TGAGTTCGAA GAATATAGTC TGGCAACTAT 22412 ||||||| || ||||||||| | ||| | | ||||| ||| |||||||||| | |||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 240 GCAGTTGAGT TTTGATAACT TACCCCACTG TTTAAAGCCT TGTCTTCTTT ATATGGGAAT 22352 |||||||||| | |||||| || || |||| |||||||||| |||||||||| ||||||| || GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 G 22351 | G 301 hqPGS_C09HBa0109D11.1-_SGN-E370462+ (22651 22351) ******************************************************************************** EST sequence 68 +strand 505 n (File: SGN-E300728+) 1 GACATATTAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 61 TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 121 GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 181 ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 241 AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 301 CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 361 GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 421 GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 481 CTTATTCTCT TCCGTTCCTC ACAAA Predicted gene structure (within gDNA segment 24365 to 21040): Exon 1 23153 22650 ( 504 n); cDNA 1 504 ( 504 n); score: 0.857 MATCH C09HBa0109D11.1- SGN-E300728+ 0.857 504 0.998 C PGS_C09HBa0109D11.1-_SGN-E300728+ (23153 22650) Alignment (genomic DNA sequence = upper lines): GACATAGCAA TCTTGTAACT GATGAGGAGG TAGTGGGTTT TGAGAATAAA GCAGAAGAAC 23094 |||||| || || || ||| |||||||| |||||||||| || |||| | |||| || GACATATTAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 60 TAATTGATTA TCTGATTAGA GGTACAAATG AGCTAGACGT TGTCCCAATT GTAGGCATGG 23034 | || | || |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 120 GAGGACAAGG GAAAACGACA ATTGCTAGAA AGTTGTACAA TAATGACATT ATTGTTTCTC 22974 | |||||||| |||||||||| ||||||||| || ||||||| || ||||| |||||||||| GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 180 GCTTTGATGT TCGAGCATGG TGCATCATTT CTCAAACGTA TAATCAGAGA GAGTTATTAC 22914 |||||||| |||||||||| |||||| ||| | ||||| || ||| | |||| || |||||| ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 240 AAGATATTTT TAGTCAAGTT ACAGGTTTCA ACGACAATGG AGCTACGGTT GACGTTCTTG 22854 |||| ||||| ||||||||| || |||| || | ||||| || | || | || | |||| AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 300 CCGACATGTT GAGGAGAAAA TTAATGGGAA AGAGATATCT CATTGTATTG GATGATATGT 22794 | || ||| ||||| || |||||||| | |||||||||| |||||| ||| |||||||||| CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 360 GGGATTGTAT GGTATGGGAT GACTTAAGGC TTTCTTTTCC AGATGTTGGA ATTAGAAGCA 22734 |||||||||| || ||||||| |||||||||| |||| ||||| |||| ||| | |||||||| GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 420 GAATAGTCGT AACAACTCGA CTTGAAGAAG TGGGTAAGCA AGTCAAGTAC CATACTGATC 22674 ||||||| || |||||||||| ||||| ||| |||| | || |||||||| | |||||||||| GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 480 CTTATTCTCT TCCATTCCTC ACAA 22650 |||||||||| ||| |||||| |||| CTTATTCTCT TCCGTTCCTC ACAA 504 hqPGS_C09HBa0109D11.1-_SGN-E300728+ (23153 22650) ******************************************************************************** EST sequence 89 +strand 794 n (File: SGN-E539103+) 1 TCTTGATTAT CTTAGTAGAG CTGGAAATGA AGAAAATTTT TCTCGGTGAA CTAAAGGCTT 61 CCAAGTTTAC TCAATCAAGA ACTTTCAAGG ACAAGAAATT ACCAAAAGGA TTTTCTCATC 121 ATCTCCATAG TCTGTTGATG TATCTTAGAA ACAAAAAGCT TGAGAAATTT CCTAATAATA 181 ACTCTCCTCA AAATATTGAT ATAGCAATAG AGTTCTTGTT GGTTTTCCTT GATGCTGATG 241 TCGGAAATCA TGTAATTAAT GGTAACTGGT TGAATGAAGT TATGGAAAAG GTTGGAGCTA 301 TAGCGGGTGA TGTTCTATAT GTAATTCAAA AGCTTCTTCC TAGCTCTATA AAAAAAGATG 361 ACAATAGCAA AATAAGTCTT TGCTCAATAC AGATATGGGA GAAAACTAAA GATCTGAAGG 421 CACAAGTGGA GACGCACTAT AAATCCTTAA AATTCACTCC ATCGCAATTC CCCACTGTTG 481 GTGGATGGAG CTTTCTGGAT TCTCTTATGC GGAAACTGAA AGAGATGTCG AAATCTAAAT 541 CTTGTTTAGA TTTCCTGATG AAACCTCTTT TGGGGAATTT GGAGAAAGAG CTATCAGCTC 601 TTACATCCAT TTTAGAGAAG GATCTGTCAT CTTTATCATC CATTTTAAGC GATGTCGCCA 661 AGGTGCACCA TGAACATGAA ATTCTTCAAG ATCTTCACAG GCGTACTATC AATTGGGCAT 721 ATGAAGCGGA AGTTGCGATT GACTCTATTC TTGCTCAGTA TAATGTCTTT TGGCATATTT 781 TTTGCTCACT TCCT Predicted gene structure (within gDNA segment 25355 to 22656): Exon 1 24042 23266 ( 777 n); cDNA 3 794 ( 792 n); score: 0.844 MATCH C09HBa0109D11.1- SGN-E539103+ 0.844 777 0.979 C PGS_C09HBa0109D11.1-_SGN-E539103+ (24042 23266) Alignment (genomic DNA sequence = upper lines): TTGATTGTGT TTGTGGAGCT GGAAATGAAG AAGCTTTTTC ATGGTGAAGT AAAGGCTTCA 23983 |||||| | | | || ||||| |||||||||| || |||||| |||||| | ||||||||| TTGATTATCT TAGTAGAGCT GGAAATGAAG AAAATTTTTC TCGGTGAACT AAAGGCTTCC 62 AAGTTTACTC GATCAAAAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCACATCAT 23923 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| AAGTTTACTC AATCAAGAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCTCATCAT 122 CTCCACAATC TGTTGATGTA TCTCAGAAAC AAAAAGCTCG AGAATTTTCC TAATAATATC 23863 ||||| | || |||||||||| ||| |||||| |||||||| | |||| ||||| |||||||| | CTCCATAGTC TGTTGATGTA TCTTAGAAAC AAAAAGCTTG AGAAATTTCC TAATAATAAC 182 GCTGCTCAAA ATATCGATGT GGCAATAGAG TTCTTGTTGG TTTTCCTTGA TGCTGATGTG 23803 || |||||| |||| ||| | ||||||||| |||||||||| |||||||||| ||||||||| TCTCCTCAAA ATATTGATAT AGCAATAGAG TTCTTGTTGG TTTTCCTTGA TGCTGATGTC 242 TCAAATCATG TTATTAATGG TAACTGGTTG AAAGAGGTCT TGTTAAAGGT TGGAGCTATA 23743 |||||||| | |||||||| |||||||||| || || || || |||||| |||||||||| GGAAATCATG TAATTAATGG TAACTGGTTG AATGAAGTTA TGGAAAAGGT TGGAGCTATA 302 GCGGGTGATA TTCTATATGT AATTCAAAAG CTTCTTCCTA GATCAATAAA CAAAGATGAA 23683 ||||||||| |||||||||| |||||||||| |||||||||| | || ||||| |||||||| GCGGGTGATG TTCTATATGT AATTCAAAAG CTTCTTCCTA GCTCTATAAA AAAAGATGAC 362 ACTAGCAACA TAAGTCTTTG CTCAATACAG ATATTGGAGA AGACTAAAGA TCTGAAGGCA 23623 | |||||| | |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| AATAGCAAAA TAAGTCTTTG CTCAATACAG ATATGGGAGA AAACTAAAGA TCTGAAGGCA 422 CAAGTTGAGA CGTACTACAA ATCCTTAAAA TTTACTCCAT CTCAGTTCCC CACCTTTGGT 23563 ||||| |||| || |||| || |||||||||| || ||||||| | || ||||| ||| ||||| CAAGTGGAGA CGCACTATAA ATCCTTAAAA TTCACTCCAT CGCAATTCCC CACTGTTGGT 482 GGATTGAGCT TTCTGGATTC TCTTTTAAGG AAACTGAATG AGATGTCGAC ATCTAAGTCC 23503 |||| ||||| |||||||||| |||| | || |||||||| | ||||||||| |||||| || GGATGGAGCT TTCTGGATTC TCTTATGCGG AAACTGAAAG AGATGTCGAA ATCTAAATCT 542 GGATTAGGTT TCCTGACGAA ACCTCTTTTA GGGAATTTGG AGAAAGAGCT ATCATCTCTT 23443 | |||| || |||||| ||| ||||||||| |||||||||| |||||||||| |||| ||||| TGTTTAGATT TCCTGATGAA ACCTCTTTTG GGGAATTTGG AGAAAGAGCT ATCAGCTCTT 602 GCATCCATTT TAGAGAAGGA ---G-C-TC- ---TCATCCA TTTTCAGTGA TGT---C--- 23398 ||||||||| |||||||||| | | || ||||||| |||| || || ||| | ACATCCATTT TAGAGAAGGA TCTGTCATCT TTATCATCCA TTTTAAGCGA TGTCGCCAAG 662 GTGCACCATG AACATAACAT TCCTAAAGAT CTTCAGAGAC GTACCATCAA TTTGGCATGT 23338 |||||||||| ||||| | || || | ||||| ||||| || | |||| ||||| || ||||| | GTGCACCATG AACATGAAAT TCTTCAAGAT CTTCACAGGC GTACTATCAA TTGGGCATAT 722 GAGGCTGAGG TTGCTATTGA TTCTATTCTT GCTCAGTATA ATGTTTTTTT GCATATTTTT 23278 || || || | |||| ||||| ||||||||| |||||||||| |||| |||| |||||||||| GAAGCGGAAG TTGCGATTGA CTCTATTCTT GCTCAGTATA ATGTCTTTTG GCATATTTTT 782 TGCTCACTTC CT 23266 |||||||||| || TGCTCACTTC CT 794 hqPGS_C09HBa0109D11.1-_SGN-E539103+ (24042 23266) ******************************************************************************** EST sequence 98 +strand 377 n (File: SGN-E280953+) 1 CTTGATTATC TTAGTAGAGC TGGAAATGAA GAAAATTTTT CTCGGTGAAC TAAAGGCTTC 61 CAAGTTTACT CAATCAAGAA CTTTCAAGGA CAAGAAATTA CCAAAAGGAT TTTCTCATCA 121 TCTCCATAGT CTGGTGATGT ATCTTAGAAA CAAAAAGCTT GAGAAATTTC CTAATAATAA 181 CTCTCCTCAA AATATTGATA TAGCAATAGA GGTCTTGTTG GTTTTCCTTG ATGCTGATGT 241 CGGAAATCAT GTAATTAATG GTAACTGGTT GAATGAAGTT ATGGAAAAGG TTGGAGCTAT 301 AGCGGGTGAT GTTCTATATG TAATTCAAAA GCTTCTTCCT AGCTCTATTA AAAAAGATGA 361 CAATAGCCAA ATAAGTC Predicted gene structure (within gDNA segment 25345 to 22742): Exon 1 24042 23667 ( 376 n); cDNA 2 377 ( 376 n); score: 0.880 MATCH C09HBa0109D11.1- SGN-E280953+ 0.880 376 0.997 C PGS_C09HBa0109D11.1-_SGN-E280953+ (24042 23667) Alignment (genomic DNA sequence = upper lines): TTGATTGTGT TTGTGGAGCT GGAAATGAAG AAGCTTTTTC ATGGTGAAGT AAAGGCTTCA 23983 |||||| | | | || ||||| |||||||||| || |||||| |||||| | ||||||||| TTGATTATCT TAGTAGAGCT GGAAATGAAG AAAATTTTTC TCGGTGAACT AAAGGCTTCC 61 AAGTTTACTC GATCAAAAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCACATCAT 23923 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| AAGTTTACTC AATCAAGAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCTCATCAT 121 CTCCACAATC TGTTGATGTA TCTCAGAAAC AAAAAGCTCG AGAATTTTCC TAATAATATC 23863 ||||| | || || ||||||| ||| |||||| |||||||| | |||| ||||| |||||||| | CTCCATAGTC TGGTGATGTA TCTTAGAAAC AAAAAGCTTG AGAAATTTCC TAATAATAAC 181 GCTGCTCAAA ATATCGATGT GGCAATAGAG TTCTTGTTGG TTTTCCTTGA TGCTGATGTG 23803 || |||||| |||| ||| | ||||||||| ||||||||| |||||||||| ||||||||| TCTCCTCAAA ATATTGATAT AGCAATAGAG GTCTTGTTGG TTTTCCTTGA TGCTGATGTC 241 TCAAATCATG TTATTAATGG TAACTGGTTG AAAGAGGTCT TGTTAAAGGT TGGAGCTATA 23743 |||||||| | |||||||| |||||||||| || || || || |||||| |||||||||| GGAAATCATG TAATTAATGG TAACTGGTTG AATGAAGTTA TGGAAAAGGT TGGAGCTATA 301 GCGGGTGATA TTCTATATGT AATTCAAAAG CTTCTTCCTA GATCAATAAA CAAAGATGAA 23683 ||||||||| |||||||||| |||||||||| |||||||||| | || || || |||||||| GCGGGTGATG TTCTATATGT AATTCAAAAG CTTCTTCCTA GCTCTATTAA AAAAGATGAC 361 ACTAGCAACA TAAGTC 23667 | |||| | | |||||| AATAGCCAAA TAAGTC 377 hqPGS_C09HBa0109D11.1-_SGN-E280953+ (24042 23667) ******************************************************************************** EST sequence 18 +strand 552 n (File: SGN-E302506+) 1 AACATCTTCT TCATCACAAG GTTCAATGAG CCACACCAGC ACCACCGCTG GCGGCGCCGG 61 CGGTGGTCTC ACTCGCTACG GTTCAGCTCC GGGATCATTT TTAACTACAG CAGTTGAAGC 121 CGTCGTTAAC GGTAATCACG AGTTCGCTTC TCACGGATCT CATCACTCAC ACCTTGGTCC 181 TTCACGGTTT TTTCAGTCCA ATCTAGCATC TACTTCGTTA AATTCCGAAT CTACAAGTAA 241 AGCGAAGGAA CAATCGAATT TACAGAGGTC AATTGGTTTC AATGACTTAA CAATCGGCGG 301 CGGAAGCGGC GCTGGAGGAG GAGTTTTGCC GACGACTTCA ACGACGCCGT TGGTTCGACA 361 TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG ATACTGTTTC 421 AATGGGGAGA GGAAGCTATA ACCCAAAAGG CGGTGGAGAT AGTGGCCGGG GAATAACAAG 481 GCTGAACTCT CAGCTCAGCT TCACAACGCA AGAAGCTCTT TCTCAAATAG CAGAGGAAAA 541 TGAGGATATT GA Predicted gene structure (within gDNA segment 41192 to 47921): Exon 1 41792 42207 ( 416 n); cDNA 1 416 ( 416 n); score: 1.000 Intron 1 42208 47175 (4968 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 47176 47311 ( 136 n); cDNA 417 552 ( 136 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E302506+ 1.000 552 1.000 C PGS_C09HBa0109D11.1+_SGN-E302506+ (41792 42207,47176 47311) Alignment (genomic DNA sequence = upper lines): AACATCTTCT TCATCACAAG GTTCAATGAG CCACACCAGC ACCACCGCTG GCGGCGCCGG 41851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATCTTCT TCATCACAAG GTTCAATGAG CCACACCAGC ACCACCGCTG GCGGCGCCGG 60 CGGTGGTCTC ACTCGCTACG GTTCAGCTCC GGGATCATTT TTAACTACAG CAGTTGAAGC 41911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGGTCTC ACTCGCTACG GTTCAGCTCC GGGATCATTT TTAACTACAG CAGTTGAAGC 120 CGTCGTTAAC GGTAATCACG AGTTCGCTTC TCACGGATCT CATCACTCAC ACCTTGGTCC 41971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGTTAAC GGTAATCACG AGTTCGCTTC TCACGGATCT CATCACTCAC ACCTTGGTCC 180 TTCACGGTTT TTTCAGTCCA ATCTAGCATC TACTTCGTTA AATTCCGAAT CTACAAGTAA 42031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACGGTTT TTTCAGTCCA ATCTAGCATC TACTTCGTTA AATTCCGAAT CTACAAGTAA 240 AGCGAAGGAA CAATCGAATT TACAGAGGTC AATTGGTTTC AATGACTTAA CAATCGGCGG 42091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGAAGGAA CAATCGAATT TACAGAGGTC AATTGGTTTC AATGACTTAA CAATCGGCGG 300 CGGAAGCGGC GCTGGAGGAG GAGTTTTGCC GACGACTTCA ACGACGCCGT TGGTTCGACA 42151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGCGGC GCTGGAGGAG GAGTTTTGCC GACGACTTCA ACGACGCCGT TGGTTCGACA 360 TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG ATACTGGTAA 42211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG ATACTG.... 416 GTTTTCAACT TCCCTTTTTT TCCTAATTGA TATGTCAAAT GACGAATTTA ACCTTCCTGT 42271 .......... .......... .......... .......... .......... .......... 416 ATATGATTCC TTTCTGTTTG CTTTTTTTTT TTTCCTGCTA AAGTCATCAG CATTTGGTAA 42331 .......... .......... .......... .......... .......... .......... 416 CTTTTTTAAC CAATCAGAGT AGACTTTGCT AATTGACTAA TCACAACTAA CTTTGCATAA 42391 .......... .......... .......... .......... .......... .......... 416 ATTAACAAAC TTTGAAATGC ATTTTACATT TTAAAGTATT CCCTGGTTAC ATTTTGTCCA 42451 .......... .......... .......... .......... .......... .......... 416 CATGACAAAG TTAATTTCGA CACAAAATTT AAGAAAGAAA TAATATTTTT ATAGTTAAAC 42511 .......... .......... .......... .......... .......... .......... 416 ATGTTAGAAT AATTTTATAG CTATTTAAAT CGTAAAAATA ATTTCTTACA AAAATGTTAA 42571 .......... .......... .......... .......... .......... .......... 416 ATTGAATTAC GAACAATAAG CTCTTGTGAT CTGTTTTTTT TCCAAACCCC AGACACAGCA 42631 .......... .......... .......... .......... .......... .......... 416 GAAGCTTAAT TAATGCGTTG AGTTACCTTT TAAAGAAAGT GTAATTAGCT ACCGATGAAA 42691 .......... .......... .......... .......... .......... .......... 416 TGAGAAAGTA GGTTTCTTGC AGATAGAACC AATTAATGGA GGATTAACTT ATATTAATCA 42751 .......... .......... .......... .......... .......... .......... 416 TCTCATTGGA CTTCATTAAC TTCTAAATGA ATTGTCATGA GATTACAGTA CAAAAGTAAG 42811 .......... .......... .......... .......... .......... .......... 416 ATTTACTTAT GTCACAATTA GACGTTATAA ACTGACTAGT TGAGCACTTA AACATAAATA 42871 .......... .......... .......... .......... .......... .......... 416 ATTACTCAAA AAAGGACACA TATAGAGTAA GTGGGGAAAT ATGCTAAGAG TAATTGAGTT 42931 .......... .......... .......... .......... .......... .......... 416 TGTCTTATCT AATTACATAT AACAAGTTGC TAAAAAAAAT TTACCAAAAG ATTAAAAGAG 42991 .......... .......... .......... .......... .......... .......... 416 TTATGTACAT GTTTAAGGAT ATACTTAGTA CTCGAAGAAT CTTTAATACC TCCTTACAAC 43051 .......... .......... .......... .......... .......... .......... 416 TTGCAAACTC ATTTTTTCTT TCCCTCCATA TGATTAGTAC TTTTAACTTC TAATCTTAAA 43111 .......... .......... .......... .......... .......... .......... 416 AAAGAAGTAC TACTTCATTT GTCCCACTTC ATGCAGTTAC TAAAATGGTG AGCTAAAAGG 43171 .......... .......... .......... .......... .......... .......... 416 AATTCTATAA AAATTTTGAA CTATGAATTA TTAAATTTAT ATTACATTTT AAGCAATTTT 43231 .......... .......... .......... .......... .......... .......... 416 AAATATGTAA TTTCTTTTTA AAAAGATATA TGTCCATCAA TTATTGAATC ATCTCACATA 43291 .......... .......... .......... .......... .......... .......... 416 AAATGGAACA CAGAAAATAT ATCATATCAA CAAAAGTTTA GCTAATTCTA CTTTTCCTAT 43351 .......... .......... .......... .......... .......... .......... 416 GGTGAGTGTA TTTTTGTGTC TGCTCTTTTT ATCTGTCTAA GATAATAACA ATAACATACT 43411 .......... .......... .......... .......... .......... .......... 416 TAATATAATC TTATAACAGA AGTCTCGAAA GTACAGAATG TACATATATT TTATGTCTAT 43471 .......... .......... .......... .......... .......... .......... 416 TTTGTAGAAA TCAAATCACT AAAAACAGTT TCATCTTTTA TCTATCTACC TTCTACCATT 43531 .......... .......... .......... .......... .......... .......... 416 TCCAAATTTA TACTTTCCAA TCTTGACAAG TATGTTAGAT AGACTTCTGT AGTTCATGTT 43591 .......... .......... .......... .......... .......... .......... 416 TGTAATTGAA TACATCGTGT AATTCAAGGT TTATACTCCC TCTAGTCCCA ATTATCAATC 43651 .......... .......... .......... .......... .......... .......... 416 GTTTGACAAG TTGAAATTAT TTATAAATAT TAGTATCCAT TTTAGAAATA CAAGAAATGA 43711 .......... .......... .......... .......... .......... .......... 416 TTTGTTAATC CTTTCGTTTC AATTTATGTG TCATAATTTG ATTTTGTACA AACTTTAGAA 43771 .......... .......... .......... .......... .......... .......... 416 AAAAAAGTAC ATACGTCTAC AAGTTTTGGT CTGTAACATC CCAAAACATA TATGTAACTT 43831 .......... .......... .......... .......... .......... .......... 416 TTATAAGATG TGTATACATT AAAAACTTCA GATTAAAAAT GTGTCATTAT TTTGAAGCAT 43891 .......... .......... .......... .......... .......... .......... 416 ATAAAAAAAA TTTGATACAT TTAGCTAAAA TTATATATTT ATTTCGAGAA ATTCATTTAA 43951 .......... .......... .......... .......... .......... .......... 416 CATAAATAAA TTCTTGTTTT ACAACCAACT TAATGATTTA GAATTCAAAA GTTATATACT 44011 .......... .......... .......... .......... .......... .......... 416 CTAAATCTTA ATTCCGCTTA TTGTTAATTA ATATAAAAAG TAGAGGGGAA CAATCTTGGG 44071 .......... .......... .......... .......... .......... .......... 416 TTAGCTTAAA ATAAATGGAA TTAGTTTCCT AAATTAGAAG GTATATAACG TAAGCAGCCG 44131 .......... .......... .......... .......... .......... .......... 416 CAAATTATTA TTTGCTCTCT TTTAAAAATA ACTTATCCAT CAATAGGGCA AATTAGGTGA 44191 .......... .......... .......... .......... .......... .......... 416 TTAGTGGAGC TAATTGGTAG GTCTAAATCC TGTCTCAACT CTTAGTGACA TGTAAAGGTG 44251 .......... .......... .......... .......... .......... .......... 416 GGTTCCACAT TTGGTGAAGG TGAATGCATG TGTGTCTGCT AAGTTTCCAA TCGCCCACAA 44311 .......... .......... .......... .......... .......... .......... 416 CATTTGGCCA ATGAAACCAC TGGTATTAAT TAATTACTCA TTAGATGGTG GATCCTTCTT 44371 .......... .......... .......... .......... .......... .......... 416 TAAGATAGAA TCTCATTAGC ACTAATTAAT ATTTTTTTTA AAAAAAAAAT GTTTCTGGAG 44431 .......... .......... .......... .......... .......... .......... 416 ATAGGATTTG GGGTGGGGGT TGAACGGAGT TAGATGCAAC TTGTGCAATT TGACACTGCT 44491 .......... .......... .......... .......... .......... .......... 416 GAGCTTATAA ACAATAATAT ACCGTAATGG TGAGAAAATT TAAAGAAGTT ATAAGTTAAT 44551 .......... .......... .......... .......... .......... .......... 416 ATATTAAACA AATTTGTTAC TTTTAGTTTT TTATAACTAT TATATTTAAA CCAACTTGCA 44611 .......... .......... .......... .......... .......... .......... 416 TGTATCTAAT TAATTACGTA TATGTAGTTA ATTATATAAA AGTCAAATTT TATTTCTTTT 44671 .......... .......... .......... .......... .......... .......... 416 TAGTCTAAGA GGTAAGGGAT TTGATCTTAA TGGTAAAAGT ATAACGTGTG ATATTCAAAA 44731 .......... .......... .......... .......... .......... .......... 416 TGGAGAAGAT CAGAAAGATG AATTCATTAT CCATTGAACT GTGAATCATG CATCACTGAT 44791 .......... .......... .......... .......... .......... .......... 416 CCTTGTTGTT TTTCGATTTT AATAAAAAAA TATTTGACCT TTGTATTAAT ATAATTAATG 44851 .......... .......... .......... .......... .......... .......... 416 GTGCCTAGAT CCTTAGAAGC AGGGAAGGGA GAAAGAATGA TACTACTTTT GTAAATTAAT 44911 .......... .......... .......... .......... .......... .......... 416 TTGATATGAG GTGGGGAGAC TGAAAGGCTA TGCTTTTATT GTCAACTATC AGAAACTCTA 44971 .......... .......... .......... .......... .......... .......... 416 CAACTCATTT TGATCATCTA AGTTGGTTAG ACTTTTTTAA TTTGTTATTA CGATTCATTT 45031 .......... .......... .......... .......... .......... .......... 416 AAAATGCACT ATTTTAAAAG ACCTGACATG CAATTTTCTA TATTTTTGAA ATGTCCGATC 45091 .......... .......... .......... .......... .......... .......... 416 GGTATAGAAA TAAATTCTCC TTTCAACTAA AAGGGTGGTT TAATCTATGA TTTTTTGCCA 45151 .......... .......... .......... .......... .......... .......... 416 ATAAGATATA TTGATTTGGA ATAGGACATA CAATGTGGAT GCTTTGACCT CGAAAAAAGG 45211 .......... .......... .......... .......... .......... .......... 416 CAATTTATTC TCTATTAATT TTTTAAAATA ATTATAATCT ACTCTACGTT AGGTTTAGGT 45271 .......... .......... .......... .......... .......... .......... 416 CTACTATTAG ACCTTTAATC GTTGTATTAG TTTCTTAAGT TAATGTGTGT ATGAACTAAG 45331 .......... .......... .......... .......... .......... .......... 416 TCATGATCAT TATGTCACAC AAACTTGAAT GGGTCAATAA AGTTGTGTTG CGGTTCCTTT 45391 .......... .......... .......... .......... .......... .......... 416 ATTCATTTTT TCTACTTATG GTAATTGATA TATGAGAGGT TGGAGTGTGC TTCTTTGAGC 45451 .......... .......... .......... .......... .......... .......... 416 ACTGAGTCTA TTCCATTAGT TATGTTGTAG TTTTCTTTTC TTCAACCCAA ATAAAACAAT 45511 .......... .......... .......... .......... .......... .......... 416 AAATAAATTA ATTAATTAAA CGAGCACAAC TTGGGACTTA TTATTCATTT TATTTCATTT 45571 .......... .......... .......... .......... .......... .......... 416 TATATGGTAT CATTTTTATT AAAAAATTTA TTCCATGAAT AATTACGATA ACATATATGT 45631 .......... .......... .......... .......... .......... .......... 416 ATAATATCAC AAATAGAATA TAGGGAGGAC AATATGTACT TCTTTACTAG GTGATGAAAC 45691 .......... .......... .......... .......... .......... .......... 416 TTTAGGCTAA GAAAAAATTA TTTGAAGTAA GATTGTCAAA AAATATTTGA AACAGAATAT 45751 .......... .......... .......... .......... .......... .......... 416 TGTATAATTA TGTAGTAATG TAATAGAAAG AATTGAAAAA CTTTCAGGGG CCAAAAAGTA 45811 .......... .......... .......... .......... .......... .......... 416 TTTTGTGGTC TCTGTAAATT ATACGAGTAG AGATATAAGT TTTGGAATTA TTAATTGATT 45871 .......... .......... .......... .......... .......... .......... 416 TTATAGAACA AGTTGTCACT TGGGCCCAAT GAGCAATATA GATATTAGAG TATTATTTTG 45931 .......... .......... .......... .......... .......... .......... 416 TTGTTTCCTT AATCATAATC TTAGTAAGAA GCTCCTTATT GGAGGAAGTG AGCATTTCTT 45991 .......... .......... .......... .......... .......... .......... 416 TTGTGGGGTC CAAACTTTCA AATATAGCAA GTTGACATTA TATAAAATAT AAAATTCTAG 46051 .......... .......... .......... .......... .......... .......... 416 TAAAAGTAGC AACTAGCCAA TAAAATAATG AATAAAGGAA AGGGAAGGAG TTTTGTCCCT 46111 .......... .......... .......... .......... .......... .......... 416 TTATTTAATT GATGGTGATT GTGCCTACGA TTCTTTGAAT CCATTTTTTA CTTATTTTGA 46171 .......... .......... .......... .......... .......... .......... 416 GGTCAAGATG CATTCACCAA ACAGCTCCTA AAATTCCATG ACTGGTCAGT TATCACGTGC 46231 .......... .......... .......... .......... .......... .......... 416 ATGGGTATTT ACTTGACCCG TTTATTCCCA CTTGCTCTAT CCATTATTAT TATTATTATT 46291 .......... .......... .......... .......... .......... .......... 416 ATCTTAGCCG CCACCTAAAA CCAGCCCAAT GTTTTTGAGT GCTTTACTAG TTCTAAGATA 46351 .......... .......... .......... .......... .......... .......... 416 TTTTCTGAAA GTTTTACAGT CGACTGTTAG CAGATGATCC TGTTTTTATT TGTTGGTGTA 46411 .......... .......... .......... .......... .......... .......... 416 ATTTATGATT CTTCATATAA GAAATGCTTT GATTATGATC TTAAATTTTG TAGACAATAA 46471 .......... .......... .......... .......... .......... .......... 416 ACAAACTTCA ATGTTTTGTT AGTTTCAAAG GCTTATATTT TCACAACTTG TGAAAATAGT 46531 .......... .......... .......... .......... .......... .......... 416 GATTAAATTT AAATGATGAC TTATTTTAAA AAATTTTTAA ATCAAGGACT TTCTCATTTA 46591 .......... .......... .......... .......... .......... .......... 416 CTATTCATAT TTTGTTTTGT CTAGTGGTTA ACGAAGGAGG TTTAAGCATT ATAAGGTCCT 46651 .......... .......... .......... .......... .......... .......... 416 AGGTTCAGTT CCTAACAAAG AGAAAACACT AGGTGATATT TTCCCTCATA TATCCCATGA 46711 .......... .......... .......... .......... .......... .......... 416 AATGGAGCTT TAGTAGATCA GTTAGTTTTG AGTTGAGGGT CTATCGAAAA CAATCTCTCT 46771 .......... .......... .......... .......... .......... .......... 416 ACCCCACAAG GTAGGATAAG GTGTGTGTAT CTTATTTTCG TTGGTTTTAT CTTTAGTTTG 46831 .......... .......... .......... .......... .......... .......... 416 AGTAGTAATA TTCATACCTT GTCAAACAAA GACTTCAAAT TAGATATCAA ATGGAAGTCT 46891 .......... .......... .......... .......... .......... .......... 416 AACAATTTGA TGTGGAAAAG AGGATCTCTT TTATGTTATG TCTGTAATAT ACTTTAATTT 46951 .......... .......... .......... .......... .......... .......... 416 TGTCAAAGAA GACCTTAATA TATAGAGCCA AAAGAGACCA AATACTTTTC CATGGAGACT 47011 .......... .......... .......... .......... .......... .......... 416 ACAAGGGTCA CACCAGAACT ATCAGCTTTT GAGATGACAT TTTTGAATCA AACTCACGAA 47071 .......... .......... .......... .......... .......... .......... 416 AAGATTCATA TCTAATATGT TGTAAAGGTT TTAATTTGGT AAAAAGAACT CGTTACCATA 47131 .......... .......... .......... .......... .......... .......... 416 ACTTGTAGTA TAATTCAAGT TTGACTTGAC GTTAGGATTT TCAGTTTCAA TGGGGAGAGG 47191 |||||| |||||||||| .......... .......... .......... .......... ....TTTCAA TGGGGAGAGG 432 AAGCTATAAC CCAAAAGGCG GTGGAGATAG TGGCCGGGGA ATAACAAGGC TGAACTCTCA 47251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTATAAC CCAAAAGGCG GTGGAGATAG TGGCCGGGGA ATAACAAGGC TGAACTCTCA 492 GCTCAGCTTC ACAACGCAAG AAGCTCTTTC TCAAATAGCA GAGGAAAATG AGGATATTGA 47311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAGCTTC ACAACGCAAG AAGCTCTTTC TCAAATAGCA GAGGAAAATG AGGATATTGA 552 hqPGS_C09HBa0109D11.1+_SGN-E302506+ (41792 42207,47176 47311) ******************************************************************************** EST sequence 93 -strand 683 n (File: SGN-E302507-) 1 TGGTTCGACA TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG 61 ATACTGTTTC AATGGGGAGA GGAAGCTATA ACCCAAAAGG CGGTGGAGAT AGTGGCCGGG 121 GAATAACAAG GCTGAACTCT CAGCTCAGCT TCACAACGCA AGAAGCTCTT TCTCAAATAG 181 CAGAGGAAAA TGAGGATATT GAAGGGACCA GTATAGCCAA TGGCCACAGA AAGTCAACAC 241 ATTCTTATGC CAGTGCAAGT AGTTTCGCGA TGGGTTCTTG GGAAGATAAC AACTCTATAA 301 TGTTCTCTGT CACACCTAGC AAACGATCCA AGCAGATTAG CAATGACATT GTCAATGGGC 361 TCGATGACGG GGAAACTCAG CTAATATGAA CTTGAAGGTC ACTATCAGAA AACACATAAA 421 CCTTCACCGT TTGACATCTG TGTTTTCAAC ATGTAAACGG CGATAGATAT ACTTCCTTTA 481 CATTTTTCCC CTTAACAACC TTACAACTAC ATTCTGTGTA TGTGTTTCTT TTCTTTCTGC 541 AGAAGTATGT AAAATAAAAT AGACAAAATA ATCCATGTTG GCATACTCAA TCATGTTTCT 601 CGTGTGTAAC TCACACAAAA ATTGATGAAA ACTGCATTTT TATTACTTGT GGGAGGATGA 661 ACTGATGTTT TTCAAAAAAA AAA Predicted gene structure (within gDNA segment 41532 to 48821): Exon 1 42142 42207 ( 66 n); cDNA 1 66 ( 66 n); score: 1.000 Intron 1 42208 47175 (4968 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 47176 47489 ( 314 n); cDNA 67 380 ( 314 n); score: 1.000 Intron 2 47490 47828 ( 339 n); Pd: 1.000 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 3 47829 48131 ( 303 n); cDNA 381 683 ( 303 n); score: 0.977 MATCH C09HBa0109D11.1+ SGN-E302507- 0.990 683 1.000 C PGS_C09HBa0109D11.1+_SGN-E302507- (42142 42207,47176 47489,47829 48131) Alignment (genomic DNA sequence = upper lines): TGGTTCGACA TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG 42201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCGACA TAGTAGCTCA CCGGCGAGGT TCCTTAATCA ACTTGCTACT GCTGCAGGTG 60 ATACTGGTAA GTTTTCAACT TCCCTTTTTT TCCTAATTGA TATGTCAAAT GACGAATTTA 42261 |||||| ATACTG.... .......... .......... .......... .......... .......... 66 ACCTTCCTGT ATATGATTCC TTTCTGTTTG CTTTTTTTTT TTTCCTGCTA AAGTCATCAG 42321 .......... .......... .......... .......... .......... .......... 66 CATTTGGTAA CTTTTTTAAC CAATCAGAGT AGACTTTGCT AATTGACTAA TCACAACTAA 42381 .......... .......... .......... .......... .......... .......... 66 CTTTGCATAA ATTAACAAAC TTTGAAATGC ATTTTACATT TTAAAGTATT CCCTGGTTAC 42441 .......... .......... .......... .......... .......... .......... 66 ATTTTGTCCA CATGACAAAG TTAATTTCGA CACAAAATTT AAGAAAGAAA TAATATTTTT 42501 .......... .......... .......... .......... .......... .......... 66 ATAGTTAAAC ATGTTAGAAT AATTTTATAG CTATTTAAAT CGTAAAAATA ATTTCTTACA 42561 .......... .......... .......... .......... .......... .......... 66 AAAATGTTAA ATTGAATTAC GAACAATAAG CTCTTGTGAT CTGTTTTTTT TCCAAACCCC 42621 .......... .......... .......... .......... .......... .......... 66 AGACACAGCA GAAGCTTAAT TAATGCGTTG AGTTACCTTT TAAAGAAAGT GTAATTAGCT 42681 .......... .......... .......... .......... .......... .......... 66 ACCGATGAAA TGAGAAAGTA GGTTTCTTGC AGATAGAACC AATTAATGGA GGATTAACTT 42741 .......... .......... .......... .......... .......... .......... 66 ATATTAATCA TCTCATTGGA CTTCATTAAC TTCTAAATGA ATTGTCATGA GATTACAGTA 42801 .......... .......... .......... .......... .......... .......... 66 CAAAAGTAAG ATTTACTTAT GTCACAATTA GACGTTATAA ACTGACTAGT TGAGCACTTA 42861 .......... .......... .......... .......... .......... .......... 66 AACATAAATA ATTACTCAAA AAAGGACACA TATAGAGTAA GTGGGGAAAT ATGCTAAGAG 42921 .......... .......... .......... .......... .......... .......... 66 TAATTGAGTT TGTCTTATCT AATTACATAT AACAAGTTGC TAAAAAAAAT TTACCAAAAG 42981 .......... .......... .......... .......... .......... .......... 66 ATTAAAAGAG TTATGTACAT GTTTAAGGAT ATACTTAGTA CTCGAAGAAT CTTTAATACC 43041 .......... .......... .......... .......... .......... .......... 66 TCCTTACAAC TTGCAAACTC ATTTTTTCTT TCCCTCCATA TGATTAGTAC TTTTAACTTC 43101 .......... .......... .......... .......... .......... .......... 66 TAATCTTAAA AAAGAAGTAC TACTTCATTT GTCCCACTTC ATGCAGTTAC TAAAATGGTG 43161 .......... .......... .......... .......... .......... .......... 66 AGCTAAAAGG AATTCTATAA AAATTTTGAA CTATGAATTA TTAAATTTAT ATTACATTTT 43221 .......... .......... .......... .......... .......... .......... 66 AAGCAATTTT AAATATGTAA TTTCTTTTTA AAAAGATATA TGTCCATCAA TTATTGAATC 43281 .......... .......... .......... .......... .......... .......... 66 ATCTCACATA AAATGGAACA CAGAAAATAT ATCATATCAA CAAAAGTTTA GCTAATTCTA 43341 .......... .......... .......... .......... .......... .......... 66 CTTTTCCTAT GGTGAGTGTA TTTTTGTGTC TGCTCTTTTT ATCTGTCTAA GATAATAACA 43401 .......... .......... .......... .......... .......... .......... 66 ATAACATACT TAATATAATC TTATAACAGA AGTCTCGAAA GTACAGAATG TACATATATT 43461 .......... .......... .......... .......... .......... .......... 66 TTATGTCTAT TTTGTAGAAA TCAAATCACT AAAAACAGTT TCATCTTTTA TCTATCTACC 43521 .......... .......... .......... .......... .......... .......... 66 TTCTACCATT TCCAAATTTA TACTTTCCAA TCTTGACAAG TATGTTAGAT AGACTTCTGT 43581 .......... .......... .......... .......... .......... .......... 66 AGTTCATGTT TGTAATTGAA TACATCGTGT AATTCAAGGT TTATACTCCC TCTAGTCCCA 43641 .......... .......... .......... .......... .......... .......... 66 ATTATCAATC GTTTGACAAG TTGAAATTAT TTATAAATAT TAGTATCCAT TTTAGAAATA 43701 .......... .......... .......... .......... .......... .......... 66 CAAGAAATGA TTTGTTAATC CTTTCGTTTC AATTTATGTG TCATAATTTG ATTTTGTACA 43761 .......... .......... .......... .......... .......... .......... 66 AACTTTAGAA AAAAAAGTAC ATACGTCTAC AAGTTTTGGT CTGTAACATC CCAAAACATA 43821 .......... .......... .......... .......... .......... .......... 66 TATGTAACTT TTATAAGATG TGTATACATT AAAAACTTCA GATTAAAAAT GTGTCATTAT 43881 .......... .......... .......... .......... .......... .......... 66 TTTGAAGCAT ATAAAAAAAA TTTGATACAT TTAGCTAAAA TTATATATTT ATTTCGAGAA 43941 .......... .......... .......... .......... .......... .......... 66 ATTCATTTAA CATAAATAAA TTCTTGTTTT ACAACCAACT TAATGATTTA GAATTCAAAA 44001 .......... .......... .......... .......... .......... .......... 66 GTTATATACT CTAAATCTTA ATTCCGCTTA TTGTTAATTA ATATAAAAAG TAGAGGGGAA 44061 .......... .......... .......... .......... .......... .......... 66 CAATCTTGGG TTAGCTTAAA ATAAATGGAA TTAGTTTCCT AAATTAGAAG GTATATAACG 44121 .......... .......... .......... .......... .......... .......... 66 TAAGCAGCCG CAAATTATTA TTTGCTCTCT TTTAAAAATA ACTTATCCAT CAATAGGGCA 44181 .......... .......... .......... .......... .......... .......... 66 AATTAGGTGA TTAGTGGAGC TAATTGGTAG GTCTAAATCC TGTCTCAACT CTTAGTGACA 44241 .......... .......... .......... .......... .......... .......... 66 TGTAAAGGTG GGTTCCACAT TTGGTGAAGG TGAATGCATG TGTGTCTGCT AAGTTTCCAA 44301 .......... .......... .......... .......... .......... .......... 66 TCGCCCACAA CATTTGGCCA ATGAAACCAC TGGTATTAAT TAATTACTCA TTAGATGGTG 44361 .......... .......... .......... .......... .......... .......... 66 GATCCTTCTT TAAGATAGAA TCTCATTAGC ACTAATTAAT ATTTTTTTTA AAAAAAAAAT 44421 .......... .......... .......... .......... .......... .......... 66 GTTTCTGGAG ATAGGATTTG GGGTGGGGGT TGAACGGAGT TAGATGCAAC TTGTGCAATT 44481 .......... .......... .......... .......... .......... .......... 66 TGACACTGCT GAGCTTATAA ACAATAATAT ACCGTAATGG TGAGAAAATT TAAAGAAGTT 44541 .......... .......... .......... .......... .......... .......... 66 ATAAGTTAAT ATATTAAACA AATTTGTTAC TTTTAGTTTT TTATAACTAT TATATTTAAA 44601 .......... .......... .......... .......... .......... .......... 66 CCAACTTGCA TGTATCTAAT TAATTACGTA TATGTAGTTA ATTATATAAA AGTCAAATTT 44661 .......... .......... .......... .......... .......... .......... 66 TATTTCTTTT TAGTCTAAGA GGTAAGGGAT TTGATCTTAA TGGTAAAAGT ATAACGTGTG 44721 .......... .......... .......... .......... .......... .......... 66 ATATTCAAAA TGGAGAAGAT CAGAAAGATG AATTCATTAT CCATTGAACT GTGAATCATG 44781 .......... .......... .......... .......... .......... .......... 66 CATCACTGAT CCTTGTTGTT TTTCGATTTT AATAAAAAAA TATTTGACCT TTGTATTAAT 44841 .......... .......... .......... .......... .......... .......... 66 ATAATTAATG GTGCCTAGAT CCTTAGAAGC AGGGAAGGGA GAAAGAATGA TACTACTTTT 44901 .......... .......... .......... .......... .......... .......... 66 GTAAATTAAT TTGATATGAG GTGGGGAGAC TGAAAGGCTA TGCTTTTATT GTCAACTATC 44961 .......... .......... .......... .......... .......... .......... 66 AGAAACTCTA CAACTCATTT TGATCATCTA AGTTGGTTAG ACTTTTTTAA TTTGTTATTA 45021 .......... .......... .......... .......... .......... .......... 66 CGATTCATTT AAAATGCACT ATTTTAAAAG ACCTGACATG CAATTTTCTA TATTTTTGAA 45081 .......... .......... .......... .......... .......... .......... 66 ATGTCCGATC GGTATAGAAA TAAATTCTCC TTTCAACTAA AAGGGTGGTT TAATCTATGA 45141 .......... .......... .......... .......... .......... .......... 66 TTTTTTGCCA ATAAGATATA TTGATTTGGA ATAGGACATA CAATGTGGAT GCTTTGACCT 45201 .......... .......... .......... .......... .......... .......... 66 CGAAAAAAGG CAATTTATTC TCTATTAATT TTTTAAAATA ATTATAATCT ACTCTACGTT 45261 .......... .......... .......... .......... .......... .......... 66 AGGTTTAGGT CTACTATTAG ACCTTTAATC GTTGTATTAG TTTCTTAAGT TAATGTGTGT 45321 .......... .......... .......... .......... .......... .......... 66 ATGAACTAAG TCATGATCAT TATGTCACAC AAACTTGAAT GGGTCAATAA AGTTGTGTTG 45381 .......... .......... .......... .......... .......... .......... 66 CGGTTCCTTT ATTCATTTTT TCTACTTATG GTAATTGATA TATGAGAGGT TGGAGTGTGC 45441 .......... .......... .......... .......... .......... .......... 66 TTCTTTGAGC ACTGAGTCTA TTCCATTAGT TATGTTGTAG TTTTCTTTTC TTCAACCCAA 45501 .......... .......... .......... .......... .......... .......... 66 ATAAAACAAT AAATAAATTA ATTAATTAAA CGAGCACAAC TTGGGACTTA TTATTCATTT 45561 .......... .......... .......... .......... .......... .......... 66 TATTTCATTT TATATGGTAT CATTTTTATT AAAAAATTTA TTCCATGAAT AATTACGATA 45621 .......... .......... .......... .......... .......... .......... 66 ACATATATGT ATAATATCAC AAATAGAATA TAGGGAGGAC AATATGTACT TCTTTACTAG 45681 .......... .......... .......... .......... .......... .......... 66 GTGATGAAAC TTTAGGCTAA GAAAAAATTA TTTGAAGTAA GATTGTCAAA AAATATTTGA 45741 .......... .......... .......... .......... .......... .......... 66 AACAGAATAT TGTATAATTA TGTAGTAATG TAATAGAAAG AATTGAAAAA CTTTCAGGGG 45801 .......... .......... .......... .......... .......... .......... 66 CCAAAAAGTA TTTTGTGGTC TCTGTAAATT ATACGAGTAG AGATATAAGT TTTGGAATTA 45861 .......... .......... .......... .......... .......... .......... 66 TTAATTGATT TTATAGAACA AGTTGTCACT TGGGCCCAAT GAGCAATATA GATATTAGAG 45921 .......... .......... .......... .......... .......... .......... 66 TATTATTTTG TTGTTTCCTT AATCATAATC TTAGTAAGAA GCTCCTTATT GGAGGAAGTG 45981 .......... .......... .......... .......... .......... .......... 66 AGCATTTCTT TTGTGGGGTC CAAACTTTCA AATATAGCAA GTTGACATTA TATAAAATAT 46041 .......... .......... .......... .......... .......... .......... 66 AAAATTCTAG TAAAAGTAGC AACTAGCCAA TAAAATAATG AATAAAGGAA AGGGAAGGAG 46101 .......... .......... .......... .......... .......... .......... 66 TTTTGTCCCT TTATTTAATT GATGGTGATT GTGCCTACGA TTCTTTGAAT CCATTTTTTA 46161 .......... .......... .......... .......... .......... .......... 66 CTTATTTTGA GGTCAAGATG CATTCACCAA ACAGCTCCTA AAATTCCATG ACTGGTCAGT 46221 .......... .......... .......... .......... .......... .......... 66 TATCACGTGC ATGGGTATTT ACTTGACCCG TTTATTCCCA CTTGCTCTAT CCATTATTAT 46281 .......... .......... .......... .......... .......... .......... 66 TATTATTATT ATCTTAGCCG CCACCTAAAA CCAGCCCAAT GTTTTTGAGT GCTTTACTAG 46341 .......... .......... .......... .......... .......... .......... 66 TTCTAAGATA TTTTCTGAAA GTTTTACAGT CGACTGTTAG CAGATGATCC TGTTTTTATT 46401 .......... .......... .......... .......... .......... .......... 66 TGTTGGTGTA ATTTATGATT CTTCATATAA GAAATGCTTT GATTATGATC TTAAATTTTG 46461 .......... .......... .......... .......... .......... .......... 66 TAGACAATAA ACAAACTTCA ATGTTTTGTT AGTTTCAAAG GCTTATATTT TCACAACTTG 46521 .......... .......... .......... .......... .......... .......... 66 TGAAAATAGT GATTAAATTT AAATGATGAC TTATTTTAAA AAATTTTTAA ATCAAGGACT 46581 .......... .......... .......... .......... .......... .......... 66 TTCTCATTTA CTATTCATAT TTTGTTTTGT CTAGTGGTTA ACGAAGGAGG TTTAAGCATT 46641 .......... .......... .......... .......... .......... .......... 66 ATAAGGTCCT AGGTTCAGTT CCTAACAAAG AGAAAACACT AGGTGATATT TTCCCTCATA 46701 .......... .......... .......... .......... .......... .......... 66 TATCCCATGA AATGGAGCTT TAGTAGATCA GTTAGTTTTG AGTTGAGGGT CTATCGAAAA 46761 .......... .......... .......... .......... .......... .......... 66 CAATCTCTCT ACCCCACAAG GTAGGATAAG GTGTGTGTAT CTTATTTTCG TTGGTTTTAT 46821 .......... .......... .......... .......... .......... .......... 66 CTTTAGTTTG AGTAGTAATA TTCATACCTT GTCAAACAAA GACTTCAAAT TAGATATCAA 46881 .......... .......... .......... .......... .......... .......... 66 ATGGAAGTCT AACAATTTGA TGTGGAAAAG AGGATCTCTT TTATGTTATG TCTGTAATAT 46941 .......... .......... .......... .......... .......... .......... 66 ACTTTAATTT TGTCAAAGAA GACCTTAATA TATAGAGCCA AAAGAGACCA AATACTTTTC 47001 .......... .......... .......... .......... .......... .......... 66 CATGGAGACT ACAAGGGTCA CACCAGAACT ATCAGCTTTT GAGATGACAT TTTTGAATCA 47061 .......... .......... .......... .......... .......... .......... 66 AACTCACGAA AAGATTCATA TCTAATATGT TGTAAAGGTT TTAATTTGGT AAAAAGAACT 47121 .......... .......... .......... .......... .......... .......... 66 CGTTACCATA ACTTGTAGTA TAATTCAAGT TTGACTTGAC GTTAGGATTT TCAGTTTCAA 47181 |||||| .......... .......... .......... .......... .......... ....TTTCAA 72 TGGGGAGAGG AAGCTATAAC CCAAAAGGCG GTGGAGATAG TGGCCGGGGA ATAACAAGGC 47241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGAGAGG AAGCTATAAC CCAAAAGGCG GTGGAGATAG TGGCCGGGGA ATAACAAGGC 132 TGAACTCTCA GCTCAGCTTC ACAACGCAAG AAGCTCTTTC TCAAATAGCA GAGGAAAATG 47301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCTCA GCTCAGCTTC ACAACGCAAG AAGCTCTTTC TCAAATAGCA GAGGAAAATG 192 AGGATATTGA AGGGACCAGT ATAGCCAATG GCCACAGAAA GTCAACACAT TCTTATGCCA 47361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATTGA AGGGACCAGT ATAGCCAATG GCCACAGAAA GTCAACACAT TCTTATGCCA 252 GTGCAAGTAG TTTCGCGATG GGTTCTTGGG AAGATAACAA CTCTATAATG TTCTCTGTCA 47421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAAGTAG TTTCGCGATG GGTTCTTGGG AAGATAACAA CTCTATAATG TTCTCTGTCA 312 CACCTAGCAA ACGATCCAAG CAGATTAGCA ATGACATTGT CAATGGGCTC GATGACGGGG 47481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCTAGCAA ACGATCCAAG CAGATTAGCA ATGACATTGT CAATGGGCTC GATGACGGGG 372 AAACTCAGGT AATATAACTG TAACTTTGTG AAAGTATGTT TCTCTGATAA AATTGTATTT 47541 |||||||| AAACTCAG.. .......... .......... .......... .......... .......... 380 TTAGTTGAGT GTTTAAGGGT CATGTTTTCT TTATCCTGAA TTCTAGAGTT GTGCATGTGA 47601 .......... .......... .......... .......... .......... .......... 380 TATGCCTAAC GTTAACAATA TTTATGTGAA AAGTGAGATG TAATTTTAAT GATGTTAGCC 47661 .......... .......... .......... .......... .......... .......... 380 TTCTAGATGA AAAAATGTCA TGTGCTTTGA TTTGGTGATC TTACAACTGA TTCAAAATCT 47721 .......... .......... .......... .......... .......... .......... 380 GTTTTTTCTC CTTCAACACG CTATTTGAAA TCTTTCAAAA AGTTGATGAT TTGGTTTTTG 47781 .......... .......... .......... .......... .......... .......... 380 CTTGCATTCT TTTGTCTCTA ATTCCCTACC TTTCTTCTTT CTTCCAGCTA ATATGAACTT 47841 ||| |||||||||| .......... .......... .......... .......... .......CTA ATATGAACTT 393 GAAGGTCACT ATCAGAAAAC ACATAAACCT TCACCGTTTG ACATCTGTGT TTTCAACATG 47901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTCACT ATCAGAAAAC ACATAAACCT TCACCGTTTG ACATCTGTGT TTTCAACATG 453 TAAACGGCGA TAGATATACT TCCTTTACAT TTTTCCCCTT AACAACCTTA CAACTACATT 47961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACGGCGA TAGATATACT TCCTTTACAT TTTTCCCCTT AACAACCTTA CAACTACATT 513 CTGTGTATGT GTTTCTTTTC TTTCTGCAGA AGTATGTAAA ATAAAATAGA CAAAATAATC 48021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGTATGT GTTTCTTTTC TTTCTGCAGA AGTATGTAAA ATAAAATAGA CAAAATAATC 573 CATGTTGGCA TACTCAATCA TGTTTCTCGT GTGTAACTCA CACAAAAATT GATGAAAACT 48081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTTGGCA TACTCAATCA TGTTTCTCGT GTGTAACTCA CACAAAAATT GATGAAAACT 633 GCATTTTTAT TACTTGTGGG AGGATGAACT GATGTTTTTC GATTTTTGAA 48131 |||||||||| |||||||||| |||||||||| |||||||||| | || GCATTTTTAT TACTTGTGGG AGGATGAACT GATGTTTTTC AAAAAAAAAA 683 hqPGS_C09HBa0109D11.1+_SGN-E302507- (42142 42207,47176 47489,47829 48131) ******************************************************************************** EST sequence 29 +strand 408 n (File: SGN-E312877+) 1 CCTCACCCCA CCCACCCACC TCTCTCTCTA TTAACTTCTC AACCTCCAAA TCTTAACAAT 61 CCAATTCGAA CAAATTATCA AATGTATCCA TCATCAACAT CTTCTTCATC ACAAGGTTCA 121 ATGAGCCACA CCAGCACCAC CGCTGGCGGC GCCGGCGGTG GTCTCACTCG CTACGGTTCA 181 GCTCCGGGAT CATTTTTAAC TACAGCAGTT GAAGCCGTCG TTAACGGTAA TCACGAGTTC 241 GCTTCTCACG GATCTCATCA CTCACACCTT GGTCCTTCAC GGTTTTTTCA GTCCAATCTA 301 GCATCTACTT CGTTAAATTC CGAATCTACA AGTAAAGCGA AGGAACAATC GAATTTACAG 361 AGGTCAATTG GTTTCAATGA CTTAACAATC GGCGGCGGAA GCGGCGCT Predicted gene structure (within gDNA segment 41097 to 42714): Exon 1 41697 42104 ( 408 n); cDNA 1 408 ( 408 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E312877+ 1.000 408 1.000 C PGS_C09HBa0109D11.1+_SGN-E312877+ (41697 42104) Alignment (genomic DNA sequence = upper lines): CCTCACCCCA CCCACCCACC TCTCTCTCTA TTAACTTCTC AACCTCCAAA TCTTAACAAT 41756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCACCCCA CCCACCCACC TCTCTCTCTA TTAACTTCTC AACCTCCAAA TCTTAACAAT 60 CCAATTCGAA CAAATTATCA AATGTATCCA TCATCAACAT CTTCTTCATC ACAAGGTTCA 41816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTCGAA CAAATTATCA AATGTATCCA TCATCAACAT CTTCTTCATC ACAAGGTTCA 120 ATGAGCCACA CCAGCACCAC CGCTGGCGGC GCCGGCGGTG GTCTCACTCG CTACGGTTCA 41876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGCCACA CCAGCACCAC CGCTGGCGGC GCCGGCGGTG GTCTCACTCG CTACGGTTCA 180 GCTCCGGGAT CATTTTTAAC TACAGCAGTT GAAGCCGTCG TTAACGGTAA TCACGAGTTC 41936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGGGAT CATTTTTAAC TACAGCAGTT GAAGCCGTCG TTAACGGTAA TCACGAGTTC 240 GCTTCTCACG GATCTCATCA CTCACACCTT GGTCCTTCAC GGTTTTTTCA GTCCAATCTA 41996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCTCACG GATCTCATCA CTCACACCTT GGTCCTTCAC GGTTTTTTCA GTCCAATCTA 300 GCATCTACTT CGTTAAATTC CGAATCTACA AGTAAAGCGA AGGAACAATC GAATTTACAG 42056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCTACTT CGTTAAATTC CGAATCTACA AGTAAAGCGA AGGAACAATC GAATTTACAG 360 AGGTCAATTG GTTTCAATGA CTTAACAATC GGCGGCGGAA GCGGCGCT 42104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGGTCAATTG GTTTCAATGA CTTAACAATC GGCGGCGGAA GCGGCGCT 408 hqPGS_C09HBa0109D11.1+_SGN-E312877+ (41697 42104) ******************************************************************************** EST sequence 51 +strand 669 n (File: SGN-E368037+) 1 GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 61 CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 121 TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 181 AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 241 TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 301 TCAGTTTCAG TTTGGCTTGT CTCAGACAGC TCTAGAAATA GCATCTATGG ATAGATTGCT 361 GCACATCCCC GAGGATTCTG TTCCTTGCAA AATTCGTGCC AAGCGTGGTT GTGCTACTCA 421 TCCTCGCAGC ATTGCAGAAA GGGAGAGAAG AACCAGAATT AGTGGGAAAC TAAAGAAGTT 481 ACAAGATCTT GTTCCAAACA TGGACAAGCA AACGAGCTAT GCTGACATGC TGGATCTAGC 541 AGTGCAGCAT ATTCGAACCC TTCAAGATCA GGTTCAGAAT CTGAATACAG AACTTGAAAA 601 CTGCAAATGT GGATGTAGGA AATCAAGTCA ATAACAAAAT GGGAGGAAGC ACTTTAGCTG 661 AAGATTGAC Predicted gene structure (within gDNA segment 46586 to 49921): Exon 1 47186 47489 ( 304 n); cDNA 1 304 ( 304 n); score: 1.000 Intron 1 47490 48141 ( 652 n); Pd: 1.000 (s: 1.00), Pa: 0.937 (s: 1.00) Exon 2 48142 48279 ( 138 n); cDNA 305 442 ( 138 n); score: 1.000 Intron 2 48280 48624 ( 345 n); Pd: 0.990 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 48625 48690 ( 66 n); cDNA 443 508 ( 66 n); score: 1.000 Intron 3 48691 48820 ( 130 n); Pd: 0.997 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 48821 48889 ( 69 n); cDNA 509 577 ( 69 n); score: 1.000 Intron 4 48890 49219 ( 330 n); Pd: 0.994 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 49220 49311 ( 92 n); cDNA 578 669 ( 92 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E368037+ 1.000 669 1.000 C PGS_C09HBa0109D11.1+_SGN-E368037+ (47186 47489,48142 48279,48625 48690,48821 48889,49220 49311) Alignment (genomic DNA sequence = upper lines): GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 47245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 60 CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 47305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 120 TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 47365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 180 AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 47425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 240 TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 47485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 300 TCAGGTAATA TAACTGTAAC TTTGTGAAAG TATGTTTCTC TGATAAAATT GTATTTTTAG 47545 |||| TCAG...... .......... .......... .......... .......... .......... 304 TTGAGTGTTT AAGGGTCATG TTTTCTTTAT CCTGAATTCT AGAGTTGTGC ATGTGATATG 47605 .......... .......... .......... .......... .......... .......... 304 CCTAACGTTA ACAATATTTA TGTGAAAAGT GAGATGTAAT TTTAATGATG TTAGCCTTCT 47665 .......... .......... .......... .......... .......... .......... 304 AGATGAAAAA ATGTCATGTG CTTTGATTTG GTGATCTTAC AACTGATTCA AAATCTGTTT 47725 .......... .......... .......... .......... .......... .......... 304 TTTCTCCTTC AACACGCTAT TTGAAATCTT TCAAAAAGTT GATGATTTGG TTTTTGCTTG 47785 .......... .......... .......... .......... .......... .......... 304 CATTCTTTTG TCTCTAATTC CCTACCTTTC TTCTTTCTTC CAGCTAATAT GAACTTGAAG 47845 .......... .......... .......... .......... .......... .......... 304 GTCACTATCA GAAAACACAT AAACCTTCAC CGTTTGACAT CTGTGTTTTC AACATGTAAA 47905 .......... .......... .......... .......... .......... .......... 304 CGGCGATAGA TATACTTCCT TTACATTTTT CCCCTTAACA ACCTTACAAC TACATTCTGT 47965 .......... .......... .......... .......... .......... .......... 304 GTATGTGTTT CTTTTCTTTC TGCAGAAGTA TGTAAAATAA AATAGACAAA ATAATCCATG 48025 .......... .......... .......... .......... .......... .......... 304 TTGGCATACT CAATCATGTT TCTCGTGTGT AACTCACACA AAAATTGATG AAAACTGCAT 48085 .......... .......... .......... .......... .......... .......... 304 TTTTATTACT TGTGGGAGGA TGAACTGATG TTTTTCGATT TTTGAACCAT TTTCAGTTTC 48145 |||| .......... .......... .......... .......... .......... ......TTTC 308 AGTTTGGCTT GTCTCAGACA GCTCTAGAAA TAGCATCTAT GGATAGATTG CTGCACATCC 48205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGGCTT GTCTCAGACA GCTCTAGAAA TAGCATCTAT GGATAGATTG CTGCACATCC 368 CCGAGGATTC TGTTCCTTGC AAAATTCGTG CCAAGCGTGG TTGTGCTACT CATCCTCGCA 48265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGGATTC TGTTCCTTGC AAAATTCGTG CCAAGCGTGG TTGTGCTACT CATCCTCGCA 428 GCATTGCAGA AAGGGTGATC TTCATATTTC TTAAGCCATT CCTTTACTTG GCCCTTATAA 48325 |||||||||| |||| GCATTGCAGA AAGG...... .......... .......... .......... .......... 442 TGAACAAAAA AATAAAAATC CAATTGAACT TTATCAATTT ATTTTTCCCC TGCTTCATTT 48385 .......... .......... .......... .......... .......... .......... 442 CATTTGATAT GGCTTCGATT GAGAATGAAT TTCAAGATAC TATCTGAAGC TGATGAAACT 48445 .......... .......... .......... .......... .......... .......... 442 CTTCCAGCCA CTGATTTTAA ATGCCAACTT TGCTATTATG TAACAATAGA TTTAATTGTC 48505 .......... .......... .......... .......... .......... .......... 442 AACATGTAGT AGTTGTGGCA TTTGAAATAC TTTTCCTCAA AATTTGGATC ATCATAGCTA 48565 .......... .......... .......... .......... .......... .......... 442 TGTTTTGCTT TTACTAATAC ACAATAATGA ACGTTGTATT CTTTTCTCAT CTTATGCAGG 48625 | .......... .......... .......... .......... .......... .........G 443 AGAGAAGAAC CAGAATTAGT GGGAAACTAA AGAAGTTACA AGATCTTGTT CCAAACATGG 48685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAGAAC CAGAATTAGT GGGAAACTAA AGAAGTTACA AGATCTTGTT CCAAACATGG 503 ACAAGGTATA GTTTGCTTCC ACTCCACAAT ATTTTCTCAA TTGGAGCTTA TTGGAACATG 48745 ||||| ACAAG..... .......... .......... .......... .......... .......... 508 TTTTAGCTGT AAATTTTGTC GCAGCAAACG AGCTACACTC CAATATTAAC AACATTTTCT 48805 .......... .......... .......... .......... .......... .......... 508 TGTTTGTTTT CGCAGCAAAC GAGCTATGCT GACATGCTGG ATCTAGCAGT GCAGCATATT 48865 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CAAAC GAGCTATGCT GACATGCTGG ATCTAGCAGT GCAGCATATT 553 CGAACCCTTC AAGATCAGGT TCAGGTGAGT GATCAAAATG ATCAACCTTA CTGCTTTGCA 48925 |||||||||| |||||||||| |||| CGAACCCTTC AAGATCAGGT TCAG...... .......... .......... .......... 577 GCTTTACCTA AATTACTTAT ACTCTATGTT CCTTACACTC TTCAAAGAAA CAGCCAGTGT 48985 .......... .......... .......... .......... .......... .......... 577 GTTGGATTAG ATCCTCCAAA AGCTATTAGT ACAACAATTT TGGCCCGAGC AACATATCTT 49045 .......... .......... .......... .......... .......... .......... 577 GTATTCTCAC ATGAGTTTAC ACCAAACCGA ACAATTTAAC CTTAATGTAT TTGGGATAGA 49105 .......... .......... .......... .......... .......... .......... 577 TGATGTCTAA TATGTTTTGC AAATAAAAAA TGATAAATTT TCTAGCCCCA CCTTTATAGC 49165 .......... .......... .......... .......... .......... .......... 577 TGTGTGATTG AAATAGTCGA AATATAATTT TCACGTTTTC TTATTCTTAT GCAGAATCTG 49225 |||||| .......... .......... .......... .......... .......... ....AATCTG 583 AATACAGAAC TTGAAAACTG CAAATGTGGA TGTAGGAAAT CAAGTCAATA ACAAAATGGG 49285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACAGAAC TTGAAAACTG CAAATGTGGA TGTAGGAAAT CAAGTCAATA ACAAAATGGG 643 AGGAAGCACT TTAGCTGAAG ATTGAC 49311 |||||||||| |||||||||| |||||| AGGAAGCACT TTAGCTGAAG ATTGAC 669 hqPGS_C09HBa0109D11.1+_SGN-E368037+ (47186 47489,48142 48279,48625 48690,48821 48889,49220 49311) ******************************************************************************** EST sequence 61 +strand 353 n (File: SGN-E241002+) 1 GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 61 CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 121 TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 181 AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 241 TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 301 TCAGTTTCAG TTTGGCTTGT CTCAAACAGC TCTAGAAATA GCATCTATGG ATA Predicted gene structure (within gDNA segment 46586 to 48800): Exon 1 47186 47489 ( 304 n); cDNA 1 304 ( 304 n); score: 1.000 Intron 1 47490 48141 ( 652 n); Pd: 1.000 (s: 1.00), Pa: 0.937 (s: 0.98) Exon 2 48142 48190 ( 49 n); cDNA 305 353 ( 49 n); score: 0.980 MATCH C09HBa0109D11.1+ SGN-E241002+ 1.000 353 1.000 C PGS_C09HBa0109D11.1+_SGN-E241002+ (47186 47489,48142 48190) Alignment (genomic DNA sequence = upper lines): GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 47245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGAAGC TATAACCCAA AAGGCGGTGG AGATAGTGGC CGGGGAATAA CAAGGCTGAA 60 CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 47305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGCTC AGCTTCACAA CGCAAGAAGC TCTTTCTCAA ATAGCAGAGG AAAATGAGGA 120 TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 47365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAAGGG ACCAGTATAG CCAATGGCCA CAGAAAGTCA ACACATTCTT ATGCCAGTGC 180 AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 47425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAGTTTC GCGATGGGTT CTTGGGAAGA TAACAACTCT ATAATGTTCT CTGTCACACC 240 TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 47485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAACGA TCCAAGCAGA TTAGCAATGA CATTGTCAAT GGGCTCGATG ACGGGGAAAC 300 TCAGGTAATA TAACTGTAAC TTTGTGAAAG TATGTTTCTC TGATAAAATT GTATTTTTAG 47545 |||| TCAG...... .......... .......... .......... .......... .......... 304 TTGAGTGTTT AAGGGTCATG TTTTCTTTAT CCTGAATTCT AGAGTTGTGC ATGTGATATG 47605 .......... .......... .......... .......... .......... .......... 304 CCTAACGTTA ACAATATTTA TGTGAAAAGT GAGATGTAAT TTTAATGATG TTAGCCTTCT 47665 .......... .......... .......... .......... .......... .......... 304 AGATGAAAAA ATGTCATGTG CTTTGATTTG GTGATCTTAC AACTGATTCA AAATCTGTTT 47725 .......... .......... .......... .......... .......... .......... 304 TTTCTCCTTC AACACGCTAT TTGAAATCTT TCAAAAAGTT GATGATTTGG TTTTTGCTTG 47785 .......... .......... .......... .......... .......... .......... 304 CATTCTTTTG TCTCTAATTC CCTACCTTTC TTCTTTCTTC CAGCTAATAT GAACTTGAAG 47845 .......... .......... .......... .......... .......... .......... 304 GTCACTATCA GAAAACACAT AAACCTTCAC CGTTTGACAT CTGTGTTTTC AACATGTAAA 47905 .......... .......... .......... .......... .......... .......... 304 CGGCGATAGA TATACTTCCT TTACATTTTT CCCCTTAACA ACCTTACAAC TACATTCTGT 47965 .......... .......... .......... .......... .......... .......... 304 GTATGTGTTT CTTTTCTTTC TGCAGAAGTA TGTAAAATAA AATAGACAAA ATAATCCATG 48025 .......... .......... .......... .......... .......... .......... 304 TTGGCATACT CAATCATGTT TCTCGTGTGT AACTCACACA AAAATTGATG AAAACTGCAT 48085 .......... .......... .......... .......... .......... .......... 304 TTTTATTACT TGTGGGAGGA TGAACTGATG TTTTTCGATT TTTGAACCAT TTTCAGTTTC 48145 |||| .......... .......... .......... .......... .......... ......TTTC 308 AGTTTGGCTT GTCTCAGACA GCTCTAGAAA TAGCATCTAT GGATA 48190 |||||||||| |||||| ||| |||||||||| |||||||||| ||||| AGTTTGGCTT GTCTCAAACA GCTCTAGAAA TAGCATCTAT GGATA 353 hqPGS_C09HBa0109D11.1+_SGN-E241002+ (47186 47489,48142 48190) ******************************************************************************** EST sequence 20 +strand 508 n (File: SGN-E228508+) 1 AGTGGCCGGG GAATAACAAG GCTGAACTCT CAGCTCAGCT TCACAACGCA AGAAGCTCTT 61 TCTCAAATAG CAGAGGAAAA TGAGGATATT GAAGGGACCA GTATAGCCAA TGGCCACAGA 121 AAGTCAACAC ATTCTTATGC CAGTGCAAGT AGTTTCGCGA TGGGTTCTTG GGAAGATAAC 181 AACTCTATAA TGTTCTCTGT CACACCTAGC AAACGATCCA AGCAGATTAG CAATGACATT 241 GTCAATGGGC TCGATGACGG GGAAACTCAG TTTCAGTTTG GCTTGTCTCA GACAGCTCTA 301 GAAATAGCAT CTATGGATAG ATTGCTGCAC ATCCCCGAGG ATTCTGTTCC TTTGCAAAAT 361 TCGTGCCAAG CGTGGTTGTG CTACTCATCC TCGCAGCATT GCAGAAAGGG AGAGAAGAAC 421 CAGAATTAGT GGGAAACTAA AGAAGTTACA AGATCTTGTT CCAAACATGG ACAAGCAAAC 481 GAGCTATGCT GACATGCTGG ATCTAGCA Predicted gene structure (within gDNA segment 46620 to 49463): Exon 1 47220 47489 ( 270 n); cDNA 1 270 ( 270 n); score: 1.000 Intron 1 47490 48141 ( 652 n); Pd: 1.000 (s: 1.00), Pa: 0.937 (s: 1.00) Exon 2 48142 48279 ( 138 n); cDNA 271 409 ( 139 n); score: 0.982 Intron 2 48280 48624 ( 345 n); Pd: 0.990 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 48625 48690 ( 66 n); cDNA 410 475 ( 66 n); score: 1.000 Intron 3 48691 48820 ( 130 n); Pd: 0.997 (s: 1.00), Pa: 0.984 (s: 0) Exon 4 48821 48853 ( 33 n); cDNA 476 508 ( 33 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E228508+ 0.995 507 0.998 C PGS_C09HBa0109D11.1+_SGN-E228508+ (47220 47489,48142 48279,48625 48690,48821 48853) Alignment (genomic DNA sequence = upper lines): AGTGGCCGGG GAATAACAAG GCTGAACTCT CAGCTCAGCT TCACAACGCA AGAAGCTCTT 47279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGCCGGG GAATAACAAG GCTGAACTCT CAGCTCAGCT TCACAACGCA AGAAGCTCTT 60 TCTCAAATAG CAGAGGAAAA TGAGGATATT GAAGGGACCA GTATAGCCAA TGGCCACAGA 47339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAAATAG CAGAGGAAAA TGAGGATATT GAAGGGACCA GTATAGCCAA TGGCCACAGA 120 AAGTCAACAC ATTCTTATGC CAGTGCAAGT AGTTTCGCGA TGGGTTCTTG GGAAGATAAC 47399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCAACAC ATTCTTATGC CAGTGCAAGT AGTTTCGCGA TGGGTTCTTG GGAAGATAAC 180 AACTCTATAA TGTTCTCTGT CACACCTAGC AAACGATCCA AGCAGATTAG CAATGACATT 47459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCTATAA TGTTCTCTGT CACACCTAGC AAACGATCCA AGCAGATTAG CAATGACATT 240 GTCAATGGGC TCGATGACGG GGAAACTCAG GTAATATAAC TGTAACTTTG TGAAAGTATG 47519 |||||||||| |||||||||| |||||||||| GTCAATGGGC TCGATGACGG GGAAACTCAG .......... .......... .......... 270 TTTCTCTGAT AAAATTGTAT TTTTAGTTGA GTGTTTAAGG GTCATGTTTT CTTTATCCTG 47579 .......... .......... .......... .......... .......... .......... 270 AATTCTAGAG TTGTGCATGT GATATGCCTA ACGTTAACAA TATTTATGTG AAAAGTGAGA 47639 .......... .......... .......... .......... .......... .......... 270 TGTAATTTTA ATGATGTTAG CCTTCTAGAT GAAAAAATGT CATGTGCTTT GATTTGGTGA 47699 .......... .......... .......... .......... .......... .......... 270 TCTTACAACT GATTCAAAAT CTGTTTTTTC TCCTTCAACA CGCTATTTGA AATCTTTCAA 47759 .......... .......... .......... .......... .......... .......... 270 AAAGTTGATG ATTTGGTTTT TGCTTGCATT CTTTTGTCTC TAATTCCCTA CCTTTCTTCT 47819 .......... .......... .......... .......... .......... .......... 270 TTCTTCCAGC TAATATGAAC TTGAAGGTCA CTATCAGAAA ACACATAAAC CTTCACCGTT 47879 .......... .......... .......... .......... .......... .......... 270 TGACATCTGT GTTTTCAACA TGTAAACGGC GATAGATATA CTTCCTTTAC ATTTTTCCCC 47939 .......... .......... .......... .......... .......... .......... 270 TTAACAACCT TACAACTACA TTCTGTGTAT GTGTTTCTTT TCTTTCTGCA GAAGTATGTA 47999 .......... .......... .......... .......... .......... .......... 270 AAATAAAATA GACAAAATAA TCCATGTTGG CATACTCAAT CATGTTTCTC GTGTGTAACT 48059 .......... .......... .......... .......... .......... .......... 270 CACACAAAAA TTGATGAAAA CTGCATTTTT ATTACTTGTG GGAGGATGAA CTGATGTTTT 48119 .......... .......... .......... .......... .......... .......... 270 TCGATTTTTG AACCATTTTC AGTTTCAGTT TGGCTTGTCT CAGACAGCTC TAGAAATAGC 48179 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTTCAGTT TGGCTTGTCT CAGACAGCTC TAGAAATAGC 308 ATCTATGGAT AGATTGCTGC ACATCCCCGA GGATTCTGTT CC-TTGCAAA ATTCGTGCCA 48238 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ATCTATGGAT AGATTGCTGC ACATCCCCGA GGATTCTGTT CCTTTGCAAA ATTCGTGCCA 368 AGCGTGGTTG TGCTACTCAT CCTCGCAGCA TTGCAGAAAG GGTGATCTTC ATATTTCTTA 48298 |||||||||| |||||||||| |||||||||| |||||||||| | AGCGTGGTTG TGCTACTCAT CCTCGCAGCA TTGCAGAAAG G......... .......... 409 AGCCATTCCT TTACTTGGCC CTTATAATGA ACAAAAAAAT AAAAATCCAA TTGAACTTTA 48358 .......... .......... .......... .......... .......... .......... 409 TCAATTTATT TTTCCCCTGC TTCATTTCAT TTGATATGGC TTCGATTGAG AATGAATTTC 48418 .......... .......... .......... .......... .......... .......... 409 AAGATACTAT CTGAAGCTGA TGAAACTCTT CCAGCCACTG ATTTTAAATG CCAACTTTGC 48478 .......... .......... .......... .......... .......... .......... 409 TATTATGTAA CAATAGATTT AATTGTCAAC ATGTAGTAGT TGTGGCATTT GAAATACTTT 48538 .......... .......... .......... .......... .......... .......... 409 TCCTCAAAAT TTGGATCATC ATAGCTATGT TTTGCTTTTA CTAATACACA ATAATGAACG 48598 .......... .......... .......... .......... .......... .......... 409 TTGTATTCTT TTCTCATCTT ATGCAGGAGA GAAGAACCAG AATTAGTGGG AAACTAAAGA 48658 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAGA GAAGAACCAG AATTAGTGGG AAACTAAAGA 443 AGTTACAAGA TCTTGTTCCA AACATGGACA AGGTATAGTT TGCTTCCACT CCACAATATT 48718 |||||||||| |||||||||| |||||||||| || AGTTACAAGA TCTTGTTCCA AACATGGACA AG........ .......... .......... 475 TTCTCAATTG GAGCTTATTG GAACATGTTT TAGCTGTAAA TTTTGTCGCA GCAAACGAGC 48778 .......... .......... .......... .......... .......... .......... 475 TACACTCCAA TATTAACAAC ATTTTCTTGT TTGTTTTCGC AGCAAACGAG CTATGCTGAC 48838 |||||||| |||||||||| .......... .......... .......... .......... ..CAAACGAG CTATGCTGAC 493 ATGCTGGATC TAGCA 48853 |||||||||| ||||| ATGCTGGATC TAGCA 508 hqPGS_C09HBa0109D11.1+_SGN-E228508+ (47220 47489,48142 48279,48625 48690,48821 48853) ******************************************************************************** EST sequence 120 -strand 680 n (File: SGN-E368036-) 1 GTCAATGGGC TCGATGACGG GGAAACTCAG TTTCAGTTTG GCTTTGTCTC AGACAGCTCT 61 AGAAATAGCA TCTATGGATA GATTGCTGCA CATCCCCGAG GATTCTGTTC CTTGCAAAAT 121 TCGTGCCAAG CGTGGTTGTG CTACTCATCC TCGCAGCATT GCAGAAAGGG AGAGAAGAAC 181 CAGAATTAGT GGGAAACTAA AGAAGTTACA AGATCTTGTT CCAAACATGG ACAAGCAAAC 241 GAGCTATGCT GACATGCTGG ATCTAGCAGT GCAGCATATT CGAACCCTTC AAGATCAGGT 301 TCAGAATCTG AATACAGAAC TTGAAAACTG CAAATGTGGA TGTAGGAAAT CAAGTCAATA 361 ACAAAATGGG AGGAAGCACT TTAGCTGAAG ATTGACTTAA AAGGATTTTT GTCACCATTA 421 TTTTGCTTCT TAGAAACTCA AATTTGTACA TATGGAAGTA AATTTCATAC TAGTTTTTTA 481 AAGCTAAAAA GTGAACTCTC TTTGTTTTTT TTTCTTTTCC CTTTTCCAGT TAGAAGACTA 541 CGTATATGAT TGTTTTGGAT TATTTCTAGT TTTCTTTTTT CATCTAACAT TTACATTTTT 601 AATTTATTTT TGAGTTTATT TTGCTTGAAG ATCATAAAAG CTAATTGATG ATGTTGTACA 661 AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 46850 to 50366): Exon 1 47460 47489 ( 30 n); cDNA 1 30 ( 30 n); score: 1.000 Intron 1 47490 48141 ( 652 n); Pd: 1.000 (s: 0), Pa: 0.937 (s: 0.95) Exon 2 48142 48279 ( 138 n); cDNA 31 169 ( 139 n); score: 0.982 Intron 2 48280 48624 ( 345 n); Pd: 0.990 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 48625 48690 ( 66 n); cDNA 170 235 ( 66 n); score: 1.000 Intron 3 48691 48820 ( 130 n); Pd: 0.997 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 48821 48889 ( 69 n); cDNA 236 304 ( 69 n); score: 1.000 Intron 4 48890 49219 ( 330 n); Pd: 0.994 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 49220 49576 ( 357 n); cDNA 305 661 ( 357 n); score: 1.000 PPA cDNA 662 680 MATCH C09HBa0109D11.1+ SGN-E368036- 0.996 660 0.971 C PGS_C09HBa0109D11.1+_SGN-E368036- (47460 47489,48142 48279,48625 48690,48821 48889,49220 49576) Alignment (genomic DNA sequence = upper lines): GTCAATGGGC TCGATGACGG GGAAACTCAG GTAATATAAC TGTAACTTTG TGAAAGTATG 47519 |||||||||| |||||||||| |||||||||| GTCAATGGGC TCGATGACGG GGAAACTCAG .......... .......... .......... 30 TTTCTCTGAT AAAATTGTAT TTTTAGTTGA GTGTTTAAGG GTCATGTTTT CTTTATCCTG 47579 .......... .......... .......... .......... .......... .......... 30 AATTCTAGAG TTGTGCATGT GATATGCCTA ACGTTAACAA TATTTATGTG AAAAGTGAGA 47639 .......... .......... .......... .......... .......... .......... 30 TGTAATTTTA ATGATGTTAG CCTTCTAGAT GAAAAAATGT CATGTGCTTT GATTTGGTGA 47699 .......... .......... .......... .......... .......... .......... 30 TCTTACAACT GATTCAAAAT CTGTTTTTTC TCCTTCAACA CGCTATTTGA AATCTTTCAA 47759 .......... .......... .......... .......... .......... .......... 30 AAAGTTGATG ATTTGGTTTT TGCTTGCATT CTTTTGTCTC TAATTCCCTA CCTTTCTTCT 47819 .......... .......... .......... .......... .......... .......... 30 TTCTTCCAGC TAATATGAAC TTGAAGGTCA CTATCAGAAA ACACATAAAC CTTCACCGTT 47879 .......... .......... .......... .......... .......... .......... 30 TGACATCTGT GTTTTCAACA TGTAAACGGC GATAGATATA CTTCCTTTAC ATTTTTCCCC 47939 .......... .......... .......... .......... .......... .......... 30 TTAACAACCT TACAACTACA TTCTGTGTAT GTGTTTCTTT TCTTTCTGCA GAAGTATGTA 47999 .......... .......... .......... .......... .......... .......... 30 AAATAAAATA GACAAAATAA TCCATGTTGG CATACTCAAT CATGTTTCTC GTGTGTAACT 48059 .......... .......... .......... .......... .......... .......... 30 CACACAAAAA TTGATGAAAA CTGCATTTTT ATTACTTGTG GGAGGATGAA CTGATGTTTT 48119 .......... .......... .......... .......... .......... .......... 30 TCGATTTTTG AACCATTTTC AGTTTCAGTT TGGC-TTGTC TCAGACAGCT CTAGAAATAG 48178 |||||||| |||| ||||| |||||||||| |||||||||| .......... .......... ..TTTCAGTT TGGCTTTGTC TCAGACAGCT CTAGAAATAG 68 CATCTATGGA TAGATTGCTG CACATCCCCG AGGATTCTGT TCCTTGCAAA ATTCGTGCCA 48238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTATGGA TAGATTGCTG CACATCCCCG AGGATTCTGT TCCTTGCAAA ATTCGTGCCA 128 AGCGTGGTTG TGCTACTCAT CCTCGCAGCA TTGCAGAAAG GGTGATCTTC ATATTTCTTA 48298 |||||||||| |||||||||| |||||||||| |||||||||| | AGCGTGGTTG TGCTACTCAT CCTCGCAGCA TTGCAGAAAG G......... .......... 169 AGCCATTCCT TTACTTGGCC CTTATAATGA ACAAAAAAAT AAAAATCCAA TTGAACTTTA 48358 .......... .......... .......... .......... .......... .......... 169 TCAATTTATT TTTCCCCTGC TTCATTTCAT TTGATATGGC TTCGATTGAG AATGAATTTC 48418 .......... .......... .......... .......... .......... .......... 169 AAGATACTAT CTGAAGCTGA TGAAACTCTT CCAGCCACTG ATTTTAAATG CCAACTTTGC 48478 .......... .......... .......... .......... .......... .......... 169 TATTATGTAA CAATAGATTT AATTGTCAAC ATGTAGTAGT TGTGGCATTT GAAATACTTT 48538 .......... .......... .......... .......... .......... .......... 169 TCCTCAAAAT TTGGATCATC ATAGCTATGT TTTGCTTTTA CTAATACACA ATAATGAACG 48598 .......... .......... .......... .......... .......... .......... 169 TTGTATTCTT TTCTCATCTT ATGCAGGAGA GAAGAACCAG AATTAGTGGG AAACTAAAGA 48658 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAGA GAAGAACCAG AATTAGTGGG AAACTAAAGA 203 AGTTACAAGA TCTTGTTCCA AACATGGACA AGGTATAGTT TGCTTCCACT CCACAATATT 48718 |||||||||| |||||||||| |||||||||| || AGTTACAAGA TCTTGTTCCA AACATGGACA AG........ .......... .......... 235 TTCTCAATTG GAGCTTATTG GAACATGTTT TAGCTGTAAA TTTTGTCGCA GCAAACGAGC 48778 .......... .......... .......... .......... .......... .......... 235 TACACTCCAA TATTAACAAC ATTTTCTTGT TTGTTTTCGC AGCAAACGAG CTATGCTGAC 48838 |||||||| |||||||||| .......... .......... .......... .......... ..CAAACGAG CTATGCTGAC 253 ATGCTGGATC TAGCAGTGCA GCATATTCGA ACCCTTCAAG ATCAGGTTCA GGTGAGTGAT 48898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ATGCTGGATC TAGCAGTGCA GCATATTCGA ACCCTTCAAG ATCAGGTTCA G......... 304 CAAAATGATC AACCTTACTG CTTTGCAGCT TTACCTAAAT TACTTATACT CTATGTTCCT 48958 .......... .......... .......... .......... .......... .......... 304 TACACTCTTC AAAGAAACAG CCAGTGTGTT GGATTAGATC CTCCAAAAGC TATTAGTACA 49018 .......... .......... .......... .......... .......... .......... 304 ACAATTTTGG CCCGAGCAAC ATATCTTGTA TTCTCACATG AGTTTACACC AAACCGAACA 49078 .......... .......... .......... .......... .......... .......... 304 ATTTAACCTT AATGTATTTG GGATAGATGA TGTCTAATAT GTTTTGCAAA TAAAAAATGA 49138 .......... .......... .......... .......... .......... .......... 304 TAAATTTTCT AGCCCCACCT TTATAGCTGT GTGATTGAAA TAGTCGAAAT ATAATTTTCA 49198 .......... .......... .......... .......... .......... .......... 304 CGTTTTCTTA TTCTTATGCA GAATCTGAAT ACAGAACTTG AAAACTGCAA ATGTGGATGT 49258 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .AATCTGAAT ACAGAACTTG AAAACTGCAA ATGTGGATGT 343 AGGAAATCAA GTCAATAACA AAATGGGAGG AAGCACTTTA GCTGAAGATT GACTTAAAAG 49318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAATCAA GTCAATAACA AAATGGGAGG AAGCACTTTA GCTGAAGATT GACTTAAAAG 403 GATTTTTGTC ACCATTATTT TGCTTCTTAG AAACTCAAAT TTGTACATAT GGAAGTAAAT 49378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTTGTC ACCATTATTT TGCTTCTTAG AAACTCAAAT TTGTACATAT GGAAGTAAAT 463 TTCATACTAG TTTTTTAAAG CTAAAAAGTG AACTCTCTTT GTTTTTTTTT CTTTTCCCTT 49438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATACTAG TTTTTTAAAG CTAAAAAGTG AACTCTCTTT GTTTTTTTTT CTTTTCCCTT 523 TTCCAGTTAG AAGACTACGT ATATGATTGT TTTGGATTAT TTCTAGTTTT CTTTTTTCAT 49498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAGTTAG AAGACTACGT ATATGATTGT TTTGGATTAT TTCTAGTTTT CTTTTTTCAT 583 CTAACATTTA CATTTTTAAT TTATTTTTGA GTTTATTTTG CTTGAAGATC ATAAAAGCTA 49558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACATTTA CATTTTTAAT TTATTTTTGA GTTTATTTTG CTTGAAGATC ATAAAAGCTA 643 ATTGATGATG TTGTACAA 49576 |||||||||| |||||||| ATTGATGATG TTGTACAA 661 hqPGS_C09HBa0109D11.1+_SGN-E368036- (47460 47489,48142 48279,48625 48690,48821 48889,49220 49576) ******************************************************************************** EST sequence 34 +strand 450 n (File: SGN-E302680+) 1 CAAGATCTTG TTCCAAACAT GGACAAGCAA ACGAGCTATG CTGACATGCT GGATCTAGCA 61 GTGCAGCATA TTCGAACCCT TCAAGATCAG GTTCAGAATC TGAATACAGA ACTTGAAAAC 121 TGCAAATGTG GATGTAGGAA ATCAAGTCAA TAACAAAATG GGAGGAAGCA CTTTAGCTGA 181 AGATTGACTT AAAAGGATTT TTGTCACCAT TATTTTGCTT CTTAGAAACT CAAATTTGTA 241 CATATGGAAG TAAATTTCAT ACTAGTTTTT TAAAGCTAAA AAGTGAACTC TCTTTGTTTT 301 TTTTTCTTTT CCCTTTTCCA GTTAGAAGAC TACGTATATG ATTGTTTTGG ATTATTTCTA 361 GTTTTCTTTT TTCATCTAAC ATTTACATTT TTAATTTATT TTTGAGTTTA TTTTGCTTGA 421 AGATCATTNN NNANAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 47969 to 50390): Exon 1 48664 48690 ( 27 n); cDNA 1 27 ( 27 n); score: 1.000 Intron 1 48691 48820 ( 130 n); Pd: 0.997 (s: 0), Pa: 0.984 (s: 1.00) Exon 2 48821 48889 ( 69 n); cDNA 28 96 ( 69 n); score: 1.000 Intron 2 48890 49219 ( 330 n); Pd: 0.994 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 49220 49548 ( 329 n); cDNA 97 425 ( 329 n); score: 1.000 PPA cDNA 433 450 MATCH C09HBa0109D11.1+ SGN-E302680+ 1.000 425 0.944 C PGS_C09HBa0109D11.1+_SGN-E302680+ (48664 48690,48821 48889,49220 49548) Alignment (genomic DNA sequence = upper lines): CAAGATCTTG TTCCAAACAT GGACAAGGTA TAGTTTGCTT CCACTCCACA ATATTTTCTC 48723 |||||||||| |||||||||| ||||||| CAAGATCTTG TTCCAAACAT GGACAAG... .......... .......... .......... 27 AATTGGAGCT TATTGGAACA TGTTTTAGCT GTAAATTTTG TCGCAGCAAA CGAGCTACAC 48783 .......... .......... .......... .......... .......... .......... 27 TCCAATATTA ACAACATTTT CTTGTTTGTT TTCGCAGCAA ACGAGCTATG CTGACATGCT 48843 ||| |||||||||| |||||||||| .......... .......... .......... .......CAA ACGAGCTATG CTGACATGCT 50 GGATCTAGCA GTGCAGCATA TTCGAACCCT TCAAGATCAG GTTCAGGTGA GTGATCAAAA 48903 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATCTAGCA GTGCAGCATA TTCGAACCCT TCAAGATCAG GTTCAG.... .......... 96 TGATCAACCT TACTGCTTTG CAGCTTTACC TAAATTACTT ATACTCTATG TTCCTTACAC 48963 .......... .......... .......... .......... .......... .......... 96 TCTTCAAAGA AACAGCCAGT GTGTTGGATT AGATCCTCCA AAAGCTATTA GTACAACAAT 49023 .......... .......... .......... .......... .......... .......... 96 TTTGGCCCGA GCAACATATC TTGTATTCTC ACATGAGTTT ACACCAAACC GAACAATTTA 49083 .......... .......... .......... .......... .......... .......... 96 ACCTTAATGT ATTTGGGATA GATGATGTCT AATATGTTTT GCAAATAAAA AATGATAAAT 49143 .......... .......... .......... .......... .......... .......... 96 TTTCTAGCCC CACCTTTATA GCTGTGTGAT TGAAATAGTC GAAATATAAT TTTCACGTTT 49203 .......... .......... .......... .......... .......... .......... 96 TCTTATTCTT ATGCAGAATC TGAATACAGA ACTTGAAAAC TGCAAATGTG GATGTAGGAA 49263 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AATC TGAATACAGA ACTTGAAAAC TGCAAATGTG GATGTAGGAA 140 ATCAAGTCAA TAACAAAATG GGAGGAAGCA CTTTAGCTGA AGATTGACTT AAAAGGATTT 49323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAGTCAA TAACAAAATG GGAGGAAGCA CTTTAGCTGA AGATTGACTT AAAAGGATTT 200 TTGTCACCAT TATTTTGCTT CTTAGAAACT CAAATTTGTA CATATGGAAG TAAATTTCAT 49383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCACCAT TATTTTGCTT CTTAGAAACT CAAATTTGTA CATATGGAAG TAAATTTCAT 260 ACTAGTTTTT TAAAGCTAAA AAGTGAACTC TCTTTGTTTT TTTTTCTTTT CCCTTTTCCA 49443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGTTTTT TAAAGCTAAA AAGTGAACTC TCTTTGTTTT TTTTTCTTTT CCCTTTTCCA 320 GTTAGAAGAC TACGTATATG ATTGTTTTGG ATTATTTCTA GTTTTCTTTT TTCATCTAAC 49503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGAAGAC TACGTATATG ATTGTTTTGG ATTATTTCTA GTTTTCTTTT TTCATCTAAC 380 ATTTACATTT TTAATTTATT TTTGAGTTTA TTTTGCTTGA AGATC 49548 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTTACATTT TTAATTTATT TTTGAGTTTA TTTTGCTTGA AGATC 425 hqPGS_C09HBa0109D11.1+_SGN-E302680+ (48664 48690,48821 48889,49220 49548) ******************************************************************************** EST sequence 64 +strand 532 n (File: SGN-E331265+) 1 ATAGAGAGAG AGAGAGAGGG AGCTCTTCCT TCTTCCTTCA AACATTCAAA CCTTCATCCA 61 TTTCATTTCA TTAAACCTTT TCTCTAACTT CTCCTAATAC GTGAACTCGG AAAATATATC 121 TTTGTTGAAA TCCGAATCTG AGAACTATGA CTCTCATTTT TACCCCATAA TGTTTGTTTC 181 TTCTCTTGAT GAAGTCAGCT TTCAATTTTA TTTATGATTG ATGAATCAGA AAATTGAAGA 241 TAATAAACAG GCATAAGAGA AGACAAAAGT TAACTAACTG AAGTCTTGTA CGGAAGATGG 301 CTCAAAATGA AATTGAAGAT ATGTTAGATC ACCTGAGAAG GATCAAGAGT GGAGGTAATC 361 TGGATAGGGT CAAGATCAAT CGAATTGAGA AACTTGAAAT GGTGTTCAAG TATCATCATG 421 TTCTTTTGCC TGATTCCATC GTCAAACTCA AAAAGAAGGA CAAATGGATT GCGAAAATGG 481 TTCAGTGGGT ATTGGATGGA ATTCCGGATG AATGTAAAAC TAACCTTAAT TT Predicted gene structure (within gDNA segment 49572 to 51576): Exon 1 50185 50461 ( 277 n); cDNA 3 279 ( 277 n); score: 1.000 Intron 1 50462 50713 ( 252 n); Pd: 0.995 (s: 1.00), Pa: 0.281 (s: 1.00) Exon 2 50714 50966 ( 253 n); cDNA 280 532 ( 253 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E331265+ 1.000 530 0.996 C PGS_C09HBa0109D11.1+_SGN-E331265+ (50185 50461,50714 50966) Alignment (genomic DNA sequence = upper lines): AGAGAGAGAG AGAGAGGGAG CTCTTCCTTC TTCCTTCAAA CATTCAAACC TTCATCCATT 50244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGAGAG AGAGAGGGAG CTCTTCCTTC TTCCTTCAAA CATTCAAACC TTCATCCATT 62 TCATTTCATT AAACCTTTTC TCTAACTTCT CCTAATACGT GAACTCGGAA AATATATCTT 50304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCATT AAACCTTTTC TCTAACTTCT CCTAATACGT GAACTCGGAA AATATATCTT 122 TGTTGAAATC CGAATCTGAG AACTATGACT CTCATTTTTA CCCCATAATG TTTGTTTCTT 50364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAAATC CGAATCTGAG AACTATGACT CTCATTTTTA CCCCATAATG TTTGTTTCTT 182 CTCTTGATGA AGTCAGCTTT CAATTTTATT TATGATTGAT GAATCAGAAA ATTGAAGATA 50424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTGATGA AGTCAGCTTT CAATTTTATT TATGATTGAT GAATCAGAAA ATTGAAGATA 242 ATAAACAGGC ATAAGAGAAG ACAAAAGTTA ACTAACTGTA AGTCATCTTC TTCATGAATT 50484 |||||||||| |||||||||| |||||||||| ||||||| ATAAACAGGC ATAAGAGAAG ACAAAAGTTA ACTAACT... .......... .......... 279 ACTTTTTCCT ATTGATACAA AATTAATAGT GTTATTATAT TAGGAAGCCA GTTTCTTTGT 50544 .......... .......... .......... .......... .......... .......... 279 TGACGAAAAC TGAAATCAAG AAAAAAAGTC TGAGATCATA TAAAAAAGGT TTAACTATGC 50604 .......... .......... .......... .......... .......... .......... 279 AAAATTTGTT AGATGAAATG GTGCATAAGA TGTATAATCT TTCAAAAGAC TAGATGAATA 50664 .......... .......... .......... .......... .......... .......... 279 AAAATGTCGC TCTTAAAGAA ACTAATTCCA AGAGTTGGTA CACTTGCAGG AAGTCTTGTA 50724 | |||||||||| .......... .......... .......... .......... .........G AAGTCTTGTA 290 CGGAAGATGG CTCAAAATGA AATTGAAGAT ATGTTAGATC ACCTGAGAAG GATCAAGAGT 50784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGG CTCAAAATGA AATTGAAGAT ATGTTAGATC ACCTGAGAAG GATCAAGAGT 350 GGAGGTAATC TGGATAGGGT CAAGATCAAT CGAATTGAGA AACTTGAAAT GGTGTTCAAG 50844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTAATC TGGATAGGGT CAAGATCAAT CGAATTGAGA AACTTGAAAT GGTGTTCAAG 410 TATCATCATG TTCTTTTGCC TGATTCCATC GTCAAACTCA AAAAGAAGGA CAAATGGATT 50904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATCATG TTCTTTTGCC TGATTCCATC GTCAAACTCA AAAAGAAGGA CAAATGGATT 470 GCGAAAATGG TTCAGTGGGT ATTGGATGGA ATTCCGGATG AATGTAAAAC TAACCTTAAT 50964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAAAATGG TTCAGTGGGT ATTGGATGGA ATTCCGGATG AATGTAAAAC TAACCTTAAT 530 TT 50966 || TT 532 hqPGS_C09HBa0109D11.1+_SGN-E331265+ (50185 50461,50714 50966) ******************************************************************************** EST sequence 16 +strand 794 n (File: SGN-E539103+) 1 TCTTGATTAT CTTAGTAGAG CTGGAAATGA AGAAAATTTT TCTCGGTGAA CTAAAGGCTT 61 CCAAGTTTAC TCAATCAAGA ACTTTCAAGG ACAAGAAATT ACCAAAAGGA TTTTCTCATC 121 ATCTCCATAG TCTGTTGATG TATCTTAGAA ACAAAAAGCT TGAGAAATTT CCTAATAATA 181 ACTCTCCTCA AAATATTGAT ATAGCAATAG AGTTCTTGTT GGTTTTCCTT GATGCTGATG 241 TCGGAAATCA TGTAATTAAT GGTAACTGGT TGAATGAAGT TATGGAAAAG GTTGGAGCTA 301 TAGCGGGTGA TGTTCTATAT GTAATTCAAA AGCTTCTTCC TAGCTCTATA AAAAAAGATG 361 ACAATAGCAA AATAAGTCTT TGCTCAATAC AGATATGGGA GAAAACTAAA GATCTGAAGG 421 CACAAGTGGA GACGCACTAT AAATCCTTAA AATTCACTCC ATCGCAATTC CCCACTGTTG 481 GTGGATGGAG CTTTCTGGAT TCTCTTATGC GGAAACTGAA AGAGATGTCG AAATCTAAAT 541 CTTGTTTAGA TTTCCTGATG AAACCTCTTT TGGGGAATTT GGAGAAAGAG CTATCAGCTC 601 TTACATCCAT TTTAGAGAAG GATCTGTCAT CTTTATCATC CATTTTAAGC GATGTCGCCA 661 AGGTGCACCA TGAACATGAA ATTCTTCAAG ATCTTCACAG GCGTACTATC AATTGGGCAT 721 ATGAAGCGGA AGTTGCGATT GACTCTATTC TTGCTCAGTA TAATGTCTTT TGGCATATTT 781 TTTGCTCACT TCCT Predicted gene structure (within gDNA segment 50867 to 52870): Exon 1 51467 52260 ( 794 n); cDNA 1 794 ( 794 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E539103+ 1.000 794 1.000 C PGS_C09HBa0109D11.1+_SGN-E539103+ (51467 52260) Alignment (genomic DNA sequence = upper lines): TCTTGATTAT CTTAGTAGAG CTGGAAATGA AGAAAATTTT TCTCGGTGAA CTAAAGGCTT 51526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGATTAT CTTAGTAGAG CTGGAAATGA AGAAAATTTT TCTCGGTGAA CTAAAGGCTT 60 CCAAGTTTAC TCAATCAAGA ACTTTCAAGG ACAAGAAATT ACCAAAAGGA TTTTCTCATC 51586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGTTTAC TCAATCAAGA ACTTTCAAGG ACAAGAAATT ACCAAAAGGA TTTTCTCATC 120 ATCTCCATAG TCTGTTGATG TATCTTAGAA ACAAAAAGCT TGAGAAATTT CCTAATAATA 51646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCATAG TCTGTTGATG TATCTTAGAA ACAAAAAGCT TGAGAAATTT CCTAATAATA 180 ACTCTCCTCA AAATATTGAT ATAGCAATAG AGTTCTTGTT GGTTTTCCTT GATGCTGATG 51706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTCCTCA AAATATTGAT ATAGCAATAG AGTTCTTGTT GGTTTTCCTT GATGCTGATG 240 TCGGAAATCA TGTAATTAAT GGTAACTGGT TGAATGAAGT TATGGAAAAG GTTGGAGCTA 51766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAAATCA TGTAATTAAT GGTAACTGGT TGAATGAAGT TATGGAAAAG GTTGGAGCTA 300 TAGCGGGTGA TGTTCTATAT GTAATTCAAA AGCTTCTTCC TAGCTCTATA AAAAAAGATG 51826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCGGGTGA TGTTCTATAT GTAATTCAAA AGCTTCTTCC TAGCTCTATA AAAAAAGATG 360 ACAATAGCAA AATAAGTCTT TGCTCAATAC AGATATGGGA GAAAACTAAA GATCTGAAGG 51886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATAGCAA AATAAGTCTT TGCTCAATAC AGATATGGGA GAAAACTAAA GATCTGAAGG 420 CACAAGTGGA GACGCACTAT AAATCCTTAA AATTCACTCC ATCGCAATTC CCCACTGTTG 51946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAGTGGA GACGCACTAT AAATCCTTAA AATTCACTCC ATCGCAATTC CCCACTGTTG 480 GTGGATGGAG CTTTCTGGAT TCTCTTATGC GGAAACTGAA AGAGATGTCG AAATCTAAAT 52006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGATGGAG CTTTCTGGAT TCTCTTATGC GGAAACTGAA AGAGATGTCG AAATCTAAAT 540 CTTGTTTAGA TTTCCTGATG AAACCTCTTT TGGGGAATTT GGAGAAAGAG CTATCAGCTC 52066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTTAGA TTTCCTGATG AAACCTCTTT TGGGGAATTT GGAGAAAGAG CTATCAGCTC 600 TTACATCCAT TTTAGAGAAG GATCTGTCAT CTTTATCATC CATTTTAAGC GATGTCGCCA 52126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACATCCAT TTTAGAGAAG GATCTGTCAT CTTTATCATC CATTTTAAGC GATGTCGCCA 660 AGGTGCACCA TGAACATGAA ATTCTTCAAG ATCTTCACAG GCGTACTATC AATTGGGCAT 52186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGCACCA TGAACATGAA ATTCTTCAAG ATCTTCACAG GCGTACTATC AATTGGGCAT 720 ATGAAGCGGA AGTTGCGATT GACTCTATTC TTGCTCAGTA TAATGTCTTT TGGCATATTT 52246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCGGA AGTTGCGATT GACTCTATTC TTGCTCAGTA TAATGTCTTT TGGCATATTT 780 TTTGCTCACT TCCT 52260 |||||||||| |||| TTTGCTCACT TCCT 794 hqPGS_C09HBa0109D11.1+_SGN-E539103+ (51467 52260) ******************************************************************************** EST sequence 22 +strand 377 n (File: SGN-E280953+) 1 CTTGATTATC TTAGTAGAGC TGGAAATGAA GAAAATTTTT CTCGGTGAAC TAAAGGCTTC 61 CAAGTTTACT CAATCAAGAA CTTTCAAGGA CAAGAAATTA CCAAAAGGAT TTTCTCATCA 121 TCTCCATAGT CTGGTGATGT ATCTTAGAAA CAAAAAGCTT GAGAAATTTC CTAATAATAA 181 CTCTCCTCAA AATATTGATA TAGCAATAGA GGTCTTGTTG GTTTTCCTTG ATGCTGATGT 241 CGGAAATCAT GTAATTAATG GTAACTGGTT GAATGAAGTT ATGGAAAAGG TTGGAGCTAT 301 AGCGGGTGAT GTTCTATATG TAATTCAAAA GCTTCTTCCT AGCTCTATTA AAAAAGATGA 361 CAATAGCCAA ATAAGTC Predicted gene structure (within gDNA segment 50868 to 52544): Exon 1 51468 51844 ( 377 n); cDNA 1 377 ( 377 n); score: 0.989 MATCH C09HBa0109D11.1+ SGN-E280953+ 0.989 377 1.000 C PGS_C09HBa0109D11.1+_SGN-E280953+ (51468 51844) Alignment (genomic DNA sequence = upper lines): CTTGATTATC TTAGTAGAGC TGGAAATGAA GAAAATTTTT CTCGGTGAAC TAAAGGCTTC 51527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGATTATC TTAGTAGAGC TGGAAATGAA GAAAATTTTT CTCGGTGAAC TAAAGGCTTC 60 CAAGTTTACT CAATCAAGAA CTTTCAAGGA CAAGAAATTA CCAAAAGGAT TTTCTCATCA 51587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTTTACT CAATCAAGAA CTTTCAAGGA CAAGAAATTA CCAAAAGGAT TTTCTCATCA 120 TCTCCATAGT CTGTTGATGT ATCTTAGAAA CAAAAAGCTT GAGAAATTTC CTAATAATAA 51647 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCATAGT CTGGTGATGT ATCTTAGAAA CAAAAAGCTT GAGAAATTTC CTAATAATAA 180 CTCTCCTCAA AATATTGATA TAGCAATAGA GTTCTTGTTG GTTTTCCTTG ATGCTGATGT 51707 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CTCTCCTCAA AATATTGATA TAGCAATAGA GGTCTTGTTG GTTTTCCTTG ATGCTGATGT 240 CGGAAATCAT GTAATTAATG GTAACTGGTT GAATGAAGTT ATGGAAAAGG TTGGAGCTAT 51767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAATCAT GTAATTAATG GTAACTGGTT GAATGAAGTT ATGGAAAAGG TTGGAGCTAT 300 AGCGGGTGAT GTTCTATATG TAATTCAAAA GCTTCTTCCT AGCTCTATAA AAAAAGATGA 51827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AGCGGGTGAT GTTCTATATG TAATTCAAAA GCTTCTTCCT AGCTCTATTA AAAAAGATGA 360 CAATAGCAAA ATAAGTC 51844 ||||||| || ||||||| CAATAGCCAA ATAAGTC 377 hqPGS_C09HBa0109D11.1+_SGN-E280953+ (51468 51844) ******************************************************************************** EST sequence 3 +strand 505 n (File: SGN-E300728+) 1 GACATATTAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 61 TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 121 GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 181 ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 241 AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 301 CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 361 GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 421 GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 481 CTTATTCTCT TCCGTTCCTC ACAAA Predicted gene structure (within gDNA segment 51701 to 53487): Exon 1 52373 52877 ( 505 n); cDNA 1 505 ( 505 n); score: 0.998 MATCH C09HBa0109D11.1+ SGN-E300728+ 0.998 505 1.000 C PGS_C09HBa0109D11.1+_SGN-E300728+ (52373 52877) Alignment (genomic DNA sequence = upper lines): GACATATCAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 52432 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATATTAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 60 TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 52492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 120 GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 52552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 180 ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 52612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 240 AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 52672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 300 CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 52732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 360 GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 52792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 420 GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 52852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 480 CTTATTCTCT TCCGTTCCTC ACAAA 52877 |||||||||| |||||||||| ||||| CTTATTCTCT TCCGTTCCTC ACAAA 505 hqPGS_C09HBa0109D11.1+_SGN-E300728+ (52373 52877) ******************************************************************************** EST sequence 9 +strand 611 n (File: SGN-E371690+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 481 CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 541 AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 601 AAACCGAGTG A Predicted gene structure (within gDNA segment 52275 to 54095): Exon 1 52875 53485 ( 611 n); cDNA 1 611 ( 611 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E371690+ 1.000 611 1.000 C PGS_C09HBa0109D11.1+_SGN-E371690+ (52875 53485) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 52934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 52994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 53054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 53114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 53174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 53234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 53294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 420 GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 53354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 480 CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 53414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 540 AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 53474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 600 AAACCGAGTG A 53485 |||||||||| | AAACCGAGTG A 611 hqPGS_C09HBa0109D11.1+_SGN-E371690+ (52875 53485) ******************************************************************************** EST sequence 12 +strand 432 n (File: SGN-E280658+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC AT Predicted gene structure (within gDNA segment 52275 to 53916): Exon 1 52875 53306 ( 432 n); cDNA 1 432 ( 432 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E280658+ 1.000 432 1.000 C PGS_C09HBa0109D11.1+_SGN-E280658+ (52875 53306) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 52934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 52994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 53054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 53114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 53174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 53234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 53294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 420 GATGGATCTC AT 53306 |||||||||| || GATGGATCTC AT 432 hqPGS_C09HBa0109D11.1+_SGN-E280658+ (52875 53306) ******************************************************************************** EST sequence 7 +strand 301 n (File: SGN-E370462+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 G Predicted gene structure (within gDNA segment 52275 to 53785): Exon 1 52875 53175 ( 301 n); cDNA 1 301 ( 301 n); score: 0.997 MATCH C09HBa0109D11.1+ SGN-E370462+ 0.997 301 1.000 C PGS_C09HBa0109D11.1+_SGN-E370462+ (52875 53175) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 52934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 52994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 53054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 53114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 240 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 53174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 G 53175 | G 301 hqPGS_C09HBa0109D11.1+_SGN-E370462+ (52875 53175) ******************************************************************************** EST sequence 14 +strand 451 n (File: SGN-E241579+) 1 AAAAGGAAGA TTTCCCGCCT GAACTACAAG ATGTGAGTCG AGCACTTGCA GAAAAATGCA 61 CAGGACTGCC CCTAGTGGTT GACTTGGAAG CTGGAATAAT CAAAAAAAGG AAAATGGCAG 121 AATCTTGGTG GAATGAGGTG AAAGATATCT TTATTTGACC ACCTTAATCG TGAGTCGGAA 181 GAATATAGGC TTTCAACTAT GCAGGTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT 241 TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA 301 AGTCTATGGA TTGCTGAAAG AATTGTGCAG AGCATTGAAT CTGGGAGATT GATGATGGAA 361 GAGGCAGATG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT 421 ATAAGGTATA ATGGTAAGGT CAAATACTGT C Predicted gene structure (within gDNA segment 52316 to 53975): Exon 1 52916 53365 ( 450 n); cDNA 1 451 ( 451 n); score: 0.966 MATCH C09HBa0109D11.1+ SGN-E241579+ 0.966 450 0.998 C PGS_C09HBa0109D11.1+_SGN-E241579+ (52916 53365) Alignment (genomic DNA sequence = upper lines): AAAAGGAAGA TTTCCCGCCT GAACTACAAG ATGTGAGTCG AGCAGTTGCA GAAAAATGCA 52975 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AAAAGGAAGA TTTCCCGCCT GAACTACAAG ATGTGAGTCG AGCACTTGCA GAAAAATGCA 60 AAGGACTGCC CCTAGTGGTT GTCTTGGTAG CTGGAATAAT CAAAAAAAGG AAAATGGAAG 53035 ||||||||| |||||||||| | ||||| || |||||||||| |||||||||| ||||||| || CAGGACTGCC CCTAGTGGTT GACTTGGAAG CTGGAATAAT CAAAAAAAGG AAAATGGCAG 120 AATCTTGGTG GAATGAGGTG AAAGAT-TCT TTATTTGACC ACCTTAATCG TGAGTCGGAA 53094 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AATCTTGGTG GAATGAGGTG AAAGATATCT TTATTTGACC ACCTTAATCG TGAGTCGGAA 180 GAATATAGTC TTTCAACTAT GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT 53154 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GAATATAGGC TTTCAACTAT GCAGGTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT 240 TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA 53214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA 300 AGTCTATGGA TTGCGGAAGG ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA 53274 |||||||||| |||| ||| | | |||||||| |||||||||| |||||||||| | |||||||| AGTCTATGGA TTGCTGAAAG AATTGTGCAG AGCATTGAAT CTGGGAGATT GATGATGGAA 360 GAGGCAGCTG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT 53334 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCAGATG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT 420 AGAAGGTATA ATGGTAAGGT CAAATACTGT C 53365 | |||||||| |||||||||| |||||||||| | ATAAGGTATA ATGGTAAGGT CAAATACTGT C 451 hqPGS_C09HBa0109D11.1+_SGN-E241579+ (52916 53365) ******************************************************************************** EST sequence 48 +strand 642 n (File: SGN-E368738+) 1 TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 61 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 121 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 181 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 241 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 301 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 361 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 421 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 481 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAGATTAAGA AAGACGTTGA AGAGAATGAA 541 GGAAACGACC GTATTGACCT CATTATCAAA GGATGGTAGG GAATATAATT CGAGATGAAA 601 CATCAAAATC ACAGACAGAG TGGCCGGGGA ATAACAAGGC AA Predicted gene structure (within gDNA segment 53389 to 55413): Exon 1 53989 54558 ( 570 n); cDNA 1 570 ( 570 n); score: 1.000 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 54637 54669 ( 33 n); cDNA 571 603 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 (s: 0), Pa: 0.979 (s: 0) Exon 3 54765 54803 ( 39 n); cDNA 604 642 ( 39 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E368738+ 1.000 642 1.000 C PGS_C09HBa0109D11.1+_SGN-E368738+ (53989 54558,54637 54669,54765 54803) Alignment (genomic DNA sequence = upper lines): TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 54048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 60 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 54108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 120 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 54168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 180 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 54228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 240 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 54288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 300 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 54348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 360 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 54408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 420 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 54468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 480 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAGATTAAGA AAGACGTTGA AGAGAATGAA 54528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAGATTAAGA AAGACGTTGA AGAGAATGAA 540 GGAAACGACC GTATTGACCT CATTATCAAA GTAAGTAGAA ACAAACTCCT AAATATGTTC 54588 |||||||||| |||||||||| |||||||||| GGAAACGACC GTATTGACCT CATTATCAAA .......... .......... .......... 570 TGTTTTTTTG AGTATCTAAC TAACTTGACA CCACTATGTA TAATACAGGG ATGGTAGGGA 54648 || |||||||||| .......... .......... .......... .......... ........GG ATGGTAGGGA 582 ATATAATTCG AGATGAAACA TGTACGTGCC TGTAATCACA ACAATGCTAT ATATTCCTTC 54708 |||||||||| |||||||||| | ATATAATTCG AGATGAAACA T......... .......... .......... .......... 603 TTCTAATTTG ACGCTTGCTT TTGCTTAATT GCTCCATGTT GATTTCAAAA TTGCAGCAAA 54768 |||| .......... .......... .......... .......... .......... ......CAAA 607 ATCACAGACA GAGTGGCCGG GGAATAACAA GGCAA 54803 |||||||||| |||||||||| |||||||||| ||||| ATCACAGACA GAGTGGCCGG GGAATAACAA GGCAA 642 hqPGS_C09HBa0109D11.1+_SGN-E368738+ (53989 54558,54637 54669,54765 54803) ******************************************************************************** EST sequence 33 +strand 664 n (File: SGN-E398442+) 1 TGAGTTCGAA GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG 61 TTTAAAGCCT TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC 121 TACATTGATA AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACATT 181 AATGGAAGAG GAAGCTGAAG GTTACTTGAT GGATCTCATT AGCAGTAACA TGGTAATGCT 241 TTCAAAGAGA AGTTATAAGG GTAAAGTCAA ATACTGTCAG GTTCATGATG TTGTGCATCA 301 CTTTTGCTTG GAAAAGAGTA GAGAAGCAAA GTTTATGCTT GCAGTGAAGG GTCAATATAT 361 CCAGTTTCAA CCTTTGGATT GGAAGGGAAC TCGAGTGAGC TTCAGTTTTA GTGAAGAGCT 421 TTCCAAGTTT GCATCTCTGG TCTCCAAAAC ACAGAAGCCT TTCCATCAAC ACTTGAGGTC 481 ATTGATAACG ACCAATCGAG CAGAATCTAT TGATGTGATT CTCTTCTGTC AGATTAGTGA 541 ATTGCGACTT CTTAAAGTCT TGGATTTGAG TTCTTATACT GTGGAATTTT TGTCGTTAGC 601 TACATTCAAA CCACTAAATC AGCTGAAGTA CCTCGCAGTT CAGGCTGATA AATTCTATTT 661 TGAT Predicted gene structure (within gDNA segment 52278 to 56395): Exon 1 53085 53751 ( 667 n); cDNA 1 664 ( 664 n); score: 0.841 MATCH C09HBa0109D11.1+ SGN-E398442+ 0.841 667 1.005 C PGS_C09HBa0109D11.1+_SGN-E398442+ (53085 53751) Alignment (genomic DNA sequence = upper lines): TGAGTCGGAA GAATATAGTC TTTCAACTAT GCAGTTGAGT TACTATAACT TAACCGACTG 53144 ||||| ||| |||||||||| | ||||||| |||||||||| | |||||| || || |||| TGAGTTCGAA GAATATAGTC TGGCAACTAT GCAGTTGAGT TTTGATAACT TACCCCACTG 60 TTTAAAGCCT TGTCTTCTTT ATATGGGGAT GTTTCAGGAG GATGCAATAA TTCGAGTATC 53204 |||||||||| |||||||||| ||||||| || |||| |||| || |||| || ||| || ||| TTTAAAGCCT TGTCTTCTTT ATATGGGAAT GTTTTCGGAG GACGCAAGAA TTCCAGCATC 120 TGAATTGATA AGTCTATGGA TTGCGGAAGG ATTTGTGCAG AGCATTGAAT CTGGGAGATT 53264 | ||||||| ||| |||||| |||| ||||| ||| ||| || | || ||||| |||| | | TACATTGATA AGTTTATGGA TTGCTGAAGG ATTCGTGGAG AACACTGAAT CTGGTACA-- 178 GTTGATGGAA GAGGCAGCTG AAGGTTACTT GATGGATCTC ATTCAGAGTA ACGTGGTAAT 53324 || |||||| |||| ||||| |||||||||| |||||||||| ||| |||| || ||||||| -TTAATGGAA GAGGAAGCTG AAGGTTACTT GATGGATCTC ATTAGCAGTA ACATGGTAAT 237 GGTTTCAAAT AGAAGGTATA ATGGTAAGGT CAAATACTGT CAGGTTCATG ACGTAGTGCT 53384 | ||||||| ||||| |||| | ||||| || |||||||||| |||||||||| | || |||| GCTTTCAAAG AGAAGTTATA AGGGTAAAGT CAAATACTGT CAGGTTCATG ATGTTGTGCA 297 TCACTTTTGC TTGGAGAAGA GTCTAGAAGA AAAGTTTATG TTGGCAGTGA AGGGGCATGA 53444 |||||||||| ||||| |||| || ||||| |||||||||| | ||||||| |||| || | TCACTTTTGC TTGGAAAAGA GTAGAGAAGC AAAGTTTATG CTTGCAGTGA AGGGTCAATA 357 TAGCCAGTTT CAACCTTTTG AATGGAAGGA AAACCGAGTG AGCTTCAGTT TCAGTAAAGA 53504 || ||||||| |||||||| | | ||||||| || |||||| |||||||||| | ||| |||| TATCCAGTTT CAACCTTTGG ATTGGAAGGG AACTCGAGTG AGCTTCAGTT TTAGTGAAGA 417 GCTTTCCAAG TTTGCATCTC TAGGATCCAA AACACGGAAG TCTTTCCACC AACACTTGAG 53564 |||||||||| |||||||||| | | ||||| ||||| |||| ||||||| | |||||||||| GCTTTCCAAG TTTGCATCTC TGGTCTCCAA AACACAGAAG CCTTTCCATC AACACTTGAG 477 GTCACTGATA ACGATAAATA ACCTAGAGTT AATTGATGGG ATTCCCTTCT GTCAGATTCT 53624 |||| ||||| |||| ||| ||| | ||||||| | |||| ||||| |||||||| GTCATTGATA ACGACCAATC GAGCAGAATC TATTGATGTG ATTCTCTTCT GTCAGATTAG 537 TAAATTGCGA CTTCTTAAGG TCTTGATTTT GACTTCCCAT GAAGTGGATT ATTTGTCGTC 53684 | |||||||| |||||||| | ||||| ||| || ||| || ||||| | |||||||| TGAATTGCGA CTTCTTAAAG TCTTGGATTT GAGTTCTTAT ACTGTGGAAT TTTTGTCGTT 597 AGCTACATTC AAACCTCTAA ATCACCTGAA ATACCTCGCA GTTTGTGCAA ATAAGTTTTA 53744 |||||||||| ||||| |||| |||| ||||| ||||||||| ||| || |||| || || AGCTACATTC AAACCACTAA ATCAGCTGAA GTACCTCGCA GTTCAGGCTG ATAAATTCTA 657 CTTTCAT 53751 ||| || TTTTGAT 664 hqPGS_C09HBa0109D11.1+_SGN-E398442+ (53085 53751) ******************************************************************************** EST sequence 24 +strand 499 n (File: SGN-E204998+) 1 GAGTTCGAAG AATATAGTCT GGCAACTATG CAGTTGAGTT TTGATAACTT ACCCCACTGT 61 TTAAAGCCTT GTCTTCTTTA TATGGGAATG TTTTCGGAGG ACGCAAGAAT TCCAGCATCT 121 ACATTGATAA GTTTATGGAT TGCTGAAGGA TTCGTGGAGA ACACTGAATC TGGTACATTA 181 ATGGAAGAGG AAGCTGAAGG TTACTTGATG GATCTCATTA GCAGTAACAT GGTAATGCTT 241 TCAAAGAGAA GTTATAAGGG TAAAGTCAAA TACTGTCAGG TTCATGATGT TGTGCATCAC 301 TTTTGCTTGG AAAAGAGTAG AGAAGCAAAG TTTATGCTTG CAGTGAAGGG TCAATATATC 361 CAGTTTCAAC CTTTGGATTG GAAGGGAACT CGAGTGAGCT TCAGTTTTAG TGAAGAGCTT 421 TCCAAGTTTG CATCTCTGGT CTCCAAAACA CAGAAGCCTT TCCATCAACA CTTGAGGTCA 481 TTGATAACGA CCAATCGAG Predicted gene structure (within gDNA segment 52288 to 54755): Exon 1 53086 53583 ( 498 n); cDNA 1 495 ( 495 n); score: 0.861 MATCH C09HBa0109D11.1+ SGN-E204998+ 0.861 498 0.998 C PGS_C09HBa0109D11.1+_SGN-E204998+ (53086 53583) Alignment (genomic DNA sequence = upper lines): GAGTCGGAAG AATATAGTCT TTCAACTATG CAGTTGAGTT ACTATAACTT AACCGACTGT 53145 |||| |||| |||||||||| |||||||| |||||||||| ||||||| | || ||||| GAGTTCGAAG AATATAGTCT GGCAACTATG CAGTTGAGTT TTGATAACTT ACCCCACTGT 60 TTAAAGCCTT GTCTTCTTTA TATGGGGATG TTTCAGGAGG ATGCAATAAT TCGAGTATCT 53205 |||||||||| |||||||||| |||||| ||| ||| ||||| | |||| ||| || || |||| TTAAAGCCTT GTCTTCTTTA TATGGGAATG TTTTCGGAGG ACGCAAGAAT TCCAGCATCT 120 GAATTGATAA GTCTATGGAT TGCGGAAGGA TTTGTGCAGA GCATTGAATC TGGGAGATTG 53265 |||||||| || ||||||| ||| |||||| || ||| ||| || |||||| ||| | | ACATTGATAA GTTTATGGAT TGCTGAAGGA TTCGTGGAGA ACACTGAATC TGGTACA--- 177 TTGATGGAAG AGGCAGCTGA AGGTTACTTG ATGGATCTCA TTCAGAGTAA CGTGGTAATG 53325 || ||||||| ||| |||||| |||||||||| |||||||||| || ||||| | |||||||| TTAATGGAAG AGGAAGCTGA AGGTTACTTG ATGGATCTCA TTAGCAGTAA CATGGTAATG 237 GTTTCAAATA GAAGGTATAA TGGTAAGGTC AAATACTGTC AGGTTCATGA CGTAGTGCTT 53385 ||||||| | |||| ||||| ||||| ||| |||||||||| |||||||||| || |||| | CTTTCAAAGA GAAGTTATAA GGGTAAAGTC AAATACTGTC AGGTTCATGA TGTTGTGCAT 297 CACTTTTGCT TGGAGAAGAG TCTAGAAGAA AAGTTTATGT TGGCAGTGAA GGGGCATGAT 53445 |||||||||| |||| ||||| | ||||| | ||||||||| | |||||||| ||| || || CACTTTTGCT TGGAAAAGAG TAGAGAAGCA AAGTTTATGC TTGCAGTGAA GGGTCAATAT 357 AGCCAGTTTC AACCTTTTGA ATGGAAGGAA AACCGAGTGA GCTTCAGTTT CAGTAAAGAG 53505 | |||||||| ||||||| || ||||||| | | ||||||| |||||||||| ||| ||||| ATCCAGTTTC AACCTTTGGA TTGGAAGGGA ACTCGAGTGA GCTTCAGTTT TAGTGAAGAG 417 CTTTCCAAGT TTGCATCTCT AGGATCCAAA ACACGGAAGT CTTTCCACCA ACACTTGAGG 53565 |||||||||| |||||||||| | |||||| |||| |||| ||||||| || |||||||||| CTTTCCAAGT TTGCATCTCT GGTCTCCAAA ACACAGAAGC CTTTCCATCA ACACTTGAGG 477 TCACTGATAA CGATAAAT 53583 ||| |||||| ||| ||| TCATTGATAA CGACCAAT 495 hqPGS_C09HBa0109D11.1+_SGN-E204998+ (53086 53583) ******************************************************************************** EST sequence 90 -strand 808 n (File: SGN-E548165-) 1 ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT CCAACATTGT 61 ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG CTCATATCGA 121 AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT TTTGTGACCC 181 CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC CTAAACTTAA 241 GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG AATCGTTTCC 301 CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC CCCTTAGCTT 361 TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG AATCTCTCAA 421 GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 481 CCTCATTATC AAAGGATGGT AGGGAATATA ATTCGAGATG AAACATCAAA ATCACAGACA 541 GAGTGGCCGG GGAATAACAA GGCAAGAAGC TCTCTCTCAA GTTCACAAAT TTTCGCAGCA 601 TTAAAAACTC AAAGGTTTTG ATAGTGTCTT AGATATAAGC TCATTGACAT GATACTTTTG 661 CTGTGCACTC AAAATTTTGA AGTTTGTTAT TGTTGAATTA TTGTAATTTG TGGCACCTAT 721 TGAAAAATTT TAATCACAAA CATTTCTTTT TTAATAAAAG TAACATGAAT GATGGTTTGC 781 TCATTCATCA AAGTGTAAAA AAAAAAAA Predicted gene structure (within gDNA segment 53456 to 55745): Exon 1 54066 54558 ( 493 n); cDNA 1 493 ( 493 n); score: 1.000 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 54637 54669 ( 33 n); cDNA 494 526 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 (s: 0), Pa: 0.979 (s: 1.00) Exon 3 54765 55035 ( 271 n); cDNA 527 797 ( 271 n); score: 1.000 PPA cDNA 798 808 MATCH C09HBa0109D11.1+ SGN-E548165- 1.000 797 0.986 C PGS_C09HBa0109D11.1+_SGN-E548165- (54066 54558,54637 54669,54765 55035) Alignment (genomic DNA sequence = upper lines): ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT CCAACATTGT 54125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT CCAACATTGT 60 ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG CTCATATCGA 54185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG CTCATATCGA 120 AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT TTTGTGACCC 54245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT TTTGTGACCC 180 CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC CTAAACTTAA 54305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC CTAAACTTAA 240 GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG AATCGTTTCC 54365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG AATCGTTTCC 300 CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC CCCTTAGCTT 54425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC CCCTTAGCTT 360 TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG AATCTCTCAA 54485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG AATCTCTCAA 420 GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 54545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 480 CCTCATTATC AAAGTAAGTA GAAACAAACT CCTAAATATG TTCTGTTTTT TTGAGTATCT 54605 |||||||||| ||| CCTCATTATC AAA....... .......... .......... .......... .......... 493 AACTAACTTG ACACCACTAT GTATAATACA GGGATGGTAG GGAATATAAT TCGAGATGAA 54665 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGATGGTAG GGAATATAAT TCGAGATGAA 522 ACATGTACGT GCCTGTAATC ACAACAATGC TATATATTCC TTCTTCTAAT TTGACGCTTG 54725 |||| ACAT...... .......... .......... .......... .......... .......... 526 CTTTTGCTTA ATTGCTCCAT GTTGATTTCA AAATTGCAGC AAAATCACAG ACAGAGTGGC 54785 | |||||||||| |||||||||| .......... .......... .......... .........C AAAATCACAG ACAGAGTGGC 547 CGGGGAATAA CAAGGCAAGA AGCTCTCTCT CAAGTTCACA AATTTTCGCA GCATTAAAAA 54845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGGAATAA CAAGGCAAGA AGCTCTCTCT CAAGTTCACA AATTTTCGCA GCATTAAAAA 607 CTCAAAGGTT TTGATAGTGT CTTAGATATA AGCTCATTGA CATGATACTT TTGCTGTGCA 54905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAGGTT TTGATAGTGT CTTAGATATA AGCTCATTGA CATGATACTT TTGCTGTGCA 667 CTCAAAATTT TGAAGTTTGT TATTGTTGAA TTATTGTAAT TTGTGGCACC TATTGAAAAA 54965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAATTT TGAAGTTTGT TATTGTTGAA TTATTGTAAT TTGTGGCACC TATTGAAAAA 727 TTTTAATCAC AAACATTTCT TTTTTAATAA AAGTAACATG AATGATGGTT TGCTCATTCA 55025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAATCAC AAACATTTCT TTTTTAATAA AAGTAACATG AATGATGGTT TGCTCATTCA 787 TCAAAGTGTA 55035 |||||||||| TCAAAGTGTA 797 hqPGS_C09HBa0109D11.1+_SGN-E548165- (54066 54558,54637 54669,54765 55035) ******************************************************************************** EST sequence 56 +strand 514 n (File: SGN-E288588+) 1 TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT ACAATTGCCT TCAAATTTAA 61 ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG TTCCTTCATT GCAGGACTAC 121 CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC TGTTCAAATC AGAGATTGGT 181 GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA ACTGGTGAAC TTACCGATCT 241 CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA AACACTTGTT ATAAAAAGGT 301 GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA 361 AGTTGATTAG GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG 421 TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAAGGATGG TAGGGAATAT 481 AATTCGAGAT GAAACATCAA AATCACAGAC AGAG Predicted gene structure (within gDNA segment 53495 to 55449): Exon 1 54095 54558 ( 464 n); cDNA 1 464 ( 464 n); score: 1.000 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 54637 54669 ( 33 n); cDNA 465 497 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 (s: 0), Pa: 0.979 (s: 0) Exon 3 54765 54781 ( 17 n); cDNA 498 514 ( 17 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E288588+ 1.000 514 1.000 C PGS_C09HBa0109D11.1+_SGN-E288588+ (54095 54558,54637 54669,54765 54781) Alignment (genomic DNA sequence = upper lines): TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT ACAATTGCCT TCAAATTTAA 54154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT ACAATTGCCT TCAAATTTAA 60 ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG TTCCTTCATT GCAGGACTAC 54214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG TTCCTTCATT GCAGGACTAC 120 CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC TGTTCAAATC AGAGATTGGT 54274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC TGTTCAAATC AGAGATTGGT 180 GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA ACTGGTGAAC TTACCGATCT 54334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA ACTGGTGAAC TTACCGATCT 240 CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA AACACTTGTT ATAAAAAGGT 54394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA AACACTTGTT ATAAAAAGGT 300 GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA 54454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA 360 AGTTGATTAG GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG 54514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGATTAG GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG 420 TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAAGTAAGT AGAAACAAAC 54574 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAA...... .......... 464 TCCTAAATAT GTTCTGTTTT TTTGAGTATC TAACTAACTT GACACCACTA TGTATAATAC 54634 .......... .......... .......... .......... .......... .......... 464 AGGGATGGTA GGGAATATAA TTCGAGATGA AACATGTACG TGCCTGTAAT CACAACAATG 54694 |||||||| |||||||||| |||||||||| ||||| ..GGATGGTA GGGAATATAA TTCGAGATGA AACAT..... .......... .......... 497 CTATATATTC CTTCTTCTAA TTTGACGCTT GCTTTTGCTT AATTGCTCCA TGTTGATTTC 54754 .......... .......... .......... .......... .......... .......... 497 AAAATTGCAG CAAAATCACA GACAGAG 54781 |||||||||| ||||||| .......... CAAAATCACA GACAGAG 514 hqPGS_C09HBa0109D11.1+_SGN-E288588+ (54095 54558,54637 54669,54765 54781) ******************************************************************************** EST sequence 75 -strand 621 n (File: SGN-E251865-) 1 AGTATCTCCA ATTTTGTGAC CCCTATGAAT CTGTTCAAAT CAGAGATTGG TGCCTTGGAG 61 GTATCACGTT CCCTAAACTT AAGTTGTTGA AACTGGTGAA CTTACCGATC TCAAGGTGGG 121 ATGCCTCAGA GGAATCGTTT CCCCAGCTCG AAACACTTGT TATAAAAAGG TGTAACCACC 181 TCAAGGAGAT CCCCCTTAGC TTTGCTGATA TTCCAACACT GAAGCAGATT AAGTTGATTA 241 GGTGCGAGAA CGAATCTCTC AAGGATTCAG CTGTGGAGAT TAAGAAAGAC GTTGAAGAGA 301 ATGAAGGAAA CGACCGTATT GACCTCATTA TCAAAGGATG GTAGGGAATA TAATTCGAGA 361 TGAAACATCA AAATCACAGA CAGAGTGGCC GGGGAATAAC AAGGCAAGAA GCTCTCTCTC 421 AAGTTCACAA ATTTTCGCAG CATTAAAAAC TCAAAGGTTT TGATAGTGTC TTAGATATAA 481 GCTCATTGAC ATGATACTTT TGCTGTGCAC TCAAAATTTT GAAGTTTGTT ATTGTTGAAT 541 TATTGTAATT TGTCCCACCT ATTGCCAAAT TTTAATCACA AACATTTCTT TTTTAATAAA 601 AGTAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 53614 to 55761): Exon 1 54224 54558 ( 335 n); cDNA 1 335 ( 335 n); score: 1.000 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 54637 54669 ( 33 n); cDNA 336 368 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 (s: 0), Pa: 0.979 (s: 1.00) Exon 3 54765 55001 ( 237 n); cDNA 369 605 ( 237 n); score: 0.983 PPA cDNA 606 621 MATCH C09HBa0109D11.1+ SGN-E251865- 0.993 605 0.974 C PGS_C09HBa0109D11.1+_SGN-E251865- (54224 54558,54637 54669,54765 55001) Alignment (genomic DNA sequence = upper lines): AGTATCTCCA ATTTTGTGAC CCCTATGAAT CTGTTCAAAT CAGAGATTGG TGCCTTGGAG 54283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATCTCCA ATTTTGTGAC CCCTATGAAT CTGTTCAAAT CAGAGATTGG TGCCTTGGAG 60 GTATCACGTT CCCTAAACTT AAGTTGTTGA AACTGGTGAA CTTACCGATC TCAAGGTGGG 54343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCACGTT CCCTAAACTT AAGTTGTTGA AACTGGTGAA CTTACCGATC TCAAGGTGGG 120 ATGCCTCAGA GGAATCGTTT CCCCAGCTCG AAACACTTGT TATAAAAAGG TGTAACCACC 54403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTCAGA GGAATCGTTT CCCCAGCTCG AAACACTTGT TATAAAAAGG TGTAACCACC 180 TCAAGGAGAT CCCCCTTAGC TTTGCTGATA TTCCAACACT GAAGCAGATT AAGTTGATTA 54463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGGAGAT CCCCCTTAGC TTTGCTGATA TTCCAACACT GAAGCAGATT AAGTTGATTA 240 GGTGCGAGAA CGAATCTCTC AAGGATTCAG CTGTGGAGAT TAAGAAAGAC GTTGAAGAGA 54523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCGAGAA CGAATCTCTC AAGGATTCAG CTGTGGAGAT TAAGAAAGAC GTTGAAGAGA 300 ATGAAGGAAA CGACCGTATT GACCTCATTA TCAAAGTAAG TAGAAACAAA CTCCTAAATA 54583 |||||||||| |||||||||| |||||||||| ||||| ATGAAGGAAA CGACCGTATT GACCTCATTA TCAAA..... .......... .......... 335 TGTTCTGTTT TTTTGAGTAT CTAACTAACT TGACACCACT ATGTATAATA CAGGGATGGT 54643 ||||||| .......... .......... .......... .......... .......... ...GGATGGT 342 AGGGAATATA ATTCGAGATG AAACATGTAC GTGCCTGTAA TCACAACAAT GCTATATATT 54703 |||||||||| |||||||||| |||||| AGGGAATATA ATTCGAGATG AAACAT.... .......... .......... .......... 368 CCTTCTTCTA ATTTGACGCT TGCTTTTGCT TAATTGCTCC ATGTTGATTT CAAAATTGCA 54763 .......... .......... .......... .......... .......... .......... 368 GCAAAATCAC AGACAGAGTG GCCGGGGAAT AACAAGGCAA GAAGCTCTCT CTCAAGTTCA 54823 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .CAAAATCAC AGACAGAGTG GCCGGGGAAT AACAAGGCAA GAAGCTCTCT CTCAAGTTCA 427 CAAATTTTCG CAGCATTAAA AACTCAAAGG TTTTGATAGT GTCTTAGATA TAAGCTCATT 54883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTTTCG CAGCATTAAA AACTCAAAGG TTTTGATAGT GTCTTAGATA TAAGCTCATT 487 GACATGATAC TTTTGCTGTG CACTCAAAAT TTTGAAGTTT GTTATTGTTG AATTATTGTA 54943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATGATAC TTTTGCTGTG CACTCAAAAT TTTGAAGTTT GTTATTGTTG AATTATTGTA 547 ATTTGTGGCA CCTATTGAAA AATTTTAATC ACAAACATTT CTTTTTTAAT AAAAGTAA 55001 |||||| || ||||||| | |||||||||| |||||||||| |||||||||| |||||||| ATTTGTCCCA CCTATTGCCA AATTTTAATC ACAAACATTT CTTTTTTAAT AAAAGTAA 605 hqPGS_C09HBa0109D11.1+_SGN-E251865- (54224 54558,54637 54669,54765 55001) ******************************************************************************** EST sequence 79 -strand 714 n (File: SGN-E371689-) 1 GACCCCTATG AATCTGTTCA AATCAAAGAT TGGTGCCTTG GAGGTATCAC GTTCCCTAAA 61 CTTAAGTTGT TGAAACTGGT GAACTTACCG ATCTCAAGGT GGGATGCCTC AGAGGAATCG 121 TTTCCCCAGC TCGAAACACT TGTTATAAAA AGGTGTAACC ACCTCAAGGA GATCCCCCTT 181 AGCTTTGCTG ATATTCCAAC ACTGAAGCAG ATTAAGTTGA TTAGGTGCGA GAACGAATCT 241 CTCAAGGATT CAGCTGTGGA GATTAAGAAA GACGTTGAAG AGAATGAAGG AAACGACCGT 301 ATTGACCTCA TTATCAAAGG ATGGTAGGGA ATATAATTCG AGATGAAACA TGTACGTGCC 361 TGTAATCACA ACAATGCTAT ATATTCCTTC TTCTAATTTG ACGCTTGCTT TTGCTTAATT 421 GCTCCATGTT GATTTCAAAA TTGCAGCAAA ATCACAGACA GAGTGGCCGG GGAATAACAA 481 GGCAAGAAGC TCTCTCTCAA GTTCACAAAT TTTCGCAGCA TTAAAAACTC AAAGGTTTTG 541 ATAGTGTCTT AGATATAAGC TCATTGACAT GATACTTTTG CTGTGCACTC AAAATTTTGA 601 AGTTTGTTAT TGTTGAATTA TTGTAATTTG TGGCACCTAT TGAAAAATTT TAATCACAAA 661 CATTTCTTTT TTAATAAAAG TAACATGAAT GATGGATTGC TCATTAAAAA AAAA Predicted gene structure (within gDNA segment 53631 to 55803): Exon 1 54241 54558 ( 318 n); cDNA 1 318 ( 318 n); score: 0.997 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 54637 55030 ( 394 n); cDNA 319 712 ( 394 n); score: 0.990 MATCH C09HBa0109D11.1+ SGN-E371689- 0.993 712 0.997 C PGS_C09HBa0109D11.1+_SGN-E371689- (54241 54558,54637 55030) Alignment (genomic DNA sequence = upper lines): GACCCCTATG AATCTGTTCA AATCAGAGAT TGGTGCCTTG GAGGTATCAC GTTCCCTAAA 54300 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GACCCCTATG AATCTGTTCA AATCAAAGAT TGGTGCCTTG GAGGTATCAC GTTCCCTAAA 60 CTTAAGTTGT TGAAACTGGT GAACTTACCG ATCTCAAGGT GGGATGCCTC AGAGGAATCG 54360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAGTTGT TGAAACTGGT GAACTTACCG ATCTCAAGGT GGGATGCCTC AGAGGAATCG 120 TTTCCCCAGC TCGAAACACT TGTTATAAAA AGGTGTAACC ACCTCAAGGA GATCCCCCTT 54420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCCCAGC TCGAAACACT TGTTATAAAA AGGTGTAACC ACCTCAAGGA GATCCCCCTT 180 AGCTTTGCTG ATATTCCAAC ACTGAAGCAG ATTAAGTTGA TTAGGTGCGA GAACGAATCT 54480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTGCTG ATATTCCAAC ACTGAAGCAG ATTAAGTTGA TTAGGTGCGA GAACGAATCT 240 CTCAAGGATT CAGCTGTGGA GATTAAGAAA GACGTTGAAG AGAATGAAGG AAACGACCGT 54540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGGATT CAGCTGTGGA GATTAAGAAA GACGTTGAAG AGAATGAAGG AAACGACCGT 300 ATTGACCTCA TTATCAAAGT AAGTAGAAAC AAACTCCTAA ATATGTTCTG TTTTTTTGAG 54600 |||||||||| |||||||| ATTGACCTCA TTATCAAA.. .......... .......... .......... .......... 318 TATCTAACTA ACTTGACACC ACTATGTATA ATACAGGGAT GGTAGGGAAT ATAATTCGAG 54660 |||| |||||||||| |||||||||| .......... .......... .......... ......GGAT GGTAGGGAAT ATAATTCGAG 342 ATGAAACATG TACGTGCCTG TAATCACAAC AATGCTATAT ATTCCTTCTT CTAATTTGAC 54720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAACATG TACGTGCCTG TAATCACAAC AATGCTATAT ATTCCTTCTT CTAATTTGAC 402 GCTTGCTTTT GCTTAATTGC TCCATGTTGA TTTCAAAATT GCAGCAAAAT CACAGACAGA 54780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGCTTTT GCTTAATTGC TCCATGTTGA TTTCAAAATT GCAGCAAAAT CACAGACAGA 462 GTGGCCGGGG AATAACAAGG CAAGAAGCTC TCTCTCAAGT TCACAAATTT TCGCAGCATT 54840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCCGGGG AATAACAAGG CAAGAAGCTC TCTCTCAAGT TCACAAATTT TCGCAGCATT 522 AAAAACTCAA AGGTTTTGAT AGTGTCTTAG ATATAAGCTC ATTGACATGA TACTTTTGCT 54900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACTCAA AGGTTTTGAT AGTGTCTTAG ATATAAGCTC ATTGACATGA TACTTTTGCT 582 GTGCACTCAA AATTTTGAAG TTTGTTATTG TTGAATTATT GTAATTTGTG GCACCTATTG 54960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCACTCAA AATTTTGAAG TTTGTTATTG TTGAATTATT GTAATTTGTG GCACCTATTG 642 AAAAATTTTA ATCACAAACA TTTCTTTTTT AATAAAAGTA ACATGAATGA TGGTTTGCTC 55020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AAAAATTTTA ATCACAAACA TTTCTTTTTT AATAAAAGTA ACATGAATGA TGGATTGCTC 702 ATTCATCAAA 55030 ||| | ||| ATTAAAAAAA 712 hqPGS_C09HBa0109D11.1+_SGN-E371689- (54241 54558,54637 55030) ******************************************************************************** EST sequence 39 +strand 456 n (File: SGN-E300415+) 1 TACGGAGATC CCTCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA AGTTGATTAG 61 GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG TTGAAGAGAA 121 TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAAGGATGG TAGGGAATAT AATTCGAGAT 181 GAAACATCAA AATCACAGAC AGAGTGGCCG GGGAATAACA AGGCAAGAAG CTCTCTCTCA 241 AGTTCACAAA TTTTCGCAGC ATTAAAAACT CAAAGGTTTT GATAGTGTCT TAGATATAAG 301 CTCATTGACA TGATACTTTT GCTGTGCACT CAAGATTTTG AAGTTTGTTA TTGTTGAATT 361 ATTGTAATTT GTGGCACCTA TTGAAAAATT TTAATCACAA ACATTTCTTT TTTAATAAAA 421 GTAACATGAA TGATGGTTTG CTCATTAAAA AAAAAA Predicted gene structure (within gDNA segment 53688 to 55733): Exon 1 54408 54558 ( 151 n); cDNA 4 154 ( 151 n); score: 0.993 Intron 1 54559 54636 ( 78 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 54637 54669 ( 33 n); cDNA 155 187 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 (s: 0), Pa: 0.979 (s: 1.00) Exon 3 54765 55030 ( 266 n); cDNA 188 453 ( 266 n); score: 0.985 MATCH C09HBa0109D11.1+ SGN-E300415+ 0.988 450 0.987 C PGS_C09HBa0109D11.1+_SGN-E300415+ (54408 54558,54637 54669,54765 55030) Alignment (genomic DNA sequence = upper lines): GGAGATCCCC CTTAGCTTTG CTGATATTCC AACACTGAAG CAGATTAAGT TGATTAGGTG 54467 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATCCCT CTTAGCTTTG CTGATATTCC AACACTGAAG CAGATTAAGT TGATTAGGTG 63 CGAGAACGAA TCTCTCAAGG ATTCAGCTGT GGAGATTAAG AAAGACGTTG AAGAGAATGA 54527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAACGAA TCTCTCAAGG ATTCAGCTGT GGAGATTAAG AAAGACGTTG AAGAGAATGA 123 AGGAAACGAC CGTATTGACC TCATTATCAA AGTAAGTAGA AACAAACTCC TAAATATGTT 54587 |||||||||| |||||||||| |||||||||| | AGGAAACGAC CGTATTGACC TCATTATCAA A......... .......... .......... 154 CTGTTTTTTT GAGTATCTAA CTAACTTGAC ACCACTATGT ATAATACAGG GATGGTAGGG 54647 | |||||||||| .......... .......... .......... .......... .........G GATGGTAGGG 165 AATATAATTC GAGATGAAAC ATGTACGTGC CTGTAATCAC AACAATGCTA TATATTCCTT 54707 |||||||||| |||||||||| || AATATAATTC GAGATGAAAC AT........ .......... .......... .......... 187 CTTCTAATTT GACGCTTGCT TTTGCTTAAT TGCTCCATGT TGATTTCAAA ATTGCAGCAA 54767 ||| .......... .......... .......... .......... .......... .......CAA 190 AATCACAGAC AGAGTGGCCG GGGAATAACA AGGCAAGAAG CTCTCTCTCA AGTTCACAAA 54827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACAGAC AGAGTGGCCG GGGAATAACA AGGCAAGAAG CTCTCTCTCA AGTTCACAAA 250 TTTTCGCAGC ATTAAAAACT CAAAGGTTTT GATAGTGTCT TAGATATAAG CTCATTGACA 54887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGCAGC ATTAAAAACT CAAAGGTTTT GATAGTGTCT TAGATATAAG CTCATTGACA 310 TGATACTTTT GCTGTGCACT CAAAATTTTG AAGTTTGTTA TTGTTGAATT ATTGTAATTT 54947 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TGATACTTTT GCTGTGCACT CAAGATTTTG AAGTTTGTTA TTGTTGAATT ATTGTAATTT 370 GTGGCACCTA TTGAAAAATT TTAATCACAA ACATTTCTTT TTTAATAAAA GTAACATGAA 55007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCACCTA TTGAAAAATT TTAATCACAA ACATTTCTTT TTTAATAAAA GTAACATGAA 430 TGATGGTTTG CTCATTCATC AAA 55030 |||||||||| |||||| | ||| TGATGGTTTG CTCATTAAAA AAA 453 hqPGS_C09HBa0109D11.1+_SGN-E300415+ (54408 54558,54637 54669,54765 55030) ******************************************************************************** EST sequence 58 +strand 557 n (File: SGN-E302221+) 1 GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 61 TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 121 GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA TCAGTTATGT 181 TACGAGGGTG TTTTTGGGAA ATGGAACAAT TAAGGCATGT TGAGATCAAT GATGCTGAAT 241 TTGATAAGCA GGGGCTCTTT GAAGGATCCT CTAAATTGGA AAATTTGAGG ATATTAAAGA 301 ACATTGTTGG ATTTCCAATT GATAGGGCGG ATGTGTTATC AAGGAGGTGT CCTAATCTTC 361 AACAACTTCA AATCGAATTT GGATCTTTTG CAGAACCTCT TTGGCTCACA TTGGAGAATC 421 TTACCCAGCT TCAAATACTT GACCTTTCCT TTAGGTTGTT CCACATGCTA TCTGGGTTAC 481 AATTGCCTTC AAATTTAAAG ATGTTGGTAC TAAGAGACGC TGATCTAGAA AACCTAACTT 541 CCTTCTTTGC TGGACTA Predicted gene structure (within gDNA segment 51944 to 55345): Exon 1 53633 54213 ( 581 n); cDNA 1 557 ( 557 n); score: 0.757 MATCH C09HBa0109D11.1+ SGN-E302221+ 0.757 581 1.043 C PGS_C09HBa0109D11.1+_SGN-E302221+ (53633 54213) Alignment (genomic DNA sequence = upper lines): GACTTCTTAA GGTCTTGATT TTGACTTCCC ATGAAGTGGA TTATTTGTCG TCAGCTACAT 53692 |||||||||| ||||||| || |||| |||| ||||||| || ||| || ||||||||| GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 60 TCAAACCTCT AAATCACCTG AAATACCTCG CAGTTTGTGC AAATAAGTTT TACTTTCATC 53752 | ||||| || ||| ||||| || ||||||| ||| | || || || ||| || ||| ||| TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 120 CAGAATCACA TCTGCCCAAT CTTGAAACTT TAATCGTAAA TAATTGGGAA AATGAAGTAG 53812 ||||||||| ||||||| || |||||||||| |||| || || || | | | || ||| GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAA-T-GATA GAT-CAGTTA 177 AGTTACCAGC GTCTTTTTGG GAGATGGAAA AATTAAGGCA TGTTAAGATT TGGGATGCTA 53872 ||||| || || ||||||| || |||||| |||||||||| |||| |||| |||||| TGTTACGAGG GTGTTTTTGG GAAATGGAAC AATTAAGGCA TGTTGAGATC AATGATGCTG 237 AATTTGATTT GGAAGAGGAT AATCAGGGAT CCTCCGAATT GGAAAATTTG AGGATATTAC 53932 |||||||| | | | | | | |||| |||| |||| |||||||||| ||||||||| AATTTGATAA GCAGGGGCTC TTTGAAGGAT CCTCTAAATT GGAAAATTTG AGGATATTA- 296 AGTATGTAAA ATTTCCAATT GATGGAAGGG ATAGGGTGGA TATGTTATCA AGGAGGTGTC 53992 | | | | | | | ||| | || | |||||| ||| | |||||||| |||||||||| A--A-GAACA TTGTTGGATT --TCCAATTG ATAGGGCGGA TGTGTTATCA AGGAGGTGTC 351 CAAATCTTCA AAAACTGCAC ATCAACTTGG AATATCGGGG CAGTAATAAT TCGGCAGATT 54052 | |||||||| | |||| |||| | | ||| | || | | | | | ||||| CTAATCTTCA ACAACT---- -TCAA-ATCG AAT-T--TGG -A-T-CT--T T-TGCAGAAC 396 TATTTTGTCT CACATTAGAG AATCTTACTC AGCTTCAAAA TCTTCGCCTA ACTGTTGAGA 54112 |||| || |||||| ||| |||||||| | ||||||||| ||| ||| | || | CTCTTTGGCT CACATTGGAG AATCTTACCC AGCTTCAAAT ACTTGACCTT TCCTTTAGGT 456 GGTCCAACAT TGTATCTGGG TTACAATTGC CTTCAAATTT AAACAAGTTG GTACTAAGTG 54172 || | |||| |||||||| |||||||||| |||||||||| ||| | |||| |||||||| | TGTTCCACAT GCTATCTGGG TTACAATTGC CTTCAAATTT AAAGATGTTG GTACTAAGAG 516 GGGCTCATAT CGAAAACCTG AGTTCCTTCA TTGCAGGACT A 54213 ||| || | |||||||| | ||||||| |||| ||||| | ACGCTGATCT AGAAAACCTA ACTTCCTTCT TTGCTGGACT A 557 hqPGS_C09HBa0109D11.1+_SGN-E302221+ (53633 54213) ******************************************************************************** EST sequence 54 +strand 561 n (File: SGN-E247913+) 1 CAGCGTCTTT TTGGGAGATG GAAAAATTAA GGCATGTTAA GATTTGGGAT GCTAAATTTG 61 ATTTGGAAGA GGATAATCAG GGATCCTCCG AATTGGAAAA TTTGAGGATA TTACAGTATG 121 TAAAATTTCC AATTGATGGA AGGGATAGGG TGGATATGTT ATCAAGGAGG TGTCCAAATC 181 TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA GATTTATTTT 241 GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT GAGAGGTCCA 301 ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA AGTGGGGCTC 361 ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT CTCCAATTTT 421 GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC ACGTTCCCTA 481 AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC TCANAGGAAT 541 CGTTTCCCCA GCTCGAAACA C Predicted gene structure (within gDNA segment 53219 to 54989): Exon 1 53819 54379 ( 561 n); cDNA 1 561 ( 561 n); score: 0.998 MATCH C09HBa0109D11.1+ SGN-E247913+ 0.998 561 1.000 C PGS_C09HBa0109D11.1+_SGN-E247913+ (53819 54379) Alignment (genomic DNA sequence = upper lines): CAGCGTCTTT TTGGGAGATG GAAAAATTAA GGCATGTTAA GATTTGGGAT GCTAAATTTG 53878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCGTCTTT TTGGGAGATG GAAAAATTAA GGCATGTTAA GATTTGGGAT GCTAAATTTG 60 ATTTGGAAGA GGATAATCAG GGATCCTCCG AATTGGAAAA TTTGAGGATA TTACAGTATG 53938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGAAGA GGATAATCAG GGATCCTCCG AATTGGAAAA TTTGAGGATA TTACAGTATG 120 TAAAATTTCC AATTGATGGA AGGGATAGGG TGGATATGTT ATCAAGGAGG TGTCCAAATC 53998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTTCC AATTGATGGA AGGGATAGGG TGGATATGTT ATCAAGGAGG TGTCCAAATC 180 TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA GATTTATTTT 54058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA GATTTATTTT 240 GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT GAGAGGTCCA 54118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT GAGAGGTCCA 300 ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA AGTGGGGCTC 54178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA AGTGGGGCTC 360 ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT CTCCAATTTT 54238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT CTCCAATTTT 420 GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC ACGTTCCCTA 54298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC ACGTTCCCTA 480 AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC TCAGAGGAAT 54358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC TCANAGGAAT 540 CGTTTCCCCA GCTCGAAACA C 54379 |||||||||| |||||||||| | CGTTTCCCCA GCTCGAAACA C 561 hqPGS_C09HBa0109D11.1+_SGN-E247913+ (53819 54379) ******************************************************************************** EST sequence 50 +strand 513 n (File: SGN-E237622+) 1 TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 61 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 121 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 181 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 241 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 301 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 361 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 421 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 481 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAG Predicted gene structure (within gDNA segment 53389 to 55111): Exon 1 53989 54501 ( 513 n); cDNA 1 513 ( 513 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E237622+ 1.000 513 1.000 C PGS_C09HBa0109D11.1+_SGN-E237622+ (53989 54501) Alignment (genomic DNA sequence = upper lines): TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 54048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 60 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 54108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 120 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 54168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 180 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 54228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 240 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 54288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 300 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 54348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 360 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 54408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 420 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 54468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 480 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAG 54501 |||||||||| |||||||||| |||||||||| ||| GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAG 513 hqPGS_C09HBa0109D11.1+_SGN-E237622+ (53989 54501) ******************************************************************************** EST sequence 31 +strand 377 n (File: SGN-E203944+) 1 TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 61 ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 121 TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 181 TCAATCAGAA TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT 241 GCAGTTAGAT ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT 301 CGTTATAAGA TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC 361 ACTGAAACAG ATTAAGT Predicted gene structure (within gDNA segment 53025 to 56066): Exon 1 54075 54457 ( 383 n); cDNA 1 377 ( 377 n); score: 0.804 MATCH C09HBa0109D11.1+ SGN-E203944+ 0.804 383 1.016 C PGS_C09HBa0109D11.1+_SGN-E203944+ (54075 54457) Alignment (genomic DNA sequence = upper lines): TCTTACTCAG CTTCAAAATC TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT 54134 |||||| ||| ||||||| | || ||| | || | | | | |||| |||||||||| TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 60 ACAATTGCCT TCAAATTTAA ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG 54194 |||||||||| |||||||||| | | |||||| |||||| | ||| || | | ||||||| | ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 120 TTCCTTCATT GCAGGACTAC CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC 54254 ||||||| || || ||||||| |||||||||| |||||| ||| | | || |||| || TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA ---T-TAACA AATATGTATT 176 TGTTCAAATC AGAGATTGGT GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA 54314 | |||| ||| | |||| ||||||||| ||||||||| | |||||| | |||||||||| TTCCTCAATC AGA-A-TGGT GCCTTGGAGA TATCACGTTT CATAAACTCA AGTTGTTGAA 234 ACTGGTGAAC TTACCGATCT CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA 54374 ||||||| | ||| |||| |||||||||| || ||| ||| ||||| |||| ||| ||| || ACTGGTGCAG TTAGATATCT CAAGGTGGGA TGTCTCGGAG GAATCCTTTC CCCTGCTTGA 294 AACACTTGTT ATAAAAAGGT GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT 54434 |||| | ||| |||| | ||| | | |||| | |||| ||| ||| |||||| |||| ||| | AACAATCGTT ATAAGATGGT GCCATAACCT CGAGGAAATC CCCATTAGCT TTGCAGATGT 354 TCCAACACTG AAGCAGATTA AGT 54457 |||||||||| || ||||||| ||| TCCAACACTG AAACAGATTA AGT 377 hqPGS_C09HBa0109D11.1+_SGN-E203944+ (54075 54457) ******************************************************************************** EST sequence 77 -strand 358 n (File: SGN-E370461-) 1 TGCCTGTAAT AACAACAATG CTATATATTC ATTCTTATAA TTTGACGCAT GCTTTTGCTT 61 AATTGCTCCA TGTTGATTTA AAAATTGCAG CAAAATCACA GACAGAGTGG CCGGGGAATA 121 ACAAGGCAAG AAGCTCTCTC TCAAGTTCAC AAATTTTCGC AGCATTAAAA ACTCAAAGGT 181 TTTGATAGTG TCTTAGATAT AAGCTCATTG ACATGATACT TTTGCTGTGC ACTCAAAATT 241 TTGAAGTTTG TTATTGTTGA ATTATTGTAA TTTGTGGCAC CTATTGAAAA ATTTTAATCA 301 CAAACATTTC TTTTTTAATA AAAGTAACAT GAATGATGGT TTGCTCATTA AAAAAAAA Predicted gene structure (within gDNA segment 53624 to 55713): Exon 1 54675 55030 ( 356 n); cDNA 1 356 ( 356 n); score: 0.978 MATCH C09HBa0109D11.1+ SGN-E370461- 0.978 356 0.994 C PGS_C09HBa0109D11.1+_SGN-E370461- (54675 55030) Alignment (genomic DNA sequence = upper lines): TGCCTGTAAT CACAACAATG CTATATATTC CTTCTTCTAA TTTGACGCTT GCTTTTGCTT 54734 |||||||||| ||||||||| |||||||||| ||||| ||| |||||||| | |||||||||| TGCCTGTAAT AACAACAATG CTATATATTC ATTCTTATAA TTTGACGCAT GCTTTTGCTT 60 AATTGCTCCA TGTTGATTTC AAAATTGCAG CAAAATCACA GACAGAGTGG CCGGGGAATA 54794 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCTCCA TGTTGATTTA AAAATTGCAG CAAAATCACA GACAGAGTGG CCGGGGAATA 120 ACAAGGCAAG AAGCTCTCTC TCAAGTTCAC AAATTTTCGC AGCATTAAAA ACTCAAAGGT 54854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGCAAG AAGCTCTCTC TCAAGTTCAC AAATTTTCGC AGCATTAAAA ACTCAAAGGT 180 TTTGATAGTG TCTTAGATAT AAGCTCATTG ACATGATACT TTTGCTGTGC ACTCAAAATT 54914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATAGTG TCTTAGATAT AAGCTCATTG ACATGATACT TTTGCTGTGC ACTCAAAATT 240 TTGAAGTTTG TTATTGTTGA ATTATTGTAA TTTGTGGCAC CTATTGAAAA ATTTTAATCA 54974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGTTTG TTATTGTTGA ATTATTGTAA TTTGTGGCAC CTATTGAAAA ATTTTAATCA 300 CAAACATTTC TTTTTTAATA AAAGTAACAT GAATGATGGT TTGCTCATTC ATCAAA 55030 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | ||| CAAACATTTC TTTTTTAATA AAAGTAACAT GAATGATGGT TTGCTCATTA AAAAAA 356 hqPGS_C09HBa0109D11.1+_SGN-E370461- (54675 55030) ******************************************************************************** EST sequence 15 +strand 794 n (File: SGN-E539103+) 1 TCTTGATTAT CTTAGTAGAG CTGGAAATGA AGAAAATTTT TCTCGGTGAA CTAAAGGCTT 61 CCAAGTTTAC TCAATCAAGA ACTTTCAAGG ACAAGAAATT ACCAAAAGGA TTTTCTCATC 121 ATCTCCATAG TCTGTTGATG TATCTTAGAA ACAAAAAGCT TGAGAAATTT CCTAATAATA 181 ACTCTCCTCA AAATATTGAT ATAGCAATAG AGTTCTTGTT GGTTTTCCTT GATGCTGATG 241 TCGGAAATCA TGTAATTAAT GGTAACTGGT TGAATGAAGT TATGGAAAAG GTTGGAGCTA 301 TAGCGGGTGA TGTTCTATAT GTAATTCAAA AGCTTCTTCC TAGCTCTATA AAAAAAGATG 361 ACAATAGCAA AATAAGTCTT TGCTCAATAC AGATATGGGA GAAAACTAAA GATCTGAAGG 421 CACAAGTGGA GACGCACTAT AAATCCTTAA AATTCACTCC ATCGCAATTC CCCACTGTTG 481 GTGGATGGAG CTTTCTGGAT TCTCTTATGC GGAAACTGAA AGAGATGTCG AAATCTAAAT 541 CTTGTTTAGA TTTCCTGATG AAACCTCTTT TGGGGAATTT GGAGAAAGAG CTATCAGCTC 601 TTACATCCAT TTTAGAGAAG GATCTGTCAT CTTTATCATC CATTTTAAGC GATGTCGCCA 661 AGGTGCACCA TGAACATGAA ATTCTTCAAG ATCTTCACAG GCGTACTATC AATTGGGCAT 721 ATGAAGCGGA AGTTGCGATT GACTCTATTC TTGCTCAGTA TAATGTCTTT TGGCATATTT 781 TTTGCTCACT TCCT Predicted gene structure (within gDNA segment 57172 to 60978): Exon 1 58521 59305 ( 785 n); cDNA 3 793 ( 791 n); score: 0.810 MATCH C09HBa0109D11.1+ SGN-E539103+ 0.810 785 0.989 C PGS_C09HBa0109D11.1+_SGN-E539103+ (58521 59305) Alignment (genomic DNA sequence = upper lines): TTGATTGTGT TAGTGGAGCA GGAAATGAAG AAGATTTTTC TTAGTGAATT AAAGGCTTCA 58580 |||||| | | |||| |||| |||||||||| || ||||||| | ||||| | ||||||||| TTGATTATCT TAGTAGAGCT GGAAATGAAG AAAATTTTTC TCGGTGAACT AAAGGCTTCC 62 AAGTTCACCC AATCAAAAAC ATTCAAGGAC AAGAAATTAC CAAAAGGATT TTCACATCAT 58640 ||||| || | |||||| ||| ||||||||| |||||||||| |||||||||| ||| |||||| AAGTTTACTC AATCAAGAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCTCATCAT 122 CTCAACAGTC TGTTGGTGTA TCTCAGAAAC ACAAAGCTCA AGAACTTTCC TGATAATGTG 58700 ||| | |||| ||||| |||| ||| |||||| | |||||| |||| ||||| | ||||| CTCCATAGTC TGTTGATGTA TCTTAGAAAC AAAAAGCTTG AGAAATTTCC TAATAATAAC 182 TCTGCTCAAA ATATTGGTCT GTCAATAGAG CTTCTGTTGT TTTTTCTTGA TGCTGATCTT 58760 ||| |||||| |||||| | | |||||||| | ||||| |||| ||||| ||||||| | TCTCCTCAAA ATATTGATAT AGCAATAGAG TTCTTGTTGG TTTTCCTTGA TGCTGATGTC 242 TCAAATCATG TTATTAGTCG AAACTGGTTG AATGAGATCT TGGAAAACGT GGCAACCATA 58820 |||||||| | |||| | | ||||||||| ||||| | ||||||| || | | | ||| GGAAATCATG TAATTAATGG TAACTGGTTG AATGAAGTTA TGGAAAAGGT TGGAGCTATA 302 GCGGGTGATG TTCTATACGT AATTCAAAAG CTTCTTCCTA GATCAATAAG CAAAGACGAT 58880 |||||||||| ||||||| || |||||||||| |||||||||| | || |||| ||| | ||| GCGGGTGATG TTCTATATGT AATTCAAAAG CTTCTTCCTA GCTCTATAA- -AAA-AAGAT 359 GACACTAGCA AGATAAACAT TTACTCGATG CAGGTATTGG AGAAAACTAA AGATCTGAAG 58940 |||| ||||| | |||| | || ||| || ||| ||| || |||||||||| |||||||||| GACAATAGCA AAATAAGTCT TTGCTCAATA CAGATATGGG AGAAAACTAA AGATCTGAAG 419 GCACAAGTAG AGACGTACTA CAAATCCTTA ATATTTACTC CATCTCAGTT CCCTACCTCT 59000 |||||||| | ||||| |||| ||||||||| | ||| |||| |||| || || ||| || | GCACAAGTGG AGACGCACTA TAAATCCTTA AAATTCACTC CATCGCAATT CCCCACTGTT 479 GGTGGTTTGA CCTTTATGGA TTCTCTTTTA AGGAAATTAA ATGAGATGTC AAGATCTAAA 59060 ||||| | || |||| |||| ||||||| | ||||| | | | |||||||| | ||||||| GGTGGATGGA GCTTTCTGGA TTCTCTTATG CGGAAACTGA AAGAGATGTC GAAATCTAAA 539 TATGGTTTAG ATTTGCTGAT GAAACCTATT TACTGTAATT TGGAGAAAGA GCAATCAACT 59120 | | |||||| |||| ||||| ||||||| || | | |||| |||||||||| || |||| || TCTTGTTTAG ATTTCCTGAT GAAACCTCTT TTGGGGAATT TGGAGAAAGA GCTATCAGCT 599 CTTATATCCA ATTTAGAGAA GGAGTTGTCA TCTTTATCAT CCATTTTCAG AGATGTCACA 59180 |||| ||||| ||||||||| ||| ||||| |||||||||| ||||||| || |||||| | CTTACATCCA TTTTAGAGAA GGATCTGTCA TCTTTATCAT CCATTTTAAG CGATGTCGCC 659 AAGGTGCACC ATGAACAT-- -A------AA GATCTTCAAA GACGTACCAT CAATTTGGCA 59231 |||||||||| |||||||| | || |||||||| | | ||||| || ||||| |||| AAGGTGCACC ATGAACATGA AATTCTTCAA GATCTTCACA GGCGTACTAT CAATTGGGCA 719 TATGAAGCTG GGGTTTCCAT TGACTCTATT TGTGCTAAAT ATAATGTTTT TTGGCATTGT 59291 |||||||| | ||| | || |||||||||| |||| | | ||||||| || ||||||| | TATGAAGCGG AAGTTGCGAT TGACTCTATT CTTGCTCAGT ATAATGTCTT TTGGCATATT 779 TTTTGCTCAC TTCC 59305 |||||||||| |||| TTTTGCTCAC TTCC 793 hqPGS_C09HBa0109D11.1+_SGN-E539103+ (58521 59305) ******************************************************************************** EST sequence 21 +strand 377 n (File: SGN-E280953+) 1 CTTGATTATC TTAGTAGAGC TGGAAATGAA GAAAATTTTT CTCGGTGAAC TAAAGGCTTC 61 CAAGTTTACT CAATCAAGAA CTTTCAAGGA CAAGAAATTA CCAAAAGGAT TTTCTCATCA 121 TCTCCATAGT CTGGTGATGT ATCTTAGAAA CAAAAAGCTT GAGAAATTTC CTAATAATAA 181 CTCTCCTCAA AATATTGATA TAGCAATAGA GGTCTTGTTG GTTTTCCTTG ATGCTGATGT 241 CGGAAATCAT GTAATTAATG GTAACTGGTT GAATGAAGTT ATGGAAAAGG TTGGAGCTAT 301 AGCGGGTGAT GTTCTATATG TAATTCAAAA GCTTCTTCCT AGCTCTATTA AAAAAGATGA 361 CAATAGCCAA ATAAGTC Predicted gene structure (within gDNA segment 57182 to 59821): Exon 1 58521 58896 ( 376 n); cDNA 2 374 ( 373 n); score: 0.827 MATCH C09HBa0109D11.1+ SGN-E280953+ 0.827 376 0.997 C PGS_C09HBa0109D11.1+_SGN-E280953+ (58521 58896) Alignment (genomic DNA sequence = upper lines): TTGATTGTGT TAGTGGAGCA GGAAATGAAG AAGATTTTTC TTAGTGAATT AAAGGCTTCA 58580 |||||| | | |||| |||| |||||||||| || ||||||| | ||||| | ||||||||| TTGATTATCT TAGTAGAGCT GGAAATGAAG AAAATTTTTC TCGGTGAACT AAAGGCTTCC 61 AAGTTCACCC AATCAAAAAC ATTCAAGGAC AAGAAATTAC CAAAAGGATT TTCACATCAT 58640 ||||| || | |||||| ||| ||||||||| |||||||||| |||||||||| ||| |||||| AAGTTTACTC AATCAAGAAC TTTCAAGGAC AAGAAATTAC CAAAAGGATT TTCTCATCAT 121 CTCAACAGTC TGTTGGTGTA TCTCAGAAAC ACAAAGCTCA AGAACTTTCC TGATAATGTG 58700 ||| | |||| || || |||| ||| |||||| | |||||| |||| ||||| | ||||| CTCCATAGTC TGGTGATGTA TCTTAGAAAC AAAAAGCTTG AGAAATTTCC TAATAATAAC 181 TCTGCTCAAA ATATTGGTCT GTCAATAGAG CTTCTGTTGT TTTTTCTTGA TGCTGATCTT 58760 ||| |||||| |||||| | | |||||||| | ||||| |||| ||||| ||||||| | TCTCCTCAAA ATATTGATAT AGCAATAGAG GTCTTGTTGG TTTTCCTTGA TGCTGATGTC 241 TCAAATCATG TTATTAGTCG AAACTGGTTG AATGAGATCT TGGAAAACGT GGCAACCATA 58820 |||||||| | |||| | | ||||||||| ||||| | ||||||| || | | | ||| GGAAATCATG TAATTAATGG TAACTGGTTG AATGAAGTTA TGGAAAAGGT TGGAGCTATA 301 GCGGGTGATG TTCTATACGT AATTCAAAAG CTTCTTCCTA GATCAATAAG CAAAGACGAT 58880 |||||||||| ||||||| || |||||||||| |||||||||| | || || | ||| | ||| GCGGGTGATG TTCTATATGT AATTCAAAAG CTTCTTCCTA GCTCTATTA- -AAA-AAGAT 358 GACACTAGCA AGATAA 58896 |||| |||| | |||| GACAATAGCC AAATAA 374 hqPGS_C09HBa0109D11.1+_SGN-E280953+ (58521 58896) ******************************************************************************** EST sequence 52 +strand 160 n (File: SGN-E258561+) 1 AAACGTGGCA ACCATAGCGG GTGATGTTCT ATACGTAATT CAAAAGCTTC TTCCTAGATC 61 AATAAGCAAA GACGATGACA CTAGCAAGAT AAACATTTAC TCGATGCAGG TATTGGGAGA 121 AAACTAAAGA TCTNGAAGGC ACAAGTANGA GACGTACTAC Predicted gene structure (within gDNA segment 58205 to 59816): Exon 1 58805 58961 ( 157 n); cDNA 1 160 ( 160 n); score: 0.952 MATCH C09HBa0109D11.1+ SGN-E258561+ 0.952 157 0.981 C PGS_C09HBa0109D11.1+_SGN-E258561+ (58805 58961) Alignment (genomic DNA sequence = upper lines): AAACGTGGCA ACCATAGCGG GTGATGTTCT ATACGTAATT CAAAAGCTTC TTCCTAGATC 58864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACGTGGCA ACCATAGCGG GTGATGTTCT ATACGTAATT CAAAAGCTTC TTCCTAGATC 60 AATAAGCAAA GACGATGACA CTAGCAAGAT AAACATTTAC TCGATGCAGG TATT-GGAGA 58923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AATAAGCAAA GACGATGACA CTAGCAAGAT AAACATTTAC TCGATGCAGG TATTGGGAGA 120 AAACTAAAGA TCT-GAAGGC ACAAGTA-GA GACGTACTAC 58961 |||||||||| ||| |||||| ||||||| || |||||||||| AAACTAAAGA TCTNGAAGGC ACAAGTANGA GACGTACTAC 160 hqPGS_C09HBa0109D11.1+_SGN-E258561+ (58805 58961) ******************************************************************************** EST sequence 2 +strand 505 n (File: SGN-E300728+) 1 GACATATTAA TCCAGTGACT GATGAGGATA TAGTGGGTTT TGGGAATGAC ATAGAAAAAA 61 TGTTTCAGTA TCTGATTAGA GGTACAAATG ATCTAGACGT TGTCCCAATT GTAGGCATGG 121 GTGGACAAGG GAAAACGACA GTTGCTAGAA AGGTGTACAA TAGTGACAAC ATTGTTTCTC 181 ATTTTGATGT TCGAGCATGG TGCATCGTTT CCCAAACATA TAACCGGAGA AAGCTATTAC 241 AAGACATTTT GAGTCAAGTT ACCGGTTCCA AGGACAAGGG GTATGAGGAT GATATCCTTG 301 CTGATGAGTT GAGGAAAAGC TTAATGGGCA AGAGATATCT CATTGTCTTG GATGATATGT 361 GGGATTGTAT GGCATGGGAT GACTTAAGGC TTTCCTTTCC AGATTCCGGA AATAGAAGCA 421 GAATAGTAGT AACAACTCGA CTTGAGAAAG TGGGCGAACA AGTCAAGTGC CATACTGATC 481 CTTATTCTCT TCCGTTCCTC ACAAA Predicted gene structure (within gDNA segment 58189 to 60641): Exon 1 59421 59923 ( 503 n); cDNA 3 505 ( 503 n); score: 0.958 MATCH C09HBa0109D11.1+ SGN-E300728+ 0.958 503 0.996 C PGS_C09HBa0109D11.1+_SGN-E300728+ (59421 59923) Alignment (genomic DNA sequence = upper lines): CATAGCAATC CCATTACTGA TGAGGAGATA GTGGGTTTTG GGATTGACAA AGAAAAAATA 59480 |||| |||| | | ||||| |||||| ||| |||||||||| ||| ||||| ||||||||| CATATTAATC CAGTGACTGA TGAGGATATA GTGGGTTTTG GGAATGACAT AGAAAAAATG 62 ATTCAGTGTC TGATTAGAGG TACAAATGAT CTAGACGTTG TCCCAATTGT AGGCATGGGG 59540 |||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTCAGTATC TGATTAGAGG TACAAATGAT CTAGACGTTG TCCCAATTGT AGGCATGGGT 122 GGACAAGGGA AAACCACAAT TGCTAGAAAG GTGTACAATA GTGACAACAT TGTTTCTCAT 59600 |||||||||| |||| ||| | |||||||||| |||||||||| |||||||||| |||||||||| GGACAAGGGA AAACGACAGT TGCTAGAAAG GTGTACAATA GTGACAACAT TGTTTCTCAT 182 TTTGATGTTC GAGCATGGTG CATCGTTTCC CAAACATATA ACCGGAGAAA GCTATTACAA 59660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGTTC GAGCATGGTG CATCGTTTCC CAAACATATA ACCGGAGAAA GCTATTACAA 242 GAGATTTTGA GTCAAGTTAC CGGTTCCAAG GACAAGGGAT ATGAGGATGA TATCCTTGCT 59720 || ||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GACATTTTGA GTCAAGTTAC CGGTTCCAAG GACAAGGGGT ATGAGGATGA TATCCTTGCT 302 GATGAGTTGA GGAAAAGCTT AATGGGAAAG AGATATCTCA TTGTCTTGGA TGATATGTGG 59780 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GATGAGTTGA GGAAAAGCTT AATGGGCAAG AGATATCTCA TTGTCTTGGA TGATATGTGG 362 GATTGTATGG CATGGGATGA CTTAAGGCTT TCCTTTCCAG ATTTTGGAAA TAGAAGCAGA 59840 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| GATTGTATGG CATGGGATGA CTTAAGGCTT TCCTTTCCAG ATTCCGGAAA TAGAAGCAGA 422 ATAGTAGTAA CAACTCGACT TGAGAAAGTG GGCGAACAAG TCAAGTTCCA TACTGATCCT 59900 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ATAGTAGTAA CAACTCGACT TGAGAAAGTG GGCGAACAAG TCAAGTGCCA TACTGATCCT 482 TATTCTCTTC CATTCCTCAC AAA 59923 |||||||||| | |||||||| ||| TATTCTCTTC CGTTCCTCAC AAA 505 hqPGS_C09HBa0109D11.1+_SGN-E300728+ (59421 59923) ******************************************************************************** EST sequence 8 +strand 611 n (File: SGN-E371690+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 481 CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 541 AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 601 AAACCGAGTG A Predicted gene structure (within gDNA segment 59168 to 61828): Exon 1 59921 60507 ( 587 n); cDNA 1 611 ( 611 n); score: 0.760 MATCH C09HBa0109D11.1+ SGN-E371690+ 0.760 587 0.961 C PGS_C09HBa0109D11.1+_SGN-E371690+ (59921 60507) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGCAAAT TGTTGCAGAA AAAAGTTTTT CAAAAGGAAG ATTGTCCGCC 59980 |||||||||| ||||| ||| |||||||||| |||||| ||| |||||||||| ||| ||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTAAGTC AAGTAGTTGC AGAAAAATGC AAGGGACTGC CTCTAGTGAT 60040 |||||||||| ||||| |||| || |||||| |||||||||| || ||||||| | |||||| | TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAACAAG GAAACTGGAA GAATCTTGGT GGAATGAGGT 60100 |||||||||| |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACT ATCTTGATTG TCATTCAGAG CAATATAGTC GGGCTACTAT 60160 |||||||||| ||||||||| | ||| || | | | || || ||||||||| | ||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TTTGATAACT TAGCTGATTG TTTAAAACCT TGTCTTCTTT ATATGGGGAT 60220 |||||||||| | |||||| || | || || |||||| ||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTCCGGAG GATGCAAGCA TTAACGTGTC TGCATTGTTA AGTTTATGGT TAGCGGAA-G 60279 ||||| |||| ||||||| | || || || || |||| || ||| ||||| | |||||| | GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 A-CT-T-C-G TTCA--GAA- C------A-- --T--T--AA -A-TCTGCTG AAGATTACTT 60316 | | | | | || ||| | | | | || | | |||| ||| |||||| ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 420 GATGAATCTC ATTAGCAGTA ACGTGGTAAT GGTTTCAAAG AAAGAATATA ATGGCAAGAT 60376 |||| ||||| ||| |||| |||||||||| ||||||||| | | |||| |||| ||| | GATGGATCTC ATTCAGAGTA ACGTGGTAAT GGTTTCAAAT AGAAGGTATA ATGGTAAGGT 480 CAAATACTGT GAGGTTCATG ATGTAGTGCT TCACTTTTGC TTGGAGAAGA GTAGAGAAGA 60436 |||||||||| ||||||||| | |||||||| |||||||||| |||||||||| || |||||| CAAATACTGT CAGGTTCATG ACGTAGTGCT TCACTTTTGC TTGGAGAAGA GTCTAGAAGA 540 AAATTTTATG TTGGTTGCGA AGGGAAATCA TAGTCAATTT CAATCTTTTG TTTGGAAGCA 60496 ||| |||||| |||| | || |||| || | ||| || ||| ||| |||||| |||||| | AAAGTTTATG TTGGCAGTGA AGGGGCATGA TAGCCAGTTT CAACCTTTTG AATGGAAGGA 600 AAGTCGAGTG A 60507 || |||||| | AAACCGAGTG A 611 hqPGS_C09HBa0109D11.1+_SGN-E371690+ (59921 60507) ******************************************************************************** EST sequence 11 +strand 432 n (File: SGN-E280658+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 361 ATTTGTGCAG AGCATTGAAT CTGGGAGATT GTTGATGGAA GAGGCAGCTG AAGGTTACTT 421 GATGGATCTC AT Predicted gene structure (within gDNA segment 59168 to 63059): Exon 1 59921 60302 ( 382 n); cDNA 1 382 ( 382 n); score: 0.866 MATCH C09HBa0109D11.1+ SGN-E280658+ 0.866 382 0.884 C PGS_C09HBa0109D11.1+_SGN-E280658+ (59921 60302) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGCAAAT TGTTGCAGAA AAAAGTTTTT CAAAAGGAAG ATTGTCCGCC 59980 |||||||||| ||||| ||| |||||||||| |||||| ||| |||||||||| ||| ||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTAAGTC AAGTAGTTGC AGAAAAATGC AAGGGACTGC CTCTAGTGAT 60040 |||||||||| ||||| |||| || |||||| |||||||||| || ||||||| | |||||| | TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAACAAG GAAACTGGAA GAATCTTGGT GGAATGAGGT 60100 |||||||||| |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACT ATCTTGATTG TCATTCAGAG CAATATAGTC GGGCTACTAT 60160 |||||||||| ||||||||| | ||| || | | | || || ||||||||| | ||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTCAACTAT 240 GCAGTTGAGT TTTGATAACT TAGCTGATTG TTTAAAACCT TGTCTTCTTT ATATGGGGAT 60220 |||||||||| | |||||| || | || || |||||| ||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 GTTTCCGGAG GATGCAAGCA TTAACGTGTC TGCATTGTTA AGTTTATGGT TAGCGGAAGA 60280 ||||| |||| ||||||| | || || || || |||| || ||| ||||| | ||||||| GTTTCAGGAG GATGCAATAA TTCGAGTATC TGAATTGATA AGTCTATGGA TTGCGGAAGG 360 CTTCGTTCAG AACATTAAAT CT 60302 || || ||| | |||| ||| || ATTTGTGCAG AGCATTGAAT CT 382 hqPGS_C09HBa0109D11.1+_SGN-E280658+ (59921 60302) ******************************************************************************** EST sequence 6 +strand 301 n (File: SGN-E370462+) 1 AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 61 TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 121 TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 181 GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 241 GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 301 G Predicted gene structure (within gDNA segment 59168 to 61749): Exon 1 59921 60221 ( 301 n); cDNA 1 301 ( 301 n); score: 0.887 MATCH C09HBa0109D11.1+ SGN-E370462+ 0.887 301 1.000 C PGS_C09HBa0109D11.1+_SGN-E370462+ (59921 60221) Alignment (genomic DNA sequence = upper lines): AAAAGAAGAG AGTTGCAAAT TGTTGCAGAA AAAAGTTTTT CAAAAGGAAG ATTGTCCGCC 59980 |||||||||| ||||| ||| |||||||||| |||||| ||| |||||||||| ||| ||||| AAAAGAAGAG AGTTGTGAAT TGTTGCAGAA AAAAGTGTTT CAAAAGGAAG ATTTCCCGCC 60 TGAACTACAA GATGTAAGTC AAGTAGTTGC AGAAAAATGC AAGGGACTGC CTCTAGTGAT 60040 |||||||||| ||||| |||| || |||||| |||||||||| || ||||||| | |||||| | TGAACTACAA GATGTGAGTC GAGCAGTTGC AGAAAAATGC AAAGGACTGC CCCTAGTGGT 120 TGTCTTGGTA GCTGGAATAA TCAAAACAAG GAAACTGGAA GAATCTTGGT GGAATGAGGT 60100 |||||||||| |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| TGTCTTGGTA GCTGGAATAA TCAAAAAAAG GAAAATGGAA GAATCTTGGT GGAATGAGGT 180 GAAAGATTCT TTATTTGACT ATCTTGATTG TCATTCAGAG CAATATAGTC GGGCTACTAT 60160 |||||||||| ||||||||| | ||| || | | | || || ||||||||| ||||| GAAAGATTCT TTATTTGACC ACCTTAATCG TGAGTCGGAA GAATATAGTC TTTTAACTAT 240 GCAGTTGAGT TTTGATAACT TAGCTGATTG TTTAAAACCT TGTCTTCTTT ATATGGGGAT 60220 |||||||||| | |||||| || | || || |||||| ||| |||||||||| |||||||||| GCAGTTGAGT TACTATAACT TAACCGACTG TTTAAAGCCT TGTCTTCTTT ATATGGGGAT 300 G 60221 | G 301 hqPGS_C09HBa0109D11.1+_SGN-E370462+ (59921 60221) ******************************************************************************** EST sequence 59 +strand 524 n (File: SGN-E245684+) 1 ATTAACGTGT CTGCATTGTT AAGTTTATGG TTAGCGGAAG ACTTCGTTCA GAACATTAAA 61 TCTGCTGAAG ATTACTTGAT GAATCTCATT AGCAGTAACG TGGTAATGGT TTCAAAGAAA 121 GAATATAATG GCAAGATCAA ATACTGTGAG GTTCATGATG TAGTGCTTCA CTTTTGCTTG 181 GAGAAGAGTA GAGAAGAAAA TTTTATGTTG GTTGCGAAGG GAAATCATAG TCAATTTCAA 241 TCTTTTGTTT GGAAGCAAAG TCGAGTGAGC TTCAATTTGA TTGAAGAGAA TTCCAAGTTT 301 GCATCCAAAA CAAGGAAGTG TTCCCATCAA CCGTTGAGGT CACTGATAAC GAACGGAGCA 361 TCTTTTTATA TAATGTCCTT AAGTTCTTGG ATTCATAATT TGCGACTTCT TAAGGTCTTG 421 GTTTTGAGTT CCTATGAAGT TGACTATGTG AATTCAGCTA CACTGAAACC ACTTAATTAC 481 CTGAAGTACC TCGGAGTAAG GGCAACTACG TTCTATTTTG ATCG Predicted gene structure (within gDNA segment 59640 to 61373): Exon 1 60240 60763 ( 524 n); cDNA 1 524 ( 524 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E245684+ 1.000 524 1.000 C PGS_C09HBa0109D11.1+_SGN-E245684+ (60240 60763) Alignment (genomic DNA sequence = upper lines): ATTAACGTGT CTGCATTGTT AAGTTTATGG TTAGCGGAAG ACTTCGTTCA GAACATTAAA 60299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAACGTGT CTGCATTGTT AAGTTTATGG TTAGCGGAAG ACTTCGTTCA GAACATTAAA 60 TCTGCTGAAG ATTACTTGAT GAATCTCATT AGCAGTAACG TGGTAATGGT TTCAAAGAAA 60359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTGAAG ATTACTTGAT GAATCTCATT AGCAGTAACG TGGTAATGGT TTCAAAGAAA 120 GAATATAATG GCAAGATCAA ATACTGTGAG GTTCATGATG TAGTGCTTCA CTTTTGCTTG 60419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATATAATG GCAAGATCAA ATACTGTGAG GTTCATGATG TAGTGCTTCA CTTTTGCTTG 180 GAGAAGAGTA GAGAAGAAAA TTTTATGTTG GTTGCGAAGG GAAATCATAG TCAATTTCAA 60479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGAGTA GAGAAGAAAA TTTTATGTTG GTTGCGAAGG GAAATCATAG TCAATTTCAA 240 TCTTTTGTTT GGAAGCAAAG TCGAGTGAGC TTCAATTTGA TTGAAGAGAA TTCCAAGTTT 60539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGTTT GGAAGCAAAG TCGAGTGAGC TTCAATTTGA TTGAAGAGAA TTCCAAGTTT 300 GCATCCAAAA CAAGGAAGTG TTCCCATCAA CCGTTGAGGT CACTGATAAC GAACGGAGCA 60599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCCAAAA CAAGGAAGTG TTCCCATCAA CCGTTGAGGT CACTGATAAC GAACGGAGCA 360 TCTTTTTATA TAATGTCCTT AAGTTCTTGG ATTCATAATT TGCGACTTCT TAAGGTCTTG 60659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTTATA TAATGTCCTT AAGTTCTTGG ATTCATAATT TGCGACTTCT TAAGGTCTTG 420 GTTTTGAGTT CCTATGAAGT TGACTATGTG AATTCAGCTA CACTGAAACC ACTTAATTAC 60719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGAGTT CCTATGAAGT TGACTATGTG AATTCAGCTA CACTGAAACC ACTTAATTAC 480 CTGAAGTACC TCGGAGTAAG GGCAACTACG TTCTATTTTG ATCG 60763 |||||||||| |||||||||| |||||||||| |||||||||| |||| CTGAAGTACC TCGGAGTAAG GGCAACTACG TTCTATTTTG ATCG 524 hqPGS_C09HBa0109D11.1+_SGN-E245684+ (60240 60763) ******************************************************************************** EST sequence 80 -strand 714 n (File: SGN-E371689-) 1 GACCCCTATG AATCTGTTCA AATCAAAGAT TGGTGCCTTG GAGGTATCAC GTTCCCTAAA 61 CTTAAGTTGT TGAAACTGGT GAACTTACCG ATCTCAAGGT GGGATGCCTC AGAGGAATCG 121 TTTCCCCAGC TCGAAACACT TGTTATAAAA AGGTGTAACC ACCTCAAGGA GATCCCCCTT 181 AGCTTTGCTG ATATTCCAAC ACTGAAGCAG ATTAAGTTGA TTAGGTGCGA GAACGAATCT 241 CTCAAGGATT CAGCTGTGGA GATTAAGAAA GACGTTGAAG AGAATGAAGG AAACGACCGT 301 ATTGACCTCA TTATCAAAGG ATGGTAGGGA ATATAATTCG AGATGAAACA TGTACGTGCC 361 TGTAATCACA ACAATGCTAT ATATTCCTTC TTCTAATTTG ACGCTTGCTT TTGCTTAATT 421 GCTCCATGTT GATTTCAAAA TTGCAGCAAA ATCACAGACA GAGTGGCCGG GGAATAACAA 481 GGCAAGAAGC TCTCTCTCAA GTTCACAAAT TTTCGCAGCA TTAAAAACTC AAAGGTTTTG 541 ATAGTGTCTT AGATATAAGC TCATTGACAT GATACTTTTG CTGTGCACTC AAAATTTTGA 601 AGTTTGTTAT TGTTGAATTA TTGTAATTTG TGGCACCTAT TGAAAAATTT TAATCACAAA 661 CATTTCTTTT TTAATAAAAG TAACATGAAT GATGGATTGC TCATTAAAAA AAAA Predicted gene structure (within gDNA segment 60044 to 66089): Exon 1 61251 61538 ( 288 n); cDNA 31 318 ( 288 n); score: 0.865 Intron 1 61539 61610 ( 72 n); Pd: 0.999 (s: 0.98), Pa: 0.832 (s: 0.56) Exon 2 61611 61717 ( 107 n); cDNA 319 421 ( 103 n); score: 0.607 Intron 2 61718 61750 ( 33 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 61751 61784 ( 34 n); cDNA 422 455 ( 34 n); score: 0.735 Intron 3 61785 64499 (2715 n); Pd: 0.000 (s: 0), Pa: 0.801 (s: 0) Exon 4 64500 64511 ( 12 n); cDNA 456 466 ( 11 n); score: 0.833 MATCH C09HBa0109D11.1+ SGN-E371689- 0.795 441 0.618 C PGS_C09HBa0109D11.1+_SGN-E371689- (61251 61538,61611 61717,61751 61784,64500 64511) Alignment (genomic DNA sequence = upper lines): TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT GCAGTTAGAT 61310 |||||||||| ||| |||||| ||| | |||| || ||||||| |||||||||| | | ||| TGGTGCCTTG GAGGTATCAC GTTCCCTAAA CTTAAGTTGT TGAAACTGGT GAACTTACCG 90 ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT CGTTATAAGA 61370 |||||||||| |||||| ||| |||||||| ||||||| || | |||||| | ||||||| | ATCTCAAGGT GGGATGCCTC AGAGGAATCG TTTCCCCAGC TCGAAACACT TGTTATAAAA 150 TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC ACTGAAACAG 61430 |||| | ||||| |||| |||||| || |||||||| | || ||||||| |||||| ||| AGGTGTAACC ACCTCAAGGA GATCCCCCTT AGCTTTGCTG ATATTCCAAC ACTGAAGCAG 210 ATTAAGTTGG TTCACTGCAA GAACAAATCT CTGGAGGATT CAGCTGTGAG GATTAAGAAA 61490 ||||||||| || ||| | |||| ||||| || |||||| |||||||| |||||||||| ATTAAGTTGA TTAGGTGCGA GAACGAATCT CTCAAGGATT CAGCTGTGGA GATTAAGAAA 270 GATGTTGAAG AGAATGAAGG AAACGACCGT ATTGACCTCA TTATCAAAGT AAGTAGAAAT 61550 || ||||||| |||||||||| |||||||||| |||||||||| |||||||| GACGTTGAAG AGAATGAAGG AAACGACCGT ATTGACCTCA TTATCAAA.. .......... 318 AAACTCCGAT GTTTTGTTTT TGAGTATTTA CCTGCATCTA ACTTGACACC AATAATACAG 61610 .......... .......... .......... .......... .......... .......... 318 AAATAGTAGG GTCGTCCGGA AGCTGTGAGT CAATTATGTG CCTGTAATTA CAACAATGGT 61670 || ||||| | | ||| || || ||| |||||||| | |||||||| | GGATGGTAGG GAATATAATT CGAGATGAAA CATGTACGTG CCTGTAATCA CAACAATGCT 378 AAATATGGTT TCTGTTTTAT TTTTTTCGTG TTCCTTTCTC TAATCTAATG TTTGGTTTCA 61730 | |||| | ||| | | || || | || | || || |||| | ATATATTCCT TCT-TCTAAT TTGACGCTTG CT-TTTGCT- TAAT-TG... .......... 421 CTTAATTTCT CCACGTTTAT CTCAAATTAA ATTTGATAAT TGCAGCAAAA GTACAGCCAA 61790 ||| | | |||| | ||| |||||||||| || .......... .......... CTCCATGTTG ATTTCAAAAT TGCAGCAAAA TCAC...... 455 TTGTTGCAGC CACGCTCATG CTCAAGTATA TTGTGCGCCT AGAGCCGACA TCCCTGTCCT 61850 .......... .......... .......... .......... .......... .......... 455 TTTTCTGTAT GTTGTAGATG ATCTTTCACT GTGATTTCTT GTTGCCTTTT ATAAACATCA 61910 .......... .......... .......... .......... .......... .......... 455 TGCCTTTGTT ATGCAGCTTT ATTAATTTAC AACCTGTCAA AACATTGCTT CTTTGTTTTT 61970 .......... .......... .......... .......... .......... .......... 455 TGTAATATAA TAGTTGTTTC CCTTCCATCT TACACCTGCA AAATTCAATA AAGTATACAA 62030 .......... .......... .......... .......... .......... .......... 455 TTGAAAGCTG GCTGAATACA ACTCCCTAAT ATCAATCAAT AGAATACTGA ATGAAAGTTG 62090 .......... .......... .......... .......... .......... .......... 455 TTTTGATACA AAAGCTATCT ATATTGTTCC GACTCTTAAA AAATGTCACC AAGTAGTACT 62150 .......... .......... .......... .......... .......... .......... 455 TTTGGATAAC AACTTAGATA GTTATTTGTA CTTCCTCTCT TATTCCTTTG GTAGCCTACA 62210 .......... .......... .......... .......... .......... .......... 455 TCAAATCAGG TTGGTTAACA TGAACATTTA CATATCTATA AAACTCAGGC AGAAAAAAGT 62270 .......... .......... .......... .......... .......... .......... 455 AAAGCATAGA TTTACGAGGA TACAGATTCG AGTCTCTGGA AGATTTATCA CTTTGAGATG 62330 .......... .......... .......... .......... .......... .......... 455 ATCCAAGTTT TACGTAAATC AAGTATAGAG AGAGAACCGG ATAAATGCTC TACTTTATAG 62390 .......... .......... .......... .......... .......... .......... 455 AGTGTTTAGC GGCCATGGTG TTGGATGAAA AAGTACAACT TGAATATGCA ATTCTAAACC 62450 .......... .......... .......... .......... .......... .......... 455 ATACGAAAAC ATTGAAAAAT CGAGACTTGA AGTGATTTAG GAGTCTTGTG TGGAAGGGCT 62510 .......... .......... .......... .......... .......... .......... 455 CTATCGCACA AAGGATCAAA GGTACACAGG AGATAACAAA AAATTTCATC GCAAAAACAA 62570 .......... .......... .......... .......... .......... .......... 455 GTAAAACTTA GATATAAAGG TATGCACTAG CAAAATGAGT TCAGAATACG AGAAAACTAC 62630 .......... .......... .......... .......... .......... .......... 455 ATTGCCTGGT TCAGCCTTTA CTTCGAATTA GACTTGGGCC TTAACGGAGG CTTCTTCCAA 62690 .......... .......... .......... .......... .......... .......... 455 AGCAAGACGA GAAAGTATCC ATTATTCATC TATCCAGGAG GACAATGGTG GAGTCTCCGA 62750 .......... .......... .......... .......... .......... .......... 455 ATTTATCCAA GTTGCCCACA TGAATGCGTG CCTTTCGCCT TTAACCATAT CTTCAGCAGC 62810 .......... .......... .......... .......... .......... .......... 455 ACAGGACTCT AACTGCATCA TTTCATCAAT TGTCAGCTTT ACAGATATGG CTTCGATATT 62870 .......... .......... .......... .......... .......... .......... 455 TTCGTTGAGA TTGTCAATCT TGGTGGTACC GGGTATGGGG CATATGTCAT CTCCTTTGTG 62930 .......... .......... .......... .......... .......... .......... 455 AAGAATCCAA GCCAATGCAA GTTGTGATGT GGTGCATCCC TTTCTTGATG CTATTTCCTT 62990 .......... .......... .......... .......... .......... .......... 455 GACTTGCTCG TATATTTGCT TGTTGTGCTC AAAATTTTCA GGCTTGAACC TTGGTATATT 63050 .......... .......... .......... .......... .......... .......... 455 CTGGAAAAAA AAGCAAATGA CATCAGCCAT CCCGATTATA TGTATTGTTT TATACGTTAA 63110 .......... .......... .......... .......... .......... .......... 455 TTATAACGTG CTGTATCAGA AGAGATTTCG AGCGATAAGG ATGAGTTGGC AAACTGGATT 63170 .......... .......... .......... .......... .......... .......... 455 GAGAACCATG AGGTTCAAGT TCAAATAAAA AAGACCAGGT GATTTCTTTC TATCTGTCTA 63230 .......... .......... .......... .......... .......... .......... 455 TGCCTTGATG GATAGAGTTA CCCAATATCA ATGAACCGAA ACAGTTTTTT CTTTGATGAC 63290 .......... .......... .......... .......... .......... .......... 455 AACTTTGTTT AAACAACTCT ATTTTTGTAT CGTTCTAATT ATAAATATTG TGATTTCTAG 63350 .......... .......... .......... .......... .......... .......... 455 TTAAGTTTCT ATAATTCAGA TATACCAAAA ATTTGGATGC ATTGACCATG ACACTGTGAC 63410 .......... .......... .......... .......... .......... .......... 455 CCGCCATTCT TTGTGGGATA GAAGTACATA TTTTGTACAC TCTAAGCATG TTAATATATA 63470 .......... .......... .......... .......... .......... .......... 455 AAGAGTGTTT TTTTATGTCC GAATTTGCAC TAGAAGTTAA GACTCGTTGA TCTTGTATTC 63530 .......... .......... .......... .......... .......... .......... 455 AGATCGCCTT ATTCATAAGT AGCATGTGTT TCGTAGCCTT AATTCATCAA TACTAACGAA 63590 .......... .......... .......... .......... .......... .......... 455 ATCTCATCAA GATCAGTACT GGTAGATTGG TCGAGCTCAG TTAATCAGCA AGCCGTTGGT 63650 .......... .......... .......... .......... .......... .......... 455 TCTGAGTAGG AAAGTCACAA CGTTGATGCT AATATTGAGC TCTCCAAAGG AGAGGCTTTG 63710 .......... .......... .......... .......... .......... .......... 455 AGAGTTTCAC AAAAAGCCAA TGACACATGT TGCAGAATTT TGGTTTAAAA GGAAAATGAT 63770 .......... .......... .......... .......... .......... .......... 455 GGGTATGATA TGCAGCTAAT GGAGGTAAGT GGCTAAGTGC AAATGAAAAT CATGCAAGAT 63830 .......... .......... .......... .......... .......... .......... 455 CGAAGACAGT GCAATTAACT AGACCAACCT TGCGGAAGTC TCCCTCGGCC AAGCTCTCAA 63890 .......... .......... .......... .......... .......... .......... 455 TCAACTCTGG ACCTGCTGAG AAGAATCCTC GTCCGAGAGG ACTATACGGA ACAATTCCAA 63950 .......... .......... .......... .......... .......... .......... 455 TTCCTAATTC TCTGGAAAAG GCATTTACTC AGAAGAACCT TCAAACTATC TGAAAGAGTG 64010 .......... .......... .......... .......... .......... .......... 455 AACTCTAAGA GACACATTAC CTGCAAGTTG GAACTATTTC TTCCTCAAGA TCTCTGGTCC 64070 .......... .......... .......... .......... .......... .......... 455 ACAATGACCA CTCCATCTGA ACAGCTGTTA TTGGATGCAC CGCGTGTGCC CTTCTGATTG 64130 .......... .......... .......... .......... .......... .......... 455 TTGCTGCGCA AGCCTCAGAT AAACCTATAT ATTTGATTTT ACCCTCTTCA ACAAATTTCT 64190 .......... .......... .......... .......... .......... .......... 455 TCAGTTCTCC CATCTACACA CTATGCCACA CAATGTCACA AAAACAAAAT AATAACAATA 64250 .......... .......... .......... .......... .......... .......... 455 AGCACAATAA ACAAATTGCC AATTTGAGAT ACTCCATTGT CGAAATGTTT ATTCTTCTAT 64310 .......... .......... .......... .......... .......... .......... 455 TTGACTGGAG TATCATCTTT ATTGATACTC TTCCATGCAC CTATCATTTT CTCTCCCCAT 64370 .......... .......... .......... .......... .......... .......... 455 GCTTTGCATT ACTTGTTTAT AATAGAAGAT TAATTTTGTC TCGGTGATGC TTTCAAAAAC 64430 .......... .......... .......... .......... .......... .......... 455 AATAGTAGTA GCTAACAATG ATGTAACCTT TGTTTGTGAT TTCATCATAA AGCAATTCGT 64490 .......... .......... .......... .......... .......... .......... 455 TGGTGACAGA GCATAGAGTG G 64511 | | | |||||| | .........A G-ACAGAGTG G 466 hqPGS_C09HBa0109D11.1+_SGN-E371689- (61251 61538,61611 61717,61751 61784) ******************************************************************************** EST sequence 57 +strand 557 n (File: SGN-E302221+) 1 GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 61 TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 121 GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA TCAGTTATGT 181 TACGAGGGTG TTTTTGGGAA ATGGAACAAT TAAGGCATGT TGAGATCAAT GATGCTGAAT 241 TTGATAAGCA GGGGCTCTTT GAAGGATCCT CTAAATTGGA AAATTTGAGG ATATTAAAGA 301 ACATTGTTGG ATTTCCAATT GATAGGGCGG ATGTGTTATC AAGGAGGTGT CCTAATCTTC 361 AACAACTTCA AATCGAATTT GGATCTTTTG CAGAACCTCT TTGGCTCACA TTGGAGAATC 421 TTACCCAGCT TCAAATACTT GACCTTTCCT TTAGGTTGTT CCACATGCTA TCTGGGTTAC 481 AATTGCCTTC AAATTTAAAG ATGTTGGTAC TAAGAGACGC TGATCTAGAA AACCTAACTT 541 CCTTCTTTGC TGGACTA Predicted gene structure (within gDNA segment 60043 to 61809): Exon 1 60643 61199 ( 557 n); cDNA 1 557 ( 557 n); score: 0.998 MATCH C09HBa0109D11.1+ SGN-E302221+ 0.998 557 1.000 C PGS_C09HBa0109D11.1+_SGN-E302221+ (60643 61199) Alignment (genomic DNA sequence = upper lines): GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA CTATGTGAAT TCAGCTACAC 60702 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GACTTCTTAA GGTCTTGGTT TTGAGTTCCT ATGAAGTTGA GTATGTGAAT TCAGCTACAC 60 TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 60762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAACCACT TAATTACCTG AAGTACCTCG GAGTAAGGGC AACTACGTTC TATTTTGATC 120 GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA TCAGTTATGT 60822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATCACA TCTGCCCCAT CTTGAAACTT TAATTGTGAA GAATGATAGA TCAGTTATGT 180 TACGAGGGTG TTTTTGGGAA ATGGAACAAT TAAGGCATGT TGAGATCAAT GATGCTGAAT 60882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGAGGGTG TTTTTGGGAA ATGGAACAAT TAAGGCATGT TGAGATCAAT GATGCTGAAT 240 TTGATAAGCA GGGGCTCTTT GAAGGATCCT CTAAATTGGA AAATTTGAGG ATATTAAAGA 60942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATAAGCA GGGGCTCTTT GAAGGATCCT CTAAATTGGA AAATTTGAGG ATATTAAAGA 300 ACATTGTTGG ATTTCCAATT GATAGGGCGG ATGTGTTATC AAGGAGGTGT CCTAATCTTC 61002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGTTGG ATTTCCAATT GATAGGGCGG ATGTGTTATC AAGGAGGTGT CCTAATCTTC 360 AACAACTTCA AATCGAATTT GGATCTTTTG CAGAACCTCT TTGGCTCACA TTGGAGAATC 61062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACTTCA AATCGAATTT GGATCTTTTG CAGAACCTCT TTGGCTCACA TTGGAGAATC 420 TTACCCAGCT TCAAATACTT GACCTTTCCT TTAGGTTGTT CCACATGCTA TCTGGGTTAC 61122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCCAGCT TCAAATACTT GACCTTTCCT TTAGGTTGTT CCACATGCTA TCTGGGTTAC 480 AATTGCCTTC AAATTTAAAG ATGTTGGTAC TAAGAGACGC TGATCTAGAA AACCTAACTT 61182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCCTTC AAATTTAAAG ATGTTGGTAC TAAGAGACGC TGATCTAGAA AACCTAACTT 540 CCTTCTTTGC TGGACTA 61199 |||||||||| ||||||| CCTTCTTTGC TGGACTA 557 hqPGS_C09HBa0109D11.1+_SGN-E302221+ (60643 61199) ******************************************************************************** EST sequence 53 +strand 561 n (File: SGN-E247913+) 1 CAGCGTCTTT TTGGGAGATG GAAAAATTAA GGCATGTTAA GATTTGGGAT GCTAAATTTG 61 ATTTGGAAGA GGATAATCAG GGATCCTCCG AATTGGAAAA TTTGAGGATA TTACAGTATG 121 TAAAATTTCC AATTGATGGA AGGGATAGGG TGGATATGTT ATCAAGGAGG TGTCCAAATC 181 TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA GATTTATTTT 241 GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT GAGAGGTCCA 301 ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA AGTGGGGCTC 361 ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT CTCCAATTTT 421 GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC ACGTTCCCTA 481 AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC TCANAGGAAT 541 CGTTTCCCCA GCTCGAAACA C Predicted gene structure (within gDNA segment 57451 to 62266): Exon 1 60827 61358 ( 532 n); cDNA 2 560 ( 559 n); score: 0.672 MATCH C09HBa0109D11.1+ SGN-E247913+ 0.672 532 0.948 C PGS_C09HBa0109D11.1+_SGN-E247913+ (60827 61358) Alignment (genomic DNA sequence = upper lines): AGGGTGTTTT TGGGAAATGG AACAATTAAG GCATGTTGAG ATCAATGATG CTGAATTTGA 60886 || || |||| ||||| |||| || ||||||| ||||||| || || |||| || ||||||| AGCGTCTTTT TGGGAGATGG AAAAATTAAG GCATGTTAAG ATTTGGGATG CTAAATTTGA 61 TAAGCAGGGG CTCTTTGAAG GATCCTCTAA ATTGGAAAAT TTGAGGATAT TAAAG-A--- 60942 | | | | | | | | ||||||| | |||||||||| |||||||||| || || | TTTGGAAGAG GATAATCAGG GATCCTCCGA ATTGGAAAAT TTGAGGATAT TACAGTATGT 121 ACATTGTTGG ATT--TCCAA TTGATAGGGC GGATGTGTTA TCAAGGAGGT GTCCTAATCT 61000 | | | | ||| | || ||||||| |||| ||||| |||||||||| |||| ||||| AAAATTTCCA ATTGATGGAA GGGATAGGGT GGATATGTTA TCAAGGAGGT GTCCAAATCT 181 TCAACAACTT CA-A--ATC- --GAAT-T-- TGG-A-T-CT --TT-TGCAG AACCTCTTTG 61045 |||| |||| || | | | |||| | || | | | || |||| | |||| TCAAAAACTG CACATCAACT TGGAATATCG GGGCAGTAAT AATTCGGCAG ATTTATTTTG 241 GCTCACATTG GAGAATCTTA CCCAGCTTCA AATACTTGAC CTTTCCTTTA GGTTGTTCCA 61105 |||||||| |||||||||| | |||||||| || ||| | || | || | || | | TCTCACATTA GAGAATCTTA CTCAGCTTCA AAATCTTCGC CTAACTGTTG AGAGGTCCAA 301 CATGCTATCT GGGTTACAAT TGCCTTCAAA TTTAAAGATG TTGGTACTAA GAGACGCTGA 61165 ||| ||||| |||||||||| |||||||||| |||||| | | |||||||||| | | ||| | CATTGTATCT GGGTTACAAT TGCCTTCAAA TTTAAACAAG TTGGTACTAA GTGGGGCTCA 361 TCTAGAAAAC CTAACTTCCT TCTTTGCTGG ACTACCAAGC CTGGAGTATC TTCAA---T- 61221 | | |||||| || | ||||| || |||| || |||||||||| |||||||||| | ||| | TATCGAAAAC CTGAGTTCCT TCATTGCAGG ACTACCAAGC CTGGAGTATC TCCAATTTTG 421 TAACAAATAT GTATTTTCCT CAATCAGA-A -TGGTGCCTT GGAGATATCA CGTTTCATAA 61279 | || ||| | || | ||||||| | ||||||||| |||| ||||| |||| | ||| TGACCCCTAT GAATCTGTTC AAATCAGAGA TTGGTGCCTT GGAGGTATCA CGTTCCCTAA 481 ACTCAAGTTG TTGAAACTGG TGCAGTTAGA TATCTCAAGG TGGGATGTCT CGGAGGAATC 61339 ||| |||||| |||||||||| || | ||| ||||||||| ||||||| || | ||||||| ACTTAAGTTG TTGAAACTGG TGAACTTACC GATCTCAAGG TGGGATGCCT CANAGGAATC 541 CTTTCCCCTG CTTGAAACA 61358 ||||||| | || |||||| GTTTCCCCAG CTCGAAACA 560 hqPGS_C09HBa0109D11.1+_SGN-E247913+ (60827 61358) ******************************************************************************** EST sequence 47 +strand 642 n (File: SGN-E368738+) 1 TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 61 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 121 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 181 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 241 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 301 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 361 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 421 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 481 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAGATTAAGA AAGACGTTGA AGAGAATGAA 541 GGAAACGACC GTATTGACCT CATTATCAAA GGATGGTAGG GAATATAATT CGAGATGAAA 601 CATCAAAATC ACAGACAGAG TGGCCGGGGA ATAACAAGGC AA Predicted gene structure (within gDNA segment 59151 to 62859): Exon 1 61042 61538 ( 497 n); cDNA 68 570 ( 503 n); score: 0.805 MATCH C09HBa0109D11.1+ SGN-E368738+ 0.805 497 0.774 C PGS_C09HBa0109D11.1+_SGN-E368738+ (61042 61538) Alignment (genomic DNA sequence = upper lines): TTTGGCTCAC ATTGGAGAAT CTTACCCAGC TTCAAATACT TGACCTTTCC TTTAGGTTGT 61101 |||| ||||| ||| |||||| ||||| |||| |||||| || | ||| | || | || TTTGTCTCAC ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT 127 TCCACATGCT ATCTGGGTTA CAATTGCCTT CAAATTTAAA GATGTTGGTA CTAAGAGACG 61161 | |||| | |||||||||| |||||||||| |||||||||| | ||||||| ||||| | | CCAACATTGT ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG 187 CTGATCTAGA AAACCTAACT TCCTTCTTTG CTGGACTACC AAGCCTGGAG TATCTTCAA- 61220 || || | || |||||| | | |||||| ||| | |||||||| |||||||||| ||||| ||| CTCATATCGA AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT 247 --T-TAACAA ATATGTATTT TCCTCAATCA GA-A-TGGTG CCTTGGAGAT ATCACGTTTC 61275 | | || |||| || | ||||| || | ||||| |||||||| | |||||||| | TTTGTGACCC CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC 307 ATAAACTCAA GTTGTTGAAA CTGGTGCAGT TAGATATCTC AAGGTGGGAT GTCTCGGAGG 61335 |||||| || |||||||||| |||||| | | || ||||| |||||||||| | ||| |||| CTAAACTTAA GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG 367 AATCCTTTCC CCTGCTTGAA ACAATCGTTA TAAGATGGTG CCATAACCTC GAGGAAATCC 61395 |||| ||||| || ||| ||| ||| | |||| ||| | |||| | ||||| |||| |||| AATCGTTTCC CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC 427 CCATTAGCTT TGCAGATGTT CCAACACTGA AACAGATTAA GTTGGTTCAC TGCAAGAACA 61455 || ||||||| ||| ||| || |||||||||| | |||||||| |||| || ||| ||||| CCCTTAGCTT TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG 487 AATCTCTGGA GGATTCAGCT GTGAGGATTA AGAAAGATGT TGAAGAGAAT GAAGGAAACG 61515 ||||||| | |||||||||| ||| ||||| ||||||| || |||||||||| |||||||||| AATCTCTCAA GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG 547 ACCGTATTGA CCTCATTATC AAA 61538 |||||||||| |||||||||| ||| ACCGTATTGA CCTCATTATC AAA 570 hqPGS_C09HBa0109D11.1+_SGN-E368738+ (61042 61538) ******************************************************************************** EST sequence 49 +strand 513 n (File: SGN-E237622+) 1 TGTCCAAATC TTCAAAAACT GCACATCAAC TTGGAATATC GGGGCAGTAA TAATTCGGCA 61 GATTTATTTT GTCTCACATT AGAGAATCTT ACTCAGCTTC AAAATCTTCG CCTAACTGTT 121 GAGAGGTCCA ACATTGTATC TGGGTTACAA TTGCCTTCAA ATTTAAACAA GTTGGTACTA 181 AGTGGGGCTC ATATCGAAAA CCTGAGTTCC TTCATTGCAG GACTACCAAG CCTGGAGTAT 241 CTCCAATTTT GTGACCCCTA TGAATCTGTT CAAATCAGAG ATTGGTGCCT TGGAGGTATC 301 ACGTTCCCTA AACTTAAGTT GTTGAAACTG GTGAACTTAC CGATCTCAAG GTGGGATGCC 361 TCAGAGGAAT CGTTTCCCCA GCTCGAAACA CTTGTTATAA AAAGGTGTAA CCACCTCAAG 421 GAGATCCCCC TTAGCTTTGC TGATATTCCA ACACTGAAGC AGATTAAGTT GATTAGGTGC 481 GAGAACGAAT CTCTCAAGGA TTCAGCTGTG GAG Predicted gene structure (within gDNA segment 59151 to 63486): Exon 1 61042 61478 ( 437 n); cDNA 68 510 ( 443 n); score: 0.785 MATCH C09HBa0109D11.1+ SGN-E237622+ 0.785 437 0.852 C PGS_C09HBa0109D11.1+_SGN-E237622+ (61042 61478) Alignment (genomic DNA sequence = upper lines): TTTGGCTCAC ATTGGAGAAT CTTACCCAGC TTCAAATACT TGACCTTTCC TTTAGGTTGT 61101 |||| ||||| ||| |||||| ||||| |||| |||||| || | ||| | || | || TTTGTCTCAC ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT 127 TCCACATGCT ATCTGGGTTA CAATTGCCTT CAAATTTAAA GATGTTGGTA CTAAGAGACG 61161 | |||| | |||||||||| |||||||||| |||||||||| | ||||||| ||||| | | CCAACATTGT ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG 187 CTGATCTAGA AAACCTAACT TCCTTCTTTG CTGGACTACC AAGCCTGGAG TATCTTCAA- 61220 || || | || |||||| | | |||||| ||| | |||||||| |||||||||| ||||| ||| CTCATATCGA AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT 247 --T-TAACAA ATATGTATTT TCCTCAATCA GA-A-TGGTG CCTTGGAGAT ATCACGTTTC 61275 | | || |||| || | ||||| || | ||||| |||||||| | |||||||| | TTTGTGACCC CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC 307 ATAAACTCAA GTTGTTGAAA CTGGTGCAGT TAGATATCTC AAGGTGGGAT GTCTCGGAGG 61335 |||||| || |||||||||| |||||| | | || ||||| |||||||||| | ||| |||| CTAAACTTAA GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG 367 AATCCTTTCC CCTGCTTGAA ACAATCGTTA TAAGATGGTG CCATAACCTC GAGGAAATCC 61395 |||| ||||| || ||| ||| ||| | |||| ||| | |||| | ||||| |||| |||| AATCGTTTCC CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC 427 CCATTAGCTT TGCAGATGTT CCAACACTGA AACAGATTAA GTTGGTTCAC TGCAAGAACA 61455 || ||||||| ||| ||| || |||||||||| | |||||||| |||| || ||| ||||| CCCTTAGCTT TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG 487 AATCTCTGGA GGATTCAGCT GTG 61478 ||||||| | |||||||||| ||| AATCTCTCAA GGATTCAGCT GTG 510 hqPGS_C09HBa0109D11.1+_SGN-E237622+ (61042 61478) ******************************************************************************** EST sequence 91 -strand 808 n (File: SGN-E548165-) 1 ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT CCAACATTGT 61 ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG CTCATATCGA 121 AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT TTTGTGACCC 181 CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC CTAAACTTAA 241 GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG AATCGTTTCC 301 CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC CCCTTAGCTT 361 TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG AATCTCTCAA 421 GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 481 CCTCATTATC AAAGGATGGT AGGGAATATA ATTCGAGATG AAACATCAAA ATCACAGACA 541 GAGTGGCCGG GGAATAACAA GGCAAGAAGC TCTCTCTCAA GTTCACAAAT TTTCGCAGCA 601 TTAAAAACTC AAAGGTTTTG ATAGTGTCTT AGATATAAGC TCATTGACAT GATACTTTTG 661 CTGTGCACTC AAAATTTTGA AGTTTGTTAT TGTTGAATTA TTGTAATTTG TGGCACCTAT 721 TGAAAAATTT TAATCACAAA CATTTCTTTT TTAATAAAAG TAACATGAAT GATGGTTTGC 781 TCATTCATCA AAGTGTAAAA AAAAAAAA Predicted gene structure (within gDNA segment 59911 to 65279): Exon 1 61052 61538 ( 487 n); cDNA 1 493 ( 493 n); score: 0.803 Intron 1 61539 61610 ( 72 n); Pd: 0.999 (s: 0.98), Pa: 0.832 (s: 0) Exon 2 61611 61623 ( 13 n); cDNA 494 506 ( 13 n); score: 0.615 Intron 2 61624 61816 ( 193 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 61817 61822 ( 6 n); cDNA 507 512 ( 6 n); score: 0.833 Intron 3 61823 62204 ( 382 n); Pd: 0.373 (s: 0), Pa: 0.293 (s: 0) Exon 4 62205 62219 ( 15 n); cDNA 513 526 ( 14 n); score: 0.600 Intron 4 62220 63785 (1566 n); Pd: 0.900 (s: 0), Pa: 0.990 (s: 0) Exon 5 63786 63794 ( 9 n); cDNA 527 535 ( 9 n); score: 0.444 Intron 5 63795 64499 ( 705 n); Pd: 0.761 (s: 0), Pa: 0.801 (s: 0) Exon 6 64500 64511 ( 12 n); cDNA 536 546 ( 11 n); score: 0.833 PPA cDNA 797 808 MATCH C09HBa0109D11.1+ SGN-E548165- 0.803 542 0.671 C PGS_C09HBa0109D11.1+_SGN-E548165- (61052 61538,61611 61623,61817 61822,62205 62219,63786 63794,64500 64511) Alignment (genomic DNA sequence = upper lines): ATTGGAGAAT CTTACCCAGC TTCAAATACT TGACCTTTCC TTTAGGTTGT TCCACATGCT 61111 ||| |||||| ||||| |||| |||||| || | ||| | || | || | |||| | ATTAGAGAAT CTTACTCAGC TTCAAAATCT TCGCCTAACT GTTGAGAGGT CCAACATTGT 60 ATCTGGGTTA CAATTGCCTT CAAATTTAAA GATGTTGGTA CTAAGAGACG CTGATCTAGA 61171 |||||||||| |||||||||| |||||||||| | ||||||| ||||| | | || || | || ATCTGGGTTA CAATTGCCTT CAAATTTAAA CAAGTTGGTA CTAAGTGGGG CTCATATCGA 120 AAACCTAACT TCCTTCTTTG CTGGACTACC AAGCCTGGAG TATCTTCAA- --T-TAACAA 61227 |||||| | | |||||| ||| | |||||||| |||||||||| ||||| ||| | | || AAACCTGAGT TCCTTCATTG CAGGACTACC AAGCCTGGAG TATCTCCAAT TTTGTGACCC 180 ATATGTATTT TCCTCAATCA GA-A-TGGTG CCTTGGAGAT ATCACGTTTC ATAAACTCAA 61285 |||| || | ||||| || | ||||| |||||||| | |||||||| | |||||| || CTATGAATCT GTTCAAATCA GAGATTGGTG CCTTGGAGGT ATCACGTTCC CTAAACTTAA 240 GTTGTTGAAA CTGGTGCAGT TAGATATCTC AAGGTGGGAT GTCTCGGAGG AATCCTTTCC 61345 |||||||||| |||||| | | || ||||| |||||||||| | ||| |||| |||| ||||| GTTGTTGAAA CTGGTGAACT TACCGATCTC AAGGTGGGAT GCCTCAGAGG AATCGTTTCC 300 CCTGCTTGAA ACAATCGTTA TAAGATGGTG CCATAACCTC GAGGAAATCC CCATTAGCTT 61405 || ||| ||| ||| | |||| ||| | |||| | ||||| |||| |||| || ||||||| CCAGCTCGAA ACACTTGTTA TAAAAAGGTG TAACCACCTC AAGGAGATCC CCCTTAGCTT 360 TGCAGATGTT CCAACACTGA AACAGATTAA GTTGGTTCAC TGCAAGAACA AATCTCTGGA 61465 ||| ||| || |||||||||| | |||||||| |||| || ||| ||||| ||||||| | TGCTGATATT CCAACACTGA AGCAGATTAA GTTGATTAGG TGCGAGAACG AATCTCTCAA 420 GGATTCAGCT GTGAGGATTA AGAAAGATGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 61525 |||||||||| ||| ||||| ||||||| || |||||||||| |||||||||| |||||||||| GGATTCAGCT GTGGAGATTA AGAAAGACGT TGAAGAGAAT GAAGGAAACG ACCGTATTGA 480 CCTCATTATC AAAGTAAGTA GAAATAAACT CCGATGTTTT GTTTTTGAGT ATTTACCTGC 61585 |||||||||| ||| CCTCATTATC AAA....... .......... .......... .......... .......... 493 ATCTAACTTG ACACCAATAA TACAGAAATA GTAGGGTCGT CCGGAAGCTG TGAGTCAATT 61645 || |||||| .......... .......... .....GGATG GTAGGGAA.. .......... .......... 506 ATGTGCCTGT AATTACAACA ATGGTAAATA TGGTTTCTGT TTTATTTTTT TCGTGTTCCT 61705 .......... .......... .......... .......... .......... .......... 506 TTCTCTAATC TAATGTTTGG TTTCACTTAA TTTCTCCACG TTTATCTCAA ATTAAATTTG 61765 .......... .......... .......... .......... .......... .......... 506 ATAATTGCAG CAAAAGTACA GCCAATTGTT GCAGCCACGC TCATGCTCAA GTATATTGTG 61825 |||| | .......... .......... .......... .......... .......... .TATAAT... 512 CGCCTAGAGC CGACATCCCT GTCCTTTTTC TGTATGTTGT AGATGATCTT TCACTGTGAT 61885 .......... .......... .......... .......... .......... .......... 512 TTCTTGTTGC CTTTTATAAA CATCATGCCT TTGTTATGCA GCTTTATTAA TTTACAACCT 61945 .......... .......... .......... .......... .......... .......... 512 GTCAAAACAT TGCTTCTTTG TTTTTTGTAA TATAATAGTT GTTTCCCTTC CATCTTACAC 62005 .......... .......... .......... .......... .......... .......... 512 CTGCAAAATT CAATAAAGTA TACAATTGAA AGCTGGCTGA ATACAACTCC CTAATATCAA 62065 .......... .......... .......... .......... .......... .......... 512 TCAATAGAAT ACTGAATGAA AGTTGTTTTG ATACAAAAGC TATCTATATT GTTCCGACTC 62125 .......... .......... .......... .......... .......... .......... 512 TTAAAAAATG TCACCAAGTA GTACTTTTGG ATAACAACTT AGATAGTTAT TTGTACTTCC 62185 .......... .......... .......... .......... .......... .......... 512 TCTCTTATTC CTTTGGTAGC CTACATCAAA TCAGGTTGGT TAACATGAAC ATTTACATAT 62245 | | || ||| || .......... .........T CGAGATGAAA -CAT...... .......... .......... 526 CTATAAAACT CAGGCAGAAA AAAGTAAAGC ATAGATTTAC GAGGATACAG ATTCGAGTCT 62305 .......... .......... .......... .......... .......... .......... 526 CTGGAAGATT TATCACTTTG AGATGATCCA AGTTTTACGT AAATCAAGTA TAGAGAGAGA 62365 .......... .......... .......... .......... .......... .......... 526 ACCGGATAAA TGCTCTACTT TATAGAGTGT TTAGCGGCCA TGGTGTTGGA TGAAAAAGTA 62425 .......... .......... .......... .......... .......... .......... 526 CAACTTGAAT ATGCAATTCT AAACCATACG AAAACATTGA AAAATCGAGA CTTGAAGTGA 62485 .......... .......... .......... .......... .......... .......... 526 TTTAGGAGTC TTGTGTGGAA GGGCTCTATC GCACAAAGGA TCAAAGGTAC ACAGGAGATA 62545 .......... .......... .......... .......... .......... .......... 526 ACAAAAAATT TCATCGCAAA AACAAGTAAA ACTTAGATAT AAAGGTATGC ACTAGCAAAA 62605 .......... .......... .......... .......... .......... .......... 526 TGAGTTCAGA ATACGAGAAA ACTACATTGC CTGGTTCAGC CTTTACTTCG AATTAGACTT 62665 .......... .......... .......... .......... .......... .......... 526 GGGCCTTAAC GGAGGCTTCT TCCAAAGCAA GACGAGAAAG TATCCATTAT TCATCTATCC 62725 .......... .......... .......... .......... .......... .......... 526 AGGAGGACAA TGGTGGAGTC TCCGAATTTA TCCAAGTTGC CCACATGAAT GCGTGCCTTT 62785 .......... .......... .......... .......... .......... .......... 526 CGCCTTTAAC CATATCTTCA GCAGCACAGG ACTCTAACTG CATCATTTCA TCAATTGTCA 62845 .......... .......... .......... .......... .......... .......... 526 GCTTTACAGA TATGGCTTCG ATATTTTCGT TGAGATTGTC AATCTTGGTG GTACCGGGTA 62905 .......... .......... .......... .......... .......... .......... 526 TGGGGCATAT GTCATCTCCT TTGTGAAGAA TCCAAGCCAA TGCAAGTTGT GATGTGGTGC 62965 .......... .......... .......... .......... .......... .......... 526 ATCCCTTTCT TGATGCTATT TCCTTGACTT GCTCGTATAT TTGCTTGTTG TGCTCAAAAT 63025 .......... .......... .......... .......... .......... .......... 526 TTTCAGGCTT GAACCTTGGT ATATTCTGGA AAAAAAAGCA AATGACATCA GCCATCCCGA 63085 .......... .......... .......... .......... .......... .......... 526 TTATATGTAT TGTTTTATAC GTTAATTATA ACGTGCTGTA TCAGAAGAGA TTTCGAGCGA 63145 .......... .......... .......... .......... .......... .......... 526 TAAGGATGAG TTGGCAAACT GGATTGAGAA CCATGAGGTT CAAGTTCAAA TAAAAAAGAC 63205 .......... .......... .......... .......... .......... .......... 526 CAGGTGATTT CTTTCTATCT GTCTATGCCT TGATGGATAG AGTTACCCAA TATCAATGAA 63265 .......... .......... .......... .......... .......... .......... 526 CCGAAACAGT TTTTTCTTTG ATGACAACTT TGTTTAAACA ACTCTATTTT TGTATCGTTC 63325 .......... .......... .......... .......... .......... .......... 526 TAATTATAAA TATTGTGATT TCTAGTTAAG TTTCTATAAT TCAGATATAC CAAAAATTTG 63385 .......... .......... .......... .......... .......... .......... 526 GATGCATTGA CCATGACACT GTGACCCGCC ATTCTTTGTG GGATAGAAGT ACATATTTTG 63445 .......... .......... .......... .......... .......... .......... 526 TACACTCTAA GCATGTTAAT ATATAAAGAG TGTTTTTTTA TGTCCGAATT TGCACTAGAA 63505 .......... .......... .......... .......... .......... .......... 526 GTTAAGACTC GTTGATCTTG TATTCAGATC GCCTTATTCA TAAGTAGCAT GTGTTTCGTA 63565 .......... .......... .......... .......... .......... .......... 526 GCCTTAATTC ATCAATACTA ACGAAATCTC ATCAAGATCA GTACTGGTAG ATTGGTCGAG 63625 .......... .......... .......... .......... .......... .......... 526 CTCAGTTAAT CAGCAAGCCG TTGGTTCTGA GTAGGAAAGT CACAACGTTG ATGCTAATAT 63685 .......... .......... .......... .......... .......... .......... 526 TGAGCTCTCC AAAGGAGAGG CTTTGAGAGT TTCACAAAAA GCCAATGACA CATGTTGCAG 63745 .......... .......... .......... .......... .......... .......... 526 AATTTTGGTT TAAAAGGAAA ATGATGGGTA TGATATGCAG CTAATGGAGG TAAGTGGCTA 63805 | || | .......... .......... .......... .......... CAAAATCAC. .......... 535 AGTGCAAATG AAAATCATGC AAGATCGAAG ACAGTGCAAT TAACTAGACC AACCTTGCGG 63865 .......... .......... .......... .......... .......... .......... 535 AAGTCTCCCT CGGCCAAGCT CTCAATCAAC TCTGGACCTG CTGAGAAGAA TCCTCGTCCG 63925 .......... .......... .......... .......... .......... .......... 535 AGAGGACTAT ACGGAACAAT TCCAATTCCT AATTCTCTGG AAAAGGCATT TACTCAGAAG 63985 .......... .......... .......... .......... .......... .......... 535 AACCTTCAAA CTATCTGAAA GAGTGAACTC TAAGAGACAC ATTACCTGCA AGTTGGAACT 64045 .......... .......... .......... .......... .......... .......... 535 ATTTCTTCCT CAAGATCTCT GGTCCACAAT GACCACTCCA TCTGAACAGC TGTTATTGGA 64105 .......... .......... .......... .......... .......... .......... 535 TGCACCGCGT GTGCCCTTCT GATTGTTGCT GCGCAAGCCT CAGATAAACC TATATATTTG 64165 .......... .......... .......... .......... .......... .......... 535 ATTTTACCCT CTTCAACAAA TTTCTTCAGT TCTCCCATCT ACACACTATG CCACACAATG 64225 .......... .......... .......... .......... .......... .......... 535 TCACAAAAAC AAAATAATAA CAATAAGCAC AATAAACAAA TTGCCAATTT GAGATACTCC 64285 .......... .......... .......... .......... .......... .......... 535 ATTGTCGAAA TGTTTATTCT TCTATTTGAC TGGAGTATCA TCTTTATTGA TACTCTTCCA 64345 .......... .......... .......... .......... .......... .......... 535 TGCACCTATC ATTTTCTCTC CCCATGCTTT GCATTACTTG TTTATAATAG AAGATTAATT 64405 .......... .......... .......... .......... .......... .......... 535 TTGTCTCGGT GATGCTTTCA AAAACAATAG TAGTAGCTAA CAATGATGTA ACCTTTGTTT 64465 .......... .......... .......... .......... .......... .......... 535 GTGATTTCAT CATAAAGCAA TTCGTTGGTG ACAGAGCATA GAGTGG 64511 || | | |||||| .......... .......... .......... ....AG-ACA GAGTGG 546 hqPGS_C09HBa0109D11.1+_SGN-E548165- (61052 61538) ******************************************************************************** EST sequence 30 +strand 377 n (File: SGN-E203944+) 1 TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 61 ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 121 TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 181 TCAATCAGAA TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT 241 GCAGTTAGAT ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT 301 CGTTATAAGA TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC 361 ACTGAAACAG ATTAAGT Predicted gene structure (within gDNA segment 60461 to 62047): Exon 1 61061 61437 ( 377 n); cDNA 1 377 ( 377 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E203944+ 1.000 377 1.000 C PGS_C09HBa0109D11.1+_SGN-E203944+ (61061 61437) Alignment (genomic DNA sequence = upper lines): TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 61120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTACCCAG CTTCAAATAC TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT 60 ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 61180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGCCT TCAAATTTAA AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC 120 TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 61240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTCTTT GCTGGACTAC CAAGCCTGGA GTATCTTCAA TTAACAAATA TGTATTTTCC 180 TCAATCAGAA TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT 61300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATCAGAA TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT 240 GCAGTTAGAT ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT 61360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTAGAT ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT 300 CGTTATAAGA TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC 61420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTATAAGA TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC 360 ACTGAAACAG ATTAAGT 61437 |||||||||| ||||||| ACTGAAACAG ATTAAGT 377 hqPGS_C09HBa0109D11.1+_SGN-E203944+ (61061 61437) ******************************************************************************** EST sequence 106 -strand 655 n (File: SGN-E395395-) 1 CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG GGTTACAGTT 61 GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG TTATTCCCTT 121 CATTGCGGGA CTACCAAGCC TGGAATATCT CCGATTACAG GATGTGTGTT TTCCTCAATC 181 AGAAGAGTGG TGCCTTGGAG ATATGACGTT CCATAAACTT AAGTTGTTGA AACTGGTGAA 241 GTTAAATATA TCAAGGTGGG ATGTCTCAGA GGAATCATTT CCGTTGCTTG AAACACTCGT 301 TATAAAGAAG TGCGGTGACC TAGAGGAGAT CCCAGTTAGC TTTGCTGATA TTCCCACATT 361 GGAACAGATT AAATTGATTG GGTCCTGGAA AGTATCTTTG GAGGATTCAG CTGTGAGAAT 421 GAAGGAAGAA ATCATACAGA TTGAAGGATG TGATCGTTTA CACCTCGTCA AACAACACTC 481 AGATTGATGA TAGCTAATTG TTGCAGCCAC TCAAGTCTTG CTAGCCCATT TTTCTTTTGT 541 TGTAACACAA ATACTATTTG GTACGTTTGT TTTCATTGAT ACACTCTTTT TATGTATCAT 601 ATGATTGGAG ATAAATATAA ATCAGTTGCT CATTCACTGA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 58945 to 65810): Exon 1 61067 61538 ( 472 n); cDNA 1 475 ( 475 n); score: 0.762 Intron 1 61539 61767 ( 229 n); Pd: 0.999 (s: 0.62), Pa: 0.000 (s: 0) Exon 2 61768 61803 ( 36 n); cDNA 476 510 ( 35 n); score: 0.694 Intron 2 61804 62210 ( 407 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 62211 62219 ( 9 n); cDNA 511 519 ( 9 n); score: 0.667 Intron 3 62220 63031 ( 812 n); Pd: 0.900 (s: 0), Pa: 0.995 (s: 0) Exon 4 63032 63062 ( 31 n); cDNA 520 550 ( 31 n); score: 0.581 PPA cDNA 640 655 MATCH C09HBa0109D11.1+ SGN-E395395- 0.762 548 0.837 C PGS_C09HBa0109D11.1+_SGN-E395395- (61067 61538,61768 61803,62211 62219,63032 63062) Alignment (genomic DNA sequence = upper lines): CCAGCTTCAA ATACTTGACC TTTCCTTTAG GTTGTTCCAC ATGCTATCTG GGTTACAATT 61126 |||||||||| |||| | | |||||||| | || | | ||||| | ||||||| || CCAGCTTCAA CAACTTCAAC TTTCCTTTGT GCGTCCCCGC ACTCTATCCG GGTTACAGTT 60 GCCTTCAAAT TTAAAGATGT TGGTACTAAG AGACGCTGAT CTAGAAAACC TAACTTCCTT 61186 |||||||||| ||||| | || ||||||| || | || |||||| | | | |||| GCCTTCAAAT TTAAATAAGT TGGTACTTGA AGGAATTCAT ATAGAAAGTG TTATTCCCTT 120 CTTTGCTGGA CTACCAAGCC TGGAGTATCT TCAATTAACA AATATGTATT TTCCTCAATC 61246 | |||| ||| |||||||||| |||| ||||| | |||| || ||| || |||||||||| CATTGCGGGA CTACCAAGCC TGGAATATCT CCGATTACAG GATGTGTGTT TTCCTCAATC 180 AG-A-A-TGG TGCCTTGGAG ATATCACGTT TCATAAACTC AAGTTGTTGA AACTGGTGCA 61303 || | | ||| |||||||||| |||| ||||| |||||||| |||||||||| |||||||| | AGAAGAGTGG TGCCTTGGAG ATATGACGTT CCATAAACTT AAGTTGTTGA AACTGGTGAA 240 GTTAGATATC TCAAGGTGGG ATGTCTCGGA GGAATCCTTT CCCCTGCTTG AAACAATCGT 61363 |||| |||| |||||||||| ||||||| || |||||| ||| || |||||| ||||| |||| GTTAAATATA TCAAGGTGGG ATGTCTCAGA GGAATCATTT CCGTTGCTTG AAACACTCGT 300 TATAAGATGG TGCCATAACC TCGAGGAAAT CCCCATTAGC TTTGCAGATG TTCCAACACT 61423 ||||| | ||| | ||| | ||||| || ||| ||||| ||||| ||| |||| ||| | TATAAAGAAG TGCGGTGACC TAGAGGAGAT CCCAGTTAGC TTTGCTGATA TTCCCACATT 360 GAAACAGATT AAGTTGGTTC ACTGCAAGAA CAAATCTCTG GAGGATTCAG CTGTGAGGAT 61483 | |||||||| || ||| || | | ||| |||| || |||||||||| ||||||| || GGAACAGATT AAATTGATTG GGTCCTGGAA AGTATCTTTG GAGGATTCAG CTGTGAGAAT 420 TAAGAAAGAT GTTGAAGAGA ATGAAGGAAA CGACCGTATT GACCTCATTA TCAAAGTAAG 61543 ||| |||| | | ||| ||||||| || ||| | ||||| | | || GAAGGAAGAA ATCATACAGA TTGAAGGATG TGATCGTTTA CACCTCGTCA AACAA..... 475 TAGAAATAAA CTCCGATGTT TTGTTTTTGA GTATTTACCT GCATCTAACT TGACACCAAT 61603 .......... .......... .......... .......... .......... .......... 475 AATACAGAAA TAGTAGGGTC GTCCGGAAGC TGTGAGTCAA TTATGTGCCT GTAATTACAA 61663 .......... .......... .......... .......... .......... .......... 475 CAATGGTAAA TATGGTTTCT GTTTTATTTT TTTCGTGTTC CTTTCTCTAA TCTAATGTTT 61723 .......... .......... .......... .......... .......... .......... 475 GGTTTCACTT AATTTCTCCA CGTTTATCTC AAATTAAATT TGATAATTGC AGCAAAAGTA 61783 | | | || | | .......... .......... .......... .......... ....CACT-C AGATTGATGA 490 CAGCCAATTG TTGCAGCCAC GCTCATGCTC AAGTATATTG TGCGCCTAGA GCCGACATCC 61843 ||| ||||| |||||||||| TAGCTAATTG TTGCAGCCAC .......... .......... .......... .......... 510 CTGTCCTTTT TCTGTATGTT GTAGATGATC TTTCACTGTG ATTTCTTGTT GCCTTTTATA 61903 .......... .......... .......... .......... .......... .......... 510 AACATCATGC CTTTGTTATG CAGCTTTATT AATTTACAAC CTGTCAAAAC ATTGCTTCTT 61963 .......... .......... .......... .......... .......... .......... 510 TGTTTTTTGT AATATAATAG TTGTTTCCCT TCCATCTTAC ACCTGCAAAA TTCAATAAAG 62023 .......... .......... .......... .......... .......... .......... 510 TATACAATTG AAAGCTGGCT GAATACAACT CCCTAATATC AATCAATAGA ATACTGAATG 62083 .......... .......... .......... .......... .......... .......... 510 AAAGTTGTTT TGATACAAAA GCTATCTATA TTGTTCCGAC TCTTAAAAAA TGTCACCAAG 62143 .......... .......... .......... .......... .......... .......... 510 TAGTACTTTT GGATAACAAC TTAGATAGTT ATTTGTACTT CCTCTCTTAT TCCTTTGGTA 62203 .......... .......... .......... .......... .......... .......... 510 GCCTACATCA AATCAGGTTG GTTAACATGA ACATTTACAT ATCTATAAAA CTCAGGCAGA 62263 ||| | || .......TCA AGTCTT.... .......... .......... .......... .......... 519 AAAAAGTAAA GCATAGATTT ACGAGGATAC AGATTCGAGT CTCTGGAAGA TTTATCACTT 62323 .......... .......... .......... .......... .......... .......... 519 TGAGATGATC CAAGTTTTAC GTAAATCAAG TATAGAGAGA GAACCGGATA AATGCTCTAC 62383 .......... .......... .......... .......... .......... .......... 519 TTTATAGAGT GTTTAGCGGC CATGGTGTTG GATGAAAAAG TACAACTTGA ATATGCAATT 62443 .......... .......... .......... .......... .......... .......... 519 CTAAACCATA CGAAAACATT GAAAAATCGA GACTTGAAGT GATTTAGGAG TCTTGTGTGG 62503 .......... .......... .......... .......... .......... .......... 519 AAGGGCTCTA TCGCACAAAG GATCAAAGGT ACACAGGAGA TAACAAAAAA TTTCATCGCA 62563 .......... .......... .......... .......... .......... .......... 519 AAAACAAGTA AAACTTAGAT ATAAAGGTAT GCACTAGCAA AATGAGTTCA GAATACGAGA 62623 .......... .......... .......... .......... .......... .......... 519 AAACTACATT GCCTGGTTCA GCCTTTACTT CGAATTAGAC TTGGGCCTTA ACGGAGGCTT 62683 .......... .......... .......... .......... .......... .......... 519 CTTCCAAAGC AAGACGAGAA AGTATCCATT ATTCATCTAT CCAGGAGGAC AATGGTGGAG 62743 .......... .......... .......... .......... .......... .......... 519 TCTCCGAATT TATCCAAGTT GCCCACATGA ATGCGTGCCT TTCGCCTTTA ACCATATCTT 62803 .......... .......... .......... .......... .......... .......... 519 CAGCAGCACA GGACTCTAAC TGCATCATTT CATCAATTGT CAGCTTTACA GATATGGCTT 62863 .......... .......... .......... .......... .......... .......... 519 CGATATTTTC GTTGAGATTG TCAATCTTGG TGGTACCGGG TATGGGGCAT ATGTCATCTC 62923 .......... .......... .......... .......... .......... .......... 519 CTTTGTGAAG AATCCAAGCC AATGCAAGTT GTGATGTGGT GCATCCCTTT CTTGATGCTA 62983 .......... .......... .......... .......... .......... .......... 519 TTTCCTTGAC TTGCTCGTAT ATTTGCTTGT TGTGCTCAAA ATTTTCAGGC TTGAACCTTG 63043 || | | | || .......... .......... .......... .......... ........GC TAGCCCATTT 531 GTATATTCTG GAAAAAAAA 63062 | | || | | || | || TTCTTTTGTT GTAACACAA 550 hqPGS_C09HBa0109D11.1+_SGN-E395395- (61067 61538) ******************************************************************************** EST sequence 55 +strand 514 n (File: SGN-E288588+) 1 TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT ACAATTGCCT TCAAATTTAA 61 ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG TTCCTTCATT GCAGGACTAC 121 CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC TGTTCAAATC AGAGATTGGT 181 GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA ACTGGTGAAC TTACCGATCT 241 CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA AACACTTGTT ATAAAAAGGT 301 GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA 361 AGTTGATTAG GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG 421 TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAAGGATGG TAGGGAATAT 481 AATTCGAGAT GAAACATCAA AATCACAGAC AGAG Predicted gene structure (within gDNA segment 60211 to 62639): Exon 1 61081 61538 ( 458 n); cDNA 1 464 ( 464 n); score: 0.799 MATCH C09HBa0109D11.1+ SGN-E288588+ 0.799 458 0.891 C PGS_C09HBa0109D11.1+_SGN-E288588+ (61081 61538) Alignment (genomic DNA sequence = upper lines): TTGACCTTTC CTTTAGGTTG TTCCACATGC TATCTGGGTT ACAATTGCCT TCAAATTTAA 61140 || ||| | || | | | | |||| |||||||||| |||||||||| |||||||||| TTCGCCTAAC TGTTGAGAGG TCCAACATTG TATCTGGGTT ACAATTGCCT TCAAATTTAA 60 AGATGTTGGT ACTAAGAGAC GCTGATCTAG AAAACCTAAC TTCCTTCTTT GCTGGACTAC 61200 | | |||||| |||||| | ||| || | | ||||||| | ||||||| || || ||||||| ACAAGTTGGT ACTAAGTGGG GCTCATATCG AAAACCTGAG TTCCTTCATT GCAGGACTAC 120 CAAGCCTGGA GTATCTTCAA ---T-TAACA AATATGTATT TTCCTCAATC AGA-A-TGGT 61254 |||||||||| |||||| ||| | | || |||| || | |||| ||| | |||| CAAGCCTGGA GTATCTCCAA TTTTGTGACC CCTATGAATC TGTTCAAATC AGAGATTGGT 180 GCCTTGGAGA TATCACGTTT CATAAACTCA AGTTGTTGAA ACTGGTGCAG TTAGATATCT 61314 ||||||||| ||||||||| | |||||| | |||||||||| ||||||| | ||| |||| GCCTTGGAGG TATCACGTTC CCTAAACTTA AGTTGTTGAA ACTGGTGAAC TTACCGATCT 240 CAAGGTGGGA TGTCTCGGAG GAATCCTTTC CCCTGCTTGA AACAATCGTT ATAAGATGGT 61374 |||||||||| || ||| ||| ||||| |||| ||| ||| || |||| | ||| |||| | ||| CAAGGTGGGA TGCCTCAGAG GAATCGTTTC CCCAGCTCGA AACACTTGTT ATAAAAAGGT 300 GCCATAACCT CGAGGAAATC CCCATTAGCT TTGCAGATGT TCCAACACTG AAACAGATTA 61434 | | |||| | |||| ||| ||| |||||| |||| ||| | |||||||||| || ||||||| GTAACCACCT CAAGGAGATC CCCCTTAGCT TTGCTGATAT TCCAACACTG AAGCAGATTA 360 AGTTGGTTCA CTGCAAGAAC AAATCTCTGG AGGATTCAGC TGTGAGGATT AAGAAAGATG 61494 ||||| || ||| ||||| ||||||| |||||||||| |||| |||| |||||||| | AGTTGATTAG GTGCGAGAAC GAATCTCTCA AGGATTCAGC TGTGGAGATT AAGAAAGACG 420 TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAA 61538 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTGAAGAGAA TGAAGGAAAC GACCGTATTG ACCTCATTAT CAAA 464 hqPGS_C09HBa0109D11.1+_SGN-E288588+ (61081 61538) ******************************************************************************** EST sequence 76 -strand 621 n (File: SGN-E251865-) 1 AGTATCTCCA ATTTTGTGAC CCCTATGAAT CTGTTCAAAT CAGAGATTGG TGCCTTGGAG 61 GTATCACGTT CCCTAAACTT AAGTTGTTGA AACTGGTGAA CTTACCGATC TCAAGGTGGG 121 ATGCCTCAGA GGAATCGTTT CCCCAGCTCG AAACACTTGT TATAAAAAGG TGTAACCACC 181 TCAAGGAGAT CCCCCTTAGC TTTGCTGATA TTCCAACACT GAAGCAGATT AAGTTGATTA 241 GGTGCGAGAA CGAATCTCTC AAGGATTCAG CTGTGGAGAT TAAGAAAGAC GTTGAAGAGA 301 ATGAAGGAAA CGACCGTATT GACCTCATTA TCAAAGGATG GTAGGGAATA TAATTCGAGA 361 TGAAACATCA AAATCACAGA CAGAGTGGCC GGGGAATAAC AAGGCAAGAA GCTCTCTCTC 421 AAGTTCACAA ATTTTCGCAG CATTAAAAAC TCAAAGGTTT TGATAGTGTC TTAGATATAA 481 GCTCATTGAC ATGATACTTT TGCTGTGCAC TCAAAATTTT GAAGTTTGTT ATTGTTGAAT 541 TATTGTAATT TGTCCCACCT ATTGCCAAAT TTTAATCACA AACATTTCTT TTTTAATAAA 601 AGTAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 59874 to 65589): Exon 1 61251 61538 ( 288 n); cDNA 48 335 ( 288 n); score: 0.865 Intron 1 61539 61610 ( 72 n); Pd: 0.999 (s: 0.98), Pa: 0.832 (s: 0) Exon 2 61611 61623 ( 13 n); cDNA 336 348 ( 13 n); score: 0.615 Intron 2 61624 61816 ( 193 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 61817 61822 ( 6 n); cDNA 349 354 ( 6 n); score: 0.833 Intron 3 61823 62204 ( 382 n); Pd: 0.373 (s: 0), Pa: 0.293 (s: 0) Exon 4 62205 62219 ( 15 n); cDNA 355 368 ( 14 n); score: 0.600 Intron 4 62220 63785 (1566 n); Pd: 0.900 (s: 0), Pa: 0.990 (s: 0) Exon 5 63786 63794 ( 9 n); cDNA 369 377 ( 9 n); score: 0.444 Intron 5 63795 64499 ( 705 n); Pd: 0.761 (s: 0), Pa: 0.801 (s: 0) Exon 6 64500 64511 ( 12 n); cDNA 378 388 ( 11 n); score: 0.833 PPA cDNA 604 621 MATCH C09HBa0109D11.1+ SGN-E251865- 0.865 343 0.552 C PGS_C09HBa0109D11.1+_SGN-E251865- (61251 61538,61611 61623,61817 61822,62205 62219,63786 63794,64500 64511) Alignment (genomic DNA sequence = upper lines): TGGTGCCTTG GAGATATCAC GTTTCATAAA CTCAAGTTGT TGAAACTGGT GCAGTTAGAT 61310 |||||||||| ||| |||||| ||| | |||| || ||||||| |||||||||| | | ||| TGGTGCCTTG GAGGTATCAC GTTCCCTAAA CTTAAGTTGT TGAAACTGGT GAACTTACCG 107 ATCTCAAGGT GGGATGTCTC GGAGGAATCC TTTCCCCTGC TTGAAACAAT CGTTATAAGA 61370 |||||||||| |||||| ||| |||||||| ||||||| || | |||||| | ||||||| | ATCTCAAGGT GGGATGCCTC AGAGGAATCG TTTCCCCAGC TCGAAACACT TGTTATAAAA 167 TGGTGCCATA ACCTCGAGGA AATCCCCATT AGCTTTGCAG ATGTTCCAAC ACTGAAACAG 61430 |||| | ||||| |||| |||||| || |||||||| | || ||||||| |||||| ||| AGGTGTAACC ACCTCAAGGA GATCCCCCTT AGCTTTGCTG ATATTCCAAC ACTGAAGCAG 227 ATTAAGTTGG TTCACTGCAA GAACAAATCT CTGGAGGATT CAGCTGTGAG GATTAAGAAA 61490 ||||||||| || ||| | |||| ||||| || |||||| |||||||| |||||||||| ATTAAGTTGA TTAGGTGCGA GAACGAATCT CTCAAGGATT CAGCTGTGGA GATTAAGAAA 287 GATGTTGAAG AGAATGAAGG AAACGACCGT ATTGACCTCA TTATCAAAGT AAGTAGAAAT 61550 || ||||||| |||||||||| |||||||||| |||||||||| |||||||| GACGTTGAAG AGAATGAAGG AAACGACCGT ATTGACCTCA TTATCAAA.. .......... 335 AAACTCCGAT GTTTTGTTTT TGAGTATTTA CCTGCATCTA ACTTGACACC AATAATACAG 61610 .......... .......... .......... .......... .......... .......... 335 AAATAGTAGG GTCGTCCGGA AGCTGTGAGT CAATTATGTG CCTGTAATTA CAACAATGGT 61670 || ||||| | GGATGGTAGG GAA....... .......... .......... .......... .......... 348 AAATATGGTT TCTGTTTTAT TTTTTTCGTG TTCCTTTCTC TAATCTAATG TTTGGTTTCA 61730 .......... .......... .......... .......... .......... .......... 348 CTTAATTTCT CCACGTTTAT CTCAAATTAA ATTTGATAAT TGCAGCAAAA GTACAGCCAA 61790 .......... .......... .......... .......... .......... .......... 348 TTGTTGCAGC CACGCTCATG CTCAAGTATA TTGTGCGCCT AGAGCCGACA TCCCTGTCCT 61850 |||| | .......... .......... ......TATA AT........ .......... .......... 354 TTTTCTGTAT GTTGTAGATG ATCTTTCACT GTGATTTCTT GTTGCCTTTT ATAAACATCA 61910 .......... .......... .......... .......... .......... .......... 354 TGCCTTTGTT ATGCAGCTTT ATTAATTTAC AACCTGTCAA AACATTGCTT CTTTGTTTTT 61970 .......... .......... .......... .......... .......... .......... 354 TGTAATATAA TAGTTGTTTC CCTTCCATCT TACACCTGCA AAATTCAATA AAGTATACAA 62030 .......... .......... .......... .......... .......... .......... 354 TTGAAAGCTG GCTGAATACA ACTCCCTAAT ATCAATCAAT AGAATACTGA ATGAAAGTTG 62090 .......... .......... .......... .......... .......... .......... 354 TTTTGATACA AAAGCTATCT ATATTGTTCC GACTCTTAAA AAATGTCACC AAGTAGTACT 62150 .......... .......... .......... .......... .......... .......... 354 TTTGGATAAC AACTTAGATA GTTATTTGTA CTTCCTCTCT TATTCCTTTG GTAGCCTACA 62210 | | | .......... .......... .......... .......... .......... ....TCGAGA 360 TCAAATCAGG TTGGTTAACA TGAACATTTA CATATCTATA AAACTCAGGC AGAAAAAAGT 62270 | ||| || TGAAA-CAT. .......... .......... .......... .......... .......... 368 AAAGCATAGA TTTACGAGGA TACAGATTCG AGTCTCTGGA AGATTTATCA CTTTGAGATG 62330 .......... .......... .......... .......... .......... .......... 368 ATCCAAGTTT TACGTAAATC AAGTATAGAG AGAGAACCGG ATAAATGCTC TACTTTATAG 62390 .......... .......... .......... .......... .......... .......... 368 AGTGTTTAGC GGCCATGGTG TTGGATGAAA AAGTACAACT TGAATATGCA ATTCTAAACC 62450 .......... .......... .......... .......... .......... .......... 368 ATACGAAAAC ATTGAAAAAT CGAGACTTGA AGTGATTTAG GAGTCTTGTG TGGAAGGGCT 62510 .......... .......... .......... .......... .......... .......... 368 CTATCGCACA AAGGATCAAA GGTACACAGG AGATAACAAA AAATTTCATC GCAAAAACAA 62570 .......... .......... .......... .......... .......... .......... 368 GTAAAACTTA GATATAAAGG TATGCACTAG CAAAATGAGT TCAGAATACG AGAAAACTAC 62630 .......... .......... .......... .......... .......... .......... 368 ATTGCCTGGT TCAGCCTTTA CTTCGAATTA GACTTGGGCC TTAACGGAGG CTTCTTCCAA 62690 .......... .......... .......... .......... .......... .......... 368 AGCAAGACGA GAAAGTATCC ATTATTCATC TATCCAGGAG GACAATGGTG GAGTCTCCGA 62750 .......... .......... .......... .......... .......... .......... 368 ATTTATCCAA GTTGCCCACA TGAATGCGTG CCTTTCGCCT TTAACCATAT CTTCAGCAGC 62810 .......... .......... .......... .......... .......... .......... 368 ACAGGACTCT AACTGCATCA TTTCATCAAT TGTCAGCTTT ACAGATATGG CTTCGATATT 62870 .......... .......... .......... .......... .......... .......... 368 TTCGTTGAGA TTGTCAATCT TGGTGGTACC GGGTATGGGG CATATGTCAT CTCCTTTGTG 62930 .......... .......... .......... .......... .......... .......... 368 AAGAATCCAA GCCAATGCAA GTTGTGATGT GGTGCATCCC TTTCTTGATG CTATTTCCTT 62990 .......... .......... .......... .......... .......... .......... 368 GACTTGCTCG TATATTTGCT TGTTGTGCTC AAAATTTTCA GGCTTGAACC TTGGTATATT 63050 .......... .......... .......... .......... .......... .......... 368 CTGGAAAAAA AAGCAAATGA CATCAGCCAT CCCGATTATA TGTATTGTTT TATACGTTAA 63110 .......... .......... .......... .......... .......... .......... 368 TTATAACGTG CTGTATCAGA AGAGATTTCG AGCGATAAGG ATGAGTTGGC AAACTGGATT 63170 .......... .......... .......... .......... .......... .......... 368 GAGAACCATG AGGTTCAAGT TCAAATAAAA AAGACCAGGT GATTTCTTTC TATCTGTCTA 63230 .......... .......... .......... .......... .......... .......... 368 TGCCTTGATG GATAGAGTTA CCCAATATCA ATGAACCGAA ACAGTTTTTT CTTTGATGAC 63290 .......... .......... .......... .......... .......... .......... 368 AACTTTGTTT AAACAACTCT ATTTTTGTAT CGTTCTAATT ATAAATATTG TGATTTCTAG 63350 .......... .......... .......... .......... .......... .......... 368 TTAAGTTTCT ATAATTCAGA TATACCAAAA ATTTGGATGC ATTGACCATG ACACTGTGAC 63410 .......... .......... .......... .......... .......... .......... 368 CCGCCATTCT TTGTGGGATA GAAGTACATA TTTTGTACAC TCTAAGCATG TTAATATATA 63470 .......... .......... .......... .......... .......... .......... 368 AAGAGTGTTT TTTTATGTCC GAATTTGCAC TAGAAGTTAA GACTCGTTGA TCTTGTATTC 63530 .......... .......... .......... .......... .......... .......... 368 AGATCGCCTT ATTCATAAGT AGCATGTGTT TCGTAGCCTT AATTCATCAA TACTAACGAA 63590 .......... .......... .......... .......... .......... .......... 368 ATCTCATCAA GATCAGTACT GGTAGATTGG TCGAGCTCAG TTAATCAGCA AGCCGTTGGT 63650 .......... .......... .......... .......... .......... .......... 368 TCTGAGTAGG AAAGTCACAA CGTTGATGCT AATATTGAGC TCTCCAAAGG AGAGGCTTTG 63710 .......... .......... .......... .......... .......... .......... 368 AGAGTTTCAC AAAAAGCCAA TGACACATGT TGCAGAATTT TGGTTTAAAA GGAAAATGAT 63770 .......... .......... .......... .......... .......... .......... 368 GGGTATGATA TGCAGCTAAT GGAGGTAAGT GGCTAAGTGC AAATGAAAAT CATGCAAGAT 63830 | || | .......... .....CAAAA TCAC...... .......... .......... .......... 377 CGAAGACAGT GCAATTAACT AGACCAACCT TGCGGAAGTC TCCCTCGGCC AAGCTCTCAA 63890 .......... .......... .......... .......... .......... .......... 377 TCAACTCTGG ACCTGCTGAG AAGAATCCTC GTCCGAGAGG ACTATACGGA ACAATTCCAA 63950 .......... .......... .......... .......... .......... .......... 377 TTCCTAATTC TCTGGAAAAG GCATTTACTC AGAAGAACCT TCAAACTATC TGAAAGAGTG 64010 .......... .......... .......... .......... .......... .......... 377 AACTCTAAGA GACACATTAC CTGCAAGTTG GAACTATTTC TTCCTCAAGA TCTCTGGTCC 64070 .......... .......... .......... .......... .......... .......... 377 ACAATGACCA CTCCATCTGA ACAGCTGTTA TTGGATGCAC CGCGTGTGCC CTTCTGATTG 64130 .......... .......... .......... .......... .......... .......... 377 TTGCTGCGCA AGCCTCAGAT AAACCTATAT ATTTGATTTT ACCCTCTTCA ACAAATTTCT 64190 .......... .......... .......... .......... .......... .......... 377 TCAGTTCTCC CATCTACACA CTATGCCACA CAATGTCACA AAAACAAAAT AATAACAATA 64250 .......... .......... .......... .......... .......... .......... 377 AGCACAATAA ACAAATTGCC AATTTGAGAT ACTCCATTGT CGAAATGTTT ATTCTTCTAT 64310 .......... .......... .......... .......... .......... .......... 377 TTGACTGGAG TATCATCTTT ATTGATACTC TTCCATGCAC CTATCATTTT CTCTCCCCAT 64370 .......... .......... .......... .......... .......... .......... 377 GCTTTGCATT ACTTGTTTAT AATAGAAGAT TAATTTTGTC TCGGTGATGC TTTCAAAAAC 64430 .......... .......... .......... .......... .......... .......... 377 AATAGTAGTA GCTAACAATG ATGTAACCTT TGTTTGTGAT TTCATCATAA AGCAATTCGT 64490 .......... .......... .......... .......... .......... .......... 377 TGGTGACAGA GCATAGAGTG G 64511 | | | |||||| | .........A G-ACAGAGTG G 388 hqPGS_C09HBa0109D11.1+_SGN-E251865- (61251 61538) ******************************************************************************** EST sequence 97 +strand 732 n (File: SGN-E213674+) 1 AAAAAGTGGT CATTTTATAA ATAATTCATT GGAGATTGAA AGTACTATTA AGTGGTTAGA 61 TGATCAACAG GATTCCTCTG TAGTGTTTTT GTGTTTTGGT AGTATGGGAA GTTTTGAAGC 121 AGAACAGGTC AAAGAAATAG CAACTGCACT GGAGCATTCC GGTCACAGGT TCTTGTGGTC 181 TTTAAGAAAA TCTCCACCAA AGGGAAAAGT AGATATACCA ACAAGTTACA GCGACTATGA 241 AGAAGTTTTG CCAAAAGGAT TCTTGGAGAG AACAAAAGAA AGAGGAAAAA TAATAGGATG 301 GGCACCACAA GTAACAATTT TATCTCATCC ATCAATAGGA GGATTTGTGT CCCATTGTGG 361 ATGGAATTCA ATACTAGAAA GTGTACATTT TGGTGTACCA ATTGCAACTT GGCCACTCTA 421 TGCTGAACAA CAAATGAATG CATTTTTATT AGTGAAAGAA TTAGGACTTG GTGAAGAGAT 481 AAGATTGGAC TATGCTGTTG ATTTTGAAGG GAAAAATAAT CAAGTTGATA CAGTAAGTGC 541 TCAAGAAATT GAAAGTGGTT TATTAAAGTT GATGGTAAAA AGTGAAGAAA ATGAAGTGAG 601 GAAAAAAATG AAGGAGAAGA GTAGAGTAGC TATGGAGGGA AGGTGGATCA TCTTATAACT 661 CACTTGGACT TCTAATTTAG GATGTAATCA CNAATATTTA ATTTTCTTAT AGTATATGAA 721 GAAGCAAAAC AG Predicted gene structure (within gDNA segment 69217 to 65867): Exon 1 68617 68450 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 68449 67049 (1401 n); Pd: 1.000 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 2 67048 66487 ( 562 n); cDNA 169 731 ( 563 n); score: 0.992 MATCH C09HBa0109D11.1- SGN-E213674+ 0.994 730 0.997 C PGS_C09HBa0109D11.1-_SGN-E213674+ (68617 68450,67048 66487) Alignment (genomic DNA sequence = upper lines): AAAAAGTGGT CATTTTATAA ATAATTCATT GGAGATTGAA AGTACTATTA AGTGGTTAGA 68558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGTGGT CATTTTATAA ATAATTCATT GGAGATTGAA AGTACTATTA AGTGGTTAGA 60 TGATCAACAG GATTCCTCTG TAGTGTTTTT GTGTTTTGGT AGTATGGGAA GTTTTGAAGC 68498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCAACAG GATTCCTCTG TAGTGTTTTT GTGTTTTGGT AGTATGGGAA GTTTTGAAGC 120 AGAACAGGTC AAAGAAATAG CAACTGCACT GGAGCATTCC GGTCACAGGT ATTATTAGTT 68438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGAACAGGTC AAAGAAATAG CAACTGCACT GGAGCATTCC GGTCACAG.. .......... 168 GTAATTTTTT TTTTTACTCT CCAGTTTCAT CAAGTTGCTT GTCTGGTTTA CATGTAGCAC 68378 .......... .......... .......... .......... .......... .......... 168 AGAGTTTTTT TTATTAAAAA TAGAAAAGAC TTTTCAATTT TGTGGTATTT CTTAAACGAT 68318 .......... .......... .......... .......... .......... .......... 168 AAATAGGTAG AATATAACAA AATATCTTTT AATTTTACAG TTTTAAACAT GTCACGTGAA 68258 .......... .......... .......... .......... .......... .......... 168 AATTTGAAGT TAAAGAGTTG TTAAAAAAAA GAAGGGAAAA TGCACAAGCA CCCCTCAACC 68198 .......... .......... .......... .......... .......... .......... 168 CGTTTTCGCA TGGGCTCATC ATCTGATGCA GAACCGATGC GAGAGGGAGA AGCGGGGATT 68138 .......... .......... .......... .......... .......... .......... 168 GATAGCTTTC AAGAACCAGT GGAAAGGAAA GACTTCTTTC CCGAAATCTC AGAGACACAC 68078 .......... .......... .......... .......... .......... .......... 168 TTATACTATA TTAAAGTCTT ATTACCCCTG AACTTATTTT ATAAGTAATT TTCTATCCAT 68018 .......... .......... .......... .......... .......... .......... 168 TTTCAGCCTA CGTGGTTTCA ACTTGAAAAA AAAAAGTCAA TCAGCCTTTG GCCCAGAAGA 67958 .......... .......... .......... .......... .......... .......... 168 TAGTGCCATG AAAGTCGAAA AGGGATAGAA AATTATTAAT AAAATAAGTT CAGGGGGAAA 67898 .......... .......... .......... .......... .......... .......... 168 TAGTACCTTA GTATAGTATA AGTGTGCCTC TGAGATTTCG AACATAGTTT GAGGGAGTAC 67838 .......... .......... .......... .......... .......... .......... 168 TTGTGCATTA TCCCTTACAG AATAAAAGAA TAAATAAGGC AAACAAATTT AAACGGAGAA 67778 .......... .......... .......... .......... .......... .......... 168 AGTAACATAG TGTGCATACA TATAATATAT GGATGTACTA CATATGATAA AGGTTTATTT 67718 .......... .......... .......... .......... .......... .......... 168 ATAATTAACT AGAGATGTTA TGTTCTAGCC TTAGAGAACG AACTCTCATA ATTTACAACA 67658 .......... .......... .......... .......... .......... .......... 168 TATAATACAT ATATTGGATC CTAAACTTGG CTCCAAATTT TAACTTTGAC TTTCAACTTT 67598 .......... .......... .......... .......... .......... .......... 168 CATAATGCAC AAACAAACAC TTTAACTATC CAACTTTTAA ATAAATAAAC ACATGAGTCC 67538 .......... .......... .......... .......... .......... .......... 168 TAAATGGCAC AATACAAGTA GGATACCACG TAGGACAAAA AATGACATGT AGGACGACAT 67478 .......... .......... .......... .......... .......... .......... 168 GTAGGACATA CGTGTCTATT TGTTCAACTT TATACAAGTT TAAGTGTTTA TTTGTGCACA 67418 .......... .......... .......... .......... .......... .......... 168 TCTAAAGTTG AAGAACATAA ATGTAATTTG AAATCAAGTT AAAGGGCATA TTTATGTATT 67358 .......... .......... .......... .......... .......... .......... 168 ATGCCTTTAC GATAATAAGG ATTCATATCT CACACCAACT AACTTTGTTG ATTGGGATTA 67298 .......... .......... .......... .......... .......... .......... 168 AGGGTATAAG TTTTTCTTTT TTTTCATATG TATAGTGGCT TGTTTATATA TCTCAAAGGA 67238 .......... .......... .......... .......... .......... .......... 168 AAGTTTTTTT CACCTACACT CTCCAAATTA ATATTATGTC GTGCGCGTAT GTGTTGGATT 67178 .......... .......... .......... .......... .......... .......... 168 CTCTAAAACT ACTTTATTTT TGGAAAATCC AATACGTACA TATCGTCATT TTAAAAAAAT 67118 .......... .......... .......... .......... .......... .......... 168 CTGAGCAACA TAGATTTTTA TACCTCGAAA ACCTATTCCT AATTTTGTTT TATTGTTATT 67058 .......... .......... .......... .......... .......... .......... 168 TTTAAATAGG TTCTTGTGGT CTTTAAGAAA ATCTCCACCA AAGGGAAAAG TAGATATACC 66998 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TTCTTGTGGT CTTTAAGAAA ATCTCCACCA AAGGGAAAAG TAGATATACC 219 AACAAGTTAC AGCGACTATG AAGAAGTTTT GCCAAAAGGA TTCTTGGAGA GAACAAAAGA 66938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGTTAC AGCGACTATG AAGAAGTTTT GCCAAAAGGA TTCTTGGAGA GAACAAAAGA 279 AAGAGGAAAA ATAATAGGAT GGGCACCACA AGTAACAATT TTATCTCATC CATCAATAGG 66878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGAAAA ATAATAGGAT GGGCACCACA AGTAACAATT TTATCTCATC CATCAATAGG 339 AGGATTTGTG TCCCATTGTG GATGGAATTC AATACTAGAA AGTGTACATT TTGGTGTACC 66818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTTGTG TCCCATTGTG GATGGAATTC AATACTAGAA AGTGTACATT TTGGTGTACC 399 AATTGCAACT TGGCCACTCT ATGCTGAACA ACAAATGAAT GCATTTTTAT TAGTGAAAGA 66758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCAACT TGGCCACTCT ATGCTGAACA ACAAATGAAT GCATTTTTAT TAGTGAAAGA 459 ATTAGGACTT GGTGAAGAGA TAAGATTGGA CTATGCTGTT GATTTTGAAG GGAAAAATAA 66698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGGACTT GGTGAAGAGA TAAGATTGGA CTATGCTGTT GATTTTGAAG GGAAAAATAA 519 TCAAGTTGAT ACAGTAAGTG CTCAAGAAAT TGAAAGTGGT TTATTAAAGT TGATGGTAAA 66638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTTGAT ACAGTAAGTG CTCAAGAAAT TGAAAGTGGT TTATTAAAGT TGATGGTAAA 579 AAGTGAAGAA AATGAAGTGA GGAAAAAAAT GAAGGAGAAG AGTAGAGTAG CTATGGA-GG 66579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAGTGAAGAA AATGAAGTGA GGAAAAAAAT GAAGGAGAAG AGTAGAGTAG CTATGGAGGG 639 AAGGTGGATC ATCTTATAAC TCACTTGGAC TTCTAATTAA GGATGTAATC ACAAATATTT 66519 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| AAGGTGGATC ATCTTATAAC TCACTTGGAC TTCTAATTTA GGATGTAATC ACNAATATTT 699 AATTTTCTTA TAGTATATGA AGAAGCAAAA CA 66487 |||||||||| |||||||||| |||||||||| || AATTTTCTTA TAGTATATGA AGAAGCAAAA CA 731 hqPGS_C09HBa0109D11.1-_SGN-E213674+ (68617 68450,67048 66487) ******************************************************************************** EST sequence 25 -strand 693 n (File: SGN-E374785-) 1 GCATTCCGGT CACAGGTTCT TGTGGTCTTT AAGAAAATCT CCACCAAAGG GAAAAGTAGA 61 TATACCAACA AGTTACAGCG ACTATGAAGA AGTTTTGCCA AAAGGATTCT TGGAGAGAAC 121 AAAAGAAAGA GGAAAAATAA TAGGATGGGC ACCACAAGTA ACAATTTTAT CTCATCCATC 181 AATAGGAGGA TTTGTGTCCC ATTGTGGATG GAATTCAATA CTAGAAAGTG TACATTTTGG 241 TGTACCAATT GCAACTTGGC CACTCTATGC TGAACAACAA ATGAATGCAT TTTTATTAGT 301 GAAAGAATTA GGACTTGGTG AAGAGATAAG ATTGGACTAT GCTGTTGATT TTGAAGGGAA 361 AAATAATCAA GTTGATACAG TAAGTGCTCA AGAAATTGAA AGTGGTTTAT TAAAGTTGAT 421 GGTAAAAAGT GAAGAAAATG AAGTGAGGAA AAAAATGAAG GAGAAGAGTA GAGTAGCTAT 481 GGAGGAAGGT GGATCATCTT ATAACTCACT TGGACTTCTA ATTAAGGATG TAATCACAAA 541 TATTTAATTT TCTTATAGTA TATGAAGAAG CAAAACAAGA GAAGATATAT GGTATTTGAG 601 GAGATATGTA GTATTATGAT TTATGGTCAT TTTTAATATT TGTACACTTT CAATATTTAT 661 TCAATGCGTT CACTTCAAAA ATAAAAAAAA AAA Predicted gene structure (within gDNA segment 67790 to 65690): Exon 1 67048 66380 ( 669 n); cDNA 16 684 ( 669 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E374785- 1.000 669 0.965 C PGS_C09HBa0109D11.1-_SGN-E374785- (67048 66380) Alignment (genomic DNA sequence = upper lines): GTTCTTGTGG TCTTTAAGAA AATCTCCACC AAAGGGAAAA GTAGATATAC CAACAAGTTA 66989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTGTGG TCTTTAAGAA AATCTCCACC AAAGGGAAAA GTAGATATAC CAACAAGTTA 75 CAGCGACTAT GAAGAAGTTT TGCCAAAAGG ATTCTTGGAG AGAACAAAAG AAAGAGGAAA 66929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCGACTAT GAAGAAGTTT TGCCAAAAGG ATTCTTGGAG AGAACAAAAG AAAGAGGAAA 135 AATAATAGGA TGGGCACCAC AAGTAACAAT TTTATCTCAT CCATCAATAG GAGGATTTGT 66869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATAGGA TGGGCACCAC AAGTAACAAT TTTATCTCAT CCATCAATAG GAGGATTTGT 195 GTCCCATTGT GGATGGAATT CAATACTAGA AAGTGTACAT TTTGGTGTAC CAATTGCAAC 66809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCCATTGT GGATGGAATT CAATACTAGA AAGTGTACAT TTTGGTGTAC CAATTGCAAC 255 TTGGCCACTC TATGCTGAAC AACAAATGAA TGCATTTTTA TTAGTGAAAG AATTAGGACT 66749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCCACTC TATGCTGAAC AACAAATGAA TGCATTTTTA TTAGTGAAAG AATTAGGACT 315 TGGTGAAGAG ATAAGATTGG ACTATGCTGT TGATTTTGAA GGGAAAAATA ATCAAGTTGA 66689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAAGAG ATAAGATTGG ACTATGCTGT TGATTTTGAA GGGAAAAATA ATCAAGTTGA 375 TACAGTAAGT GCTCAAGAAA TTGAAAGTGG TTTATTAAAG TTGATGGTAA AAAGTGAAGA 66629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGTAAGT GCTCAAGAAA TTGAAAGTGG TTTATTAAAG TTGATGGTAA AAAGTGAAGA 435 AAATGAAGTG AGGAAAAAAA TGAAGGAGAA GAGTAGAGTA GCTATGGAGG AAGGTGGATC 66569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAAGTG AGGAAAAAAA TGAAGGAGAA GAGTAGAGTA GCTATGGAGG AAGGTGGATC 495 ATCTTATAAC TCACTTGGAC TTCTAATTAA GGATGTAATC ACAAATATTT AATTTTCTTA 66509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTATAAC TCACTTGGAC TTCTAATTAA GGATGTAATC ACAAATATTT AATTTTCTTA 555 TAGTATATGA AGAAGCAAAA CAAGAGAAGA TATATGGTAT TTGAGGAGAT ATGTAGTATT 66449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATATGA AGAAGCAAAA CAAGAGAAGA TATATGGTAT TTGAGGAGAT ATGTAGTATT 615 ATGATTTATG GTCATTTTTA ATATTTGTAC ACTTTCAATA TTTATTCAAT GCGTTCACTT 66389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTTATG GTCATTTTTA ATATTTGTAC ACTTTCAATA TTTATTCAAT GCGTTCACTT 675 CAAAAATAA 66380 ||||||||| CAAAAATAA 684 hqPGS_C09HBa0109D11.1-_SGN-E374785- (67048 66380) ******************************************************************************** EST sequence 99 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 70218 to 61043): Exon 1 68248 68197 ( 52 n); cDNA 86 140 ( 55 n); score: 0.644 Intron 1 68196 68102 ( 95 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.86) Exon 2 68101 67800 ( 302 n); cDNA 141 441 ( 301 n); score: 0.795 Intron 2 67799 63568 (4232 n); Pd: 0.674 (s: 0.66), Pa: 0.314 (s: 0) Exon 3 63567 63554 ( 14 n); cDNA 442 455 ( 14 n); score: 0.643 Intron 3 63553 63121 ( 433 n); Pd: 0.000 (s: 0), Pa: 0.135 (s: 0) Exon 4 63120 63112 ( 9 n); cDNA 456 464 ( 9 n); score: 0.889 Intron 4 63111 62511 ( 601 n); Pd: 0.000 (s: 0), Pa: 0.501 (s: 0) Exon 5 62510 62499 ( 12 n); cDNA 465 476 ( 12 n); score: 0.750 Intron 5 62498 62246 ( 253 n); Pd: 0.000 (s: 0), Pa: 0.660 (s: 0.56) Exon 6 62245 62182 ( 64 n); cDNA 477 538 ( 62 n); score: 0.531 Intron 6 62181 62006 ( 176 n); Pd: 0.864 (s: 0.50), Pa: 0.998 (s: 0) Exon 7 62005 61994 ( 12 n); cDNA 539 550 ( 12 n); score: 0.833 PPA cDNA 12 1 MATCH C09HBa0109D11.1- SGN-E540411+ 0.736 465 0.542 C PGS_C09HBa0109D11.1-_SGN-E540411+ (68248 68197,68101 67800,63567 63554,63120 63112,62510 62499,62245 62182,62005 61994) Alignment (genomic DNA sequence = upper lines): TTAAAGAGTT GTTAAA-AA- AAAGAAGGGA AAATGCACAA GCACC-CCTC AACCCGTTTT 68192 || || | ||||| || || |||||| ||||||||| | ||| |||| |||| TTGAACTATA ATTAAAGAAC AATAAAGGGA TAATGCACAA GTACCCCCTC AACCT..... 140 CGCATGGGCT CATCATCTGA TGCAGAACCG ATGCGAGAGG GAGAAGCGGG GATTGATAGC 68132 .......... .......... .......... .......... .......... .......... 140 TTTCAAGAAC CAGTGGAAAG GAAAGACTTC TTTCCCGAAA TCTCAGAGAC ACACTTATAC 68072 | ||||||| | ||||||| |||||||||| .......... .......... .......... ATGCCCGAAA TTCCAGAGAC ACACTTATAC 170 TATATTAAAG TCTTATTACC C--CTGAACT TATTTTATAA GTAATTTTCT ATCCATTTTC 68014 |||| ||| | || ||||||| | ||||||| |||||||||| |||||||||| | || |||| TATACTAAGG TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT 230 AGCCTACGTG GTTTCAACTT GAAAAAAAAA AGTCAATCAG CCTTTGGCCC AGAAGATAGT 67954 |||||||||| | | | || |||||||| |||||| | | || ||||| | |||||||| AGCCTACGTG G-CACTAGTT -TAAAAAAAA AGTCAACAAC CATTGGGCCC ACAAGATAGT 288 GCCATGAAAG TCGAAAAGGG ATAGAAAATT ATTAATAAAA TAAGTTCAGG GGGAAATAGT 67894 |||| | | | || ||||||| || |||||| |||||| ||| |||||||||| ||| |||| GCCACGTAGG TCTAAAAGGG GTAAAAAATT ATTAAT-AAA TAAGTTCAGG GGGTAATAAG 347 ACCTTAGTAT AGTATAAGTG TGCCTCTGAG ATTTCGAACA TAGTTTGAGG GAGTACTTGT 67834 | |||||||| ||||||||| | ||||||| |||| | ||| ||| | ||| | ||||||| ATCTTAGTAT GGTATAAGTG TATCTCTGAG ATTTTGGACA TAGGCTAAGG GGGTACTTGG 407 GCATTATCCC TTACAGAATA AAAGAATAAA TAAGGCAAAC AAATTTAAAC GGAGAAAGTA 67774 ||||||||| | || |||| ||| | | ACATTATCCC AACAATAAAT AAAGGATATA ACAT...... .......... .......... 441 ACATAGTGTG CATACATATA ATATATGGAT GTACTACATA TGATAAAGGT TTATTTATAA 67714 .......... .......... .......... .......... .......... .......... 441 TTAACTAGAG ATGTTATGTT CTAGCCTTAG AGAACGAACT CTCATAATTT ACAACATATA 67654 .......... .......... .......... .......... .......... .......... 441 ATACATATAT TGGATCCTAA ACTTGGCTCC AAATTTTAAC TTTGACTTTC AACTTTCATA 67594 .......... .......... .......... .......... .......... .......... 441 ATGCACAAAC AAACACTTTA ACTATCCAAC TTTTAAATAA ATAAACACAT GAGTCCTAAA 67534 .......... .......... .......... .......... .......... .......... 441 TGGCACAATA CAAGTAGGAT ACCACGTAGG ACAAAAAATG ACATGTAGGA CGACATGTAG 67474 .......... .......... .......... .......... .......... .......... 441 GACATACGTG TCTATTTGTT CAACTTTATA CAAGTTTAAG TGTTTATTTG TGCACATCTA 67414 .......... .......... .......... .......... .......... .......... 441 AAGTTGAAGA ACATAAATGT AATTTGAAAT CAAGTTAAAG GGCATATTTA TGTATTATGC 67354 .......... .......... .......... .......... .......... .......... 441 CTTTACGATA ATAAGGATTC ATATCTCACA CCAACTAACT TTGTTGATTG GGATTAAGGG 67294 .......... .......... .......... .......... .......... .......... 441 TATAAGTTTT TCTTTTTTTT CATATGTATA GTGGCTTGTT TATATATCTC AAAGGAAAGT 67234 .......... .......... .......... .......... .......... .......... 441 TTTTTTCACC TACACTCTCC AAATTAATAT TATGTCGTGC GCGTATGTGT TGGATTCTCT 67174 .......... .......... .......... .......... .......... .......... 441 AAAACTACTT TATTTTTGGA AAATCCAATA CGTACATATC GTCATTTTAA AAAAATCTGA 67114 .......... .......... .......... .......... .......... .......... 441 GCAACATAGA TTTTTATACC TCGAAAACCT ATTCCTAATT TTGTTTTATT GTTATTTTTA 67054 .......... .......... .......... .......... .......... .......... 441 AATAGGTTCT TGTGGTCTTT AAGAAAATCT CCACCAAAGG GAAAAGTAGA TATACCAACA 66994 .......... .......... .......... .......... .......... .......... 441 AGTTACAGCG ACTATGAAGA AGTTTTGCCA AAAGGATTCT TGGAGAGAAC AAAAGAAAGA 66934 .......... .......... .......... .......... .......... .......... 441 GGAAAAATAA TAGGATGGGC ACCACAAGTA ACAATTTTAT CTCATCCATC AATAGGAGGA 66874 .......... .......... .......... .......... .......... .......... 441 TTTGTGTCCC ATTGTGGATG GAATTCAATA CTAGAAAGTG TACATTTTGG TGTACCAATT 66814 .......... .......... .......... .......... .......... .......... 441 GCAACTTGGC CACTCTATGC TGAACAACAA ATGAATGCAT TTTTATTAGT GAAAGAATTA 66754 .......... .......... .......... .......... .......... .......... 441 GGACTTGGTG AAGAGATAAG ATTGGACTAT GCTGTTGATT TTGAAGGGAA AAATAATCAA 66694 .......... .......... .......... .......... .......... .......... 441 GTTGATACAG TAAGTGCTCA AGAAATTGAA AGTGGTTTAT TAAAGTTGAT GGTAAAAAGT 66634 .......... .......... .......... .......... .......... .......... 441 GAAGAAAATG AAGTGAGGAA AAAAATGAAG GAGAAGAGTA GAGTAGCTAT GGAGGAAGGT 66574 .......... .......... .......... .......... .......... .......... 441 GGATCATCTT ATAACTCACT TGGACTTCTA ATTAAGGATG TAATCACAAA TATTTAATTT 66514 .......... .......... .......... .......... .......... .......... 441 TCTTATAGTA TATGAAGAAG CAAAACAAGA GAAGATATAT GGTATTTGAG GAGATATGTA 66454 .......... .......... .......... .......... .......... .......... 441 GTATTATGAT TTATGGTCAT TTTTAATATT TGTACACTTT CAATATTTAT TCAATGCGTT 66394 .......... .......... .......... .......... .......... .......... 441 CACTTCAAAA ATAATTTTCA TACTTCTTTC AAACAATTTT CTTGATTTGA GTCCATCGAT 66334 .......... .......... .......... .......... .......... .......... 441 AAAATTCAAG TATAATTCAT CCTCCTCTCA AACCTTACTT GAGTTTGTCA TTATACTTGA 66274 .......... .......... .......... .......... .......... .......... 441 TATATTATTA TTACTATTGT TTCAAATGGA TTAAACAATA CTGAATATTT ATATTTAACT 66214 .......... .......... .......... .......... .......... .......... 441 TCAAATTTAA ATATACGCTT ATAATGCTTG TACAAATTAA GTATTTAAAA ATATACATGT 66154 .......... .......... .......... .......... .......... .......... 441 ATAATATGTA TAGTGATTTT ATAAAGTTTA TGTCAACCAA AAAAAAAGAG AAACTTACTC 66094 .......... .......... .......... .......... .......... .......... 441 TCACAATGGA AGGCTCCTTT TTACAATTTT AATTCCAAAA TATTCTTTTT TTTTTTTCCA 66034 .......... .......... .......... .......... .......... .......... 441 ACTAACTCTA ACCAAATTCG TAGTCCAAAC TTTGGTCAAC ATATTCTGTG AGCTCACTGT 65974 .......... .......... .......... .......... .......... .......... 441 TCAAGAGATT CGACGGAGGA AATGGAAACG CCGGCGAGTA AAATTCCGAG GATCAAATTA 65914 .......... .......... .......... .......... .......... .......... 441 GGCTCGCAAG GCCTAGAAGT TTCTAGAATC GGGCTGGGCT GTAGAGGCAT GTCTCCCAAT 65854 .......... .......... .......... .......... .......... .......... 441 CATGGCCCGC CCAAGCCCGA GCCCGAAATG ATCAAGCTCA TTCAACACTC CATTGATCGC 65794 .......... .......... .......... .......... .......... .......... 441 GGCGTCACCT TCCTCGATAC GTCCGATCAG TATGGACCTC ACATCAATGA ACTTCTCATC 65734 .......... .......... .......... .......... .......... .......... 441 GGCAAGGTAA AATAAAATGT AACAATTACT GCTTTAATGT GTTGTACCTC CTGCTTTAAT 65674 .......... .......... .......... .......... .......... .......... 441 GTGTTGTACC TTGCTGTTTT CCCAATTTAT ACACTAATTG AGGTAGTTAA ACATGTGCAT 65614 .......... .......... .......... .......... .......... .......... 441 TCTAAATTTT ATTTTGTTTA GGCAATTAAA GGAATGAGAG AAAAAGTACA AATAGCTTCC 65554 .......... .......... .......... .......... .......... .......... 441 AAATTTGGCA TAAGTTTGAA AGAAGGGAAA ATGGACATTT GTGGTGAACC AGAGTATGTA 65494 .......... .......... .......... .......... .......... .......... 441 AGAGCTTGTT GTGAAGCTAG CTTGAAGCGA CTAGATATCG ACTGCATCGA TCTTTATTAT 65434 .......... .......... .......... .......... .......... .......... 441 GTTCATCGGA TTGATATTCG AGTGCCTATT GAAATCACGG TTTGACATCT TACTCTTTTT 65374 .......... .......... .......... .......... .......... .......... 441 TTTCCCTTTA TTATATTTGA GGATTTCTAG CAAACTTCTT GTAGTACTGT TCGGTCGCTA 65314 .......... .......... .......... .......... .......... .......... 441 TCTGTTGTTT ACACTAGTAT CTGTTTTTTC TTGTATTCAC ATTACTTCTT TTTCTAGACT 65254 .......... .......... .......... .......... .......... .......... 441 ACTATGAGCT ATTTTTCCTC GAGCTGAGGG TCTATCGATA ACAACCTTCC TATCTACGAG 65194 .......... .......... .......... .......... .......... .......... 441 GTAGGGGTAA GGTTTGTGTA TACTCTATCC TCATTCAAAC ACCACTTTGT GGGACTATAC 65134 .......... .......... .......... .......... .......... .......... 441 TAGGTATGTT GTTGATTTCT AGCGAATTGT TGGATTGTGT GGTTTGTGTA AAGAGGTAAC 65074 .......... .......... .......... .......... .......... .......... 441 AGTAACCAGT TAATCACTTG GATAAAAGCA GATTTCACAT GGATATAGCT TGGCTAGAAA 65014 .......... .......... .......... .......... .......... .......... 441 TCGCAAAAAT CTTCTAGTCT TTAAAAAAAA AGAATTGATT GAATCAACTG TGTGGAAAAT 64954 .......... .......... .......... .......... .......... .......... 441 GGTCCCGAGC TATTTACTTG AATCCGCTTT TATATTGCCA AACCGACATA TTCATGAAGA 64894 .......... .......... .......... .......... .......... .......... 441 TCTTCTGATG CACTATATTT TTCGGACTCT TCAAAAGTGT TGATGGAGAT GGGTGCGTGT 64834 .......... .......... .......... .......... .......... .......... 441 AGGATCCTTC CTCCAAAGAC TGTTCTTTGG GAGAATCTGA TTAACATAGC TGATGTGTTG 64774 .......... .......... .......... .......... .......... .......... 441 TTTGTCAATC CATGAGATAA ATTCAGAGAC GGAACAATGT TCTACTGATG GTAGAGAAAA 64714 .......... .......... .......... .......... .......... .......... 441 AGTGGTGTAC GAAAAGGTTG AATTGAATCT TATGCTATGT GAGAAATGTA ATGTGTTCCT 64654 .......... .......... .......... .......... .......... .......... 441 CTCGAATTCT CGGAGGATAG GCCAATGCTT TGAAATTCTT GTGTTGATAA AGTTTACTCA 64594 .......... .......... .......... .......... .......... .......... 441 GTAAAAGGAA CACTCATCTA TGCTTACTGT AATTTCGTAG TTTCTCTAAC TATGAAAGAA 64534 .......... .......... .......... .......... .......... .......... 441 TTTCTGTCTA TGTCACACTT ACCCACTCTA TGCTCTGTCA CCAACGAATT GCTTTATGAT 64474 .......... .......... .......... .......... .......... .......... 441 GAAATCACAA ACAAAGGTTA CATCATTGTT AGCTACTACT ATTGTTTTTG AAAGCATCAC 64414 .......... .......... .......... .......... .......... .......... 441 CGAGACAAAA TTAATCTTCT ATTATAAACA AGTAATGCAA AGCATGGGGA GAGAAAATGA 64354 .......... .......... .......... .......... .......... .......... 441 TAGGTGCATG GAAGAGTATC AATAAAGATG ATACTCCAGT CAAATAGAAG AATAAACATT 64294 .......... .......... .......... .......... .......... .......... 441 TCGACAATGG AGTATCTCAA ATTGGCAATT TGTTTATTGT GCTTATTGTT ATTATTTTGT 64234 .......... .......... .......... .......... .......... .......... 441 TTTTGTGACA TTGTGTGGCA TAGTGTGTAG ATGGGAGAAC TGAAGAAATT TGTTGAAGAG 64174 .......... .......... .......... .......... .......... .......... 441 GGTAAAATCA AATATATAGG TTTATCTGAG GCTTGCGCAG CAACAATCAG AAGGGCACAC 64114 .......... .......... .......... .......... .......... .......... 441 GCGGTGCATC CAATAACAGC TGTTCAGATG GAGTGGTCAT TGTGGACCAG AGATCTTGAG 64054 .......... .......... .......... .......... .......... .......... 441 GAAGAAATAG TTCCAACTTG CAGGTAATGT GTCTCTTAGA GTTCACTCTT TCAGATAGTT 63994 .......... .......... .......... .......... .......... .......... 441 TGAAGGTTCT TCTGAGTAAA TGCCTTTTCC AGAGAATTAG GAATTGGAAT TGTTCCGTAT 63934 .......... .......... .......... .......... .......... .......... 441 AGTCCTCTCG GACGAGGATT CTTCTCAGCA GGTCCAGAGT TGATTGAGAG CTTGGCCGAG 63874 .......... .......... .......... .......... .......... .......... 441 GGAGACTTCC GCAAGGTTGG TCTAGTTAAT TGCACTGTCT TCGATCTTGC ATGATTTTCA 63814 .......... .......... .......... .......... .......... .......... 441 TTTGCACTTA GCCACTTACC TCCATTAGCT GCATATCATA CCCATCATTT TCCTTTTAAA 63754 .......... .......... .......... .......... .......... .......... 441 CCAAAATTCT GCAACATGTG TCATTGGCTT TTTGTGAAAC TCTCAAAGCC TCTCCTTTGG 63694 .......... .......... .......... .......... .......... .......... 441 AGAGCTCAAT ATTAGCATCA ACGTTGTGAC TTTCCTACTC AGAACCAACG GCTTGCTGAT 63634 .......... .......... .......... .......... .......... .......... 441 TAACTGAGCT CGACCAATCT ACCAGTACTG ATCTTGATGA GATTTCGTTA GTATTGATGA 63574 .......... .......... .......... .......... .......... .......... 441 ATTAAGGCTA CGAAACACAT GCTACTTATG AATAAGGCGA TCTGAATACA AGATCAACGA 63514 | | | ||| ||| ......GATT CAAAAGACAA .......... .......... .......... .......... 455 GTCTTAACTT CTAGTGCAAA TTCGGACATA AAAAAACACT CTTTATATAT TAACATGCTT 63454 .......... .......... .......... .......... .......... .......... 455 AGAGTGTACA AAATATGTAC TTCTATCCCA CAAAGAATGG CGGGTCACAG TGTCATGGTC 63394 .......... .......... .......... .......... .......... .......... 455 AATGCATCCA AATTTTTGGT ATATCTGAAT TATAGAAACT TAACTAGAAA TCACAATATT 63334 .......... .......... .......... .......... .......... .......... 455 TATAATTAGA ACGATACAAA AATAGAGTTG TTTAAACAAA GTTGTCATCA AAGAAAAAAC 63274 .......... .......... .......... .......... .......... .......... 455 TGTTTCGGTT CATTGATATT GGGTAACTCT ATCCATCAAG GCATAGACAG ATAGAAAGAA 63214 .......... .......... .......... .......... .......... .......... 455 ATCACCTGGT CTTTTTTATT TGAACTTGAA CCTCATGGTT CTCAATCCAG TTTGCCAACT 63154 .......... .......... .......... .......... .......... .......... 455 CATCCTTATC GCTCGAAATC TCTTCTGATA CAGCACGTTA TAATTAACGT ATAAAACAAT 63094 ||||| | || .......... .......... .......... ...CACGTGA TA........ .......... 464 ACATATAATC GGGATGGCTG ATGTCATTTG CTTTTTTTTC CAGAATATAC CAAGGTTCAA 63034 .......... .......... .......... .......... .......... .......... 464 GCCTGAAAAT TTTGAGCACA ACAAGCAAAT ATACGAGCAA GTCAAGGAAA TAGCATCAAG 62974 .......... .......... .......... .......... .......... .......... 464 AAAGGGATGC ACCACATCAC AACTTGCATT GGCTTGGATT CTTCACAAAG GAGATGACAT 62914 .......... .......... .......... .......... .......... .......... 464 ATGCCCCATA CCCGGTACCA CCAAGATTGA CAATCTCAAC GAAAATATCG AAGCCATATC 62854 .......... .......... .......... .......... .......... .......... 464 TGTAAAGCTG ACAATTGATG AAATGATGCA GTTAGAGTCC TGTGCTGCTG AAGATATGGT 62794 .......... .......... .......... .......... .......... .......... 464 TAAAGGCGAA AGGCACGCAT TCATGTGGGC AACTTGGATA AATTCGGAGA CTCCACCATT 62734 .......... .......... .......... .......... .......... .......... 464 GTCCTCCTGG ATAGATGAAT AATGGATACT TTCTCGTCTT GCTTTGGAAG AAGCCTCCGT 62674 .......... .......... .......... .......... .......... .......... 464 TAAGGCCCAA GTCTAATTCG AAGTAAAGGC TGAACCAGGC AATGTAGTTT TCTCGTATTC 62614 .......... .......... .......... .......... .......... .......... 464 TGAACTCATT TTGCTAGTGC ATACCTTTAT ATCTAAGTTT TACTTGTTTT TGCGATGAAA 62554 .......... .......... .......... .......... .......... .......... 464 TTTTTTGTTA TCTCCTGTGT ACCTTTGATC CTTTGTGCGA TAGAGCCCTT CCACACAAGA 62494 | | ||| | ||| .......... .......... .......... .......... ...ACCACTT CTACA..... 476 CTCCTAAATC ACTTCAAGTC TCGATTTTTC AATGTTTTCG TATGGTTTAG AATTGCATAT 62434 .......... .......... .......... .......... .......... .......... 476 TCAAGTTGTA CTTTTTCATC CAACACCATG GCCGCTAAAC ACTCTATAAA GTAGAGCATT 62374 .......... .......... .......... .......... .......... .......... 476 TATCCGGTTC TCTCTCTATA CTTGATTTAC GTAAAACTTG GATCATCTCA AAGTGATAAA 62314 .......... .......... .......... .......... .......... .......... 476 TCTTCCAGAG ACTCGAATCT GTATCCTCGT AAATCTATGC TTTACTTTTT TCTGCCTGAG 62254 .......... .......... .......... .......... .......... .......... 476 TTTTATAGAT ATGTAAATGT TCATGTTAAC CAACCTGATT TGATGTAGGC TACCAAAGGA 62194 | ||| ||| ||| || | || | | | | | | || | ||| || ........AC TTGTGCATGA TCA-ATTGAG CACCATATTG AGGTTGAAGC -AACAATGGG 526 ATAAGAGAGG AAGTACAAAT AACTATCTAA GTTGTTATCC AAAAGTACTA CTTGGTGACA 62134 | ||| | TGAGGAGCAT GA........ .......... .......... .......... .......... 538 TTTTTTAAGA GTCGGAACAA TATAGATAGC TTTTGTATCA AAACAACTTT CATTCAGTAT 62074 .......... .......... .......... .......... .......... .......... 538 TCTATTGATT GATATTAGGG AGTTGTATTC AGCCAGCTTT CAATTGTATA CTTTATTGAA 62014 .......... .......... .......... .......... .......... .......... 538 TTTTGCAGGT GTAAGATGGA 61994 | ||||||||| ........GC ATAAGATGGA 550 hqPGS_C09HBa0109D11.1-_SGN-E540411+ (68101 67800) ******************************************************************************** EST sequence 102 +strand 684 n (File: SGN-E374786+) 1 TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 61 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 121 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 181 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 241 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 301 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 361 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 421 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 481 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA ATCTTTGTCC 541 TACTAAAGTT TTGCCTAAGC ATTTGTTAGA TTCAAGACTT GCTTCAACAT TGTTTTTTGA 601 TGGAATTCGT CGATTTAAAG AGACTAAGGG GATTATTGTT AATACTTTTT TCGAGCTTGA 661 ATCGTTTTCT CTTCAGGCTC TTTT Predicted gene structure (within gDNA segment 69955 to 68062): Exon 1 69355 68672 ( 684 n); cDNA 1 684 ( 684 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E374786+ 1.000 684 1.000 C PGS_C09HBa0109D11.1-_SGN-E374786+ (69355 68672) Alignment (genomic DNA sequence = upper lines): TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 69296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 60 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 69236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 120 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 69176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 180 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 69116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 240 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 69056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 300 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 68996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 360 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 68936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 420 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 68876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 480 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA ATCTTTGTCC 68816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA ATCTTTGTCC 540 TACTAAAGTT TTGCCTAAGC ATTTGTTAGA TTCAAGACTT GCTTCAACAT TGTTTTTTGA 68756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAAAGTT TTGCCTAAGC ATTTGTTAGA TTCAAGACTT GCTTCAACAT TGTTTTTTGA 600 TGGAATTCGT CGATTTAAAG AGACTAAGGG GATTATTGTT AATACTTTTT TCGAGCTTGA 68696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATTCGT CGATTTAAAG AGACTAAGGG GATTATTGTT AATACTTTTT TCGAGCTTGA 660 ATCGTTTTCT CTTCAGGCTC TTTT 68672 |||||||||| |||||||||| |||| ATCGTTTTCT CTTCAGGCTC TTTT 684 hqPGS_C09HBa0109D11.1-_SGN-E374786+ (69355 68672) ******************************************************************************** EST sequence 72 +strand 604 n (File: SGN-E211480+) 1 TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 61 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 121 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 181 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 241 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 301 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 361 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 421 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 481 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGGTTTAAAA ATCTTTGTCC 541 TACTAAAGTT TTGCCTAAGC ATTTGGTAGA TTCAAGACTT GCTTCAACAT TGGTTTTTGA 601 TGGA Predicted gene structure (within gDNA segment 69955 to 68034): Exon 1 69355 68752 ( 604 n); cDNA 1 604 ( 604 n); score: 0.995 MATCH C09HBa0109D11.1- SGN-E211480+ 0.995 604 1.000 C PGS_C09HBa0109D11.1-_SGN-E211480+ (69355 68752) Alignment (genomic DNA sequence = upper lines): TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 69296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 60 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 69236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 120 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 69176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 180 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 69116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 240 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 69056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 300 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 68996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 360 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 68936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 420 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 68876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 480 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA ATCTTTGTCC 68816 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGGTTTAAAA ATCTTTGTCC 540 TACTAAAGTT TTGCCTAAGC ATTTGTTAGA TTCAAGACTT GCTTCAACAT TGTTTTTTGA 68756 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| || ||||||| TACTAAAGTT TTGCCTAAGC ATTTGGTAGA TTCAAGACTT GCTTCAACAT TGGTTTTTGA 600 TGGA 68752 |||| TGGA 604 hqPGS_C09HBa0109D11.1-_SGN-E211480+ (69355 68752) ******************************************************************************** EST sequence 82 +strand 530 n (File: SGN-E202394+) 1 TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 61 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 121 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 181 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 241 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 301 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 361 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 421 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 481 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA Predicted gene structure (within gDNA segment 69955 to 68216): Exon 1 69355 68826 ( 530 n); cDNA 1 530 ( 530 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E202394+ 1.000 530 1.000 C PGS_C09HBa0109D11.1-_SGN-E202394+ (69355 68826) Alignment (genomic DNA sequence = upper lines): TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 69296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAACATG AAAGAATTAA TTTTCATTCC TTTAGCAGGA TTAGGGCACA TTGTATCAGC 60 TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 69236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAATTT GCAAAACAAA TTCTAAATAA AGATGAAAAT TTTTCCATCT CTTTTCTCAT 120 CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 69176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAACTT CCTTTAGACT ATGGTGTGAA AAATTTCATT CAATCACTCA CTTCTCAACC 180 TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 69116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTTAAAA TTCATCGATA TCACCCTAGA CGAAAAAACA TCATCTCAAT TCCTCAATAA 240 CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 69056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGAAACA TTCCTCTATG ATTTCATCGA TGGTCACAAA CCACGCGTAC GTGAATATGT 300 TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 68996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAACATT TGTAAAACAA GTCCATGTTA TGGTTTTGTT CTTGACATGT TTTGTACATC 360 GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 68936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATTGAT ATAGCTAACG AATTCAATGT CCCTAGTTAC ATTTACTTCG CGTCAAACGC 420 TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 68876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTCTT GGCTTATGTC TTCATTTTGA GACTTTAAGA AATGAACAAC ATTCAGATAC 480 GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA 68826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAGATAC ATGAACTCTA ACGAGGCATT ATCAATCCCA TGTTTTAAAA 530 hqPGS_C09HBa0109D11.1-_SGN-E202394+ (69355 68826) ******************************************************************************** EST sequence 45 -strand 384 n (File: SGN-E230552-) 1 GGGGGCAAAG AGTGGGAGAA AGGTGAATTG TATATGTATA TAATTGTGTA TTATACATAT 61 GCATTTGTAT GTATGGCGAG CGAGATTGGG AGAAGGAGGA GAGAAGCGAG TGAAATTGAG 121 AGAGGGAGGA GAGAGGCGAG CGAGAGAGGG CAGAGAGTGG GAGAGAGGTG AATTGTATAT 181 GTATATAGGT TAAATAATTG TATATTATAC ATGTGTATTT GTATATCCTG GCGAAAGTGA 241 CTAATAATAC AAATTCGAAG TCAGCCCACG TAATTAATGT ATAATGTTAG TCATGAGTTC 301 TAATTATAGC AAACTATAGC TATGATGAGT AATTAAATAG TATAAATTTG CTTAGCCGCG 361 TAATTTTCCC AAAAGATAAA AAAA Predicted gene structure (within gDNA segment 72650 to 68330): Exon 1 70927 70812 ( 116 n); cDNA 1 110 ( 110 n); score: 0.793 Intron 1 70811 70749 ( 63 n); Pd: 0.000 (s: 0.82), Pa: 1.000 (s: 0.67) Exon 2 70748 70457 ( 292 n); cDNA 111 384 ( 274 n); score: 0.759 MATCH C09HBa0109D11.1- SGN-E230552- 0.768 408 1.062 C PGS_C09HBa0109D11.1-_SGN-E230552- (70927 70812,70748 70457) Alignment (genomic DNA sequence = upper lines): GGGGGAAAAG AGTGGGAGAA AAGTGGATTG TATATATATT GGTTAGATAA TTGTATATTA 70868 ||||| |||| |||||||||| | ||| |||| ||||| || | || || ||||| || GGGGGCAAAG AGTGGGAGAA AGGTGAATTG TATATGTA-T --ATA-AT-T GTGTATTATA 55 CAATATGTAC TTGTATATAT GACAAGAGAG ATTGGGAGAG GGAGGAGAGA GGCAAGCGAG 70808 | ||||| | |||||| ||| | | || ||| ||||||||| |||||||||| || || C-ATATGCAT TTGTATGTAT GGCGAGCGAG ATTGGGAGAA GGAGGAGAGA AGCGAG.... 110 AGAGGGCAGA GAGGTGAATT GTATATAATT GTATATTATA CATATATATT TGTATATAGG 70748 .......... .......... .......... .......... .......... .........T 111 GCAAGCGAGA TTGGGA-GAG AGAGGAGAGC GAGAGAGGGC AAAGAGT--G AGAGATGTGA 70691 | || |||| |||| ||| ||||| |||| |||||||||| | ||||| | ||||| |||| GAAATTGAGA GAGGGAGGAG AGAGGCGAGC GAGAGAGGGC AGAGAGTGGG AGAGAGGTGA 171 ACTGTATATG TATATAGGGT AAATAATTGT ATATTATACA TATGTGTATA TTTGTATATT 70631 | |||||||| |||||||| | |||||||||| ||||||||| ||||| || ||||||||| ATTGTATATG TATATAGGTT AAATAATTGT ATATTATAC- -ATGTG--TA TTTGTATATC 227 CTGGCGAATT ATACATATAC AAACAGGACT AGTTATACAA GTTTGAAGTC AAACCCACAT 70571 |||||| | | | | |||| | | |||||| || |||||| | ||||| | CTGGCG---- A-A-A-GT-- ------GACT AATAATACAA ATTCGAAGTC -AGCCCACGT 271 AATTACTGTA TAATGTTAGT CGTGAGTGAT AATTACAGCA AAGTATAGCT ATGATGAGTA 70511 ||||| |||| |||||||||| | ||||| | ||||| |||| || ||||||| |||||||||| AATTAATGTA TAATGTTAGT CATGAGTTCT AATTATAGCA AACTATAGCT ATGATGAGTA 331 ATTAACTAAT ATAAATTTAT TTTGTTAGCG TAATTTTTCC TATTCTAATT ATAA 70457 ||||| || | |||||||| || | ||| ||||||| || | | | || ATTAAATAGT ATAAATTTGC TTAG-CCGCG TAATTTTCCC AAAAGATAAA AAAA 384 hqPGS_C09HBa0109D11.1-_SGN-E230552- (70927 70812,70748 70457) ******************************************************************************** EST sequence 41 +strand 377 n (File: SGN-E390527+) 1 CCAACATGTA TTTTACATTA ACTAACTAGA TTTAAAACAA ATATCGGACA CATATTAAAA 61 AATTAATTTG AAAAAATGAT TTTTCAATTT CAGTTTTCAT TTTAAAAGTG AAATTCCATT 121 TTTACCCTTT TTCACCTACT ATTTAATTTT CATTTTCTTT TAGAATTTTC TAGTTATGGT 181 GTTTTCCTTC TTCCTTCCTT CTTTTTAGTA TAACAAGATT AATGGAGTCA ACAATTTACA 241 GACGAAACAT CTGCTCAAAA AACCAACCAG AAAGGCTCAA GCTACGACGT TTTTGAGCTG 301 ATGGATGAAG AATTCGAGAG GAAGAGGATT GAAGTTAAAG GCTATGGAAG CTTTGGGCTG 361 TGGGTTTGAT TTTGCAT Predicted gene structure (within gDNA segment 73266 to 75016): Exon 1 73866 74118 ( 253 n); cDNA 1 253 ( 253 n); score: 1.000 Intron 1 74119 74265 ( 147 n); Pd: 0.239 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 74266 74386 ( 121 n); cDNA 254 375 ( 122 n); score: 0.979 MATCH C09HBa0109D11.1+ SGN-E390527+ 0.993 374 0.992 C PGS_C09HBa0109D11.1+_SGN-E390527+ (73866 74118,74266 74386) Alignment (genomic DNA sequence = upper lines): CCAACATGTA TTTTACATTA ACTAACTAGA TTTAAAACAA ATATCGGACA CATATTAAAA 73925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACATGTA TTTTACATTA ACTAACTAGA TTTAAAACAA ATATCGGACA CATATTAAAA 60 AATTAATTTG AAAAAATGAT TTTTCAATTT CAGTTTTCAT TTTAAAAGTG AAATTCCATT 73985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAATTTG AAAAAATGAT TTTTCAATTT CAGTTTTCAT TTTAAAAGTG AAATTCCATT 120 TTTACCCTTT TTCACCTACT ATTTAATTTT CATTTTCTTT TAGAATTTTC TAGTTATGGT 74045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACCCTTT TTCACCTACT ATTTAATTTT CATTTTCTTT TAGAATTTTC TAGTTATGGT 180 GTTTTCCTTC TTCCTTCCTT CTTTTTAGTA TAACAAGATT AATGGAGTCA ACAATTTACA 74105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCCTTC TTCCTTCCTT CTTTTTAGTA TAACAAGATT AATGGAGTCA ACAATTTACA 240 GACGAAACAT CTGGTCAAAA GTCAAACCTT TTCTCTTTCA CTTTCCTTCT CCCGTCATCT 74165 |||||||||| ||| GACGAAACAT CTG....... .......... .......... .......... .......... 253 ACTTCTGACC AAAACCCCTC TACCTATCCC CAAACCTTAT ACCCCTCATT TTCTCAAATG 74225 .......... .......... .......... .......... .......... .......... 253 GGTATTTCTT AAAATTTCCA TTTTTTGTAC TTTTTTTCAG CTCAAAAAAC CAACCAGAAA 74285 |||||||||| |||||||||| .......... .......... .......... .......... CTCAAAAAAC CAACCAGAAA 273 GGCTCAAGCT ACGACGTTTT TGAGCTGATG GATGAAGAAT TCGAGAGGAA GAGGATTGAA 74345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCAAGCT ACGACGTTTT TGAGCTGATG GATGAAGAAT TCGAGAGGAA GAGGATTGAA 333 GTT-AAGGCT ATGGAAGCTT TGGGCTGTGG GTTTGATTTT GC 74386 ||| |||||| |||||||||| |||||||||| |||||||||| || GTTAAAGGCT ATGGAAGCTT TGGGCTGTGG GTTTGATTTT GC 375 hqPGS_C09HBa0109D11.1+_SGN-E390527+ (73866 74118,74266 74386) ******************************************************************************** EST sequence 44 +strand 543 n (File: SGN-E326008+) 1 CAACATGTAT TTTACATTAA CTAACTAGAT TTAAAACAAA TATCGGACAC ATATTAAAAA 61 ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 121 TTACCCTTTT TCACCTACTA TTTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 181 TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 241 ACGAAACATC TGCTCAAAAA ACCAACCAGA AAGGCTCAAG CTACGACGTT TTTGAGCTGA 301 TGGATGAAGA ATTCGAGAGG AAGAGGATTG AAGTTAAGGC TATGGAAGCT TTGGGCTGTG 361 GGTTTGATTT TGCTAGCGAT TTCAGGTTGA AGTTCGTAAA AAGATGTCCA AACGGGGGTA 421 GATTGGTAAT TTTGGATGAG AGTAATAGAC GGAACGTCGT CATCCCCGGC GGCGTTACAA 481 TTCCCGATGT ATCTGAAAAT ATCCGATGTG ATAAANGGGA CCACATTCGT TTCAAGTCTG 541 ATG Predicted gene structure (within gDNA segment 73267 to 75166): Exon 1 73867 74118 ( 252 n); cDNA 1 252 ( 252 n); score: 1.000 Intron 1 74119 74265 ( 147 n); Pd: 0.239 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 74266 74556 ( 291 n); cDNA 253 543 ( 291 n); score: 0.997 MATCH C09HBa0109D11.1+ SGN-E326008+ 0.998 543 1.000 C PGS_C09HBa0109D11.1+_SGN-E326008+ (73867 74118,74266 74556) Alignment (genomic DNA sequence = upper lines): CAACATGTAT TTTACATTAA CTAACTAGAT TTAAAACAAA TATCGGACAC ATATTAAAAA 73926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATGTAT TTTACATTAA CTAACTAGAT TTAAAACAAA TATCGGACAC ATATTAAAAA 60 ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 73986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 120 TTACCCTTTT TCACCTACTA TTTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 74046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCCTTTT TCACCTACTA TTTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 180 TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 74106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 240 ACGAAACATC TGGTCAAAAG TCAAACCTTT TCTCTTTCAC TTTCCTTCTC CCGTCATCTA 74166 |||||||||| || ACGAAACATC TG........ .......... .......... .......... .......... 252 CTTCTGACCA AAACCCCTCT ACCTATCCCC AAACCTTATA CCCCTCATTT TCTCAAATGG 74226 .......... .......... .......... .......... .......... .......... 252 GTATTTCTTA AAATTTCCAT TTTTTGTACT TTTTTTCAGC TCAAAAAACC AACCAGAAAG 74286 | |||||||||| |||||||||| .......... .......... .......... .........C TCAAAAAACC AACCAGAAAG 273 GCTCAAGCTA CGACGTTTTT GAGCTGATGG ATGAAGAATT CGAGAGGAAG AGGATTGAAG 74346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAGCTA CGACGTTTTT GAGCTGATGG ATGAAGAATT CGAGAGGAAG AGGATTGAAG 333 TTAAGGCTAT GGAAGCTTTG GGCTGTGGGT TTGATTTTGC TAGCGATTTC AGGTTGAAGT 74406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGGCTAT GGAAGCTTTG GGCTGTGGGT TTGATTTTGC TAGCGATTTC AGGTTGAAGT 393 TCGTAAAAAG ATGTCCAAAC GGGGGTAGAT TGGTAATTTT GGATGAGAGT AATAGACGGA 74466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTAAAAAG ATGTCCAAAC GGGGGTAGAT TGGTAATTTT GGATGAGAGT AATAGACGGA 453 ACGTCGTCAT CCCCGGCGGC GTTACAATTC CCGATGTATC TGAAAATATC CGATGTGATA 74526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTCGTCAT CCCCGGCGGC GTTACAATTC CCGATGTATC TGAAAATATC CGATGTGATA 513 AAGGGGACCA CATTCGTTTC AAGTCTGATG 74556 || ||||||| |||||||||| |||||||||| AANGGGACCA CATTCGTTTC AAGTCTGATG 543 hqPGS_C09HBa0109D11.1+_SGN-E326008+ (73867 74118,74266 74556) ******************************************************************************** EST sequence 43 +strand 450 n (File: SGN-E325989+) 1 CAACATGTAT TTTACATTAA CTAACTAGAT CTAAAACAAA TATCGGACAC ATGTTAAAAA 61 ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 121 TTACCCTTTT TCACCTACTA TGTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 181 TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 241 ACTAAACATC TGCTCAAAAA ACCAACCAGA AAGGCTCAAG CTACGACGTT TTTGAGCTGA 301 TGGATGAAGA ATTCGAGAGG AAGACGATTG AAGTTAAGGC TATGGAAGCT TTGGGCTGTG 361 GGTTTGATTT TGCTAGCGAT TACAGGTTGA AGTTCGTAAA AAGATGTCCA AACCGGGGTC 421 GATTGGTAAT TTTGGATGAG AATAATAGAC Predicted gene structure (within gDNA segment 73267 to 75154): Exon 1 73867 74118 ( 252 n); cDNA 1 252 ( 252 n); score: 0.984 Intron 1 74119 74265 ( 147 n); Pd: 0.239 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 74266 74463 ( 198 n); cDNA 253 450 ( 198 n); score: 0.975 MATCH C09HBa0109D11.1+ SGN-E325989+ 0.980 450 1.000 C PGS_C09HBa0109D11.1+_SGN-E325989+ (73867 74118,74266 74463) Alignment (genomic DNA sequence = upper lines): CAACATGTAT TTTACATTAA CTAACTAGAT TTAAAACAAA TATCGGACAC ATATTAAAAA 73926 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| || ||||||| CAACATGTAT TTTACATTAA CTAACTAGAT CTAAAACAAA TATCGGACAC ATGTTAAAAA 60 ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 73986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAATTTGA AAAAATGATT TTTCAATTTC AGTTTTCATT TTAAAAGTGA AATTCCATTT 120 TTACCCTTTT TCACCTACTA TTTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 74046 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTACCCTTTT TCACCTACTA TGTAATTTTC ATTTTCTTTT AGAATTTTCT AGTTATGGTG 180 TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 74106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTTCT TCCTTCCTTC TTTTTAGTAT AACAAGATTA ATGGAGTCAA CAATTTACAG 240 ACGAAACATC TGGTCAAAAG TCAAACCTTT TCTCTTTCAC TTTCCTTCTC CCGTCATCTA 74166 || ||||||| || ACTAAACATC TG........ .......... .......... .......... .......... 252 CTTCTGACCA AAACCCCTCT ACCTATCCCC AAACCTTATA CCCCTCATTT TCTCAAATGG 74226 .......... .......... .......... .......... .......... .......... 252 GTATTTCTTA AAATTTCCAT TTTTTGTACT TTTTTTCAGC TCAAAAAACC AACCAGAAAG 74286 | |||||||||| |||||||||| .......... .......... .......... .........C TCAAAAAACC AACCAGAAAG 273 GCTCAAGCTA CGACGTTTTT GAGCTGATGG ATGAAGAATT CGAGAGGAAG AGGATTGAAG 74346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GCTCAAGCTA CGACGTTTTT GAGCTGATGG ATGAAGAATT CGAGAGGAAG ACGATTGAAG 333 TTAAGGCTAT GGAAGCTTTG GGCTGTGGGT TTGATTTTGC TAGCGATTTC AGGTTGAAGT 74406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTAAGGCTAT GGAAGCTTTG GGCTGTGGGT TTGATTTTGC TAGCGATTAC AGGTTGAAGT 393 TCGTAAAAAG ATGTCCAAAC GGGGGTAGAT TGGTAATTTT GGATGAGAGT AATAGAC 74463 |||||||||| |||||||||| ||||| ||| |||||||||| |||||||| | ||||||| TCGTAAAAAG ATGTCCAAAC CGGGGTCGAT TGGTAATTTT GGATGAGAAT AATAGAC 450 hqPGS_C09HBa0109D11.1+_SGN-E325989+ (73867 74118,74266 74463) ******************************************************************************** EST sequence 19 +strand 312 n (File: SGN-E212650+) 1 AACGTCGTCA TCCCCGGCGG CGTTACAATT CCCGATGTAT CTGAAAATAT CCGATGTGAT 61 AAAGGGGACC ACATTCGTTT CAAGTCTGAT GTTCTCGAAT TTAATCAGAT GTCAGAATTG 121 CTAAATCAAA AATCATCAAT ACATGGAAAG GTTCCATCAG GCTATCTAAA TGCCATTTTT 181 GATTTAAGTG GAGCCTGGTT GAATGATTCA GCAGATGCTA AGTACCTCGC GTTTGATGGT 241 TATTTTGTCT CGTTATACTA TTTGCACCTG ACAGCATCCC CATTAGTACT CCATGACCAA 301 GTGAAGAAAG CT Predicted gene structure (within gDNA segment 73866 to 76187): Exon 1 74466 74573 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 74574 75373 ( 800 n); Pd: 0.999 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 2 75374 75577 ( 204 n); cDNA 109 312 ( 204 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E212650+ 1.000 312 1.000 C PGS_C09HBa0109D11.1+_SGN-E212650+ (74466 74573,75374 75577) Alignment (genomic DNA sequence = upper lines): AACGTCGTCA TCCCCGGCGG CGTTACAATT CCCGATGTAT CTGAAAATAT CCGATGTGAT 74525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTCGTCA TCCCCGGCGG CGTTACAATT CCCGATGTAT CTGAAAATAT CCGATGTGAT 60 AAAGGGGACC ACATTCGTTT CAAGTCTGAT GTTCTCGAAT TTAATCAGGT TTCCATTTTT 74585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAAGGGGACC ACATTCGTTT CAAGTCTGAT GTTCTCGAAT TTAATCAG.. .......... 108 AATCTCCCTT TTAATGATTC TTTGCTTGGT TTAATTTTTT TTATTGTTTG ATTATATGCA 74645 .......... .......... .......... .......... .......... .......... 108 TAATTTTAGA TTCATGAAGT TGGTATGTGA ATGAATTTTG TAGTTTTAAC TGAATTTTTA 74705 .......... .......... .......... .......... .......... .......... 108 GTTAAAGATC AAATTTTTAG ATGATGTTCT AAAGTTTAGT GTTTGTATTT GATAAAGTTC 74765 .......... .......... .......... .......... .......... .......... 108 AAATTTTTAG ACAAGTTCTA TGAATTTTGT TCTAGTTAAT TAAGATGAAA TTAACCACTC 74825 .......... .......... .......... .......... .......... .......... 108 ATAAAGTTGA CTTAGAGAGC GTGTAAAAGA CGAGAAGTGG CATTAGGTGT TCTTTTAAAT 74885 .......... .......... .......... .......... .......... .......... 108 CTGTTTTCAA GTCTTGGTGG TAAGAGTTAC GTGGCATAGG AGGAAGGTAC TATAAGGATT 74945 .......... .......... .......... .......... .......... .......... 108 TAGTTGAGGT ATGCTGAAGC TGGCTTAGGA CAACTCGATT GTCAAAAACA AATAGTAGTA 75005 .......... .......... .......... .......... .......... .......... 108 GAAGTTGTTC TAATGACCAT TGTGAATTGA TTGTTATAAA AAGCATAGTA TAATCAATTC 75065 .......... .......... .......... .......... .......... .......... 108 CAACTTGTTT GGGATTGAGG TGCCGGTATT GTTGTAACTA CATAACTCTT TTTGGGTGTA 75125 .......... .......... .......... .......... .......... .......... 108 ATTTCTATTT GATGGCCAAT ACAAATTAGG GAAGTTGTTA CATCTTACTG ATTAGTTTTG 75185 .......... .......... .......... .......... .......... .......... 108 TCAAGGTTTT AGAATGATTA CTCCTCTCAT TCTATTTTAT ATGATGAACT TTCTCGGTTG 75245 .......... .......... .......... .......... .......... .......... 108 GTCTATTTTT TTTTTGAAAA AGATATCTTT TTATATATTA TTGACAAAGT GATCTTTAGA 75305 .......... .......... .......... .......... .......... .......... 108 GTTGTATTTT TGTCGAGCGT GTTATTGGCT GTCTCATTAG CTCCAAATTT TCCCTAAATT 75365 .......... .......... .......... .......... .......... .......... 108 CATTGCAGAT GTCAGAATTG CTAAATCAAA AATCATCAAT ACATGGAAAG GTTCCATCAG 75425 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AT GTCAGAATTG CTAAATCAAA AATCATCAAT ACATGGAAAG GTTCCATCAG 160 GCTATCTAAA TGCCATTTTT GATTTAAGTG GAGCCTGGTT GAATGATTCA GCAGATGCTA 75485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATCTAAA TGCCATTTTT GATTTAAGTG GAGCCTGGTT GAATGATTCA GCAGATGCTA 220 AGTACCTCGC GTTTGATGGT TATTTTGTCT CGTTATACTA TTTGCACCTG ACAGCATCCC 75545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACCTCGC GTTTGATGGT TATTTTGTCT CGTTATACTA TTTGCACCTG ACAGCATCCC 280 CATTAGTACT CCATGACCAA GTGAAGAAAG CT 75577 |||||||||| |||||||||| |||||||||| || CATTAGTACT CCATGACCAA GTGAAGAAAG CT 312 hqPGS_C09HBa0109D11.1+_SGN-E212650+ (74466 74573,75374 75577) ******************************************************************************** EST sequence 60 +strand 384 n (File: SGN-E274012+) 1 TCAGCCATGC AATAAATTTA TATCTACGCT ATAAGCCTGC TCTAGAGGAT TTACAGTGTT 61 TCCTCGAGTT TCAAGTTCCT AGCCAGTGGG CGCCATTGTT CTGCGAGCTG CCTCTTAGCC 121 ATCAAAGAAA AGTGGCATCT TGCCCTGCAT TGCAGTTCTG TTTATTCGGC CCAAAGCTTT 181 GTGTGAGACC TACCCAGGTT ACAAGTGGTC AAAAACCCGT CATTGGTTTG CGCTTGTATT 241 TAGAAGGGAA GAAATGCAAC CACTTAGCCA TACATGTACA ACATCTTTCT AGTTTACCAA 301 ACATTATGGC ATCTAAGTCT GTTAATAACC TAACCTTATG CAAGCCATGT CAATGGCGAG 361 GCTCCGATGA TTATGAATCT AGCG Predicted gene structure (within gDNA segment 76277 to 78894): Exon 1 76877 76906 ( 30 n); cDNA 1 30 ( 30 n); score: 1.000 Intron 1 76907 77755 ( 849 n); Pd: 0.958 (s: 0), Pa: 0.690 (s: 1.00) Exon 2 77756 77922 ( 167 n); cDNA 31 197 ( 167 n); score: 1.000 Intron 2 77923 78097 ( 175 n); Pd: 0.967 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 78098 78284 ( 187 n); cDNA 198 384 ( 187 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E274012+ 1.000 384 1.000 C PGS_C09HBa0109D11.1+_SGN-E274012+ (76877 76906,77756 77922,78098 78284) Alignment (genomic DNA sequence = upper lines): TCAGCCATGC AATAAATTTA TATCTACGCT GTAAGTATTT CATAGTCTTT TATAGATGAG 76936 |||||||||| |||||||||| |||||||||| TCAGCCATGC AATAAATTTA TATCTACGCT .......... .......... .......... 30 AAACATATTT TCCATCCATT AATTGTGTAT AATCAGATAA AAAGGTGCAT TGCTGCCTCT 76996 .......... .......... .......... .......... .......... .......... 30 CTTTTATATA AAAAAATAAG TATTGTGTTT GTGTGAATTC CTCCTCATCA ATTCCTTGAT 77056 .......... .......... .......... .......... .......... .......... 30 GAGATCTTTT GTGTGAATAC AAAGTTACCT ATTTAAAAAA ATAATAATAA TAAGTTGCGT 77116 .......... .......... .......... .......... .......... .......... 30 GTTTCCGATA CTGTTGCAGA TATTATTTTA ATTAGGTTTT AGGGATTTCT ATAGTGTTCC 77176 .......... .......... .......... .......... .......... .......... 30 AAAATGTAAA ACCGACGAAA TTAGATTAAC CTACAACAAT ATCAAATTTG GTCATGCAAG 77236 .......... .......... .......... .......... .......... .......... 30 TCCAAATTAG AGATTTTAAA GATTTCAAGA ATTTGTTTTG GCTAATTTTT GTTAATGAAT 77296 .......... .......... .......... .......... .......... .......... 30 GTTAATGTAG CCGAATACAT TTTTTGCTAT CATATCTCTA TGAGGGTCTA GTGTTTATCA 77356 .......... .......... .......... .......... .......... .......... 30 CCTTTTTTTA CATCTTGACC ATTTATTTGT AAACTAGTAG TTCTACTCAC TGTGGCTTTA 77416 .......... .......... .......... .......... .......... .......... 30 TCTACCCTGC AGTATTTTAC TGTGACTAAA ACAAGGCTAT CTTCTGATAT GGTTCAATTG 77476 .......... .......... .......... .......... .......... .......... 30 AAATTTACAA AGTGCATATA TTCTGAGGCT GTTTCTTTTT CTTGTCTTGT GATCATTTTT 77536 .......... .......... .......... .......... .......... .......... 30 CTTTGACATT CTCTTGAACT CCTCCGCATA TTTACTTACC TTGACAAGAA ATAATTATCC 77596 .......... .......... .......... .......... .......... .......... 30 GTACAGAAGA ATGTGAGGAA CTTGTTTTCT TAATAAGTTC TAGTATTTAG CATATTTCAT 77656 .......... .......... .......... .......... .......... .......... 30 AAAATCGGCG TATTTTTCTT ATCTATCAGC TTTTTCTTCT TCATTTTTCT GTTCAAGAAA 77716 .......... .......... .......... .......... .......... .......... 30 GACGATGGTA GTTTTATCCG CGATTTGTTT CATTCTCAGA TAAGCCTGCT CTAGAGGATT 77776 | |||||||||| |||||||||| .......... .......... .......... .........A TAAGCCTGCT CTAGAGGATT 51 TACAGTGTTT CCTCGAGTTT CAAGTTCCTA GCCAGTGGGC GCCATTGTTC TGCGAGCTGC 77836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGTGTTT CCTCGAGTTT CAAGTTCCTA GCCAGTGGGC GCCATTGTTC TGCGAGCTGC 111 CTCTTAGCCA TCAAAGAAAA GTGGCATCTT GCCCTGCATT GCAGTTCTGT TTATTCGGCC 77896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTAGCCA TCAAAGAAAA GTGGCATCTT GCCCTGCATT GCAGTTCTGT TTATTCGGCC 171 CAAAGCTTTG TGTGAGACCT ACCCAGGTAC TTCTTTGGTG TTTCTTTCTT AGCAAAAGGA 77956 |||||||||| |||||||||| |||||| CAAAGCTTTG TGTGAGACCT ACCCAG.... .......... .......... .......... 197 CCGCTGCTTT ATTACAAAAA TAATAAAAGT TGAAACTATA TGTGCTTCAT TCCAATGAGG 78016 .......... .......... .......... .......... .......... .......... 197 TATTGGTCTT GCCATGGCTT CTAATGCACT AGTATTGATG TTCATGATGA CACCTAATCG 78076 .......... .......... .......... .......... .......... .......... 197 ATATGTTCTT CTTATATGTA GGTTACAAGT GGTCAAAAAC CCGTCATTGG TTTGCGCTTG 78136 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTACAAGT GGTCAAAAAC CCGTCATTGG TTTGCGCTTG 236 TATTTAGAAG GGAAGAAATG CAACCACTTA GCCATACATG TACAACATCT TTCTAGTTTA 78196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAGAAG GGAAGAAATG CAACCACTTA GCCATACATG TACAACATCT TTCTAGTTTA 296 CCAAACATTA TGGCATCTAA GTCTGTTAAT AACCTAACCT TATGCAAGCC ATGTCAATGG 78256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACATTA TGGCATCTAA GTCTGTTAAT AACCTAACCT TATGCAAGCC ATGTCAATGG 356 CGAGGCTCCG ATGATTATGA ATCTAGCG 78284 |||||||||| |||||||||| |||||||| CGAGGCTCCG ATGATTATGA ATCTAGCG 384 hqPGS_C09HBa0109D11.1+_SGN-E274012+ (76877 76906,77756 77922,78098 78284) ******************************************************************************** EST sequence 42 +strand 582 n (File: SGN-E276485+) 1 TCTACGCTAT AAGCCTGCTC TAGAGGATTT ACAGTGTTTC CTCGAGTTTC AAGTTCCTAG 61 CCAGTGGGCG CCATTGTTCT GCGAGCTGCC TCTTAGCCAT CAAAGAAAAG TGGCATCTTG 121 CCCTGCATTG CAGTTCTGTT TATTCGGCCC AAAGCTTTGT GTGAGACCTA CCCAGGTTAC 181 AAGTGGTCAA AAACCCGTCA TTGGTTTGCG CTTGTATTTA GAAGGGAAGA AATGCAACCA 241 CTTAGCCATA CATGTACAAC ATCTTTCTAG TTTACCAAAC ATTATGGCAT CTAAGTCTGT 301 TAATAACCTA ACCTTATGCA AGCCATGTCA ATGGCGAGGC TCCGATGATT ATGAATCTAG 361 CGACCAATTC TTAGATCCTG TCAGATGGCC GAGATATTCC AACGTGTGCT CATCTGTAGT 421 TAAGCATGAT CCAAGCTGGA TGCAGGGCGA AACGAGTGGC GTCTTTGTGG TAACTGGTGC 481 ACACCTTGTC AGCAAAGGGA AGTGGCCTAA GACAGTGCTT CACCTGCGTC TACTTTTCAC 541 CTATCTTCCT AACTGCACAA TACGAAAGAC AGAGTGGGCA GC Predicted gene structure (within gDNA segment 77076 to 79114): Exon 1 77756 77922 ( 167 n); cDNA 9 175 ( 167 n); score: 1.000 Intron 1 77923 78097 ( 175 n); Pd: 0.967 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 78098 78504 ( 407 n); cDNA 176 582 ( 407 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E276485+ 1.000 574 0.986 C PGS_C09HBa0109D11.1+_SGN-E276485+ (77756 77922,78098 78504) Alignment (genomic DNA sequence = upper lines): ATAAGCCTGC TCTAGAGGAT TTACAGTGTT TCCTCGAGTT TCAAGTTCCT AGCCAGTGGG 77815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCCTGC TCTAGAGGAT TTACAGTGTT TCCTCGAGTT TCAAGTTCCT AGCCAGTGGG 68 CGCCATTGTT CTGCGAGCTG CCTCTTAGCC ATCAAAGAAA AGTGGCATCT TGCCCTGCAT 77875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCATTGTT CTGCGAGCTG CCTCTTAGCC ATCAAAGAAA AGTGGCATCT TGCCCTGCAT 128 TGCAGTTCTG TTTATTCGGC CCAAAGCTTT GTGTGAGACC TACCCAGGTA CTTCTTTGGT 77935 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGCAGTTCTG TTTATTCGGC CCAAAGCTTT GTGTGAGACC TACCCAG... .......... 175 GTTTCTTTCT TAGCAAAAGG ACCGCTGCTT TATTACAAAA ATAATAAAAG TTGAAACTAT 77995 .......... .......... .......... .......... .......... .......... 175 ATGTGCTTCA TTCCAATGAG GTATTGGTCT TGCCATGGCT TCTAATGCAC TAGTATTGAT 78055 .......... .......... .......... .......... .......... .......... 175 GTTCATGATG ACACCTAATC GATATGTTCT TCTTATATGT AGGTTACAAG TGGTCAAAAA 78115 |||||||| |||||||||| .......... .......... .......... .......... ..GTTACAAG TGGTCAAAAA 193 CCCGTCATTG GTTTGCGCTT GTATTTAGAA GGGAAGAAAT GCAACCACTT AGCCATACAT 78175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGTCATTG GTTTGCGCTT GTATTTAGAA GGGAAGAAAT GCAACCACTT AGCCATACAT 253 GTACAACATC TTTCTAGTTT ACCAAACATT ATGGCATCTA AGTCTGTTAA TAACCTAACC 78235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAACATC TTTCTAGTTT ACCAAACATT ATGGCATCTA AGTCTGTTAA TAACCTAACC 313 TTATGCAAGC CATGTCAATG GCGAGGCTCC GATGATTATG AATCTAGCGA CCAATTCTTA 78295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGCAAGC CATGTCAATG GCGAGGCTCC GATGATTATG AATCTAGCGA CCAATTCTTA 373 GATCCTGTCA GATGGCCGAG ATATTCCAAC GTGTGCTCAT CTGTAGTTAA GCATGATCCA 78355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCTGTCA GATGGCCGAG ATATTCCAAC GTGTGCTCAT CTGTAGTTAA GCATGATCCA 433 AGCTGGATGC AGGGCGAAAC GAGTGGCGTC TTTGTGGTAA CTGGTGCACA CCTTGTCAGC 78415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGATGC AGGGCGAAAC GAGTGGCGTC TTTGTGGTAA CTGGTGCACA CCTTGTCAGC 493 AAAGGGAAGT GGCCTAAGAC AGTGCTTCAC CTGCGTCTAC TTTTCACCTA TCTTCCTAAC 78475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGGAAGT GGCCTAAGAC AGTGCTTCAC CTGCGTCTAC TTTTCACCTA TCTTCCTAAC 553 TGCACAATAC GAAAGACAGA GTGGGCAGC 78504 |||||||||| |||||||||| ||||||||| TGCACAATAC GAAAGACAGA GTGGGCAGC 582 hqPGS_C09HBa0109D11.1+_SGN-E276485+ (77756 77922,78098 78504) ******************************************************************************** EST sequence 10 +strand 790 n (File: SGN-E263116+) 1 CGAGCTGCCT CTTAGCCATC AAAGAAAAGT GGCATCTTGC CCTGCATTGC AGTTCTGTTT 61 ATTCGGCCCA AAGCTTTGTG TGAGACCTAC CCAGGTTACA AGTGGTCAAA AACCCGTCAT 121 TGGTTTGCGC TTGTATTTAG AAGGGAAGAA ATGCAACCAC TTAGCCATAC ATGTACAACA 181 TCTTTCTAGT TTACCAAACA TTATGGCATC TAAGTCTGTT AATAACCTAA CCTTATGCAA 241 GCCATGTCAA TGGCGAGGCT CCGATGATTA TGAATCTAGC GACCAATTCT TAGATCCTGT 301 CAGATGGCCG AGATATTCCA ACGTGTGCTC ATCTGTAGTT AAGCATGATC CAAGCTGGAT 361 GCAGGGCGAA ACGAGTGGCG TCTTTGTGGT AACTGGTGCA CACCTTGTCA GCAAAGGGAA 421 GTGGCCTAAG ACAGTGCTTC ACCTGCGTCT ACTTTTCACC TATCTTCCTA ACTGCACAAT 481 ACGAAAGACA GAGTGGGCAG CTACACCAGA GGGTACTCAT AGGTCAAGTT TCTTAACAAA 541 TCTCAGCACA ACTTTTACTT TCACTCAGCG GACAAAGACA GATGCTGCAC CAAAGCAGCT 601 TCCTGCTGCT CTTAACTCGG GCGTATATCC AGACGGACCT CCAGTACCAG TTCGATCAAC 661 AAAGCTGCTC AAGTATGTAG ATACGGCTGA GATTGCACGA GGGCCATACG ACACTCCTGG 721 ACATTGGTTG GTACTGCTGC TAGCTTGTTA CAGAAGGTGG GAAGATANGG TTGCATGTGA 781 AGTTGCTCTA Predicted gene structure (within gDNA segment 77229 to 79612): Exon 1 77829 77922 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 77923 78097 ( 175 n); Pd: 0.967 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 78098 78796 ( 699 n); cDNA 95 790 ( 696 n); score: 0.993 MATCH C09HBa0109D11.1+ SGN-E263116+ 0.994 793 1.004 C PGS_C09HBa0109D11.1+_SGN-E263116+ (77829 77922,78098 78796) Alignment (genomic DNA sequence = upper lines): CGAGCTGCCT CTTAGCCATC AAAGAAAAGT GGCATCTTGC CCTGCATTGC AGTTCTGTTT 77888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGCTGCCT CTTAGCCATC AAAGAAAAGT GGCATCTTGC CCTGCATTGC AGTTCTGTTT 60 ATTCGGCCCA AAGCTTTGTG TGAGACCTAC CCAGGTACTT CTTTGGTGTT TCTTTCTTAG 77948 |||||||||| |||||||||| |||||||||| |||| ATTCGGCCCA AAGCTTTGTG TGAGACCTAC CCAG...... .......... .......... 94 CAAAAGGACC GCTGCTTTAT TACAAAAATA ATAAAAGTTG AAACTATATG TGCTTCATTC 78008 .......... .......... .......... .......... .......... .......... 94 CAATGAGGTA TTGGTCTTGC CATGGCTTCT AATGCACTAG TATTGATGTT CATGATGACA 78068 .......... .......... .......... .......... .......... .......... 94 CCTAATCGAT ATGTTCTTCT TATATGTAGG TTACAAGTGG TCAAAAACCC GTCATTGGTT 78128 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTACAAGTGG TCAAAAACCC GTCATTGGTT 125 TGCGCTTGTA TTTAGAAGGG AAGAAATGCA ACCACTTAGC CATACATGTA CAACATCTTT 78188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCTTGTA TTTAGAAGGG AAGAAATGCA ACCACTTAGC CATACATGTA CAACATCTTT 185 CTAGTTTACC AAACATTATG GCATCTAAGT CTGTTAATAA CCTAACCTTA TGCAAGCCAT 78248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTTTACC AAACATTATG GCATCTAAGT CTGTTAATAA CCTAACCTTA TGCAAGCCAT 245 GTCAATGGCG AGGCTCCGAT GATTATGAAT CTAGCGACCA ATTCTTAGAT CCTGTCAGAT 78308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATGGCG AGGCTCCGAT GATTATGAAT CTAGCGACCA ATTCTTAGAT CCTGTCAGAT 305 GGCCGAGATA TTCCAACGTG TGCTCATCTG TAGTTAAGCA TGATCCAAGC TGGATGCAGG 78368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCGAGATA TTCCAACGTG TGCTCATCTG TAGTTAAGCA TGATCCAAGC TGGATGCAGG 365 GCGAAACGAG TGGCGTCTTT GTGGTAACTG GTGCACACCT TGTCAGCAAA GGGAAGTGGC 78428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAAACGAG TGGCGTCTTT GTGGTAACTG GTGCACACCT TGTCAGCAAA GGGAAGTGGC 425 CTAAGACAGT GCTTCACCTG CGTCTACTTT TCACCTATCT TCCTAACTGC ACAATACGAA 78488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGACAGT GCTTCACCTG CGTCTACTTT TCACCTATCT TCCTAACTGC ACAATACGAA 485 AGACAGAGTG GGCAGCTACA CCAGAGGGTA CTCATAGGTC AAGTTTCTTA ACAAATCTCA 78548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAGAGTG GGCAGCTACA CCAGAGGGTA CTCATAGGTC AAGTTTCTTA ACAAATCTCA 545 GCACAACTTT TACTTTCACT CAGCGGACAA AGACAGATGC TGCACCAAAG CAGCTTCCTG 78608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAACTTT TACTTTCACT CAGCGGACAA AGACAGATGC TGCACCAAAG CAGCTTCCTG 605 CTGCTCTTAA CTCGGGCGTA TATCCAGACG GACCTCCAGT ACCAGTTCGA TCAACAAAGC 78668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTCTTAA CTCGGGCGTA TATCCAGACG GACCTCCAGT ACCAGTTCGA TCAACAAAGC 665 TGCTCAAGTA TGTAGATACG GCTGAGATTG CACGAGGGCC ATACGACACT CCTGGACATT 78728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCAAGTA TGTAGATACG GCTGAGATTG CACGAGGGCC ATACGACACT CCTGGACATT 725 GGTTGGTAAC TGCTGCTAAG CTTGTTACAG AAGGTGGGAA GATAGGTTTG CATGTGAAGT 78788 ||||||| || ||||||| || |||||||||| |||||||||| |||| | ||| ||||||||| GGTTGGT-AC TGCTGCT-AG CTTGTTACAG AAGGTGGGAA GATANGGTTG CATGTGAAG- 782 TTGCTCTA 78796 |||||||| TTGCTCTA 790 hqPGS_C09HBa0109D11.1+_SGN-E263116+ (77829 77922,78098 78796) ******************************************************************************** EST sequence 1 +strand 590 n (File: SGN-E302377+) 1 TTTACAGTGT TTCCTCGAGT TTCAAGTTCC TAGCCAGTGG GCGCCATTGT TCTGCGAGCT 61 GCCTCTTAGC CATCAAAGAA AAGTGGCATC TTGCCCTGCA TTGCAGTTCT GTTTATTCGG 121 CCCAAAGCTT TGTGTGAGAC CTACCCAGGT ACTTCTTTGG TGTTTCTTTC TTAGCAAAAG 181 GACCGCTGCT TTATTACAAA AATAATAAAA GTTGAAACTA TATGTGCTTC ATTCCAATGA 241 GGTATTGGTC TTGCCATGGC TTCTAATGCA CTAGTATTGA TGTTCATGAT GACACCTAAT 301 CGATATGTTC TTCTTATATG TAGGTTACAA GTGGTCAAAA ACCCGTCATT GGTTTGCGCT 361 TGTATTTAGA AGGGAAGAAA TGCAACCACT TAGCCATACA TGTACAACAT CTTTCTAGTT 421 TACCAAACAT TATGGCATCT AAGTCTGTTA ATAACCTAAC CTTATGCAAG CCATGTCAAT 481 GGCGAGGCTC CGATGATTAT GAATCTAGCG ACCAATTCTT AGATCCTGTC AGATGGCCGA 541 GATATTCCAA CGTGTGCTCA TCTGTAGTTA AGCATGATCC AAGCTGGATG Predicted gene structure (within gDNA segment 77175 to 78974): Exon 1 77775 78364 ( 590 n); cDNA 1 590 ( 590 n); score: 1.000 MATCH C09HBa0109D11.1+ SGN-E302377+ 1.000 590 1.000 C PGS_C09HBa0109D11.1+_SGN-E302377+ (77775 78364) Alignment (genomic DNA sequence = upper lines): TTTACAGTGT TTCCTCGAGT TTCAAGTTCC TAGCCAGTGG GCGCCATTGT TCTGCGAGCT 77834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAGTGT TTCCTCGAGT TTCAAGTTCC TAGCCAGTGG GCGCCATTGT TCTGCGAGCT 60 GCCTCTTAGC CATCAAAGAA AAGTGGCATC TTGCCCTGCA TTGCAGTTCT GTTTATTCGG 77894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTCTTAGC CATCAAAGAA AAGTGGCATC TTGCCCTGCA TTGCAGTTCT GTTTATTCGG 120 CCCAAAGCTT TGTGTGAGAC CTACCCAGGT ACTTCTTTGG TGTTTCTTTC TTAGCAAAAG 77954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAAGCTT TGTGTGAGAC CTACCCAGGT ACTTCTTTGG TGTTTCTTTC TTAGCAAAAG 180 GACCGCTGCT TTATTACAAA AATAATAAAA GTTGAAACTA TATGTGCTTC ATTCCAATGA 78014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCGCTGCT TTATTACAAA AATAATAAAA GTTGAAACTA TATGTGCTTC ATTCCAATGA 240 GGTATTGGTC TTGCCATGGC TTCTAATGCA CTAGTATTGA TGTTCATGAT GACACCTAAT 78074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTGGTC TTGCCATGGC TTCTAATGCA CTAGTATTGA TGTTCATGAT GACACCTAAT 300 CGATATGTTC TTCTTATATG TAGGTTACAA GTGGTCAAAA ACCCGTCATT GGTTTGCGCT 78134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATGTTC TTCTTATATG TAGGTTACAA GTGGTCAAAA ACCCGTCATT GGTTTGCGCT 360 TGTATTTAGA AGGGAAGAAA TGCAACCACT TAGCCATACA TGTACAACAT CTTTCTAGTT 78194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATTTAGA AGGGAAGAAA TGCAACCACT TAGCCATACA TGTACAACAT CTTTCTAGTT 420 TACCAAACAT TATGGCATCT AAGTCTGTTA ATAACCTAAC CTTATGCAAG CCATGTCAAT 78254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAAACAT TATGGCATCT AAGTCTGTTA ATAACCTAAC CTTATGCAAG CCATGTCAAT 480 GGCGAGGCTC CGATGATTAT GAATCTAGCG ACCAATTCTT AGATCCTGTC AGATGGCCGA 78314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGAGGCTC CGATGATTAT GAATCTAGCG ACCAATTCTT AGATCCTGTC AGATGGCCGA 540 GATATTCCAA CGTGTGCTCA TCTGTAGTTA AGCATGATCC AAGCTGGATG 78364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTCCAA CGTGTGCTCA TCTGTAGTTA AGCATGATCC AAGCTGGATG 590 hqPGS_C09HBa0109D11.1+_SGN-E302377+ (77775 78364) ******************************************************************************** EST sequence 118 -strand 228 n (File: SGN-E398116-) 1 CGAATCATAA TTTTTTGCGT GTACATATTC TGAGGTAGCC TTGTCCTTTT CTTTATATCA 61 TTTTTATTCA GTTACATTTA GTCTTATCAG CTTCCAATAT CTTGATGATA TATCATATTG 121 TTTAATTTAT CCAAGAAATG GCCAACAGGG GAGGAAAATG TTATAAAAGG GTCCAGAAGA 181 ATTTAGTGGA AGAANTCGAT TTATTTAAAG GTCTTTCCAA AAAAAAAA Predicted gene structure (within gDNA segment 78039 to 79944): Exon 1 78811 79037 ( 227 n); cDNA 1 228 ( 228 n); score: 0.910 MATCH C09HBa0109D11.1+ SGN-E398116- 0.910 227 0.996 C PGS_C09HBa0109D11.1+_SGN-E398116- (78811 79037) Alignment (genomic DNA sequence = upper lines): CGAATCATAA TTTCTTGTGT GTACATATTC TGAGGTAGCC TTGTCCTTTT CTTTATATCA 78870 |||||||||| ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| CGAATCATAA TTTTTTGCGT GTACATATTC TGAGGTAGCC TTGTCCTTTT CTTTATATCA 60 TTTTTATTCA GTTACATTTA GTCTTATCAG CTTCCAATAT CTTGATGATA TATCATATTG 78930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTATTCA GTTACATTTA GTCTTATCAG CTTCCAATAT CTTGATGATA TATCATATTG 120 TTTAATTTAT CCAAGAAATG GCCAACAGGG GAGGAAAATG TTATAGTATT GTACAGAAGA 78990 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | || ||||||| TTTAATTTAT CCAAGAAATG GCCAACAGGG GAGGAAAATG TTATAAAAGG GTCCAGAAGA 180 ATTTAGTGGA AGAA-TCGAT TTATTTTTTG TTCTTTCCAC CTTTTCAA 79037 |||||||||| |||| ||||| |||||| | |||||||| || ATTTAGTGGA AGAANTCGAT TTATTTAAAG GTCTTTCCAA AAAAAAAA 228 hqPGS_C09HBa0109D11.1+_SGN-E398116- (78811 79037) ******************************************************************************** EST sequence 40 +strand 780 n (File: SGN-E543331+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTCCGG TTCTAACAAT TTAAACGCGA AAACATTGTT ATTGTAGTTG Predicted gene structure (within gDNA segment 80013 to 88491): Exon 1 81738 81743 ( 6 n); cDNA 455 460 ( 6 n); score: 1.000 Intron 1 81744 85329 (3586 n); Pd: 0.481 (s: 0), Pa: 0.000 (s: 0) Exon 2 85330 85353 ( 24 n); cDNA 461 483 ( 23 n); score: 0.750 Intron 2 85354 85874 ( 521 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 85875 85914 ( 40 n); cDNA 484 523 ( 40 n); score: 0.900 Intron 3 85915 86048 ( 134 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.86) Exon 4 86049 86275 ( 227 n); cDNA 524 749 ( 226 n); score: 0.881 MATCH C09HBa0109D11.1+ SGN-E543331+ 0.881 297 0.381 C PGS_C09HBa0109D11.1+_SGN-E543331+ (81738 81743,85330 85353,85875 85914,86049 86275) Alignment (genomic DNA sequence = upper lines): CATAAAGTGG GGTCTCTCCC AAATTGTTTT GCACATAAAC TAAGTCCTTC TCAATTCTCA 81797 |||||| CATAAA.... .......... .......... .......... .......... .......... 460 AAATCCTCTC CACCATATCT TTTTTACCTG TCGTTGAAAA CATAATTAAG TAAATACACG 81857 .......... .......... .......... .......... .......... .......... 460 TGTCTTCTCA AGCGTGCTTG GCTGATAAAA AAAGAATCAA GTTAGCATGT GTAACTAAGT 81917 .......... .......... .......... .......... .......... .......... 460 AAATAAAAGT GTTCTCTCTG ACAGTTTAAA CTTTTAAATG AGACAGTCAC ACATTTCAAC 81977 .......... .......... .......... .......... .......... .......... 460 ATTACCAAAT CTACGTCACA CATTTCAACA TTACCAAATC TAGCAGCTTC GTGCAACGGT 82037 .......... .......... .......... .......... .......... .......... 460 GTATCTCCAC TATTGTTCCT AGTTTCGAGA TCTTGAACAC TCAAATTAGG TTCAAGAATT 82097 .......... .......... .......... .......... .......... .......... 460 TCGAAACCAG CCACATTGCC ATTAACAGCA AGGAAGTGAA GGATGGTGTC ACCCCGATTA 82157 .......... .......... .......... .......... .......... .......... 460 TCAATCGGGG AGACACCTTC TTCTTTCCAA AAATCGCGTA AAACCTGGAG AGATTGCAGT 82217 .......... .......... .......... .......... .......... .......... 460 ACTCCTGATG ATGATGATGA TGCAGCTTTG TAAGCTGCTG ATCTACATCT TGCTTTAGTA 82277 .......... .......... .......... .......... .......... .......... 460 CTGAAGTTGT TCTGCATTTT GCTTTCCCTT ATTTTTGTGT TCTTTTGAGT ATATTTTGTG 82337 .......... .......... .......... .......... .......... .......... 460 ATGAATGAGA TTTTATTCAG CAAATTAAAA GTTGTTAAGG CTTGGTTACT AATTGGAATA 82397 .......... .......... .......... .......... .......... .......... 460 ACAAAAAGAA AAAAGCTAAT GTACAAATCA CTTGTCTTTG ATTGCTTTTT CTGATTTAAA 82457 .......... .......... .......... .......... .......... .......... 460 TTATATTCCT TTGTGGAAAT TTTACAAAAA ACAGTACTAC TACTTAATAA CAACTTTATT 82517 .......... .......... .......... .......... .......... .......... 460 CATTATGTTC CAGTATATTT GTCCATGATG ATTCTTATTA TTGCTTCATA TCCAAGGAAT 82577 .......... .......... .......... .......... .......... .......... 460 GAAAAATTCT ACTCCGTATA ATTTCACTTT TCTTGCAAAA CATATTTTGA TAAAAAATGA 82637 .......... .......... .......... .......... .......... .......... 460 TAGACTTATT GTTGTTCGAA TAACTTCATC TTCATAAGGA CATGACCCTA GATAGGAAGG 82697 .......... .......... .......... .......... .......... .......... 460 TATGGAGGTC GATAATTAAT GTAGAACGTT TGGAAATAGC TACTCGAGTG TGGTCTCCAT 82757 .......... .......... .......... .......... .......... .......... 460 ATCCTCTTTT CCTTATTAAT TACTCCCTTT GTTTCGTAAA GGATGACCTA GTTTGACTTC 82817 .......... .......... .......... .......... .......... .......... 460 GAACGGAGTT TAAAAAAGGA AAAAGACTTT TTAATCTCGT GGTTCTAAAT TAAATTTAAT 82877 .......... .......... .......... .......... .......... .......... 460 GTTATGTCGA ATGTATAAAT ATGCCCTTTA ATCTTGTGCT CGTAAACATG CCATGTAAAA 82937 .......... .......... .......... .......... .......... .......... 460 AGTTAAAGTG TTGCCAAAAA AGGAAAGGGA TCATCCTTTT TGAAACACAC ACAAAAAAAA 82997 .......... .......... .......... .......... .......... .......... 460 TAGGAACATT CTTTTTTAAA CGAAGGAAGT AGAACATAGT TGATAGTAGT ATTATGTTTT 83057 .......... .......... .......... .......... .......... .......... 460 TTACTCTTCA ATATGTTTTA CGTGCTTTAT TTTGCCTAGT ATCTTTATAT TTCTGTGTCA 83117 .......... .......... .......... .......... .......... .......... 460 TTTTTTTCTT CTTATAATCA CTCATCGATA AACTTCTCTT TTCAGCCAAA GATCTATCGG 83177 .......... .......... .......... .......... .......... .......... 460 AAATTGCTTC TCAACTCCAC AAGGATTTAT ATACATTTTA TACTCCACAG ACCTCACTTA 83237 .......... .......... .......... .......... .......... .......... 460 TTGAATTACA TTGAATATGT TATATCTATT GTTGACACCC GATTTCGAAC CTCCATAATA 83297 .......... .......... .......... .......... .......... .......... 460 TAGATTAATC ATCGAACTTC TTCAATTTTA AACGATTTAA AATAAATATT TTTATAAAGT 83357 .......... .......... .......... .......... .......... .......... 460 TTCAAAAATA GTTTACAAGT TATTTTAAAT AGTTTTGTTA CTTTTTATAA TTTTTAAATT 83417 .......... .......... .......... .......... .......... .......... 460 AATATATATG TATTAGATAA TTATGTCTAT TTTTACAAAT ATTCAAAAAT CGTCTCAAAA 83477 .......... .......... .......... .......... .......... .......... 460 GATTTTAATT TTACTTAAAT AGTTGGTTAT TACTTATATT TTTAAGTAAT TAATTTATAA 83537 .......... .......... .......... .......... .......... .......... 460 TTAAGTTAAT TTTGTTAAAA TTAAAAAGTT CATTAATTAA TTATATTATA TTACTATGTA 83597 .......... .......... .......... .......... .......... .......... 460 GGCTAATTGT CTAAAATTAA CTCAATCATG AGGCCATCCA TTCATTTATA TTTGGGCCAA 83657 .......... .......... .......... .......... .......... .......... 460 TTTCCTTCAT TCCAACGGCA GCCCATTAAC AATAGAAACG AGAAGCCCAG TCCATAAACC 83717 .......... .......... .......... .......... .......... .......... 460 CATTACAATG TTTCTTCTTC ACCTAGCGAT CCATTACTAA AAATTTTGTG AATCAATTAT 83777 .......... .......... .......... .......... .......... .......... 460 AGCATCAACT AATTTTACTC TATTATCAAA TATAGATACC GTAAACCACC ATATAGTTAT 83837 .......... .......... .......... .......... .......... .......... 460 TCATTTGTTA CTCGTATTGC ATAATAGCAT GATTCTGATT TTCTTATTTT TAAAAGACTA 83897 .......... .......... .......... .......... .......... .......... 460 TCATTTCAAA TATATCATAA TAATTACTAT AATATTTGAA ATCCAAACTT TGCTTGGCGT 83957 .......... .......... .......... .......... .......... .......... 460 TATTGATAAT GGTGCCAATT AAATCAGTGG TTTTCAGCTT AAATATTTGC ACACTTGAAA 84017 .......... .......... .......... .......... .......... .......... 460 TTTCTGACAC TGAGACCATC TACTGTTTAA TATCTACCGA AAAATTTGTA AAAACAGCAT 84077 .......... .......... .......... .......... .......... .......... 460 ATATAAAATC AAAAGTCCTC GAGAGGTATG ATAATTAATG CTCAATTTGA GGAAGCAAAT 84137 .......... .......... .......... .......... .......... .......... 460 AATGAGATTG GAAGATTTAA CATTAAATAA ATAAATTGCA GAACAATAAC TTCGAGAATA 84197 .......... .......... .......... .......... .......... .......... 460 TATTATTAAA TAACCACAAA ACTCAAGATG AACTAATAAC GTATGAACAA TTTGACCACA 84257 .......... .......... .......... .......... .......... .......... 460 CTAATTTAAC AAATACGCGA AAACTTTTGC TCACAATTTA CGACTAAGCA AATCAAATAT 84317 .......... .......... .......... .......... .......... .......... 460 CATACGACCG ACAAAAAAAA TGAAACTCAA CACTAAATAA CCGCACAAAA TTGAAAAGCA 84377 .......... .......... .......... .......... .......... .......... 460 CTGGCAAATT CTGTCACAGT TTGTTAAAAG CAAGATAACA TATTAAAATA CAACAAAAAA 84437 .......... .......... .......... .......... .......... .......... 460 ATTACAGAAC AATAGAAAAA TTTCAAGATT TAAACAAACG AAGTAATTAA AAAGAAAAGG 84497 .......... .......... .......... .......... .......... .......... 460 CAAAAAGCTT CTATATGAAA GAAAGGAGTC TTAGCAACTT CCTTTCTTTT CTCTATTAAA 84557 .......... .......... .......... .......... .......... .......... 460 AGCAAATGGG GATAAGAAAT GCTAGTTGAC GGTAAAATTG ATATACATTT ATTACGGTAA 84617 .......... .......... .......... .......... .......... .......... 460 AATGCAACTT TTGGTCCTTC CCATTTTTGA AAAAATATCT TAATTATACT CTTAATATTA 84677 .......... .......... .......... .......... .......... .......... 460 AGTGGCAACA CATAGAATCG TCATTTCTTA TTTAAAACAA CTAGATGAAA TATAATGTTC 84737 .......... .......... .......... .......... .......... .......... 460 ACTTGCAAAA AAAAAATTCC AGGCACCTGC CACTAAATAA AACGATCTCT ATACTAAAAA 84797 .......... .......... .......... .......... .......... .......... 460 AAAAGAAAAA AGAAAAAAGA CCATGTCAGC AACAATTCAA CTTCCTTATT CTCATTTATT 84857 .......... .......... .......... .......... .......... .......... 460 CAAATAATAA AAAACTTGCA ACATATGGCT ACATCAAAAC CTTTTATTGT GTTAATAAAT 84917 .......... .......... .......... .......... .......... .......... 460 CTAACACATA TGAAGGTGTT CAAATATAAA ATGAAATGAC TAATAACAAC CCACCATATA 84977 .......... .......... .......... .......... .......... .......... 460 GGTTCACTAC TTGCAAAAAA AAAATAAATA ATTCAGGCAC ATGCCACTAA ATAATACCAG 85037 .......... .......... .......... .......... .......... .......... 460 ATTCAATAAT GCACAAACAG ACACTTTAAA TATTCAATTT TTTAAATAAT GACAAAATAC 85097 .......... .......... .......... .......... .......... .......... 460 ATGTAGAAGA AAAAAAAATG TGTGACGACA ACAATTCATT GACAATTTAA ATAGTAAAAA 85157 .......... .......... .......... .......... .......... .......... 460 AAAACTTACA CCTTTTCACA AGGGTTAAAT ACATATAATC AAAAATTGAA TATTTAATGC 85217 .......... .......... .......... .......... .......... .......... 460 TAAGTTTATA TAACAAATAT TAATAAATCC AACAACCATA TAAAGATGAA ACTAGAGCAA 85277 .......... .......... .......... .......... .......... .......... 460 TTATGTTCAT TTTAACTTAA ACAGCATTCA CAATATAAAC TTAAAGGGCT TTGAGAGTTT 85337 || |||| .......... .......... .......... .......... .......... ..TAG-GTTT 467 TTGTTAGAGG AAAAATTTAT GGGTCACAAG CTTGAACCTC CCATTATTCC GAGTAAATTG 85397 || || ||| ||||| TTCTTTTAGG AAAAAA.... .......... .......... .......... .......... 483 GTTGAGGTTG TACTCTCATC TCCTTTGTGG ACAGGTCGAT TGCTCGAACC ATGTTAAATC 85457 .......... .......... .......... .......... .......... .......... 483 TTTGAGTCTT TTGATATATT TCCCGTTGTC TTTTTACTCG TGGTCTTTTG AGGTTTTGCT 85517 .......... .......... .......... .......... .......... .......... 483 TTGTTAGCTT TCGCATTTAC ACCTGCTTGT TTTCGGTCCT AACAAGTGGT AACAGAGCTA 85577 .......... .......... .......... .......... .......... .......... 483 GATTCAATGA CGGAGTTGGG TTTAGTGGTT CGATAATCGA TTATTGAATC AGGTTAGAAA 85637 .......... .......... .......... .......... .......... .......... 483 GAGGTGTTCA TCTTGGCGGG TGCAATTCTA GCCACAACCT TTTTTGATAG TAATGAAGAT 85697 .......... .......... .......... .......... .......... .......... 483 TTTGTTGAAG AATTGTTTCA GAGAGGTTCT CTGTGTTGAG ACATAAATTT TGCAAAGGAG 85757 .......... .......... .......... .......... .......... .......... 483 ATTATGGAGA GAAGAAGCAA GTTGTTAAAG ATTAAGTGAA GAAGGTAGAC AATTAGAAAT 85817 .......... .......... .......... .......... .......... .......... 483 TCAGGTCAAG GAAAAGATTT GTTGGAAATC CAGGTCCTGA TTTCTTACCA TTAATAGGTT 85877 ||| .......... .......... .......... .......... .......... .......GTT 486 TTGGATTGAC TAATCCTTCT TCTGGTAGGA AAAGGTTTAG AACTTTATAA ATAAAGGTAT 85937 ||| |||||| |||| ||| | |||||||||| ||| ||| TTGAATTGAC TAATTCTTTT TCTGGTAGGA AAATGTT... .......... .......... 523 GTTCCTTCTA ACTTAATCAG CATTCACAAT GTAATCTTAA AGGCTTTGAA AGTTTTGGTT 85997 .......... .......... .......... .......... .......... .......... 523 AGAGGGAGAA TTTATGAGTC ACATGCTTGA TAAGTTATTA CTTGTGGGAA CCTCCATGTA 86057 | || |||| .......... .......... .......... .......... .......... .C-CCGTGTA 531 TTCCGAGTCA ATTGATTGAG GTTGTTTCTC TCTATATTTT GTACTCTCAT ATTTATAGTG 86117 ||| ||| | |||| ||||| |||||||||| ||| |||||| |||||||||| ||| |||||| TTCTTAGTGA ATTGGTTGAG GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTAATAGTG 591 GATTGCTCAT CTCCTTTGTG GACTTAGATC GATTGACCGA ACTACGTTAA ATCTTTGTGT 86177 |||||||||| |||| ||||| ||| ||| || |||||||||| || ||||||| |||||||||| GATTGCTCAT CTCCATTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTGTGT 651 CTTTTGATAT ACTTCTCATT GTC-TTCTTA CTCGTGGTCT TTTGAGGTTT TGCTTTGCTA 86236 |||||| ||| | ||||| || ||| ||| || |||||||||| ||||||| || |||||||||| CTTTTGGTAT ATTTCTCGTT GTCTTTCATA CTCGTGGTCT TTTGAGG-TT TGCTTTGCTA 710 GCTTT-CGCA TTTACACCTG CTTGATTCCG GTCCTAACAA 86275 ||||| ||| ||||| |||| ||| ||||| || ||||||| GCTTTCCGCG TTTAC-CCTG CTTATTTCCG GTTCTAACAA 749 hqPGS_C09HBa0109D11.1+_SGN-E543331+ (85330 85353,85875 85914,86049 86275) ******************************************************************************** EST sequence 110 -strand 535 n (File: SGN-E243194-) 1 TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GGAGATTATG GAGAGGAGAA 61 GCAAGTTGTT GAAGATTAAG TGAAGAAGGT GGACAAGTTT ATTTGTCAGA AATTCAGGCC 121 AAGGGGGAGA CTTGTTGGGT TTTATTTGCC CTAAATTTCT TACCATAAAT AGGTTTTCCT 181 TGTAGGAAAA GGTTTTGGAT TGACTAATCC TTTTCTTGTA GGAAAAGGTT TTGGATTGAC 241 TAATCCTTTT CTTGTAGGAA AAGGTTTAGG ACTCCATAAA TAGAGGCATT TTTCTTCTAA 301 CTTAATCAGC ATTCAAAATG TAGTCTTAAG TGCTTTGAGA GTTTTGGTTA GAGGGAGAAT 361 TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCTGAGTGA 421 ATTGGTTGAG GTTGTTTCCC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 481 CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTATGT CTTTT Predicted gene structure (within gDNA segment 84369 to 87160): Exon 1 85436 85449 ( 14 n); cDNA 155 166 ( 12 n); score: 0.714 Intron 1 85450 85634 ( 185 n); Pd: 0.625 (s: 0), Pa: 0.000 (s: 0) Exon 2 85635 85652 ( 18 n); cDNA 167 182 ( 16 n); score: 0.778 Intron 2 85653 85824 ( 172 n); Pd: 0.773 (s: 0), Pa: 0.000 (s: 0.62) Exon 3 85825 86182 ( 358 n); cDNA 183 535 ( 353 n); score: 0.859 MATCH C09HBa0109D11.1+ SGN-E243194- 0.859 390 0.729 C PGS_C09HBa0109D11.1+_SGN-E243194- (85436 85449,85635 85652,85825 86182) Alignment (genomic DNA sequence = upper lines): ATTGCTCGAA CCATGTTAAA TCTTTGAGTC TTTTGATATA TTTCCCGTTG TCTTTTTACT 85495 ||| || | |||| ATTTCT--TA CCAT...... .......... .......... .......... .......... 166 CGTGGTCTTT TGAGGTTTTG CTTTGTTAGC TTTCGCATTT ACACCTGCTT GTTTTCGGTC 85555 .......... .......... .......... .......... .......... .......... 166 CTAACAAGTG GTAACAGAGC TAGATTCAAT GACGGAGTTG GGTTTAGTGG TTCGATAATC 85615 .......... .......... .......... .......... .......... .......... 166 GATTATTGAA TCAGGTTAGA AAGAGGTGTT CATCTTGGCG GGTGCAATTC TAGCCACAAC 85675 | || |||| || | |||| .......... .........A AATAGGTTTT C--CTTG... .......... .......... 182 CTTTTTTGAT AGTAATGAAG ATTTTGTTGA AGAATTGTTT CAGAGAGGTT CTCTGTGTTG 85735 .......... .......... .......... .......... .......... .......... 182 AGACATAAAT TTTGCAAAGG AGATTATGGA GAGAAGAAGC AAGTTGTTAA AGATTAAGTG 85795 .......... .......... .......... .......... .......... .......... 182 AAGAAGGTAG ACAATTAGAA ATTCAGGTCA AGGAAAAGAT TTGTTGGAAA TCCAGGTCCT 85855 |||||||| | || | ||| | |||| .......... .......... .........T AGGAAAAGGT TT-T-GGATT GACTAATCCT 211 GATTTCTTAC CATTAATAGG TTTTGGATTG ACTAATCCTT CTTCTGGTAG GAAAAGGTTT 85915 |||||| | || ||| |||||||||| |||||||||| |||| |||| |||||||||| --TTTCTT-G TAGGAAAAGG TTTTGGATTG ACTAATCCTT -TTCTTGTAG GAAAAGGTTT 267 AGAACTTTAT AAATAAAGGT ATGTTCCTTC TAACTTAATC AGCATTCACA ATGTAATCTT 85975 || ||| || ||||| ||| || || |||| |||||||||| |||||||| | ||||| |||| AGGACTCCAT AAATAGAGGC ATTTTTCTTC TAACTTAATC AGCATTCAAA ATGTAGTCTT 327 AAAGGCTTTG AAAGTTTTGG TTAGAGGGAG AATTTATGAG TCACATGCTT GATAAGTTAT 86035 || |||||| | |||||||| |||||||||| ||||| || | ||||| |||| |||| ||||| AAGTGCTTTG AGAGTTTTGG TTAGAGGGAG AATTTGTGGG TCACAAGCTT GATACGTTAT 387 TACTTGTGGG AACCT-CCAT GTATTCCGAG TCAATTGATT GAGGTTGTTT CTCTCTATAT 86094 ||||||| | ||||| |||| |||||| ||| | ||||| || |||||||||| | |||| ||| CACTTGTGTG AACCTCCCAT GTATTCTGAG TGAATTGGTT GAGGTTGTTT CCCTCTGTAT 447 TTTGTACTCT CATATTTATA GTGGATTGCT CATCTCCTTT GTGGACTTAG ATCGATTGAC 86154 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| TTTGTACTCT CATATTTATA GTGGATTGCT CATCTCCTTT GTGGACGTAG GTCGATTGAC 507 CGAACTACGT TAAATCTTTG TGTCTTTT 86182 ||||| |||| ||||||||| |||||||| CGAACCACGT TAAATCTTTA TGTCTTTT 535 hqPGS_C09HBa0109D11.1+_SGN-E243194- (85436 85449,85635 85652,85825 86182) ******************************************************************************** EST sequence 5 +strand 747 n (File: SGN-E211090+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC TGCTTATTTT CGGTCCTAAC ATATCTGAGT TTGCAGTTCT GTCCCTCCAC 541 CCCCTTCTTT TTGCAGGCAC AAATGGAATC AGTAAACTTA GCAGCAAATT CTTATTATGT 601 ACCAGAATCT GATTTTACGA GTTATTTGAA CTTTGGTGCT GCTGTCAGTG AGGTGGAGAT 661 TGATATCCTG ACCGGAGAGA CTACCATTTT GCAATCTGAT ATTATTTACG ACTGTGGGCA 721 GAGCTTGAAT CCAGCCGTTG ATATGGG Predicted gene structure (within gDNA segment 83526 to 89738): Exon 1 85635 85652 ( 18 n); cDNA 88 105 ( 18 n); score: 0.722 Intron 1 85653 85867 ( 215 n); Pd: 0.773 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 85868 86275 ( 408 n); cDNA 106 512 ( 407 n); score: 0.886 Intron 2 86276 88718 (2443 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 3 88719 88730 ( 12 n); cDNA 513 524 ( 12 n); score: 0.750 MATCH C09HBa0109D11.1+ SGN-E211090+ 0.886 438 0.586 C PGS_C09HBa0109D11.1+_SGN-E211090+ (85635 85652,85868 86275,88719 88730) Alignment (genomic DNA sequence = upper lines): AAAGAGGTGT TCATCTTGGC GGGTGCAATT CTAGCCACAA CCTTTTTTGA TAGTAATGAA 85694 ||| |||| | || | || AAATAGGTTT TCCTTTTA.. .......... .......... .......... .......... 105 GATTTTGTTG AAGAATTGTT TCAGAGAGGT TCTCTGTGTT GAGACATAAA TTTTGCAAAG 85754 .......... .......... .......... .......... .......... .......... 105 GAGATTATGG AGAGAAGAAG CAAGTTGTTA AAGATTAAGT GAAGAAGGTA GACAATTAGA 85814 .......... .......... .......... .......... .......... .......... 105 AATTCAGGTC AAGGAAAAGA TTTGTTGGAA ATCCAGGTCC TGATTTCTTA CCATTAATAG 85874 || || .......... .......... .......... .......... .......... ...GGAAAAG 112 GTTTTGGATT GACTAATCCT TCTTCTGGTA GGAAAAGGTT TAGAACTTTA TAAATAAAGG 85934 |||||| ||| |||||||||| | |||| ||| |||||||||| ||| ||| || |||||| | | GTTTTGAATT GACTAATCCT T-TTCTTGTA GGAAAAGGTT TAGGACTCTA TAAATAGATG 171 TATGTTCCTT CTAACTTAAT CAGCATTCAC AATGTAATCT TAAAGGCTTT GAAAGTTTTG 85994 || |||||| ||||||||| |||||||||| |||||| ||| || ||||||| || ||||||| AATATTCCTT TTAACTTAAT CAGCATTCAC AATGTAGTCT TACAGGCTTT GAGAGTTTTG 231 GTTAGAGGGA GAATTTATGA GTCACATGCT TGATAAGTTA TTACTTGTGG GAACCT-CCA 86053 |||||||||| |||| | || |||||| ||| ||||| |||| | ||||||| |||||| ||| GTTAGAGGGA GAATCTGTGG GTCACAAGCT TGATATGTTA TCACTTGTGT GAACCTCCCA 291 TGTATTCCGA GTCAATTGAT TGAGGTTGTT TCTCTCTATA TTTTGTACTC TCATATTTAT 86113 ||||||| || || ||||| | |||||||||| ||||||| || |||||||||| | |||||||| TGTATTCTGA GTGAATTGGT TGAGGTTGTT TCTCTCTGTA TTTTGTACTC TTATATTTAT 351 AGTGGATTGC TCATCTCCTT TGTGGACTTA GATCGATTGA CCGAACTACG TTAAATCTTT 86173 |||||||||| |||||||||| ||||||| || | | |||||| |||||| ||| |||||||||| AGTGGATTGC TCATCTCCTT TGTGGACGTA GGTTGATTGA CCGAACCACG TTAAATCTTT 411 GTGTCTTTTG ATATACTTCT CATTGTCTTC TTACTCGTGG TCTTTTGAGG TTTTGCTTTG 86233 |||||||||| ||||| |||| | |||||||| |||||||||| ||||| |||| |||| ||| GTGTCTTTTG ATATATTTCT CGTTGTCTTC TTACTCGTGG TCTTTCGAGG -TTTGTATTG 470 CTAGCTTTCG CATTTACACC TGCTTGATTC CGGTCCTAAC AAGTGGTATC AAAAGTCAGA 86293 ||||||| || | |||||||| ||||| || |||||||||| | CTAGCTTCCG CGTTTACACC TGCTTATTTT CGGTCCTAAC AT........ .......... 512 TTCAATGACG GAGTCAGATT CAGTGGTTCG ATAATCAATT ATTGAACCAG ATTAAAAAGA 86353 .......... .......... .......... .......... .......... .......... 512 AGTATTCATC TTGGCTGGTG CAGTTCTAGC CGCAACCTTA TTACTTCCTT GAAAGTGAAG 86413 .......... .......... .......... .......... .......... .......... 512 CTTGGGTCGA TTATTTCCCC GGCTTGGTGA GTCCTCAACT TTGAGGACAA GTGCATTTGT 86473 .......... .......... .......... .......... .......... .......... 512 TTCTAGTTTA TAGTTTCTTC TATACTCTAA ACTATGTTGT ATTTCCTATT TTTGGAGACT 86533 .......... .......... .......... .......... .......... .......... 512 TTTTGATGTA AAGGGCTTGA TCCCTACTTG TACTTCTTGT TGAAATGGTG ATAAGACAAA 86593 .......... .......... .......... .......... .......... .......... 512 GTCTAGTTCT TATTTTTTCT TATATGAAGA AGTTGACTTC TATTGTGAAA GTTATCAAAC 86653 .......... .......... .......... .......... .......... .......... 512 TTTTTTCGTC ATTTTCTTTG TCCTTATGAG ATGAAGCTTC AAGGGCTTGT AGATGCCATA 86713 .......... .......... .......... .......... .......... .......... 512 TTACTTTCTA GGGAATAACC ACGGGTCGTG ACAATCATTT TTTCCAAAAA TTTACATAGA 86773 .......... .......... .......... .......... .......... .......... 512 CGTTTGTTAA GACTTTAACA TAGAGTCAGT TGGTCACCAT TGCTAAAACG ATCATTTCGC 86833 .......... .......... .......... .......... .......... .......... 512 AAGGTCAAAC GAGTCTAGAG CAGGTCCCCC TAGTTAATTC TAACGTCATT TTTACCAAAT 86893 .......... .......... .......... .......... .......... .......... 512 TTTTTATGGG CTAGTTGATC TTGATGGCCA AAACGATTCA TTTTCAAGGT CAAACAAGTC 86953 .......... .......... .......... .......... .......... .......... 512 TTAAAGTATT TTATCGATTT TCGTGTGCTA TATAGTCCAC CATCTTTTTT GGTGATCCCA 87013 .......... .......... .......... .......... .......... .......... 512 AATTCGATGT CATATTTGCC AAAAAAATTC ATCGACGTCC GTTAAGACCT TAGTTGTGGA 87073 .......... .......... .......... .......... .......... .......... 512 GCCAATTGGC CTTGATGGCT AAAACGACCC ATTTCAAGGT CTAACAAGCT CAAAGCAAGT 87133 .......... .......... .......... .......... .......... .......... 512 AAAACCTCTA TTCTGGTAAT TTTTGTGTTT TATATAGTCC ACCATCTTTT TTAGTGATTT 87193 .......... .......... .......... .......... .......... .......... 512 AGAATATTGA CGTCATTTTT GCCAATATTT TTCATGGACG TCCGTTAAAA CTTTAGTTGT 87253 .......... .......... .......... .......... .......... .......... 512 GGATCCAGTT GACCCTGATG GCCAAAACAA TCCATTTTCA AAGTCAAACG AGCTCAGAGT 87313 .......... .......... .......... .......... .......... .......... 512 AGGTAAACTC CCATTTTACC TATTTTCGTG TGTTATAGTT CACCATTTTT TTGTGATCCA 87373 .......... .......... .......... .......... .......... .......... 512 AATTCCACGT CATATTTTAT GAAATTTTTC ATGGACGTCC ATTAAAACTT TAGTTATGGA 87433 .......... .......... .......... .......... .......... .......... 512 GCCCGTTGAC CCCGACGGTC AAAACGATCC ATTTTCATGG TAAAACGAGT CATACATCAA 87493 .......... .......... .......... .......... .......... .......... 512 GTATACCCCC ATTTTGTCGA TTTTCATGTG CTATAGTCCA TGAATTTGGT GATCCAGAAT 87553 .......... .......... .......... .......... .......... .......... 512 TTCGACGTCA TTTTTTTCAA AATTTTACAT GGACGTCCGT TAAGACCTTA ATCATGGAGT 87613 .......... .......... .......... .......... .......... .......... 512 CAGTTGGTCC CCAAGACCAA AAGGACTTAT TCACAAGGTT AAACAAGTCA CGGAGCAGGT 87673 .......... .......... .......... .......... .......... .......... 512 AAACCCCCAA ATTTCGAAGT CTTTTTTTTT CAAAAATTTA CATGGACCTC CATTAAGACC 87733 .......... .......... .......... .......... .......... .......... 512 TCAGACATGG AGCCAGTTGG TCACCACGAC CAAAACGACT CATTTTCAAG GTCAAACGAG 87793 .......... .......... .......... .......... .......... .......... 512 CCCAGAGCAG ATAAACCCCT TATTTTATCG ATTTTCATGT GCATAGTCCA TGAATTTTGG 87853 .......... .......... .......... .......... .......... .......... 512 TGATTTGAAA TTTCGACGTC ATTTTTGTCA AAAATTACAT AGATATCCTT CGAAACAACC 87913 .......... .......... .......... .......... .......... .......... 512 AATTTTCAAG ATCAAATAAA CCCTAGAGCA AGTAAACCTC GAATTTTACT AATTTTCATG 87973 .......... .......... .......... .......... .......... .......... 512 TGTTATAACA CATAAAATCT ATCGTCTTTT ATTTTAAAAT AAAACAACTA TAATGATGAC 88033 .......... .......... .......... .......... .......... .......... 512 AAATTATCCA TTAGTTCACT TATTTTAATG TAATATAGTT GCACCACTTA CAAATTTCAG 88093 .......... .......... .......... .......... .......... .......... 512 GGACATGCCA CTGAATAAAA CAATCACTCA ATACTAAAAA AAAAAAGAAA GTGTTACAGC 88153 .......... .......... .......... .......... .......... .......... 512 AACAATTCAA ACTTCTCATT TCTCATTAAT TCAAATAAGA AAAAACTTAC AACATAGTTA 88213 .......... .......... .......... .......... .......... .......... 512 CATGGCTAAA TCAAAACCTT TAACTTACAT AACTCCCTCT CTTATTGGAT ATAAATGAAT 88273 .......... .......... .......... .......... .......... .......... 512 AAGAAAAAAA ATAATAAACA TAATCAAAAA TTGGAAATGC TAAATCTATA TAAATAAGGG 88333 .......... .......... .......... .......... .......... .......... 512 TCATAATAAA TCCAACAACT ACCAGAACTA TAATTAGCCA CCATACATCT TTGTTCAAAA 88393 .......... .......... .......... .......... .......... .......... 512 AAATATTTTC AAGATTTAGA GTTTGCACAC ATGCCAAAAC TGAAAATGTT GTGGCATAAA 88453 .......... .......... .......... .......... .......... .......... 512 ATACTGAAAC CATAGCAATT ATGACCCTTA TAGGCAAAGA AATATAAAAA TCATCACTAT 88513 .......... .......... .......... .......... .......... .......... 512 GAAATTTGCA AAGAATAAAT GATAACAACG TACCAATTGT GACTAGTGAA CTTATAAGTG 88573 .......... .......... .......... .......... .......... .......... 512 CTGCACCTAA GTAAAATATC AACATCCATA TTTCATCTTT CAATTTTTGG AGGAAGATTG 88633 .......... .......... .......... .......... .......... .......... 512 GCAGGCCAGT TGTCTGATCA AATCCTCCAG GGACTGTAAA AATAGCAGCG AAATTGACTG 88693 .......... .......... .......... .......... .......... .......... 512 TGCAGAGGAG AGTAGCAAGT ACTAGAGCTG AATTCGC 88730 | ||| | || || .......... .......... .....ATCTG AGTTTGC 524 hqPGS_C09HBa0109D11.1+_SGN-E211090+ (85635 85652,85868 86275) ******************************************************************************** EST sequence 26 +strand 490 n (File: SGN-E205772+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTACTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGA TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC Predicted gene structure (within gDNA segment 83526 to 87168): Exon 1 85635 85652 ( 18 n); cDNA 88 105 ( 18 n); score: 0.722 Intron 1 85653 85867 ( 215 n); Pd: 0.773 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 85868 86253 ( 386 n); cDNA 106 490 ( 385 n); score: 0.887 MATCH C09HBa0109D11.1+ SGN-E205772+ 0.887 404 0.824 C PGS_C09HBa0109D11.1+_SGN-E205772+ (85635 85652,85868 86253) Alignment (genomic DNA sequence = upper lines): AAAGAGGTGT TCATCTTGGC GGGTGCAATT CTAGCCACAA CCTTTTTTGA TAGTAATGAA 85694 ||| |||| | || | || AAATAGGTTT TCCTTTTA.. .......... .......... .......... .......... 105 GATTTTGTTG AAGAATTGTT TCAGAGAGGT TCTCTGTGTT GAGACATAAA TTTTGCAAAG 85754 .......... .......... .......... .......... .......... .......... 105 GAGATTATGG AGAGAAGAAG CAAGTTGTTA AAGATTAAGT GAAGAAGGTA GACAATTAGA 85814 .......... .......... .......... .......... .......... .......... 105 AATTCAGGTC AAGGAAAAGA TTTGTTGGAA ATCCAGGTCC TGATTTCTTA CCATTAATAG 85874 || || .......... .......... .......... .......... .......... ...GGAAAAG 112 GTTTTGGATT GACTAATCCT TCTTCTGGTA GGAAAAGGTT TAGAACTTTA TAAATAAAGG 85934 |||||| ||| |||||||||| | |||| ||| |||||||||| ||| ||| || |||||| | | GTTTTGAATT GACTAATCCT T-TTCTTGTA GGAAAAGGTT TAGGACTCTA TAAATAGATG 171 TATGTTCCTT CTAACTTAAT CAGCATTCAC AATGTAATCT TAAAGGCTTT GAAAGTTTTG 85994 || |||||| ||||||||| |||||||||| |||||| ||| || ||||||| || ||||||| AATATTCCTT TTAACTTAAT CAGCATTCAC AATGTACTCT TACAGGCTTT GAGAGTTTTG 231 GTTAGAGGGA GAATTTATGA GTCACATGCT TGATAAGTTA TTACTTGTGG GAACCT-CCA 86053 |||||||||| |||| | || |||||| ||| ||||| |||| | ||||||| |||||| ||| GTTAGAGGGA GAATCTGTGG GTCACAAGCT TGATATGTTA TCACTTGTGT GAACCTCCCA 291 TGTATTCCGA GTCAATTGAT TGAGGTTGTT TCTCTCTATA TTTTGTACTC TCATATTTAT 86113 ||||||| || || ||||| | |||||||| | ||||||| || |||||||||| | |||||||| TGTATTCTGA GTGAATTGGT TGAGGTTGAT TCTCTCTGTA TTTTGTACTC TTATATTTAT 351 AGTGGATTGC TCATCTCCTT TGTGGACTTA GATCGATTGA CCGAACTACG TTAAATCTTT 86173 |||||||||| |||||||||| ||||||| || | | |||||| |||||| ||| |||||||||| AGTGGATTGC TCATCTCCTT TGTGGACGTA GGTTGATTGA CCGAACCACG TTAAATCTTT 411 GTGTCTTTTG ATATACTTCT CATTGTCTTC TTACTCGTGG TCTTTTGAGG TTTTGCTTTG 86233 |||||||||| ||||| |||| | |||||||| |||||||||| ||||| |||| |||| ||| GTGTCTTTTG ATATATTTCT CGTTGTCTTC TTACTCGTGG TCTTTCGAGG -TTTGTATTG 470 CTAGCTTTCG CATTTACACC 86253 ||||||| || | |||||||| CTAGCTTCCG CGTTTACACC 490 hqPGS_C09HBa0109D11.1+_SGN-E205772+ (85635 85652,85868 86253) ******************************************************************************** EST sequence 27 +strand 456 n (File: SGN-E205773+) 1 AACAATTAGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTACC ATGTATTCTG 301 AGTGAATTGG TTGAAGCTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTACT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGATGGCTT CTTACTCGTG GTCTTT Predicted gene structure (within gDNA segment 83526 to 86828): Exon 1 85635 85652 ( 18 n); cDNA 88 105 ( 18 n); score: 0.722 Intron 1 85653 85867 ( 215 n); Pd: 0.773 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 85868 86218 ( 351 n); cDNA 106 456 ( 351 n); score: 0.882 MATCH C09HBa0109D11.1+ SGN-E205773+ 0.882 369 0.809 C PGS_C09HBa0109D11.1+_SGN-E205773+ (85635 85652,85868 86218) Alignment (genomic DNA sequence = upper lines): AAAGAGGTGT TCATCTTGGC GGGTGCAATT CTAGCCACAA CCTTTTTTGA TAGTAATGAA 85694 ||| |||| | || | || AAATAGGTTT TCCTTTTA.. .......... .......... .......... .......... 105 GATTTTGTTG AAGAATTGTT TCAGAGAGGT TCTCTGTGTT GAGACATAAA TTTTGCAAAG 85754 .......... .......... .......... .......... .......... .......... 105 GAGATTATGG AGAGAAGAAG CAAGTTGTTA AAGATTAAGT GAAGAAGGTA GACAATTAGA 85814 .......... .......... .......... .......... .......... .......... 105 AATTCAGGTC AAGGAAAAGA TTTGTTGGAA ATCCAGGTCC TGATTTCTTA CCATTAATAG 85874 || || .......... .......... .......... .......... .......... ...GGAAAAG 112 GTTTTGGATT GACTAATCCT TCTTCTGGTA GGAAAAGGTT TAGAACTTTA TAAATAAAGG 85934 |||||| ||| |||||||||| | |||| ||| |||||||||| ||| ||| || |||||| | | GTTTTGAATT GACTAATCCT T-TTCTTGTA GGAAAAGGTT TAGGACTCTA TAAATAGATG 171 TATGTTCCTT CTAACTTAAT CAGCATTCAC AATGTAATCT TAAAGGCTTT GAAAGTTTTG 85994 || |||||| ||||||||| |||||||||| |||||| ||| || ||||||| || ||||||| AATATTCCTT TTAACTTAAT CAGCATTCAC AATGTAGTCT TACAGGCTTT GAGAGTTTTG 231 GTTAGAGGGA GAATTTATGA GTCACATGCT TGATAAGTTA TTACTTGTGG GAACCT-CCA 86053 |||||||||| |||| | || |||||| ||| ||||| |||| | ||||||| |||||| ||| GTTAGAGGGA GAATCTGTGG GTCACAAGCT TGATATGTTA TCACTTGTGT GAACCTACCA 291 TGTATTCCGA GTCAATTGAT TGAGGTTGTT TCTCTCTATA TTTTGTACTC TCATATTTAT 86113 ||||||| || || ||||| | ||| | |||| ||||||| || |||||||||| | |||||||| TGTATTCTGA GTGAATTGGT TGAAGCTGTT TCTCTCTGTA TTTTGTACTC TTATATTTAT 351 AGTGGATTGC TCATCTCCTT TGTGGACTTA GATCGATTGA CCGAACTACG TTAAATCTTT 86173 |||||||||| |||||| ||| ||||||| || | | |||||| |||||| ||| |||||||||| AGTGGATTGC TCATCTACTT TGTGGACGTA GGTTGATTGA CCGAACCACG TTAAATCTTT 411 GTGTCTTTTG ATATACTTCT CATTGTCTTC TTACTCGTGG TCTTT 86218 |||||||||| ||||| |||| | || |||| |||||||||| ||||| GTGTCTTTTG ATATATTTCT CGATGGCTTC TTACTCGTGG TCTTT 456 hqPGS_C09HBa0109D11.1+_SGN-E205773+ (85635 85652,85868 86218) ******************************************************************************** EST sequence 96 -strand 595 n (File: SGN-E271645-) 1 CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 61 ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 181 TGCTAGCTTC CGCATTTACA CCTGCTTATT TCGATCCTAA CAAGTGGGTA TTAGAGCCAT 241 TTAATGACAG AGGTCAGGTT CAGTGGTTCG ATAATCGATT ATTGGACCAG GTTAGAAAGA 301 GGGTGGTGGT TCATCTTGAC AGGTGGTAGG TTCTAGCCGC AATCTTTTTG ACAGTAATGA 361 AGATTTTGTT GGAGAAATTG TTTCAGAGAG GTTTTCTATG GTTGAGACAT AAATTTTACA 421 AAGGAGATTA AGAAGAAGAG AAGCAAGTTG TTGAAGATTA AATGAAGAAT GTGGAGAAAT 481 TTATTTTGGT CAGAAATACA GGCCAAGGGG GAGGAGATTT GTTGGATTTT ATTTACCATA 541 ATTTCTTAAC ATAAATAGGT TTTCCTTTTA GGGAAAAATT TTGGATTGAC TAATC Predicted gene structure (within gDNA segment 84446 to 90738): Exon 1 85432 85811 ( 380 n); cDNA 94 480 ( 387 n); score: 0.792 Intron 1 85812 87871 (2060 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 87872 87887 ( 16 n); cDNA 481 496 ( 16 n); score: 0.812 MATCH C09HBa0109D11.1+ SGN-E271645- 0.792 396 0.666 C PGS_C09HBa0109D11.1+_SGN-E271645- (85432 85811,87872 87887) Alignment (genomic DNA sequence = upper lines): GTCGATTGCT CGAACCATGT TAAATCTTT- GAGTCTTTTG ATATATTTCC CGTTGTCTTT 85490 |||||||| ||||||| || ||||||||| | |||||||| |||||||| ||||||||| GTCGATTGAC CGAACCACGT TAAATCTTTG GTGTCTTTTG GTATATTTCT CGTTGTCTTC 153 TTACTCGTGG TCTTTTGAGG TTTTGCTTTG TTAGCTTTCG CATTTACACC TGCTTGTTTT 85550 |||||||||| ||||| || | ||||||||| |||||| || |||||||||| ||||| ||| TTACTCGTGG TCTTTCGAAG -TTTGCTTTG CTAGCTTCCG CATTTACACC TGCTT-ATTT 211 CGGTCCTAAC AAGT-GGTAA CAGAGCTAGA TTCAATGACG GA-GTTGGGT TTAGTGGTTC 85608 || ||||||| |||| |||| ||||| | || |||||| || || ||| | |||||||| CGATCCTAAC AAGTGGGTAT TAGAGC--CA TTTAATGACA GAGGTCAGGT TCAGTGGTTC 269 GATAATCGAT TATTGAATCA GGTTAGAAAG A----GGT-G TTCATCTTGG CGGGT-GCA- 85661 |||||||||| ||||| | || |||||||||| | ||| | ||||||||| | ||| | | GATAATCGAT TATTGGACCA GGTTAGAAAG AGGGTGGTGG TTCATCTTGA CAGGTGGTAG 329 ATTCTAGCCA CAACCTTTTT TGATAGTAAT GAAGATTTTG TTGAAG-AAT TGTTTCAGAG 85720 |||||||| ||| | |||| ||| |||||| |||||||||| ||| || ||| |||||||||| GTTCTAGCCG CAATC-TTTT TGACAGTAAT GAAGATTTTG TTGGAGAAAT TGTTTCAGAG 388 AGGTTCTCTG T-GTTGAGAC ATAAATTTTG CAAAGGAGAT TATGGAGAGA AGAAGCAAGT 85779 ||||| ||| | |||||||| ||||||||| |||||||||| || | ||| |||||||||| AGGTTTTCTA TGGTTGAGAC ATAAATTTTA CAAAGGAGAT TAAGAAGAAG AGAAGCAAGT 448 TGTTAAAGAT TAAGTGAAGA AGGTAGACAA TTAGAAATTC AGGTCAAGGA AAAGATTTGT 85839 |||| ||||| ||| |||||| | || || || | TGTTGAAGAT TAAATGAAGA ATGTGGAGAA AT........ .......... .......... 480 TGGAAATCCA GGTCCTGATT TCTTACCATT AATAGGTTTT GGATTGACTA ATCCTTCTTC 85899 .......... .......... .......... .......... .......... .......... 480 TGGTAGGAAA AGGTTTAGAA CTTTATAAAT AAAGGTATGT TCCTTCTAAC TTAATCAGCA 85959 .......... .......... .......... .......... .......... .......... 480 TTCACAATGT AATCTTAAAG GCTTTGAAAG TTTTGGTTAG AGGGAGAATT TATGAGTCAC 86019 .......... .......... .......... .......... .......... .......... 480 ATGCTTGATA AGTTATTACT TGTGGGAACC TCCATGTATT CCGAGTCAAT TGATTGAGGT 86079 .......... .......... .......... .......... .......... .......... 480 TGTTTCTCTC TATATTTTGT ACTCTCATAT TTATAGTGGA TTGCTCATCT CCTTTGTGGA 86139 .......... .......... .......... .......... .......... .......... 480 CTTAGATCGA TTGACCGAAC TACGTTAAAT CTTTGTGTCT TTTGATATAC TTCTCATTGT 86199 .......... .......... .......... .......... .......... .......... 480 CTTCTTACTC GTGGTCTTTT GAGGTTTTGC TTTGCTAGCT TTCGCATTTA CACCTGCTTG 86259 .......... .......... .......... .......... .......... .......... 480 ATTCCGGTCC TAACAAGTGG TATCAAAAGT CAGATTCAAT GACGGAGTCA GATTCAGTGG 86319 .......... .......... .......... .......... .......... .......... 480 TTCGATAATC AATTATTGAA CCAGATTAAA AAGAAGTATT CATCTTGGCT GGTGCAGTTC 86379 .......... .......... .......... .......... .......... .......... 480 TAGCCGCAAC CTTATTACTT CCTTGAAAGT GAAGCTTGGG TCGATTATTT CCCCGGCTTG 86439 .......... .......... .......... .......... .......... .......... 480 GTGAGTCCTC AACTTTGAGG ACAAGTGCAT TTGTTTCTAG TTTATAGTTT CTTCTATACT 86499 .......... .......... .......... .......... .......... .......... 480 CTAAACTATG TTGTATTTCC TATTTTTGGA GACTTTTTGA TGTAAAGGGC TTGATCCCTA 86559 .......... .......... .......... .......... .......... .......... 480 CTTGTACTTC TTGTTGAAAT GGTGATAAGA CAAAGTCTAG TTCTTATTTT TTCTTATATG 86619 .......... .......... .......... .......... .......... .......... 480 AAGAAGTTGA CTTCTATTGT GAAAGTTATC AAACTTTTTT CGTCATTTTC TTTGTCCTTA 86679 .......... .......... .......... .......... .......... .......... 480 TGAGATGAAG CTTCAAGGGC TTGTAGATGC CATATTACTT TCTAGGGAAT AACCACGGGT 86739 .......... .......... .......... .......... .......... .......... 480 CGTGACAATC ATTTTTTCCA AAAATTTACA TAGACGTTTG TTAAGACTTT AACATAGAGT 86799 .......... .......... .......... .......... .......... .......... 480 CAGTTGGTCA CCATTGCTAA AACGATCATT TCGCAAGGTC AAACGAGTCT AGAGCAGGTC 86859 .......... .......... .......... .......... .......... .......... 480 CCCCTAGTTA ATTCTAACGT CATTTTTACC AAATTTTTTA TGGGCTAGTT GATCTTGATG 86919 .......... .......... .......... .......... .......... .......... 480 GCCAAAACGA TTCATTTTCA AGGTCAAACA AGTCTTAAAG TATTTTATCG ATTTTCGTGT 86979 .......... .......... .......... .......... .......... .......... 480 GCTATATAGT CCACCATCTT TTTTGGTGAT CCCAAATTCG ATGTCATATT TGCCAAAAAA 87039 .......... .......... .......... .......... .......... .......... 480 ATTCATCGAC GTCCGTTAAG ACCTTAGTTG TGGAGCCAAT TGGCCTTGAT GGCTAAAACG 87099 .......... .......... .......... .......... .......... .......... 480 ACCCATTTCA AGGTCTAACA AGCTCAAAGC AAGTAAAACC TCTATTCTGG TAATTTTTGT 87159 .......... .......... .......... .......... .......... .......... 480 GTTTTATATA GTCCACCATC TTTTTTAGTG ATTTAGAATA TTGACGTCAT TTTTGCCAAT 87219 .......... .......... .......... .......... .......... .......... 480 ATTTTTCATG GACGTCCGTT AAAACTTTAG TTGTGGATCC AGTTGACCCT GATGGCCAAA 87279 .......... .......... .......... .......... .......... .......... 480 ACAATCCATT TTCAAAGTCA AACGAGCTCA GAGTAGGTAA ACTCCCATTT TACCTATTTT 87339 .......... .......... .......... .......... .......... .......... 480 CGTGTGTTAT AGTTCACCAT TTTTTTGTGA TCCAAATTCC ACGTCATATT TTATGAAATT 87399 .......... .......... .......... .......... .......... .......... 480 TTTCATGGAC GTCCATTAAA ACTTTAGTTA TGGAGCCCGT TGACCCCGAC GGTCAAAACG 87459 .......... .......... .......... .......... .......... .......... 480 ATCCATTTTC ATGGTAAAAC GAGTCATACA TCAAGTATAC CCCCATTTTG TCGATTTTCA 87519 .......... .......... .......... .......... .......... .......... 480 TGTGCTATAG TCCATGAATT TGGTGATCCA GAATTTCGAC GTCATTTTTT TCAAAATTTT 87579 .......... .......... .......... .......... .......... .......... 480 ACATGGACGT CCGTTAAGAC CTTAATCATG GAGTCAGTTG GTCCCCAAGA CCAAAAGGAC 87639 .......... .......... .......... .......... .......... .......... 480 TTATTCACAA GGTTAAACAA GTCACGGAGC AGGTAAACCC CCAAATTTCG AAGTCTTTTT 87699 .......... .......... .......... .......... .......... .......... 480 TTTTCAAAAA TTTACATGGA CCTCCATTAA GACCTCAGAC ATGGAGCCAG TTGGTCACCA 87759 .......... .......... .......... .......... .......... .......... 480 CGACCAAAAC GACTCATTTT CAAGGTCAAA CGAGCCCAGA GCAGATAAAC CCCTTATTTT 87819 .......... .......... .......... .......... .......... .......... 480 ATCGATTTTC ATGTGCATAG TCCATGAATT TTGGTGATTT GAAATTTCGA CGTCATTTTT 87879 | ||||| .......... .......... .......... .......... .......... ..TTATTTTG 488 GTCAAAAA 87887 |||| ||| GTCAGAAA 496 hqPGS_C09HBa0109D11.1+_SGN-E271645- (85432 85811) ******************************************************************************** EST sequence 108 -strand 574 n (File: SGN-E206285-) 1 AAACATATAG GGCCAAGCAA GTTCACGTAT CATAGATGTT TGTTGGGTTT TATTTGCTCT 61 AAATTTCTTA CCATAAATAG ATTTTCCTTG TAGGAAAAGG TTTTGGATTG ACTAATCCTT 121 TTCTTGTAGG GAAAGGTTTA GGATTCTATA AATAGAGGCA TGTTCCTTTT AACTTAGTTA 181 ACATTCACAA TGTAGTCTTA AGGGCTTTGA GAGTTTTGGT TAGAGGGAGA ATTTGTGGGT 241 CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT GAATTGGTTG 301 AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC ATCTCCTTTG 361 TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT ATATTTCTCG 421 TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT TTACACCTGC 481 TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA AGCCCTTGCT 541 TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 82721 to 88128): Exon 1 85870 86261 ( 392 n); cDNA 95 484 ( 390 n); score: 0.889 Intron 1 86262 87249 ( 988 n); Pd: 0.000 (s: 0.84), Pa: 0.972 (s: 0) Exon 2 87250 87260 ( 11 n); cDNA 485 495 ( 11 n); score: 0.727 MATCH C09HBa0109D11.1+ SGN-E206285- 0.889 403 0.702 C PGS_C09HBa0109D11.1+_SGN-E206285- (85870 86261,87250 87260) Alignment (genomic DNA sequence = upper lines): AATAGGTTTT GGATTGACTA ATCCTTCTTC TGGTAGGAAA AGGTTTAGAA CTTTATAAAT 85929 || ||||||| |||||||||| |||||| ||| | ||||| || |||||||| | | ||||||| AAAAGGTTTT GGATTGACTA ATCCTT-TTC TTGTAGGGAA AGGTTTAGGA TTCTATAAAT 153 AAAGGTATGT TCCTTCTAAC TTAATCAGCA TTCACAATGT AATCTTAAAG GCTTTGAAAG 85989 | ||| |||| ||||| |||| ||| | | || |||||||||| | |||||| | ||||||| || AGAGGCATGT TCCTTTTAAC TTAGTTAACA TTCACAATGT AGTCTTAAGG GCTTTGAGAG 213 TTTTGGTTAG AGGGAGAATT TATGAGTCAC ATGCTTGATA AGTTATTACT TGTGGGAACC 86049 |||||||||| |||||||||| | || ||||| | |||||||| ||||||||| |||| ||||| TTTTGGTTAG AGGGAGAATT TGTGGGTCAC AAGCTTGATA CGTTATTACT TGTGTGAACC 273 T-CCATGTAT TCCGAGTCAA TTGATTGAGG TTGTTTCTCT CTATATTTTG TACTCTCATA 86108 | |||||||| || |||| || ||| ||||| ||||||| || || ||||||| |||||||||| TCCCATGTAT TCTGAGTGAA TTGGTTGAGA TTGTTTCCCT CTGTATTTTG TACTCTCATA 333 TTTATAGTGG ATTGCTCATC TCCTTTGTGG ACTTAGATCG ATTGACCGAA CTACGTTAAA 86168 |||||||||| |||||||||| |||||||||| || ||| ||| |||||||||| | |||||||| TTTATAGTGG ATTGCTCATC TCCTTTGTGG ACATAGGTCG ATTGACCGAA CCACGTTAAA 393 TCTTTGTGTC TTTTGATATA CTTCTCATTG TCTTCTTACT CGTGGTCTTT TGAGGTTTTG 86228 |||||||||| ||||| |||| ||||| ||| |||||||||| |||||||||| || | || | TCTTTGTGTC TTTTGGTATA TTTCTCGTTG TCTTCTTACT CGTGGTCTTT CGATG-TTAG 452 CTTTGCTAGC TTTCGCATTT ACACCTGCTT GATTCCGGTC CTAACAAGTG GTATCAAAAG 86288 | |||||||| || ||| ||| |||||||||| || CATTGCTAGC TTCCGCGTTT ACACCTGCTT -AT....... .......... .......... 484 TCAGATTCAA TGACGGAGTC AGATTCAGTG GTTCGATAAT CAATTATTGA ACCAGATTAA 86348 .......... .......... .......... .......... .......... .......... 484 AAAGAAGTAT TCATCTTGGC TGGTGCAGTT CTAGCCGCAA CCTTATTACT TCCTTGAAAG 86408 .......... .......... .......... .......... .......... .......... 484 TGAAGCTTGG GTCGATTATT TCCCCGGCTT GGTGAGTCCT CAACTTTGAG GACAAGTGCA 86468 .......... .......... .......... .......... .......... .......... 484 TTTGTTTCTA GTTTATAGTT TCTTCTATAC TCTAAACTAT GTTGTATTTC CTATTTTTGG 86528 .......... .......... .......... .......... .......... .......... 484 AGACTTTTTG ATGTAAAGGG CTTGATCCCT ACTTGTACTT CTTGTTGAAA TGGTGATAAG 86588 .......... .......... .......... .......... .......... .......... 484 ACAAAGTCTA GTTCTTATTT TTTCTTATAT GAAGAAGTTG ACTTCTATTG TGAAAGTTAT 86648 .......... .......... .......... .......... .......... .......... 484 CAAACTTTTT TCGTCATTTT CTTTGTCCTT ATGAGATGAA GCTTCAAGGG CTTGTAGATG 86708 .......... .......... .......... .......... .......... .......... 484 CCATATTACT TTCTAGGGAA TAACCACGGG TCGTGACAAT CATTTTTTCC AAAAATTTAC 86768 .......... .......... .......... .......... .......... .......... 484 ATAGACGTTT GTTAAGACTT TAACATAGAG TCAGTTGGTC ACCATTGCTA AAACGATCAT 86828 .......... .......... .......... .......... .......... .......... 484 TTCGCAAGGT CAAACGAGTC TAGAGCAGGT CCCCCTAGTT AATTCTAACG TCATTTTTAC 86888 .......... .......... .......... .......... .......... .......... 484 CAAATTTTTT ATGGGCTAGT TGATCTTGAT GGCCAAAACG ATTCATTTTC AAGGTCAAAC 86948 .......... .......... .......... .......... .......... .......... 484 AAGTCTTAAA GTATTTTATC GATTTTCGTG TGCTATATAG TCCACCATCT TTTTTGGTGA 87008 .......... .......... .......... .......... .......... .......... 484 TCCCAAATTC GATGTCATAT TTGCCAAAAA AATTCATCGA CGTCCGTTAA GACCTTAGTT 87068 .......... .......... .......... .......... .......... .......... 484 GTGGAGCCAA TTGGCCTTGA TGGCTAAAAC GACCCATTTC AAGGTCTAAC AAGCTCAAAG 87128 .......... .......... .......... .......... .......... .......... 484 CAAGTAAAAC CTCTATTCTG GTAATTTTTG TGTTTTATAT AGTCCACCAT CTTTTTTAGT 87188 .......... .......... .......... .......... .......... .......... 484 GATTTAGAAT ATTGACGTCA TTTTTGCCAA TATTTTTCAT GGACGTCCGT TAAAACTTTA 87248 .......... .......... .......... .......... .......... .......... 484 GTTGTGGATC CA 87260 || | | || || .TTTTCGGTC CA 495 hqPGS_C09HBa0109D11.1+_SGN-E206285- (85870 86261) ******************************************************************************** EST sequence 109 -strand 344 n (File: SGN-E206496-) 1 ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 61 GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 121 ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 181 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 241 TTACACCTGC TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA 301 AGCCATTGCT TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 84622 to 88128): Exon 1 86007 86261 ( 255 n); cDNA 1 254 ( 254 n); score: 0.892 Intron 1 86262 87249 ( 988 n); Pd: 0.000 (s: 0.84), Pa: 0.972 (s: 0) Exon 2 87250 87260 ( 11 n); cDNA 255 265 ( 11 n); score: 0.727 MATCH C09HBa0109D11.1+ SGN-E206496- 0.892 266 0.773 C PGS_C09HBa0109D11.1+_SGN-E206496- (86007 86261,87250 87260) Alignment (genomic DNA sequence = upper lines): ATTTATGAGT CACATGCTTG ATAAGTTATT ACTTGTGGGA ACCT-CCATG TATTCCGAGT 86065 |||| || || |||| ||||| ||| |||||| ||||||| || |||| ||||| ||||| |||| ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 60 CAATTGATTG AGGTTGTTTC TCTCTATATT TTGTACTCTC ATATTTATAG TGGATTGCTC 86125 ||||| ||| || ||||||| |||| |||| |||||||||| |||||||||| |||||||||| GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 120 ATCTCCTTTG TGGACTTAGA TCGATTGACC GAACTACGTT AAATCTTTGT GTCTTTTGAT 86185 |||||||||| ||||| ||| |||||||||| |||| ||||| |||||||||| |||||||| | ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 180 ATACTTCTCA TTGTCTTCTT ACTCGTGGTC TTTTGAGGTT TTGCTTTGCT AGCTTTCGCA 86245 ||| ||||| |||||||||| |||||||||| ||| || | | | || ||||| ||||| ||| ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATG-T TAGCATTGCT AGCTTCCGCG 239 TTTACACCTG CTTGATTCCG GTCCTAACAA GTGGTATCAA AAGTCAGATT CAATGACGGA 86305 |||||||||| ||| || TTTACACCTG CTT-AT.... .......... .......... .......... .......... 254 GTCAGATTCA GTGGTTCGAT AATCAATTAT TGAACCAGAT TAAAAAGAAG TATTCATCTT 86365 .......... .......... .......... .......... .......... .......... 254 GGCTGGTGCA GTTCTAGCCG CAACCTTATT ACTTCCTTGA AAGTGAAGCT TGGGTCGATT 86425 .......... .......... .......... .......... .......... .......... 254 ATTTCCCCGG CTTGGTGAGT CCTCAACTTT GAGGACAAGT GCATTTGTTT CTAGTTTATA 86485 .......... .......... .......... .......... .......... .......... 254 GTTTCTTCTA TACTCTAAAC TATGTTGTAT TTCCTATTTT TGGAGACTTT TTGATGTAAA 86545 .......... .......... .......... .......... .......... .......... 254 GGGCTTGATC CCTACTTGTA CTTCTTGTTG AAATGGTGAT AAGACAAAGT CTAGTTCTTA 86605 .......... .......... .......... .......... .......... .......... 254 TTTTTTCTTA TATGAAGAAG TTGACTTCTA TTGTGAAAGT TATCAAACTT TTTTCGTCAT 86665 .......... .......... .......... .......... .......... .......... 254 TTTCTTTGTC CTTATGAGAT GAAGCTTCAA GGGCTTGTAG ATGCCATATT ACTTTCTAGG 86725 .......... .......... .......... .......... .......... .......... 254 GAATAACCAC GGGTCGTGAC AATCATTTTT TCCAAAAATT TACATAGACG TTTGTTAAGA 86785 .......... .......... .......... .......... .......... .......... 254 CTTTAACATA GAGTCAGTTG GTCACCATTG CTAAAACGAT CATTTCGCAA GGTCAAACGA 86845 .......... .......... .......... .......... .......... .......... 254 GTCTAGAGCA GGTCCCCCTA GTTAATTCTA ACGTCATTTT TACCAAATTT TTTATGGGCT 86905 .......... .......... .......... .......... .......... .......... 254 AGTTGATCTT GATGGCCAAA ACGATTCATT TTCAAGGTCA AACAAGTCTT AAAGTATTTT 86965 .......... .......... .......... .......... .......... .......... 254 ATCGATTTTC GTGTGCTATA TAGTCCACCA TCTTTTTTGG TGATCCCAAA TTCGATGTCA 87025 .......... .......... .......... .......... .......... .......... 254 TATTTGCCAA AAAAATTCAT CGACGTCCGT TAAGACCTTA GTTGTGGAGC CAATTGGCCT 87085 .......... .......... .......... .......... .......... .......... 254 TGATGGCTAA AACGACCCAT TTCAAGGTCT AACAAGCTCA AAGCAAGTAA AACCTCTATT 87145 .......... .......... .......... .......... .......... .......... 254 CTGGTAATTT TTGTGTTTTA TATAGTCCAC CATCTTTTTT AGTGATTTAG AATATTGACG 87205 .......... .......... .......... .......... .......... .......... 254 TCATTTTTGC CAATATTTTT CATGGACGTC CGTTAAAACT TTAGTTGTGG ATCCA 87260 || | | |||| .......... .......... .......... .......... ....TTTTCG GTCCA 265 hqPGS_C09HBa0109D11.1+_SGN-E206496- (86007 86261) ******************************************************************************** EST sequence 65 -strand 302 n (File: SGN-E370622-) 1 CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 61 ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 181 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CATTATCCAC CGAGTTTAGA 241 AGGTTGTGAT TAGTCCAAAG GGGCGGGTCA TAGGCATATT TCTAGGTTAT CAAAAAAAAA 301 AA Predicted gene structure (within gDNA segment 85253 to 88870): Exon 1 86052 86274 ( 223 n); cDNA 1 222 ( 222 n); score: 0.915 PPA cDNA 292 302 MATCH C09HBa0109D11.1+ SGN-E370622- 0.915 223 0.738 C PGS_C09HBa0109D11.1+_SGN-E370622- (86052 86274) Alignment (genomic DNA sequence = upper lines): CATGTATTCC GAGTCAATTG ATTGAGGTTG TTTCTCTCTA TATTTTGTAC TCTCATATTT 86111 |||||||||| |||| ||||| ||||||||| ||||||||| |||||||||| |||||||||| CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 60 ATAGTGGATT GCTCATCTCC TTTGTGGACT TAGATCGATT GACCGAACTA CGTTAAATCT 86171 ||||| |||| |||||||||| ||||||||| ||| |||||| |||||||| | |||||||||| ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 TTGTGTCTTT TGATATACTT CTCATTGTCT TCTTACTCGT GGTCTTTTGA GGTTTTGCTT 86231 |||||||||| || |||| || ||| ||||| |||||||||| ||| |||||| || ||||| | TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GG-TTTGCGT 179 TGCTAGCTTT CGCATTTACA CCTGCTTGAT TCCGGTCCTA ACA 86274 ||||||||| ||| |||||| ||||||| | | |||||||| ||| TGCTAGCTTC CGCGTTTACA CCTGCTTATT TTCGGTCCTA ACA 222 hqPGS_C09HBa0109D11.1+_SGN-E370622- (86052 86274) ******************************************************************************** EST sequence 46 +strand 785 n (File: SGN-E544264+) 1 AAAAATATGG GGAGCAAGAC AATTTTGAAT GGTTTTGTGG TTTTGGTGTT TGTTGGATGG 61 CTTTTCATAT GGGTAATGTT ACCTACACCT ACTTACAAAA ATTCATGGAC TCCACATCTA 121 CTAATCAAAC TCAACTCTAC ATATTTCAGG GAACAAGGGA TAAATCTTCT TTTATTTACA 181 TTTCCCATAA TGTTGATAGC TGCTGTGAGC TGTGTTTATC TTCATCTTTA CAACAAGTCA 241 ACTTCTAATC ACAGGTTAAT CAATTACATG TTGAGTTTTA TTTGCAACCA CGTTAAATCT 301 TTGTGTCTTT GGGTATATTT CTCGTTGTCT TCTTACTCGT AGTCTTTTGA GGTTTGCTTT 361 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGATCCTAA CATTACATAC TAATTATTAA 421 TGATCTATCT TTGATATATC TCTTTTAACT AACATACAAT TATATTGTTA GGAGTAGTAA 481 TAAAGTGCGG GAATATTTTA GACGGCCACG GCTTGTAATT GAATCTCTTG GAATTGTAAA 541 CGCGGTTGAA CTTATTTTCG CTGCGATGTT TACCGTTCTT CTTATTTGGT CTTTAGCCAA 601 CTACATCTAC ATCAGCTATG GTAATCTTCA TATGCATAAT CCCGCCGAAA AAGTTTGGAT 661 GGCGAAGTTT AGAAGTGTTG CATTGAGGCT TGGGTACATT GGGAATGTTT GTTATGCGTT 721 TTTGTTTTCC CAGTGACTCG ATTATCGTCA ATTTTGCCGC TGGTGGGGCT AACTTCTGAA 781 TCAAG Predicted gene structure (within gDNA segment 82671 to 91620): Exon 1 85016 85047 ( 32 n); cDNA 233 264 ( 32 n); score: 0.594 Intron 1 85048 85390 ( 343 n); Pd: 0.870 (s: 0), Pa: 0.000 (s: 0) Exon 2 85391 85414 ( 24 n); cDNA 265 285 ( 21 n); score: 0.667 Intron 2 85415 86156 ( 742 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 86157 86275 ( 119 n); cDNA 286 403 ( 118 n); score: 0.882 Intron 3 86276 90433 (4158 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.54) Exon 4 90434 90505 ( 72 n); cDNA 404 475 ( 72 n); score: 0.604 MATCH C09HBa0109D11.1+ SGN-E544264+ 0.777 247 0.315 C PGS_C09HBa0109D11.1+_SGN-E544264+ (85016 85047,85391 85414,86157 86275,90434 90505) Alignment (genomic DNA sequence = upper lines): ACATGCCACT AAATAATACC AGATTCAATA ATGCACAAAC AGACACTTTA AATATTCAAT 85075 ||| | || |||| | || || | | || ACAAGTCAAC TTCTAATCAC AGGTTAATCA AT........ .......... .......... 264 TTTTTAAATA ATGACAAAAT ACATGTAGAA GAAAAAAAAA TGTGTGACGA CAACAATTCA 85135 .......... .......... .......... .......... .......... .......... 264 TTGACAATTT AAATAGTAAA AAAAAACTTA CACCTTTTCA CAAGGGTTAA ATACATATAA 85195 .......... .......... .......... .......... .......... .......... 264 TCAAAAATTG AATATTTAAT GCTAAGTTTA TATAACAAAT ATTAATAAAT CCAACAACCA 85255 .......... .......... .......... .......... .......... .......... 264 TATAAAGATG AAACTAGAGC AATTATGTTC ATTTTAACTT AAACAGCATT CACAATATAA 85315 .......... .......... .......... .......... .......... .......... 264 ACTTAAAGGG CTTTGAGAGT TTTTGTTAGA GGAAAAATTT ATGGGTCACA AGCTTGAACC 85375 .......... .......... .......... .......... .......... .......... 264 TCCCATTATT CCGAGTAAAT TGGTTGAGGT TGTACTCTCA TCTCCTTTGT GGACAGGTCG 85435 || | | |||||| | | || | | .......... .....TACA- T-GTTGAG-T TTTATTTGC. .......... .......... 285 ATTGCTCGAA CCATGTTAAA TCTTTGAGTC TTTTGATATA TTTCCCGTTG TCTTTTTACT 85495 .......... .......... .......... .......... .......... .......... 285 CGTGGTCTTT TGAGGTTTTG CTTTGTTAGC TTTCGCATTT ACACCTGCTT GTTTTCGGTC 85555 .......... .......... .......... .......... .......... .......... 285 CTAACAAGTG GTAACAGAGC TAGATTCAAT GACGGAGTTG GGTTTAGTGG TTCGATAATC 85615 .......... .......... .......... .......... .......... .......... 285 GATTATTGAA TCAGGTTAGA AAGAGGTGTT CATCTTGGCG GGTGCAATTC TAGCCACAAC 85675 .......... .......... .......... .......... .......... .......... 285 CTTTTTTGAT AGTAATGAAG ATTTTGTTGA AGAATTGTTT CAGAGAGGTT CTCTGTGTTG 85735 .......... .......... .......... .......... .......... .......... 285 AGACATAAAT TTTGCAAAGG AGATTATGGA GAGAAGAAGC AAGTTGTTAA AGATTAAGTG 85795 .......... .......... .......... .......... .......... .......... 285 AAGAAGGTAG ACAATTAGAA ATTCAGGTCA AGGAAAAGAT TTGTTGGAAA TCCAGGTCCT 85855 .......... .......... .......... .......... .......... .......... 285 GATTTCTTAC CATTAATAGG TTTTGGATTG ACTAATCCTT CTTCTGGTAG GAAAAGGTTT 85915 .......... .......... .......... .......... .......... .......... 285 AGAACTTTAT AAATAAAGGT ATGTTCCTTC TAACTTAATC AGCATTCACA ATGTAATCTT 85975 .......... .......... .......... .......... .......... .......... 285 AAAGGCTTTG AAAGTTTTGG TTAGAGGGAG AATTTATGAG TCACATGCTT GATAAGTTAT 86035 .......... .......... .......... .......... .......... .......... 285 TACTTGTGGG AACCTCCATG TATTCCGAGT CAATTGATTG AGGTTGTTTC TCTCTATATT 86095 .......... .......... .......... .......... .......... .......... 285 TTGTACTCTC ATATTTATAG TGGATTGCTC ATCTCCTTTG TGGACTTAGA TCGATTGACC 86155 .......... .......... .......... .......... .......... .......... 285 GAACTACGTT AAATCTTTGT GTCTTTTGAT ATACTTCTCA TTGTCTTCTT ACTCGTGGTC 86215 ||| ||||| |||||||||| |||||| | | ||| ||||| |||||||||| |||||| ||| .AACCACGTT AAATCTTTGT GTCTTTGGGT ATATTTCTCG TTGTCTTCTT ACTCGTAGTC 344 TTTTGAGGTT TTGCTTTGCT AGCTTTCGCA TTTACACCTG CTTGATTCCG GTCCTAACAA 86275 |||||||| | |||||||||| ||||| ||| |||||||||| ||| || || |||||||| TTTTGAGG-T TTGCTTTGCT AGCTTCCGCG TTTACACCTG CTTATTTTCG ATCCTAACAT 403 GTGGTATCAA AAGTCAGATT CAATGACGGA GTCAGATTCA GTGGTTCGAT AATCAATTAT 86335 .......... .......... .......... .......... .......... .......... 403 TGAACCAGAT TAAAAAGAAG TATTCATCTT GGCTGGTGCA GTTCTAGCCG CAACCTTATT 86395 .......... .......... .......... .......... .......... .......... 403 ACTTCCTTGA AAGTGAAGCT TGGGTCGATT ATTTCCCCGG CTTGGTGAGT CCTCAACTTT 86455 .......... .......... .......... .......... .......... .......... 403 GAGGACAAGT GCATTTGTTT CTAGTTTATA GTTTCTTCTA TACTCTAAAC TATGTTGTAT 86515 .......... .......... .......... .......... .......... .......... 403 TTCCTATTTT TGGAGACTTT TTGATGTAAA GGGCTTGATC CCTACTTGTA CTTCTTGTTG 86575 .......... .......... .......... .......... .......... .......... 403 AAATGGTGAT AAGACAAAGT CTAGTTCTTA TTTTTTCTTA TATGAAGAAG TTGACTTCTA 86635 .......... .......... .......... .......... .......... .......... 403 TTGTGAAAGT TATCAAACTT TTTTCGTCAT TTTCTTTGTC CTTATGAGAT GAAGCTTCAA 86695 .......... .......... .......... .......... .......... .......... 403 GGGCTTGTAG ATGCCATATT ACTTTCTAGG GAATAACCAC GGGTCGTGAC AATCATTTTT 86755 .......... .......... .......... .......... .......... .......... 403 TCCAAAAATT TACATAGACG TTTGTTAAGA CTTTAACATA GAGTCAGTTG GTCACCATTG 86815 .......... .......... .......... .......... .......... .......... 403 CTAAAACGAT CATTTCGCAA GGTCAAACGA GTCTAGAGCA GGTCCCCCTA GTTAATTCTA 86875 .......... .......... .......... .......... .......... .......... 403 ACGTCATTTT TACCAAATTT TTTATGGGCT AGTTGATCTT GATGGCCAAA ACGATTCATT 86935 .......... .......... .......... .......... .......... .......... 403 TTCAAGGTCA AACAAGTCTT AAAGTATTTT ATCGATTTTC GTGTGCTATA TAGTCCACCA 86995 .......... .......... .......... .......... .......... .......... 403 TCTTTTTTGG TGATCCCAAA TTCGATGTCA TATTTGCCAA AAAAATTCAT CGACGTCCGT 87055 .......... .......... .......... .......... .......... .......... 403 TAAGACCTTA GTTGTGGAGC CAATTGGCCT TGATGGCTAA AACGACCCAT TTCAAGGTCT 87115 .......... .......... .......... .......... .......... .......... 403 AACAAGCTCA AAGCAAGTAA AACCTCTATT CTGGTAATTT TTGTGTTTTA TATAGTCCAC 87175 .......... .......... .......... .......... .......... .......... 403 CATCTTTTTT AGTGATTTAG AATATTGACG TCATTTTTGC CAATATTTTT CATGGACGTC 87235 .......... .......... .......... .......... .......... .......... 403 CGTTAAAACT TTAGTTGTGG ATCCAGTTGA CCCTGATGGC CAAAACAATC CATTTTCAAA 87295 .......... .......... .......... .......... .......... .......... 403 GTCAAACGAG CTCAGAGTAG GTAAACTCCC ATTTTACCTA TTTTCGTGTG TTATAGTTCA 87355 .......... .......... .......... .......... .......... .......... 403 CCATTTTTTT GTGATCCAAA TTCCACGTCA TATTTTATGA AATTTTTCAT GGACGTCCAT 87415 .......... .......... .......... .......... .......... .......... 403 TAAAACTTTA GTTATGGAGC CCGTTGACCC CGACGGTCAA AACGATCCAT TTTCATGGTA 87475 .......... .......... .......... .......... .......... .......... 403 AAACGAGTCA TACATCAAGT ATACCCCCAT TTTGTCGATT TTCATGTGCT ATAGTCCATG 87535 .......... .......... .......... .......... .......... .......... 403 AATTTGGTGA TCCAGAATTT CGACGTCATT TTTTTCAAAA TTTTACATGG ACGTCCGTTA 87595 .......... .......... .......... .......... .......... .......... 403 AGACCTTAAT CATGGAGTCA GTTGGTCCCC AAGACCAAAA GGACTTATTC ACAAGGTTAA 87655 .......... .......... .......... .......... .......... .......... 403 ACAAGTCACG GAGCAGGTAA ACCCCCAAAT TTCGAAGTCT TTTTTTTTCA AAAATTTACA 87715 .......... .......... .......... .......... .......... .......... 403 TGGACCTCCA TTAAGACCTC AGACATGGAG CCAGTTGGTC ACCACGACCA AAACGACTCA 87775 .......... .......... .......... .......... .......... .......... 403 TTTTCAAGGT CAAACGAGCC CAGAGCAGAT AAACCCCTTA TTTTATCGAT TTTCATGTGC 87835 .......... .......... .......... .......... .......... .......... 403 ATAGTCCATG AATTTTGGTG ATTTGAAATT TCGACGTCAT TTTTGTCAAA AATTACATAG 87895 .......... .......... .......... .......... .......... .......... 403 ATATCCTTCG AAACAACCAA TTTTCAAGAT CAAATAAACC CTAGAGCAAG TAAACCTCGA 87955 .......... .......... .......... .......... .......... .......... 403 ATTTTACTAA TTTTCATGTG TTATAACACA TAAAATCTAT CGTCTTTTAT TTTAAAATAA 88015 .......... .......... .......... .......... .......... .......... 403 AACAACTATA ATGATGACAA ATTATCCATT AGTTCACTTA TTTTAATGTA ATATAGTTGC 88075 .......... .......... .......... .......... .......... .......... 403 ACCACTTACA AATTTCAGGG ACATGCCACT GAATAAAACA ATCACTCAAT ACTAAAAAAA 88135 .......... .......... .......... .......... .......... .......... 403 AAAAGAAAGT GTTACAGCAA CAATTCAAAC TTCTCATTTC TCATTAATTC AAATAAGAAA 88195 .......... .......... .......... .......... .......... .......... 403 AAACTTACAA CATAGTTACA TGGCTAAATC AAAACCTTTA ACTTACATAA CTCCCTCTCT 88255 .......... .......... .......... .......... .......... .......... 403 TATTGGATAT AAATGAATAA GAAAAAAAAT AATAAACATA ATCAAAAATT GGAAATGCTA 88315 .......... .......... .......... .......... .......... .......... 403 AATCTATATA AATAAGGGTC ATAATAAATC CAACAACTAC CAGAACTATA ATTAGCCACC 88375 .......... .......... .......... .......... .......... .......... 403 ATACATCTTT GTTCAAAAAA ATATTTTCAA GATTTAGAGT TTGCACACAT GCCAAAACTG 88435 .......... .......... .......... .......... .......... .......... 403 AAAATGTTGT GGCATAAAAT ACTGAAACCA TAGCAATTAT GACCCTTATA GGCAAAGAAA 88495 .......... .......... .......... .......... .......... .......... 403 TATAAAAATC ATCACTATGA AATTTGCAAA GAATAAATGA TAACAACGTA CCAATTGTGA 88555 .......... .......... .......... .......... .......... .......... 403 CTAGTGAACT TATAAGTGCT GCACCTAAGT AAAATATCAA CATCCATATT TCATCTTTCA 88615 .......... .......... .......... .......... .......... .......... 403 ATTTTTGGAG GAAGATTGGC AGGCCAGTTG TCTGATCAAA TCCTCCAGGG ACTGTAAAAA 88675 .......... .......... .......... .......... .......... .......... 403 TAGCAGCGAA ATTGACTGTG CAGAGGAGAG TAGCAAGTAC TAGAGCTGAA TTCGCTAGGT 88735 .......... .......... .......... .......... .......... .......... 403 TTCTAATCGC GTCCTCTGCT TCTTTTCGTA TTTGTTGATG GTTTTTTTCG AATAGCTCTT 88795 .......... .......... .......... .......... .......... .......... 403 CTGCTGTTAC ACCCTTGGAG TTTTTTATGT CCCACAGGCG CGGATGTACG TGGTGTTTTA 88855 .......... .......... .......... .......... .......... .......... 403 CGTGCTGCAA AGATAAAAAC TGTCATCTTC TCAATACATA TTGTATCGAA TCATCTGATT 88915 .......... .......... .......... .......... .......... .......... 403 TAGCTCATCA TTAAATTAGA AATCACATTA TTTCAGAGCT TGTGTAGTTG ATTTTGAAGG 88975 .......... .......... .......... .......... .......... .......... 403 TAATTGGAGT AGTACTAGAC ATTGTATGTG GTAGGCGCTG TCACTCCCTT AGCAATCAAA 89035 .......... .......... .......... .......... .......... .......... 403 CTTATGCCTA GTAGGGCATA AGTTCTTTAA GGATGCAGGA CATACTCAAA TTAGTTATAG 89095 .......... .......... .......... .......... .......... .......... 403 TTTTACGTTG ACTGTCAGCC TAAAAATGAA ACCAACAATA TGAGCAAACT CACACGGCGT 89155 .......... .......... .......... .......... .......... .......... 403 TAGCACAACA TAAATACACA CAAAAAGAGA AAAGAAAAGA GAAAAAGTAC CTTAAACCAA 89215 .......... .......... .......... .......... .......... .......... 403 AGGATCCCCC ACATCATCAT GAACACAGAC AAAACACACC ACACTTCATC AAAATGCTCT 89275 .......... .......... .......... .......... .......... .......... 403 GAACTTGATG TTCTAAATGG TGATCCAACA TTTGCTGCAT AATGCAATAT TGTATTCCCT 89335 .......... .......... .......... .......... .......... .......... 403 TCTTCATCAA CATCAGCCAA CATCCTTTCT ATATGACCCA CTTTTTTCAC CAAATAATCA 89395 .......... .......... .......... .......... .......... .......... 403 AACAAAAATC TGTTCTTATG TTCCACTGCT ATATGCAATA TATTCCTCTT TTGTTCATCC 89455 .......... .......... .......... .......... .......... .......... 403 AATGTCTCAA CAACTTCAGG GTAAATTTCC AAAATTTCAA CAACTAACTC ATTGATTTTG 89515 .......... .......... .......... .......... .......... .......... 403 AGATTTGATG CTTGTATTAG TGGATTTGGC ACAATGTAGT CAGTATTATA GCTCCAATCA 89575 .......... .......... .......... .......... .......... .......... 403 TAATTTTCCA GCAACATTTT TGCTAATATT AGAGCAAGAA TATGGTTTTG CTTTGCTTCA 89635 .......... .......... .......... .......... .......... .......... 403 TCAATGACTT GTAACCAGAC ATTACCTAAA ATACAAAAAA GATATATACA AGTGAGAAAG 89695 .......... .......... .......... .......... .......... .......... 403 TAGGGCATTA AGAGTTTGAC TAATATCTAC CGACAGTCTA AAGAATTTAC ACTATCAAGT 89755 .......... .......... .......... .......... .......... .......... 403 CACCTTTACA TGTTGTAGCA GGTGGCGTGT CTTATATTTT TCAAAACTAC AAATTCGTTT 89815 .......... .......... .......... .......... .......... .......... 403 TATATAATGG AGAATTAGAC ATATAATTTT TACACTATCA GGTTATCTAT ACATGTCATA 89875 .......... .......... .......... .......... .......... .......... 403 ATAGGCATAT AATTTTTACA CTATCAGGTT ATCTATACAT GTCATAATAG GCACATAATA 89935 .......... .......... .......... .......... .......... .......... 403 TATACTATTT TAGCAAATAT AAAAGTGGTA TATTCAATTC TTAATATGAA TCATATAATG 89995 .......... .......... .......... .......... .......... .......... 403 GATGATTAAA TGAAGGGGCA TATATATACC TAACAGAAAA TTGGTGAATA AAGACCTTTC 90055 .......... .......... .......... .......... .......... .......... 403 TCTGCTGAAA ATTTTGGTGC TAGCTTGTGT ATACAAAGGA GGAATACCTG CTCCATCAAA 90115 .......... .......... .......... .......... .......... .......... 403 TAGCAAATTA AATGTAGGTA ATAACCGTAG TCAAAATTAG AGAAAGTAAA TTTGGACTAT 90175 .......... .......... .......... .......... .......... .......... 403 TTTTTCCTCA AGTATTTTGA CAGGTGGAAA TACGATGCGA TTAACTAATA ATAAGAATAT 90235 .......... .......... .......... .......... .......... .......... 403 GAAGGACCTC AAGACAAGTA GAGCAATATT AAATGTGAGC TTACATGAAT AGATTATGGT 90295 .......... .......... .......... .......... .......... .......... 403 TTCAATCATC TGAAAAGGAA CAGAAGGTGT TTTCCCTATT TCTTCAAATA AATATTCAGA 90355 .......... .......... .......... .......... .......... .......... 403 TCCACTCTTG AATGATAATT GCTTTGTAGC CAACACATTC AAAGCACTCA TTTTCTCATT 90415 .......... .......... .......... .......... .......... .......... 403 ATCACTTTGG CTAACAAGTT CAGGATATTG ATTCACTATA TAT-ATTGCT AGATCTGCTT 90474 | || || | ||| | || ||| ||| | | |||| || .......... ........TA CATACTAATT ATTAATGATC TATCTTTGAT ATATCTCTTT 445 CACATGAAAC AAAATAATTA TAATTAGGAG T 90505 | | | | | ||| | || | ||||||| | TAACTAACAT ACAATTA-TA TTGTTAGGAG T 475 hqPGS_C09HBa0109D11.1+_SGN-E544264+ (86157 86275) ******************************************************************************** EST sequence 104 +strand 557 n (File: SGN-E251427+) 1 TAGAGGTGTT ATTCCTCTTG TTGATGCAGA TATACAAACC TCTGGTGCAA AAGCTGCTTC 61 TTGTGCTCAA TTAGCTTCAC TGGCCACTTC TTCTACTAAA GTTTATAGTG ACCAAGGTGC 121 ACCAGCATCA TTTAAAGTTC CTGCTGGAGC AGTTATTCCA TTTGGTTCCA TGGAAACGGC 181 ATTGGAAACG AACAAGTTAA TGGAGACCTT CACATTGCTT GTTGAGCAGA TAGAAACAGC 241 TGAAATTGAT GGCGGTGAAC TTGATAAACA CTGTGAGGAT CTCCAGAAGT TAATATCTTC 301 GTTATTGCCT GGACAAGATG TCATCGAAAG CTTGGGAGAA ATATTTCCCG GTAATGCACG 361 TTTAATAGTG CGTTCAAGTG CTAATGTCGA GGACTTGGCG GGGATGTCAG CAGCCGGACT 421 TTATGATTCA ATTCCTAATG TTAGCCCTTC AGATCCGGTA AGGTTTGGAC ATGCTGTAGC 481 CCGTGTTTGG GCCTCGTTGT ATACTAGAAG AGCAGTACTG AGCCGCAGAG CTGCTGGTGT 541 GTCCCAGAAA GATGCTA Predicted gene structure (within gDNA segment 94059 to 91937): Exon 1 93459 93359 ( 101 n); cDNA 1 101 ( 101 n); score: 1.000 Intron 1 93358 93003 ( 356 n); Pd: 0.082 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 93002 92547 ( 456 n); cDNA 102 557 ( 456 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E251427+ 1.000 557 1.000 C PGS_C09HBa0109D11.1-_SGN-E251427+ (93459 93359,93002 92547) Alignment (genomic DNA sequence = upper lines): TAGAGGTGTT ATTCCTCTTG TTGATGCAGA TATACAAACC TCTGGTGCAA AAGCTGCTTC 93400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGTGTT ATTCCTCTTG TTGATGCAGA TATACAAACC TCTGGTGCAA AAGCTGCTTC 60 TTGTGCTCAA TTAGCTTCAC TGGCCACTTC TTCTACTAAA GGTAGTCTTG GTTCTTTGCA 93340 |||||||||| |||||||||| |||||||||| |||||||||| | TTGTGCTCAA TTAGCTTCAC TGGCCACTTC TTCTACTAAA G......... .......... 101 GGACAACCCT CTCTTCATAT CATCCGTACT TGTTACTATT TTATTCTTAG TTGCTGTAGC 93280 .......... .......... .......... .......... .......... .......... 101 TAAAATGTCA ATTCTGCTTA ACGAACCCTT TATTTAAAAA TGAAAGTTCC ATGTAAATGT 93220 .......... .......... .......... .......... .......... .......... 101 TTTTGCTCCC ATTCTATTTT TTTTTTTTCC TTTTTCCAGT TGAAAATTTG GTCCTTTGCA 93160 .......... .......... .......... .......... .......... .......... 101 TTTCCTATGT TTGTCATAGT TAAATTTCGG TGTTGGTCAA CATCGATTGG TACTTTATTT 93100 .......... .......... .......... .......... .......... .......... 101 TTGCGTTTAG CTTATCATAG CACAAACGAT GGATGCCATT GGTGCAATAT ATGTCTTTGC 93040 .......... .......... .......... .......... .......... .......... 101 CCTTTTTTTT TGGGTCTGAT GATTTATCTG ATTGCAGTTT ATAGTGACCA AGGTGCACCA 92980 ||| |||||||||| |||||||||| .......... .......... .......... .......TTT ATAGTGACCA AGGTGCACCA 124 GCATCATTTA AAGTTCCTGC TGGAGCAGTT ATTCCATTTG GTTCCATGGA AACGGCATTG 92920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCATTTA AAGTTCCTGC TGGAGCAGTT ATTCCATTTG GTTCCATGGA AACGGCATTG 184 GAAACGAACA AGTTAATGGA GACCTTCACA TTGCTTGTTG AGCAGATAGA AACAGCTGAA 92860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACGAACA AGTTAATGGA GACCTTCACA TTGCTTGTTG AGCAGATAGA AACAGCTGAA 244 ATTGATGGCG GTGAACTTGA TAAACACTGT GAGGATCTCC AGAAGTTAAT ATCTTCGTTA 92800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATGGCG GTGAACTTGA TAAACACTGT GAGGATCTCC AGAAGTTAAT ATCTTCGTTA 304 TTGCCTGGAC AAGATGTCAT CGAAAGCTTG GGAGAAATAT TTCCCGGTAA TGCACGTTTA 92740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTGGAC AAGATGTCAT CGAAAGCTTG GGAGAAATAT TTCCCGGTAA TGCACGTTTA 364 ATAGTGCGTT CAAGTGCTAA TGTCGAGGAC TTGGCGGGGA TGTCAGCAGC CGGACTTTAT 92680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTGCGTT CAAGTGCTAA TGTCGAGGAC TTGGCGGGGA TGTCAGCAGC CGGACTTTAT 424 GATTCAATTC CTAATGTTAG CCCTTCAGAT CCGGTAAGGT TTGGACATGC TGTAGCCCGT 92620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAATTC CTAATGTTAG CCCTTCAGAT CCGGTAAGGT TTGGACATGC TGTAGCCCGT 484 GTTTGGGCCT CGTTGTATAC TAGAAGAGCA GTACTGAGCC GCAGAGCTGC TGGTGTGTCC 92560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGGGCCT CGTTGTATAC TAGAAGAGCA GTACTGAGCC GCAGAGCTGC TGGTGTGTCC 544 CAGAAAGATG CTA 92547 |||||||||| ||| CAGAAAGATG CTA 557 hqPGS_C09HBa0109D11.1-_SGN-E251427+ (93459 93359,93002 92547) ******************************************************************************** EST sequence 70 +strand 487 n (File: SGN-E551438+) 1 GTGTTATTCC TCTTGTTGAT GCAGATATAC AAACCTCTGG TGCAAAAGCT GCTTCTTGTG 61 CTCAATTAGC TTCACTGGCC ACTTCTTCTA CTAAAGTTTA TAGTGACCAA GGTGCACCAG 121 CATCATTTAA AGTTCCTGCT GGAGCAGTTA TTCCATTTGG TTCCATGGAA ACGGCATTGG 181 AAACGAACAA GTTAATGGAG ACCTTCACAT TGCTTGTTGA GCAGATAGAA ACAGCTGAAA 241 TTGATGGCGG TGAACTTGAT AAACACTGTG AGGATCTCCA GAAGTTAATA TCTTCGTTAT 301 TGCCTGGACA AGATGTCATC GAAAGCTTGG GAGAAATATT TCCCGGTAAT GCACGTTTAA 361 TAGTGCGTTC AAGTGCTAAT GTCGAGGACT TGGCGGGGAT GTCAGCAGCC GGACTTTATG 421 ATTCAATTCC TAATGTTAGC CCTTCAGATC CGGTAAGGTT TGGACATGCT GTAGCCCGTG 481 TTTGGGC Predicted gene structure (within gDNA segment 94054 to 92002): Exon 1 93454 93359 ( 96 n); cDNA 1 96 ( 96 n); score: 1.000 Intron 1 93358 93003 ( 356 n); Pd: 0.082 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 93002 92612 ( 391 n); cDNA 97 487 ( 391 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E551438+ 1.000 487 1.000 C PGS_C09HBa0109D11.1-_SGN-E551438+ (93454 93359,93002 92612) Alignment (genomic DNA sequence = upper lines): GTGTTATTCC TCTTGTTGAT GCAGATATAC AAACCTCTGG TGCAAAAGCT GCTTCTTGTG 93395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTATTCC TCTTGTTGAT GCAGATATAC AAACCTCTGG TGCAAAAGCT GCTTCTTGTG 60 CTCAATTAGC TTCACTGGCC ACTTCTTCTA CTAAAGGTAG TCTTGGTTCT TTGCAGGACA 93335 |||||||||| |||||||||| |||||||||| |||||| CTCAATTAGC TTCACTGGCC ACTTCTTCTA CTAAAG.... .......... .......... 96 ACCCTCTCTT CATATCATCC GTACTTGTTA CTATTTTATT CTTAGTTGCT GTAGCTAAAA 93275 .......... .......... .......... .......... .......... .......... 96 TGTCAATTCT GCTTAACGAA CCCTTTATTT AAAAATGAAA GTTCCATGTA AATGTTTTTG 93215 .......... .......... .......... .......... .......... .......... 96 CTCCCATTCT ATTTTTTTTT TTTCCTTTTT CCAGTTGAAA ATTTGGTCCT TTGCATTTCC 93155 .......... .......... .......... .......... .......... .......... 96 TATGTTTGTC ATAGTTAAAT TTCGGTGTTG GTCAACATCG ATTGGTACTT TATTTTTGCG 93095 .......... .......... .......... .......... .......... .......... 96 TTTAGCTTAT CATAGCACAA ACGATGGATG CCATTGGTGC AATATATGTC TTTGCCCTTT 93035 .......... .......... .......... .......... .......... .......... 96 TTTTTTGGGT CTGATGATTT ATCTGATTGC AGTTTATAGT GACCAAGGTG CACCAGCATC 92975 |||||||| |||||||||| |||||||||| .......... .......... .......... ..TTTATAGT GACCAAGGTG CACCAGCATC 124 ATTTAAAGTT CCTGCTGGAG CAGTTATTCC ATTTGGTTCC ATGGAAACGG CATTGGAAAC 92915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAAAGTT CCTGCTGGAG CAGTTATTCC ATTTGGTTCC ATGGAAACGG CATTGGAAAC 184 GAACAAGTTA ATGGAGACCT TCACATTGCT TGTTGAGCAG ATAGAAACAG CTGAAATTGA 92855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAAGTTA ATGGAGACCT TCACATTGCT TGTTGAGCAG ATAGAAACAG CTGAAATTGA 244 TGGCGGTGAA CTTGATAAAC ACTGTGAGGA TCTCCAGAAG TTAATATCTT CGTTATTGCC 92795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGGTGAA CTTGATAAAC ACTGTGAGGA TCTCCAGAAG TTAATATCTT CGTTATTGCC 304 TGGACAAGAT GTCATCGAAA GCTTGGGAGA AATATTTCCC GGTAATGCAC GTTTAATAGT 92735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACAAGAT GTCATCGAAA GCTTGGGAGA AATATTTCCC GGTAATGCAC GTTTAATAGT 364 GCGTTCAAGT GCTAATGTCG AGGACTTGGC GGGGATGTCA GCAGCCGGAC TTTATGATTC 92675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTCAAGT GCTAATGTCG AGGACTTGGC GGGGATGTCA GCAGCCGGAC TTTATGATTC 424 AATTCCTAAT GTTAGCCCTT CAGATCCGGT AAGGTTTGGA CATGCTGTAG CCCGTGTTTG 92615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCTAAT GTTAGCCCTT CAGATCCGGT AAGGTTTGGA CATGCTGTAG CCCGTGTTTG 484 GGC 92612 ||| GGC 487 hqPGS_C09HBa0109D11.1-_SGN-E551438+ (93454 93359,93002 92612) ******************************************************************************** EST sequence 116 +strand 663 n (File: SGN-E344684+) 1 TTCACATCGC TTGGAGGCTC TCACGTATGC AGCTGTCTAT CTAAAGTGGA TAAATACAGG 61 GCAAATTCCT TGCCTTGAAG ATGGGGGTCA CCATCGACCA AATAGACATG CAGAGATTTC 121 CAGGCTTATA TTTCGTGAAG TAGAAAAAGT CTTGAGCAGG AAAGACACTA CACTTCAGGA 181 AATACTTGTG ATCCGCAAGA TGCAACCGTG CTTGCCTTCT TTTAAAGCAG AATTCACTGC 241 ATCCGTTCCT TTAACGAGAA TCAGGGACAT CGCTCATAGG AATGATATTC CGCATGATCT 301 TAAGCAAGAA ATCAAACATA CTATACAAAA CAAGCTCCAT AGAAATGCTG GCCCTGAAGA 361 TCTAGTATCC ACAGAAGCAA TGCTCGAAAG AATTACCAAA CAACCTGGAC AATACAGTGA 421 GGCATTTGTA GAGCAATTCA AGATTTTCCA CAATGAACTA AAAGATTTCT TCAATGCTGG 481 GAGTCTTGAT GAACAGCTGG AATCTATAAG AGAATCACTC GACGGAAGTA GCTTGACAAT 541 GCTTTCATCA TTCTTGGAGT CCAAAAAGGA ATTGGTTAGA TTGGATGAAA AACATAATGT 601 TTCAGAGACT GAAAGAACTG GATTTCTAGT CAGGACTATC AACTCTCTGA ATGCTCTTCG 661 TGA Predicted gene structure (within gDNA segment 100818 to 96350): Exon 1 100218 100173 ( 46 n); cDNA 1 46 ( 46 n); score: 1.000 Intron 1 100172 100104 ( 69 n); Pd: 0.964 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 100103 99972 ( 132 n); cDNA 47 178 ( 132 n); score: 1.000 Intron 2 99971 99130 ( 842 n); Pd: 0.981 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 99129 99004 ( 126 n); cDNA 179 304 ( 126 n); score: 1.000 Intron 3 99003 98893 ( 111 n); Pd: 0.999 (s: 1.00), Pa: 0.897 (s: 1.00) Exon 4 98892 98714 ( 179 n); cDNA 305 483 ( 179 n); score: 1.000 Intron 4 98713 98017 ( 697 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 98016 97932 ( 85 n); cDNA 484 568 ( 85 n); score: 1.000 Intron 5 97931 97055 ( 877 n); Pd: 0.882 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 6 97054 96960 ( 95 n); cDNA 569 663 ( 95 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E344684+ 1.000 663 1.000 C PGS_C09HBa0109D11.1-_SGN-E344684+ (100218 100173,100103 99972,99129 99004,98892 98714,98016 97932,97054 96960) Alignment (genomic DNA sequence = upper lines): TTCACATCGC TTGGAGGCTC TCACGTATGC AGCTGTCTAT CTAAAGGTCT CGTATATTTT 100159 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCACATCGC TTGGAGGCTC TCACGTATGC AGCTGTCTAT CTAAAG.... .......... 46 TAGATGACTT GCTTGATTCA TTTCTATCTC TACTGAATAT TACTCTTGGG TGCAGTGGAT 100099 ||||| .......... .......... .......... .......... .......... .....TGGAT 51 AAATACAGGG CAAATTCCTT GCCTTGAAGA TGGGGGTCAC CATCGACCAA ATAGACATGC 100039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATACAGGG CAAATTCCTT GCCTTGAAGA TGGGGGTCAC CATCGACCAA ATAGACATGC 111 AGAGATTTCC AGGCTTATAT TTCGTGAAGT AGAAAAAGTC TTGAGCAGGA AAGACACTAC 99979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATTTCC AGGCTTATAT TTCGTGAAGT AGAAAAAGTC TTGAGCAGGA AAGACACTAC 171 ACTTCAGGTG TTCAACCGTT AAGTGCACCT CATTACGCTT ATTTTAATTT TTGTTATGTC 99919 ||||||| ACTTCAG... .......... .......... .......... .......... .......... 178 TTTCGATTCT GGAACATGTT GGTTGCTCTT GAGAAATTAA TGTTGATCCG TTGAACTGGT 99859 .......... .......... .......... .......... .......... .......... 178 TCAATTCGTT CTGCAAATTC TTATTCGATT TGTTAAGTGG TGGTACTATA TGGTAACAAT 99799 .......... .......... .......... .......... .......... .......... 178 AAGTCATAGG TAACTGGAAA TCTCAACAAG GTAGAGGGGA AGCCCATTAT CTGCCGAGTT 99739 .......... .......... .......... .......... .......... .......... 178 TCGAACTGTG CCTTTTGTCC CTCAGGAATT TCTCGGTTAT AAAAAATGTG ACTGGAAATC 99679 .......... .......... .......... .......... .......... .......... 178 ACACAAATGT AACTTCAGTT TAGACGCAAC AGTAGATATT GATCTCTTTA GTATTTTGTT 99619 .......... .......... .......... .......... .......... .......... 178 AGGAAGAATT CAGTTGATCT ATGTTTTATT CCTTGAATTT TTATTTAGAG CACTGCTCTG 99559 .......... .......... .......... .......... .......... .......... 178 AAGAGAAAAT GTTATTGCTT CTACAATTGA GCTAATTCTG TGGTTCAGTT TTTTTTCTTC 99499 .......... .......... .......... .......... .......... .......... 178 TTGATGGTAA AATCAAATAT GCTTTTCTAA TGAAGAAGGG TCTGAACTTC TGACTGCTTT 99439 .......... .......... .......... .......... .......... .......... 178 TCTTTCTTAA ATCTCATTAA TATAGTTAGA AAGTTCCGTC GGCAAAGTAA CAATTGGTCA 99379 .......... .......... .......... .......... .......... .......... 178 ATATAAGCTC TTGCTTCAAA TATTATTAGA CCATACATCT GCTGTCTGTA ATATGATTAT 99319 .......... .......... .......... .......... .......... .......... 178 GAGATTTAAA GCTTTTGAGT TGAAATGCAA ACAAAAAGGT AACTTGGGAA CATGATACAG 99259 .......... .......... .......... .......... .......... .......... 178 GAAGGAAAGG GAGTTAGAAA AATCATCACT CTGAACTTTG TGGATATGAG TCAACCGTTA 99199 .......... .......... .......... .......... .......... .......... 178 TCTTGTTCTC GAGCTTTTCC TTACCCAGTT TTGAGTGGCT TAGAAAAGTT TTCTTTTCAT 99139 .......... .......... .......... .......... .......... .......... 178 TATATGCAGG AAATACTTGT GATCCGCAAG ATGCAACCGT GCTTGCCTTC TTTTAAAGCA 99079 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AAATACTTGT GATCCGCAAG ATGCAACCGT GCTTGCCTTC TTTTAAAGCA 229 GAATTCACTG CATCCGTTCC TTTAACGAGA ATCAGGGACA TCGCTCATAG GAATGATATT 99019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCACTG CATCCGTTCC TTTAACGAGA ATCAGGGACA TCGCTCATAG GAATGATATT 289 CCGCATGATC TTAAGGTTGT ATACTACCAA AATACTTATT TTTAATTTTT CCTTGCATTC 98959 |||||||||| ||||| CCGCATGATC TTAAG..... .......... .......... .......... .......... 304 TCAATATTTT CATGTTTTTT ACGTAATATA TTTGTCCTTC TTACTATTAA AATAACCTTA 98899 .......... .......... .......... .......... .......... .......... 304 CTTCAGCAAG AAATCAAACA TACTATACAA AACAAGCTCC ATAGAAATGC TGGCCCTGAA 98839 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......CAAG AAATCAAACA TACTATACAA AACAAGCTCC ATAGAAATGC TGGCCCTGAA 358 GATCTAGTAT CCACAGAAGC AATGCTCGAA AGAATTACCA AACAACCTGG ACAATACAGT 98779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTAGTAT CCACAGAAGC AATGCTCGAA AGAATTACCA AACAACCTGG ACAATACAGT 418 GAGGCATTTG TAGAGCAATT CAAGATTTTC CACAATGAAC TAAAAGATTT CTTCAATGCT 98719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATTTG TAGAGCAATT CAAGATTTTC CACAATGAAC TAAAAGATTT CTTCAATGCT 478 GGGAGGTATG ACCTTCATCT CTTACTTGTT TCAAAATATT TGATTTCACA AAAAGTCAGT 98659 ||||| GGGAG..... .......... .......... .......... .......... .......... 483 CCTATTATGG GATAAAAAGG AGATAAGTTT AGTAGATCGA CTAATCAAGC TTCTCCGTAG 98599 .......... .......... .......... .......... .......... .......... 483 CATGCATTGG TCCAGATCCA TTACTTTATA AAATACGCTT CTTCACTTGC TAGATAATAG 98539 .......... .......... .......... .......... .......... .......... 483 TGTCTCACCA GTATGTTGTT CCTCAATTTC TTCCTGAATT GTTTTTCTCT ACAACAATGT 98479 .......... .......... .......... .......... .......... .......... 483 TTTTTCTTTC CTATATTAAA TTTTGCTACT TTGCAGTACC CTCACTTTAT TAATTGAGAG 98419 .......... .......... .......... .......... .......... .......... 483 GTATCTAGAC ATGACATGTC TGAGAGATCA GTTGGCTCGT GATGTATGAA CTTCACTGTT 98359 .......... .......... .......... .......... .......... .......... 483 TGCTATCATA CGTGCAAATG TGGTTCTCTC CCAAGGAGAA AAAAGTAGAT TGATTGCATT 98299 .......... .......... .......... .......... .......... .......... 483 GTTATAGAGT CGTTTAAGGA TATTGTTAAG TAACTTTTAG TCTGATTAAA TGTGCTCTTT 98239 .......... .......... .......... .......... .......... .......... 483 GACAGTGAAG AAAAATGATT TGGGTGCATG TTATAGAATT TTCTCGTCCT TAGTAATGGG 98179 .......... .......... .......... .......... .......... .......... 483 TCACCCTTCA AGGGATATGT TTCTCCAGTA CGTAATTCCC AATCATGAAC GTCCGTATGA 98119 .......... .......... .......... .......... .......... .......... 483 TTTACACGGA ATTAATTAGG TGCAATATGT TCCTACAAAA ATGCTTACAC ACTGGAAAAT 98059 .......... .......... .......... .......... .......... .......... 483 GAAATTTGCT TGAAATAACT TCTTTCTGTT CTGTCTATTC AGTCTTGATG AACAGCTGGA 97999 |||||||| |||||||||| .......... .......... .......... .......... ..TCTTGATG AACAGCTGGA 501 ATCTATAAGA GAATCACTCG ACGGAAGTAG CTTGACAATG CTTTCATCAT TCTTGGAGTC 97939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATAAGA GAATCACTCG ACGGAAGTAG CTTGACAATG CTTTCATCAT TCTTGGAGTC 561 CAAAAAGGTC AGTGTATTTG TTTTGGTGAT AGCTCTACCT AAGAGAAGCT CCAAAGTTTT 97879 ||||||| CAAAAAG... .......... .......... .......... .......... .......... 568 TACTAATGCG ATGAGATTTT TAGCAATAGC TGTGTGTTCT TTGATATTAT GAATGTAGGT 97819 .......... .......... .......... .......... .......... .......... 568 TAAACTGTTA GTTAGGTATT TATGTACATA AATTTGACTT AGATGTAATA TAGTGAAGGT 97759 .......... .......... .......... .......... .......... .......... 568 TTACGAGCTA CTCGGGGCTT CTTTCATCTT TCTCAATTCA TATGGGTCAC TGACTCTGAT 97699 .......... .......... .......... .......... .......... .......... 568 CCGTACCCAC TCTTCAACTA TCTCTCTGCT CCAATTATCC TCTTCAGCCT ATTCTCTGTC 97639 .......... .......... .......... .......... .......... .......... 568 TCTCTACTTC AAACCCACTA TCTTCTAAAC AAAAGGAAAA AGGTATAAAA GAAAAACAAG 97579 .......... .......... .......... .......... .......... .......... 568 TAAAAAAGGA AAATCTTTCA CCCACATGTA AACCTAGAAT CTGTTTACTC ATGCGGCATA 97519 .......... .......... .......... .......... .......... .......... 568 CAAGAAGGTG TGGGAGAATA GAGTGTCCCT CACGATTGTG CAAGAATTTC TAAAAGAGTT 97459 .......... .......... .......... .......... .......... .......... 568 TTCAGTGTCA TGGGTGACGC CATCGATAAC CTTAAGGTTT TGGGTTCGAT GCTTAGATTA 97399 .......... .......... .......... .......... .......... .......... 568 TATCAAAATA TTAAAGCAAG AAATGTATGA ATAGTGATTC TCGGCAGTTT GGTGTCTTAC 97339 .......... .......... .......... .......... .......... .......... 568 CTTCAGGATT ACTCGGCAGT CTCAGGCTAT GATTGATACC ATTTTCTTAC TAAGTGACTG 97279 .......... .......... .......... .......... .......... .......... 568 AAAAAAGGAA ACAAAAAAAT ATTTTTCTTA CGGAGGGGTA AAAATGTTAT CTGGTTCACT 97219 .......... .......... .......... .......... .......... .......... 568 TGCGATGAAA TGCATCTTTT GCTTTCTATA GACCCTATGT CTCCTCAAGA GATAGCATAT 97159 .......... .......... .......... .......... .......... .......... 568 ACGTATTTTG GCCTCTTGGT ATTTTCCTGT AATCAAGGAT CTCTTAGTTG GATAACTCCT 97099 .......... .......... .......... .......... .......... .......... 568 ATTATTAAAA CTGACGTTGA TTCTGGCTTT GGCGTCTCTC CCAGGAATTG GTTAGATTGG 97039 |||||| |||||||||| .......... .......... .......... .......... ....GAATTG GTTAGATTGG 584 ATGAAAAACA TAATGTTTCA GAGACTGAAA GAACTGGATT TCTAGTCAGG ACTATCAACT 96979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAAAACA TAATGTTTCA GAGACTGAAA GAACTGGATT TCTAGTCAGG ACTATCAACT 644 CTCTGAATGC TCTTCGTGA 96960 |||||||||| ||||||||| CTCTGAATGC TCTTCGTGA 663 hqPGS_C09HBa0109D11.1-_SGN-E344684+ (100218 100173,100103 99972,99129 99004,98892 98714,98016 97932,97054 96960) ******************************************************************************** EST sequence 63 -strand 728 n (File: SGN-E390928-) 1 TAATCACATC AAGTCCATGT TCATGGACNT ATTTGGTGCG GGTACTGATA CAACCACAAG 61 CACATTGGAA TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA 121 AGTTGAACTT GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG 181 ACTCCCTTAC TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT 241 CTTAGTTCCG CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG 301 CTCACAGGTA CTAGTTAATG TGTGGGCGAT TGGTCGAGAT TTTACTTTTT GGAAGGATCC 361 TTTAGAGTTT AAACCTGAGA GATTTTTGAA TTTGGATCTG GACATGCGAG GACAAGATTT 421 TGAGTTGATT CCATTTGGTG CTGGACGAAG AATATGCCCT GGGTTGCCAC TAGCATTGAG 481 GATGATTCCA GTAATGTTGG GCTCACTGTT GAATTCATTC AATTGGAAAC TTGATGCAGG 541 TATTGAGCCA CAAGAATTAG ACATGGAGGA GAAGTTTGGT ATTACCTTAG CCAAAGCTCA 601 TCCTTTGCGA GCTATCCCCT CTCCTCTTTG ATCGATGTTG CATTGCCTAG TCGATAAATA 661 TTTATATGTA TTTGATATTT ACGCTGAAGC AAGTATTTTA ATCTAAATAA TCATATAAAA 721 AAAAAAAA Predicted gene structure (within gDNA segment 109013 to 106495): Exon 1 108252 108228 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 108227 108118 ( 110 n); Pd: 0.994 (s: 0), Pa: 0.999 (s: 0.98) Exon 2 108117 107836 ( 282 n); cDNA 26 307 ( 282 n); score: 0.996 Intron 2 107835 107615 ( 221 n); Pd: 0.999 (s: 1.00), Pa: 0.626 (s: 1.00) Exon 3 107614 107206 ( 409 n); cDNA 308 716 ( 409 n); score: 1.000 Intron 3 107205 107158 ( 48 n); Pd: 0.000 (s: 1.00), Pa: 0.983 (s: 0) Exon 4 107157 107146 ( 12 n); cDNA 717 728 ( 12 n); score: 0.667 MATCH C09HBa0109D11.1- SGN-E390928- 0.999 728 1.000 C PGS_C09HBa0109D11.1-_SGN-E390928- (108252 108228,108117 107836,107614 107206,107157 107146) Alignment (genomic DNA sequence = upper lines): TAATCACATC AAGTCCATGT TCATGGTTCG TATTATTTAT CATGAGCTTA TGTTATATTA 108193 |||||||||| |||||||||| ||||| TAATCACATC AAGTCCATGT TCATG..... .......... .......... .......... 25 TTATAATTTA TGAATTTTTT TTATTATTAT TGCAATATAT GGTTATTTAT TTTGATGTAC 108133 .......... .......... .......... .......... .......... .......... 25 AAATTAATGT TATAGGACCT ATTTGGTGCG GGTACTGATA CAACCACAAG CACATTGGAA 108073 ||| | |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GACNT ATTTGGTGCG GGTACTGATA CAACCACAAG CACATTGGAA 70 TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA AGTTGAACTT 108013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA AGTTGAACTT 130 GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG ACTCCCTTAC 107953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG ACTCCCTTAC 190 TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT CTTAGTTCCG 107893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT CTTAGTTCCG 250 CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG CTCACAGGTA 107833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG CTCACAG... 307 TGTATGTGTG GTAAATAAAG TTATTTGACG AAAATAATAT GAATAGTGTA CTAAAGAGGA 107773 .......... .......... .......... .......... .......... .......... 307 CCCAAAAGAA AATTTATAAT TATTTTTTAA AAAAATAAAA TAAATTAAAA TTTGGTTAGA 107713 .......... .......... .......... .......... .......... .......... 307 GTTGGATGGA TTAGGTTTGA CCTGTTGTTT AGTACTGAAT CTTATTGAGC TCTTTTAACC 107653 .......... .......... .......... .......... .......... .......... 307 AATCCAAACA TAAACTAACT CATGTAATTT GAGTCCAGGT ACTAGTTAAT GTGTGGGCGA 107593 || |||||||||| |||||||||| .......... .......... .......... ........GT ACTAGTTAAT GTGTGGGCGA 329 TTGGTCGAGA TTTTACTTTT TGGAAGGATC CTTTAGAGTT TAAACCTGAG AGATTTTTGA 107533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTCGAGA TTTTACTTTT TGGAAGGATC CTTTAGAGTT TAAACCTGAG AGATTTTTGA 389 ATTTGGATCT GGACATGCGA GGACAAGATT TTGAGTTGAT TCCATTTGGT GCTGGACGAA 107473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGATCT GGACATGCGA GGACAAGATT TTGAGTTGAT TCCATTTGGT GCTGGACGAA 449 GAATATGCCC TGGGTTGCCA CTAGCATTGA GGATGATTCC AGTAATGTTG GGCTCACTGT 107413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATATGCCC TGGGTTGCCA CTAGCATTGA GGATGATTCC AGTAATGTTG GGCTCACTGT 509 TGAATTCATT CAATTGGAAA CTTGATGCAG GTATTGAGCC ACAAGAATTA GACATGGAGG 107353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTCATT CAATTGGAAA CTTGATGCAG GTATTGAGCC ACAAGAATTA GACATGGAGG 569 AGAAGTTTGG TATTACCTTA GCCAAAGCTC ATCCTTTGCG AGCTATCCCC TCTCCTCTTT 107293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTTGG TATTACCTTA GCCAAAGCTC ATCCTTTGCG AGCTATCCCC TCTCCTCTTT 629 GATCGATGTT GCATTGCCTA GTCGATAAAT ATTTATATGT ATTTGATATT TACGCTGAAG 107233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGATGTT GCATTGCCTA GTCGATAAAT ATTTATATGT ATTTGATATT TACGCTGAAG 689 CAAGTATTTT AATCTAAATA ATCATATATA TGTATATTGC CTATATATGT TTCTCATGAA 107173 |||||||||| |||||||||| ||||||| CAAGTATTTT AATCTAAATA ATCATAT... .......... .......... .......... 716 TGTTATTTGC TTTAGGCAAA AAGAGAA 107146 ||| || | || .......... .....AAAAA AAAAAAA 728 hqPGS_C09HBa0109D11.1-_SGN-E390928- (108252 108228,108117 107836,107614 107206) ******************************************************************************** EST sequence 62 -strand 626 n (File: SGN-E390927-) 1 GATAATAAAA AAAGCTCAAG TTGAACTGCT GNAAATCATC GGGAAAGGAA AATTAATAGA 61 AGAAGCTGAT GTTNTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 121 GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 181 CTACATCATC CCAAAGGGCT CACAGGTACT AGTTAATGTG TGGGCGATTG GTCGAGATTT 241 TACTTTTTGG AAGGATCCTT TAGAGTTTAA ACCTGAGAGA TTTTTGAATT TGGATCTGGA 301 CATGCGAGGA CAAGATTTTG AGTTGATTCC ATTTGGTGCT GGACGAAGAA TATGCCCTGG 361 GTTGCCACTA GCATTGAGGA TGATTCCAGT AATGTTGGGC TCACTGTTGA ATTCATTCAA 421 TTGGAAACTT GATGCAGGTA TTGAGCCACA AGAATTAGAC ATGGAGGAGA AGTTTGGTAT 481 TACCTTAGCC AAAGCTCATC CTTTGCGAGC TATCCCCTCT CCTCTTTGAT CGATGTTGCA 541 TTGCCTAGTC GATAAATATT TATATGTATT TGATATTTAC GCTGAAGCAA GTATTTTAAT 601 CTAAATAATC ATATAAAAAA AAAAAA Predicted gene structure (within gDNA segment 108650 to 106495): Exon 1 108040 107836 ( 205 n); cDNA 1 205 ( 205 n); score: 0.966 Intron 1 107835 107615 ( 221 n); Pd: 0.999 (s: 1.00), Pa: 0.626 (s: 1.00) Exon 2 107614 107206 ( 409 n); cDNA 206 614 ( 409 n); score: 1.000 Intron 2 107205 107158 ( 48 n); Pd: 0.000 (s: 1.00), Pa: 0.983 (s: 0) Exon 3 107157 107146 ( 12 n); cDNA 615 626 ( 12 n); score: 0.667 MATCH C09HBa0109D11.1- SGN-E390927- 0.989 626 1.000 C PGS_C09HBa0109D11.1-_SGN-E390927- (108040 107836,107614 107206,107157 107146) Alignment (genomic DNA sequence = upper lines): GATAATAAAA AAAGCTCAAG TTGAACTTGC TGAAATCATT GGGAAAGGAA AATTAATAGA 107981 |||||||||| |||||||||| ||||||| ||||||| |||||||||| |||||||||| GATAATAAAA AAAGCTCAAG TTGAACTGCT GNAAATCATC GGGAAAGGAA AATTAATAGA 60 AGAAGCTGAT GTTTTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 107921 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTGAT GTTNTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 120 GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 107861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 180 CTACATCATC CCAAAGGGCT CACAGGTATG TATGTGTGGT AAATAAAGTT ATTTGACGAA 107801 |||||||||| |||||||||| ||||| CTACATCATC CCAAAGGGCT CACAG..... .......... .......... .......... 205 AATAATATGA ATAGTGTACT AAAGAGGACC CAAAAGAAAA TTTATAATTA TTTTTTAAAA 107741 .......... .......... .......... .......... .......... .......... 205 AAATAAAATA AATTAAAATT TGGTTAGAGT TGGATGGATT AGGTTTGACC TGTTGTTTAG 107681 .......... .......... .......... .......... .......... .......... 205 TACTGAATCT TATTGAGCTC TTTTAACCAA TCCAAACATA AACTAACTCA TGTAATTTGA 107621 .......... .......... .......... .......... .......... .......... 205 GTCCAGGTAC TAGTTAATGT GTGGGCGATT GGTCGAGATT TTACTTTTTG GAAGGATCCT 107561 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTAC TAGTTAATGT GTGGGCGATT GGTCGAGATT TTACTTTTTG GAAGGATCCT 259 TTAGAGTTTA AACCTGAGAG ATTTTTGAAT TTGGATCTGG ACATGCGAGG ACAAGATTTT 107501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTTA AACCTGAGAG ATTTTTGAAT TTGGATCTGG ACATGCGAGG ACAAGATTTT 319 GAGTTGATTC CATTTGGTGC TGGACGAAGA ATATGCCCTG GGTTGCCACT AGCATTGAGG 107441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGATTC CATTTGGTGC TGGACGAAGA ATATGCCCTG GGTTGCCACT AGCATTGAGG 379 ATGATTCCAG TAATGTTGGG CTCACTGTTG AATTCATTCA ATTGGAAACT TGATGCAGGT 107381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTCCAG TAATGTTGGG CTCACTGTTG AATTCATTCA ATTGGAAACT TGATGCAGGT 439 ATTGAGCCAC AAGAATTAGA CATGGAGGAG AAGTTTGGTA TTACCTTAGC CAAAGCTCAT 107321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGCCAC AAGAATTAGA CATGGAGGAG AAGTTTGGTA TTACCTTAGC CAAAGCTCAT 499 CCTTTGCGAG CTATCCCCTC TCCTCTTTGA TCGATGTTGC ATTGCCTAGT CGATAAATAT 107261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTGCGAG CTATCCCCTC TCCTCTTTGA TCGATGTTGC ATTGCCTAGT CGATAAATAT 559 TTATATGTAT TTGATATTTA CGCTGAAGCA AGTATTTTAA TCTAAATAAT CATATATATG 107201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTATATGTAT TTGATATTTA CGCTGAAGCA AGTATTTTAA TCTAAATAAT CATAT..... 614 TATATTGCCT ATATATGTTT CTCATGAATG TTATTTGCTT TAGGCAAAAA GAGAA 107146 ||||| | || .......... .......... .......... .......... ...AAAAAAA AAAAA 626 hqPGS_C09HBa0109D11.1-_SGN-E390927- (108040 107836,107614 107206) ******************************************************************************** EST sequence 101 +strand 655 n (File: SGN-E335463+) 1 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 61 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 121 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 181 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 241 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 301 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 361 CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 421 GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 481 AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 541 GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 601 TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT Predicted gene structure (within gDNA segment 109493 to 107629): Exon 1 108893 108239 ( 655 n); cDNA 1 655 ( 655 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E335463+ 1.000 655 1.000 C PGS_C09HBa0109D11.1-_SGN-E335463+ (108893 108239) Alignment (genomic DNA sequence = upper lines): ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 108834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 60 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 108774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 120 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 108714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 180 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 108654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 240 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 108594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 300 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 108534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 360 CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 108474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 420 GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 108414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 480 AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 108354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 540 GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 108294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 600 TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT 108239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT 655 hqPGS_C09HBa0109D11.1-_SGN-E335463+ (108893 108239) ******************************************************************************** EST sequence 88 +strand 577 n (File: SGN-E278924+) 1 TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 61 CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 121 AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 181 TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 241 GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 301 CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 361 TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 421 TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 481 TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 541 CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA Predicted gene structure (within gDNA segment 109449 to 107663): Exon 1 108849 108273 ( 577 n); cDNA 1 577 ( 577 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E278924+ 1.000 577 1.000 C PGS_C09HBa0109D11.1-_SGN-E278924+ (108849 108273) Alignment (genomic DNA sequence = upper lines): TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 108790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 60 CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 108730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 120 AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 108670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 180 TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 108610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 240 GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 108550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 300 CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 108490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 360 TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 108430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 420 TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 108370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 480 TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 108310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 540 CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA 108273 |||||||||| |||||||||| |||||||||| ||||||| CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA 577 hqPGS_C09HBa0109D11.1-_SGN-E278924+ (108849 108273) ******************************************************************************** EST sequence 129 +strand 606 n (File: SGN-E301544+) 1 TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 61 AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 121 CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 181 CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 241 GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 301 TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 361 AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 421 ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 481 TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 541 ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 601 ATTTTG Predicted gene structure (within gDNA segment 109594 to 107779): Exon 1 108994 108389 ( 606 n); cDNA 1 606 ( 606 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E301544+ 1.000 606 1.000 C PGS_C09HBa0109D11.1-_SGN-E301544+ (108994 108389) Alignment (genomic DNA sequence = upper lines): TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 108935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 60 AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 108875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 120 CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 108815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 180 CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 108755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 240 GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 108695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 300 TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 108635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 360 AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 108575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 420 ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 108515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 480 TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 108455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 540 ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 108395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 600 ATTTTG 108389 |||||| ATTTTG 606 hqPGS_C09HBa0109D11.1-_SGN-E301544+ (108994 108389) ******************************************************************************** EST sequence 119 +strand 621 n (File: SGN-E291872+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 181 ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 241 GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 301 TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 361 AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 421 CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 481 TCAAACACAC TTTTCTCCAA AGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 541 AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 601 CCCATACTTG AAAAAATTGA T Predicted gene structure (within gDNA segment 109646 to 107816): Exon 1 109046 108426 ( 621 n); cDNA 1 621 ( 621 n); score: 0.998 MATCH C09HBa0109D11.1- SGN-E291872+ 0.998 621 1.000 C PGS_C09HBa0109D11.1-_SGN-E291872+ (109046 108426) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 108987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 108927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 108867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 180 ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 108807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 240 GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 108747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 300 TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 108687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 360 AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 108627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 420 CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 108567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 480 TCAAACACAC TTTTCTCCAA GGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 108507 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TCAAACACAC TTTTCTCCAA AGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 540 AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 108447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 600 CCCATACTTG AAAAAATTGA T 108426 |||||||||| |||||||||| | CCCATACTTG AAAAAATTGA T 621 hqPGS_C09HBa0109D11.1-_SGN-E291872+ (109046 108426) ******************************************************************************** EST sequence 132 +strand 436 n (File: SGN-E302969+) 1 AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 61 CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 121 GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 181 CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 241 GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 301 TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 361 TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 421 GAAGCCTAAT TTAGTA Predicted gene structure (within gDNA segment 109491 to 107846): Exon 1 108891 108456 ( 436 n); cDNA 1 436 ( 436 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E302969+ 1.000 436 1.000 C PGS_C09HBa0109D11.1-_SGN-E302969+ (108891 108456) Alignment (genomic DNA sequence = upper lines): AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 108832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 60 CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 108772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 120 GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 108712 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 180 CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 108652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 240 GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 108592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 300 TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 108532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 360 TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 108472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 420 GAAGCCTAAT TTAGTA 108456 |||||||||| |||||| GAAGCCTAAT TTAGTA 436 hqPGS_C09HBa0109D11.1-_SGN-E302969+ (108891 108456) ******************************************************************************** EST sequence 128 +strand 574 n (File: SGN-E390674+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 541 TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT Predicted gene structure (within gDNA segment 109648 to 107865): Exon 1 109048 108475 ( 574 n); cDNA 1 574 ( 574 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E390674+ 1.000 574 1.000 C PGS_C09HBa0109D11.1-_SGN-E390674+ (109048 108475) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 108989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 108929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 108869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 108809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 108749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 300 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 108689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 360 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 108629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 420 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 108569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 480 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 108509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 540 TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT 108475 |||||||||| |||||||||| |||||||||| |||| TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT 574 hqPGS_C09HBa0109D11.1-_SGN-E390674+ (109048 108475) ******************************************************************************** EST sequence 117 +strand 578 n (File: SGN-E291937+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 181 CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 241 TTGCTCCTAT TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 301 CCTGTCCTCA ATGGCAAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 361 AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 421 ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 481 TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 541 AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT Predicted gene structure (within gDNA segment 109646 to 107870): Exon 1 109046 108480 ( 567 n); cDNA 1 578 ( 578 n); score: 0.944 MATCH C09HBa0109D11.1- SGN-E291937+ 0.944 567 0.981 C PGS_C09HBa0109D11.1-_SGN-E291937+ (109046 108480) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 108987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 108927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA GTTA-GG--- T----C--AA A-TAACAACA ATAGTCATTT 108878 |||||||||| |||||||||| |||| || | | || | |||||||| |||||||||| GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 180 CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 108818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 240 TTGCTCCTAA TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 108758 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTCCTAT TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 300 TTTGTCCTCA ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 108698 |||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTCCTCA ATGGCAAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 360 AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 108638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 420 ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 108578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 480 TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 108518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 540 AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT 108480 |||||||||| |||||||||| |||||||||| |||||||| AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT 578 hqPGS_C09HBa0109D11.1-_SGN-E291937+ (109046 108480) ******************************************************************************** EST sequence 127 +strand 530 n (File: SGN-E390673+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA Predicted gene structure (within gDNA segment 109648 to 107909): Exon 1 109048 108519 ( 530 n); cDNA 1 530 ( 530 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E390673+ 1.000 530 1.000 C PGS_C09HBa0109D11.1-_SGN-E390673+ (109048 108519) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 108989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 108929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 108869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 108809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 108749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 300 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 108689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 360 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 108629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 420 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 108569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 480 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA 108519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA 530 hqPGS_C09HBa0109D11.1-_SGN-E390673+ (109048 108519) ******************************************************************************** EST sequence 133 +strand 527 n (File: SGN-E302472+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCCCCACCA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 301 TCAATGGCGA ACGCCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 361 ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACCAAT TGATTGATTA TTGTGACAAA 421 TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 481 TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC Predicted gene structure (within gDNA segment 109648 to 107916): Exon 1 109048 108526 ( 523 n); cDNA 1 527 ( 527 n); score: 0.979 MATCH C09HBa0109D11.1- SGN-E302472+ 0.979 523 0.992 C PGS_C09HBa0109D11.1-_SGN-E302472+ (109048 108526) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 108989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 108929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 108869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 108809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AG-CGCA-CA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 108751 |||||||||| || | || || |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCCCCACCA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 300 TCAATGGCGA ACG-CTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 108692 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGGCGA ACGCCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 360 ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAA-CAAT TGATTGATTA TTGTGACAAA 108633 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACCAAT TGATTGATTA TTGTGACAAA 420 TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 108573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 480 TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC 108526 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC 527 hqPGS_C09HBa0109D11.1-_SGN-E302472+ (109048 108526) ******************************************************************************** EST sequence 122 +strand 547 n (File: SGN-E300235+) 1 TTAGTGTTGG CTAATATCAT ACCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 61 GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 121 TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 181 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 241 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 301 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 361 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 421 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 481 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAAGA TTTGGCTGAT 541 CCTTTTT Predicted gene structure (within gDNA segment 109673 to 107917): Exon 1 109073 108527 ( 547 n); cDNA 1 547 ( 547 n); score: 0.996 MATCH C09HBa0109D11.1- SGN-E300235+ 0.996 547 1.000 C PGS_C09HBa0109D11.1-_SGN-E300235+ (109073 108527) Alignment (genomic DNA sequence = upper lines): TTAGTGTTGG CTAATATCAT AGCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 109014 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTAGTGTTGG CTAATATCAT ACCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 60 GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 108954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 120 TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 108894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 180 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 108834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 240 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 108774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 300 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 108714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 360 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 108654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 420 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 108594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 480 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 108534 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAAGA TTTGGCTGAT 540 CCTTTTT 108527 ||||||| CCTTTTT 547 hqPGS_C09HBa0109D11.1-_SGN-E300235+ (109073 108527) ******************************************************************************** EST sequence 87 +strand 553 n (File: SGN-E305501+) 1 GATTACTATT CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 61 TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 121 CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 181 CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 241 GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 301 CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 361 CGAACGCTTC TAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 421 CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCGA 481 CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 541 AACACACTTT TCT Predicted gene structure (within gDNA segment 109793 to 107941): Exon 1 109103 108551 ( 553 n); cDNA 1 553 ( 553 n); score: 0.995 MATCH C09HBa0109D11.1- SGN-E305501+ 0.995 553 1.000 C PGS_C09HBa0109D11.1-_SGN-E305501+ (109103 108551) Alignment (genomic DNA sequence = upper lines): GATTACTATA CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 109044 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTACTATT CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 60 TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 108984 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 120 CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 108924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 180 CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 108864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 240 GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 108804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 300 CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 108744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 360 CGAACGCTTC GAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 108684 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACGCTTC TAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 420 CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCAA 108624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCGA 480 CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 108564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 540 AACACACTTT TCT 108551 |||||||||| ||| AACACACTTT TCT 553 hqPGS_C09HBa0109D11.1-_SGN-E305501+ (109103 108551) ******************************************************************************** EST sequence 66 +strand 449 n (File: SGN-E294327+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 109647 to 107989): Exon 1 109047 108599 ( 449 n); cDNA 1 449 ( 449 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E294327+ 1.000 449 1.000 C PGS_C09HBa0109D11.1-_SGN-E294327+ (109047 108599) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 108988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 108928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 108868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 108808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 240 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 108748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 300 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 108688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 360 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 108628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 420 TCAACAAGGT GAAGCTTTGG ATATAGGTC 108599 |||||||||| |||||||||| ||||||||| TCAACAAGGT GAAGCTTTGG ATATAGGTC 449 hqPGS_C09HBa0109D11.1-_SGN-E294327+ (109047 108599) ******************************************************************************** EST sequence 67 +strand 449 n (File: SGN-E294328+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 109647 to 107989): Exon 1 109047 108599 ( 449 n); cDNA 1 449 ( 449 n); score: 1.000 MATCH C09HBa0109D11.1- SGN-E294328+ 1.000 449 1.000 C PGS_C09HBa0109D11.1-_SGN-E294328+ (109047 108599) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 108988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 108928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 108868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 108808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 240 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 108748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 300 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 108688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 360 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 108628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 420 TCAACAAGGT GAAGCTTTGG ATATAGGTC 108599 |||||||||| |||||||||| ||||||||| TCAACAAGGT GAAGCTTTGG ATATAGGTC 449 hqPGS_C09HBa0109D11.1-_SGN-E294328+ (109047 108599) ******************************************************************************** EST sequence 71 +strand 398 n (File: SGN-E310265+) 1 CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 61 AAATATGTAT CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 121 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 181 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 241 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 301 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 361 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC Predicted gene structure (within gDNA segment 109708 to 108101): Exon 1 109108 108711 ( 398 n); cDNA 1 398 ( 398 n); score: 0.997 MATCH C09HBa0109D11.1- SGN-E310265+ 0.997 398 1.000 C PGS_C09HBa0109D11.1-_SGN-E310265+ (109108 108711) Alignment (genomic DNA sequence = upper lines): CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 109049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 60 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 108989 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAT CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 120 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 108929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 180 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 108869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 240 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 108809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 300 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 108749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 360 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC 108711 |||||||||| |||||||||| |||||||||| |||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC 398 hqPGS_C09HBa0109D11.1-_SGN-E310265+ (109108 108711) ******************************************************************************** EST sequence 113 -strand 283 n (File: SGN-E309339-) 1 TGAGCTTTGA TTAAAGCCAA ACCAAATTTT TCCTCCATGT CTAGGTCTTC TGGTCTAATG 61 CCTGCCTCGA GTTTCCAATT GAAGGAATTC AAGAGTGAGC CCAACATGAC TGGAATCATT 121 CGCAATGCAA GTGGCAAGGC AGGGCACATT CTTCTACCCG CACCAAATGG GATCAGTTCA 181 AAATCTTGTC CTCGCACGTA TAAATTTGAA TGCCAAAACC TCTCAGGCTT AAACATTAAG 241 GGATCCTCCC AAAAAGTAGA ATCTCTATTA ATTTCCCACA CAT Predicted gene structure (within gDNA segment 112409 to 114000): Exon 1 113118 113400 ( 283 n); cDNA 1 283 ( 283 n); score: 0.982 MATCH C09HBa0109D11.1+ SGN-E309339- 0.982 283 1.000 C PGS_C09HBa0109D11.1+_SGN-E309339- (113118 113400) Alignment (genomic DNA sequence = upper lines): TGAGCTTTGA CTAAAGCCAA ACCAAATTTC TCCTCCATGT CTAGGTCTTC TGGTCTAATG 113177 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGAGCTTTGA TTAAAGCCAA ACCAAATTTT TCCTCCATGT CTAGGTCTTC TGGTCTAATG 60 CCTGCCTCGA GTTTCCAATT GAAGGAATTC AAGAGTGAGC CCAACATGAC TGGAATCATT 113237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCCTCGA GTTTCCAATT GAAGGAATTC AAGAGTGAGC CCAACATGAC TGGAATCATT 120 CGCAATGCAA GTGGCAAGGC AGGGCACATT CTTCTACCCG CACCAAATGG GATCAGTTCA 113297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAATGCAA GTGGCAAGGC AGGGCACATT CTTCTACCCG CACCAAATGG GATCAGTTCA 180 AAATCTTGTC CTCGCACGTC TAAATTTGAA TGCCAAAACC TCTCAGGTTT AAACACTAAG 113357 |||||||||| ||||||||| |||||||||| |||||||||| ||||||| || ||||| |||| AAATCTTGTC CTCGCACGTA TAAATTTGAA TGCCAAAACC TCTCAGGCTT AAACATTAAG 240 GGATCCTCCC AAAAAGTAGA ATCTCTATTA ATTTCCCACA CAT 113400 |||||||||| |||||||||| |||||||||| |||||||||| ||| GGATCCTCCC AAAAAGTAGA ATCTCTATTA ATTTCCCACA CAT 283 hqPGS_C09HBa0109D11.1+_SGN-E309339- (113118 113400) Total number of EST alignments reported: 132 ________________________________________________________________________________ Predicted gene locations (19) in segment 1 to 114526: PGL 1 (+ strand): 1146 3688 AGS-1 (1146 1369,1774 1823,2058 2125,2522 2584,2777 2880,3415 3688) SCR (e 1.000 d 0.999 a 0.999,e 1.000 d 0.843 a 0.989,e 1.000 d 0.991 a 0.947,e 1.000 d 1.000 a 1.000,e 1.000 d 0.969 a 0.982,e 0.953) Exon 1 1146 1369 ( 224 n); score: 1.000 Intron 1 1370 1773 ( 404 n); Pd: 0.999 Pa: 0.999 Exon 2 1774 1823 ( 50 n); score: 1.000 Intron 2 1824 2057 ( 234 n); Pd: 0.843 Pa: 0.989 Exon 3 2058 2125 ( 68 n); score: 1.000 Intron 3 2126 2521 ( 396 n); Pd: 0.991 Pa: 0.947 Exon 4 2522 2584 ( 63 n); score: 1.000 Intron 4 2585 2776 ( 192 n); Pd: 1.000 Pa: 1.000 Exon 5 2777 2880 ( 104 n); score: 1.000 Intron 5 2881 3414 ( 534 n); Pd: 0.969 Pa: 0.982 Exon 6 3415 3688 ( 274 n); score: 0.953 PGS (1146 1369,1774 1823,2058 2125,2522 2584,2777 2880,3415 3688) SGN-E213196+ 3-phase translation of AGS-1 (+strand): . . . . . . 1146 TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAA Y M R A I S E L F L V K I F P F V R N K I - E L F L N Y F - - K S S H L L E I K Y E S Y F - T I F S E N L P I C - K - . . . . . . 1206 AAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAAT K V S R K P I F F P I R N I N M S E S N K F Q E S L F F F L L E I L I C L N Q I K S F K K A Y F F S Y - K Y - Y V - I K . . . . . . 1266 CAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCT Q Y D S C F D R P R L V I K K V L A K P N M I L V L I D Q D W L L R K F W L N L S I - F L F - - T K I G Y - E S F G - T . . . . . : . 1326 CAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG : GCATGAATTGAGGAAT Q S E G N G A V V R R S I G R : H E L R N K V K G M E L L L E E A L E : G M N - G I S K - R E W S C C - K K H W K : A - I E E . . . . : . . 1790 CTTGATCCTTTCCTAATGTTGGATGAATTTTCAG : TTTCTGCTCCTGCTGGTTTTCCTGAT L D P F L M L D E F S : V S A P A G F P D L I L S - C W M N F Q : F L L L L V F L I S - S F P N V G - I F S : F C S C W F S - . . . . . : . 2084 CATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG : GGAGCTTTTACTCATCAA H P H R G F E T V T Y M L Q : G A F T H Q I H T E V L R Q - L T C Y R : E L L L I K S S T Q R F - D S N L H A T : G S F Y S S . . . . . : . 2540 GATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG : TGGATGACAGCAGGA D F A G H K G T I N T G D V Q : W M T A G I L L V T R A Q L I L V M C S : G - Q Q E R F C W S Q G H N - Y W - C A : V D D S R . . . . . . 2792 AGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTT R G I I H S E M P A G E G S Q K G L Q L E V - F I Q K C L Q E K A V K R G C N F K R Y N S F R N A C R R R Q S K G V A T . . . : . . . 2852 TGGATAAATCTCTCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAACTGCTGAAA W I N L S S K D K M : I E P R Y Q E L L K G - I S L L R T K : - L S Q G I K N C - K L D K S L F - G Q N : D - A K V S R T A E . . . . . . 3446 GAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCA E D I P R A E N D G V K V K V I A G E A K T Y Q E Q R M M V L K - K L - Q V K Q R R H T K S R E - W C - S K S Y S R - S . . . . . . 3506 ATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTA M G V Q S P V Y T Q T P T M Y L D F T L W E S N P R F T H K R L Q C T S I S P Y N G S P I P G L H T N A Y N V P R F H P . . . . . . 3566 CAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATA Q P T A Y Y H Q A I P E S W N A F V Y I N Q Q L T I I K P S L N L G T P S Y I - T T N S L L S S S H P - I L E R L R I Y . . . . . . 3626 GTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGC V E G E G V F G I P S S G P V S A H H C L K E K V S S E F R V Q V L Y Q L T I A S - R R R C L R N S E F R S C I S S P L . 3686 TTG L L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-1_AGS-1_PPS_1 (1146 1369,1774 1823,2058 2125,2522 2584,2777 2880,3415 3688) (frame '1'; 783 bp, 261 residues) 1 YMRAISELFL VKIFPFVRNK KVSRKPIFFP IRNINMSESN QYDSCFDRPR LVIKKVLAKP 61 QSEGNGAVVR RSIGRHELRN LDPFLMLDEF SVSAPAGFPD HPHRGFETVT YMLQGAFTHQ 121 DFAGHKGTIN TGDVQWMTAG RGIIHSEMPA GEGSQKGLQL WINLSSKDKM IEPRYQELLK 181 EDIPRAENDG VKVKVIAGEA MGVQSPVYTQ TPTMYLDFTL QPTAYYHQAI PESWNAFVYI 241 VEGEGVFGIP SSGPVSAHHC L PGL 2 (- strand): 8806 5500 AGS-1 (8806 8387,5787 5500) SCR (e 1.000 d 0.993 a 0.992,e 1.000) Exon 1 8806 8387 ( 420 n); score: 1.000 Intron 1 8386 5788 (2599 n); Pd: 0.993 Pa: 0.992 Exon 2 5787 5500 ( 288 n); score: 1.000 PGS (8770 8387,5787 5500) SGN-E344534+ PGS (8761 8387,5787 5502) SGN-E348365+ PGS (8801 8387,5787 5665) SGN-E205434+ PGS (8802 8387,5787 5709) SGN-E204292+ PGS (8761 8387,5787 5728) SGN-E311658+ PGS (8802 8465) SGN-E375387+ PGS (8806 8513) SGN-E206630+ PGS (8774 8587) SGN-E261008+ 3-phase translation of AGS-1 (-strand): . . . . . . 8806 ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAAC T P S P L S L S L D H Q F A F F L S L N P L P P S L S L - I T S L H S F S L - T P F P P L S L S R S P V C I L S L S K . . . . . . 8746 CTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATC L K K F Q F F S K W T L Q M M R V R S I S K S F N F S A N G L F R - - G - G V S P Q K V S I F Q Q M D S S D D E G E E Y . . . . . . 8686 TTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTT F S R L - S L V I L Q - V N L I C L H V F Q D C N H W - F C S R - I - F A Y T L L F K I V I I G D S A V G K S N L L T R . . . . . . 8626 ATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCC M Q E M S L I C I Q K Q L L E L S F R P C K K - V - F A F K S N Y W S - V S D P Y A R N E F N L H S K A T I G V E F Q T . . . . . . 8566 AAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAG K L L K L M E K K L K L R F G I L L D K N S - N - W K R S - S S D L G Y C W T R Q T L E I D G K E V K A Q I W D T A G Q . . . . . . 8506 AAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTT K G L E L - L L L I I V V L L V L L L F K V - S C D F C L L S W C F W C S C C L E R F R A V T S A Y Y R G A F G A L V V . . . . . . : 8446 ATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA : M I F Q E G Q L L I V S L V G L M N S K : - Y F K K D N F - - Y P S L A - - T Q N : Y D I S R R T T F D S I P R W L D E L K : . . . . . . 5787 CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATA L I R I Q R L Q G Y W W E T N V T W R I S F G Y N G C K D T G G K Q M - L G E Y T H S D T T V A R I L V G N K C D L E N . . . . . . 5727 TAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCA - E L - A - K K A K A W Q N Q K G C S S K S C E R R R R Q K P G R I R R D V L H I R A V S V E E G K S L A E S E G M F F . . . . . . 5667 TGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAG W R H L P S I Q Q T - T R L S R L - F E G D I C P R F N K R E Q G F R D C D S R M E T S A L D S T N V N K A F E I V I R . . . . . . 5607 AGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTAT R S I I V L A E R F - I P I L I K P N Y D L - - C - Q K G F E F R F L - S R I I E I Y N S V S R K V L N S D S Y K A E L . . . . . 5547 CTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAAC L S T E S T W S T M V P M D R N C Q Q S Q P G Q R W Y R W I E S V N R V N L V N D G T D G S K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-2_AGS-1_PPS_1 (8804 8387,5787 5501) (frame '0'; 705 bp, 235 residues) 1 PFPPLSLSRS PVCILSLSKP QKVSIFQQMD SSDDEGEEYL FKIVIIGDSA VGKSNLLTRY 61 ARNEFNLHSK ATIGVEFQTQ TLEIDGKEVK AQIWDTAGQE RFRAVTSAYY RGAFGALVVY 121 DISRRTTFDS IPRWLDELKT HSDTTVARIL VGNKCDLENI RAVSVEEGKS LAESEGMFFM 181 ETSALDSTNV NKAFEIVIRE IYNSVSRKVL NSDSYKAELS VNRVNLVNDG TDGSK PGL 3 (- strand): 12007 10383 AGS-1 (12007 11924,11729 11680,11589 11522,11337 11275,11069 10966,10656 10383) SCR (e 0.905 d 1.000 a 0.993,e 0.800 d 0.987 a 1.000,e 0.838 d 0.999 a 0.997,e 0.937 d 0.999 a 1.000,e 0.913 d 0.985 a 0.999,e 0.710) Exon 1 12007 11924 ( 84 n); score: 0.905 Intron 1 11923 11730 ( 194 n); Pd: 1.000 Pa: 0.993 Exon 2 11729 11680 ( 50 n); score: 0.800 Intron 2 11679 11590 ( 90 n); Pd: 0.987 Pa: 1.000 Exon 3 11589 11522 ( 68 n); score: 0.838 Intron 3 11521 11338 ( 184 n); Pd: 0.999 Pa: 0.997 Exon 4 11337 11275 ( 63 n); score: 0.937 Intron 4 11274 11070 ( 205 n); Pd: 0.999 Pa: 1.000 Exon 5 11069 10966 ( 104 n); score: 0.913 Intron 5 10965 10657 ( 309 n); Pd: 0.985 Pa: 0.999 Exon 6 10656 10383 ( 274 n); score: 0.710 PGS (12007 11924,11729 11680,11589 11522,11337 11275,11069 10966,10656 10383) SGN-E213196+ 3-phase translation of AGS-1 (-strand): . . . . . . 12007 TAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGC - T K I G C - E S F G - S S K - R - W C R P R L V V K K V L A R A Q N E G D G A D Q D W L L R K F W L E L K M K V M V . . . : . . . 11947 TATTGTTAGAAGAAGCATTGGAAG : GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTT Y C - K K H W K : A - I A E S - S I P H V I V R R S I G R : P E L Q N L D P F L M L L L L E E A L E : G L N C R I L I H S S C . . : . . . . 11693 AGATGAGTTTAGTG : TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGA R - V - C : F T T C W I S - P S T Q R F - D E F S : V S Q P A G F P D H P H R G F E - M S L V : F H N L L D F L T I H T E V L . . . : . . . 11543 GACTGTCACTTATATGTTGCAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGG D C H L Y V A : G S F Y S S R F C W S Q G T V T Y M L Q : G A F T H Q D F A G H K G R L S L I C C R : E L L L I K I L L V T R . . . : . . . 11299 TACAATCAGGACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGA Y N Q D W - C A : V D D S R K R Y S S F R T I R T G D V Q : W M T A G R G I V H S E V Q S G L V M C S : G - Q Q E E V - F I Q . . . . . . 11034 AATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAA N A C W T R Y S K G V A A L D K F I F - M P A G P G T Q K G L Q L W I N L S S K K C L L D Q V L K R G C S F G - I Y L L . : . . . . . 10974 GGACAAAAT : GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGA G Q N : D - A K V S R I A T P R H T K G - D K M : I E P R Y Q E L L H Q D I P K A E R T K : - L S Q G I K N C Y T K T Y Q R L . . . . . . 10605 AAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGT K R W C F G Y Y F S R G I H G E K I T S K D G V S V T I L A G E S M G K K S Q V K K M V F R L L F - Q G N P W G K N H K . . . . . . 10545 TTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCA F H A N A Y N V P - F H P K T R F - A S F T R T P T M Y L D F T L K P G S E H H F S R E R L Q C T L I S P - N Q V L S I . . . . . . 10485 TCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTT S T D P R D L E C L P L H S - R R G S V Q P I P E T W N A F L Y I V E G E G A F I N R S P R P G M P S S T - L K E R E R . . . . . 10425 TGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTG W F F G F N H Y T S S P L L G S S D S T T T P A H H C L L V L R I Q P L H Q L T I A Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-3_AGS-1_PPS_1 (12006 11924,11729 11680,11589 11522,11337 11275,11069 10966,10656 10383) (frame '2'; 642 bp, 214 residues) 1 RPRLVVKKVL ARAQNEGDGA IVRRSIGRPE LQNLDPFLML DEFSVSQPAG FPDHPHRGFE 61 TVTYMLQGAF THQDFAGHKG TIRTGDVQWM TAGRGIVHSE MPAGPGTQKG LQLWINLSSK 121 DKMIEPRYQE LLHQDIPKAE KDGVSVTILA GESMGKKSQV FTRTPTMYLD FTLKPGSEHH 181 QPIPETWNAF LYIVEGEGAF GSSDSTTTPA HHCL PGL 4 (+ strand): 13817 16817 AGS-1 (13817 14228,15599 15807) SCR (e 1.000 d 0.986 a 0.956,e 0.995) Exon 1 13817 14228 ( 412 n); score: 1.000 Intron 1 14229 15598 (1370 n); Pd: 0.986 Pa: 0.956 Exon 2 15599 15807 ( 209 n); score: 0.995 PGS (13817 14228) SGN-E341315+ PGS (13844 14228,15599 15807) SGN-E275986+ PGS (13844 14228,15599 15804) SGN-E276087+ PGS (13844 14141) SGN-E228220+ PGS (13852 14228,15599 15693) SGN-E285333+ 3-phase translation of AGS-1 (+strand): . . . . . . 13817 TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAA F N Q Q S Q K I L - T K K I N F F S - K S I N N P K K F S K L K R S I F F L E K Q S T I P K N S L N - K D Q F F F L K . . . . . . 13877 ATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAA I S M A K K A V L I G I N Y P G T K A E F Q W R K K Q Y - L E S I I Q E Q K Q N N F N G E K S S I N W N Q L S R N K S R . . . . . . 13937 CTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGA L R G C I N D V K R M Y N C L L N R Y G L E V V L T M L S E C T I V Y L I V T D T - R L Y - R C - A N V Q L F T - S L R . . . . . . 13997 TTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACT F A E E D I T V L I D T D D S Y T Q P T L L R K T L L F L - I L M I L T H N Q L I C - G R H Y C S Y R Y - - F L H T T N . . . . . . 14057 GGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGT G R N I R K A L S D L V G S A E S G D C V G I Y V K L Y R I L L D L L N Q G I V W S E Y T - S F I G S C W I C - I R G L . . . . . . 14117 TTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGAT L F V H Y S G H G T R L P A E T G E E D C L C I T V D M E L G Y L L K R V K K M F V C A L Q W T W N - V T C - N G - R R . . . . . . : 14177 GATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGAT D T G F D E C I V P C D M N L I T : D D D I L V L M S V L F L V I - I L L Q : M M I - Y W F - - V Y C S L - Y E S Y Y R : - - . . . . . . 15607 TTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCA F R E L V D K V P E G C Q I T I V S D S L E S S L T K F L K V A R S Q L Y L T H F - R A R - Q S S - R L P D H N C I - L . . . . . . 15667 TGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAA C H S G G L I D K A K E Q I G E S H K Q A T V V A S L T K L K S R - G R A T S K M P Q W W P H - Q S - R A D R G E P Q A . . . . . . 15727 GGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAAT G D D D E G H G S G F G F K N F L R R N V M T M K A M D L V L D S R I S Y V E M R - - R - R P W I W F W I Q E F L T S K . . . 15787 GTTGAAGATGCATTTGAATCC V E D A F E S L K M H L N C - R C I - I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-4_AGS-1_PPS_1 (13874 14228,15599 15807) (frame '1'; 564 bp, 188 residues) 1 KISMAKKAVL IGINYPGTKA ELRGCINDVK RMYNCLLNRY GFAEEDITVL IDTDDSYTQP 61 TGRNIRKALS DLVGSAESGD CLFVHYSGHG TRLPAETGEE DDTGFDECIV PCDMNLITDD 121 DFRELVDKVP EGCQITIVSD SCHSGGLIDK AKEQIGESHK QGDDDEGHGS GFGFKNFLRR 181 NVEDAFES AGS-2 (15818 16817) SCR (e 0.996) Exon 1 15818 16817 (1000 n); score: 0.996 PGS (15818 16519) SGN-E341713+ PGS (15837 16356) SGN-E329560+ PGS (16136 16577) SGN-E236344+ PGS (16157 16797) SGN-E371712- PGS (16249 16745) SGN-E288843- PGS (16274 16817) SGN-E273465- PGS (16329 16736) SGN-E222019- PGS (16329 16734) SGN-E221447- 3-phase translation of AGS-2 (+strand): . . . . . . 15818 ACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTG T F Q V A T I A V R K K R R I L L R V V P S R S P P S P - G R R G E F C - E - C L P G R H H R R E E E E E N F A E S S . . . . . . 15878 TGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCA - L R R K T V I K F M - R A S P C L F P D - D G R R - S S S C E E Q V L A S F H V I E T E D G D Q V H V K S K S L P L S . . . . . . 15938 CTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTA L S S R Y L S R K L V R M I L M L G N L S H R D T - A E N W - G - Y - C W E T - T L I E I L K Q K T G K D D I D V G K L . . . . . . 15998 GGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGA G Q H S L T S L A K M Q V L R - R N S - A N T L - R L W R R C K S - G E E I H E R P T L F D V F G E D A S P K V K K F M . . . . . . 16058 AAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGG K S F L T S Y K R I T S R V E A A G S W N H F - Q A T K E - R A G W R R R V H G K I I F N K L Q K N N E Q G G G G G F M . . . . . . 16118 GTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGA V W L V T W L K S F - N R N L M K M M R Y G W - L G S R V S E T E T - - K - - E G M V G N L A Q E F L K Q K L D E N D E . . . . . . 16178 GCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTT A M Q N R P W K H T L K V N R R F M P V L C K T G H G N T R - R - T G G L C R F S Y A K P A M E T H V E G K Q E V Y A G . . . . . . 16238 CAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAA Q V I E V F Q T V A F S S V G A K Q T K R - - R S S R Q W H S R Q W V P N R P N S G N R G L P D S G I L V S G C Q T D Q . . . . . . 16298 CATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTC H L R M Q P L Q A E S L M V L - A T Q F I C G C N P C R R R V L W C S K Q R N S T S A D A T P A G G E S Y G A L S N A I . . . . . . 16358 AGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTA R K S W P N Q M V Q S P M R S L L A R L G N P G R I R W S S H Q - G A C - Q G - Q E I L A E S D G P V T N E E L V S K A . . . . . . 16418 GGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATC G K R C R N K A S H N A Q A S T A M I I E K D A E T R L H T T P R P L L R - S S R K K M Q K Q G F T Q R P G L Y C D D H . . . . . . 16478 ACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTG T L M L L L F V D S T V L C L L E - L L R - C S F C L L I L L C Y A F S S S C - H V D A P F V C - F Y C A M P S R V A V . . . . . . 16538 AAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTG K Y D C E V N E V L Y S Y I L L C I C V N T T V K S T R C Y I A T S F C V F V - E I R L - S Q R G V I - L H P F V Y L C . . . . . . 16598 ATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTC I V C A N V G V A L L L W C F S R T M L L F V L M L E - L F Y S G V S V E P C S D C L C - C W S S S F T L V F Q - N H A . . . . . . 16658 CATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAAT H H V N V Y Y L A L F F F F - I W S E N I M - M C T I W L F F F S F K F G Q R I P S C E C V L F G S F F F L L N L V R E . . . . . . 16718 AAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGA K V L K N H S F R Y C L G Y L K V K S G R Y - R T T V F G I V - D I - K L N L E - G I K E P Q F S V L F R I F E S - I W . . . . 16778 GAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAA E L V C I L N E L Y F N A N L F V Y - M S Y I L M Q R T C L Y T E - V I F - C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-4_AGS-2_PPS_1 (15820 16503) (frame '0'; 681 bp, 227 residues) 1 LPGRHHRREE EEENFAESSV IETEDGDQVH VKSKSLPLST LIEILKQKTG KDDIDVGKLR 61 PTLFDVFGED ASPKVKKFMK IIFNKLQKNN EQGGGGGFMG MVGNLAQEFL KQKLDENDES 121 YAKPAMETHV EGKQEVYAGS GNRGLPDSGI LVSGCQTDQT SADATPAGGE SYGALSNAIQ 181 EILAESDGPV TNEELVSKAR KKMQKQGFTQ RPGLYCDDHH VDAPFVC- 3-phase translation of AGS-2 (-strand): . . . . . . 16817 TTGCATTAAAATATAACTCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAAT L H - N I T H S V Y K Q V L Q I - L S N C I K I - L I Q Y T N K F S R F N F Q I A L K Y N S F S I Q T S S P D L T F K . . . . . . 16757 ATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAA I L N N T E N C G S L I P Y S L T K F K S - T I P K T V V L - Y L I L - P N L K Y P K Q Y R K L W F F N T L F S D Q I - . . . . . . 16697 AGAAAAAAAAAAGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAAC R K K K E P N S T H S H D G A W F Y - N E K K K S Q I V H I H M M E H G S T E T K K K K R A K - Y T F T - W S M V L L K . . . . . . 16637 ACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGA T R V K E L L Q H - H K Q S H K Y T K G P E - K S Y S N I S T N N H T N T Q K D H Q S K R A T P T L A Q T I T Q I H K R . . . . . . 16577 TGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGC C S Y I T P R - L H S R I S T A T R E G V A I - H L V D F T V V F Q Q L L E K A M - L Y N T S L T S Q S Y F N S Y S R R . . . . . . 16517 ATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGG I A Q - N Q Q T K G A S T - - S S Q - R - H S R I N K Q K E H Q R D D H R S R G H S T V E S T N K R S I N V M I I A V E . . . . . . 16457 CCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCC P G R C V K P C F C I F F L A L L T S S L G V V - S L V S A S F S - P C - Q A P A W A L C E A L F L H L F P S L A N K L . . . . . . 16397 TCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCA S L V T G P S D S A R I S - I A L L R A H W - L D H L I R P G F P E L R C L E H L I G D W T I - F G Q D F L N C V A - S . . . . . . 16337 CCATAAGACTCTCCGCCTGCAGGGGTTGCATCCGCAGATGTTTGGTCTGTTTGGCACCCA P - D S P P A G V A S A D V W S V W H P H K T L R L Q G L H P Q M F G L F G T H T I R L S A C R G C I R R C L V C L A P . . . . . . 16277 CTGACGAGAATGCCACTGTCTGGAAGACCTCTATTACCTGAACCGGCATAAACCTCCTGT L T R M P L S G R P L L P E P A - T S C - R E C H C L E D L Y Y L N R H K P P V T D E N A T V W K T S I T - T G I N L L . . . . . . 16217 TTACCTTCAACGTGTGTTTCCATGGCCGGTTTTGCATAGCTCTCATCATTTTCATCAAGT L P S T C V S M A G F A - L S S F S S S Y L Q R V F P W P V L H S S H H F H Q V F T F N V C F H G R F C I A L I I F I K . . . . . . 16157 TTCTGTTTCAGAAACTCTTGAGCCAAGTTACCAACCATACCCATGAACCCGCCGCCTCCA F C F R N S - A K L P T I P M N P P P P S V S E T L E P S Y Q P Y P - T R R L H F L F Q K L L S Q V T N H T H E P A A S . . . . . . 16097 CCCTGCTCGTTATTCTTTTGTAGCTTGTTAAAAATGATTTTCATGAATTTCTTCACCTTA P C S L F F C S L L K M I F M N F F T L P A R Y S F V A C - K - F S - I S S P - T L L V I L L - L V K N D F H E F L H L . . . . . . 16037 GGACTTGCATCTTCGCCAAAGACGTCAAAGAGTGTTGGCCTAAGTTTCCCAACATCAATA G L A S S P K T S K S V G L S F P T S I D L H L R Q R R Q R V L A - V S Q H Q Y R T C I F A K D V K E C W P K F P N I N . . . . . . 15977 TCATCCTTACCAGTTTTCTGCTTAAGTATCTCGATGAGAGTGGAAAGAGGCAAGGACTTG S S L P V F C L S I S M R V E R G K D L H P Y Q F S A - V S R - E W K E A R T C I I L T S F L L K Y L D E S G K R Q G L . . . . . . 15917 CTCTTCACATGAACTTGATCACCGTCTTCCGTCTCAATCACACTACTCTCAGCAAAATTC L F T - T - S P S S V S I T L L S A K F S S H E L D H R L P S Q S H Y S Q Q N S A L H M N L I T V F R L N H T T L S K I . . . . 15857 TCCTCTTCTTCCTCACGGCGATGGTGGCGACCTGGAAGGT S S S S S R R W W R P G R P L L P H G D G G D L E G L L F F L T A M V A T W K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-4_AGS-2_PPS_1 (16074 15820) (frame '0'; 255 bp, 85 residues) 1 LVKNDFHEFL HLRTCIFAKD VKECWPKFPN INIILTSFLL KYLDESGKRQ GLALHMNLIT 61 VFRLNHTTLS KILLFFLTAM VATWK >C09HBa0109D11.1-_PGL-4_AGS-2_PPS_2 (16136 15906) (frame '1'; 228 bp, 76 residues) 1 AKLPTIPMNP PPPPCSLFFC SLLKMIFMNF FTLGLASSPK TSKSVGLSFP TSISSLPVFC 61 LSISMRVERG KDLLFT- >C09HBa0109D11.1-_PGL-4_AGS-2_PPS_3 (16572 16375) (frame '0'; 195 bp, 65 residues) 1 LYNTSLTSQS YFNSYSRRHS TVESTNKRSI NVMIIAVEAW ALCEALFLHL FPSLANKLLI 61 GDWTI- PGL 5 (- strand): 20155 16386 AGS-1 (16800 16386) SCR (e 0.978) Exon 1 16800 16386 ( 415 n); score: 0.978 PGS (16800 16386) SGN-E222748+ PGS (16797 16386) SGN-E223125+ 3-phase translation of AGS-1 (-strand): . . . . . . 16800 TCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGA S F S I Q T S S P D L T F K Y P K Q Y R H S V Y K Q V L Q I - L S N I L N N T E I Q Y T N K F S R F N F Q I S - T I P . . . . . . 16740 AAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGAAAAAAAAAAGAGCC K L W F F N T L F S D Q I - K K K K R A N C G S L I P Y S L T K F K R K K K E P K T V V L - Y L I L - P N L K E K K K S . . . . . . 16680 AAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCT K - Y T F T - W S M V L L K H Q S K R A N S T H S H D G A W F Y - N T R V K E L Q I V H I H M M E H G S T E T P E - K S . . . . . . 16620 ACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACC T P T L A Q T I T Q I H K R M - L Y N T L Q H - H K Q S H K Y T K G C S Y I T P Y S N I S T N N H T N T Q K D V A I - H . . . . . . 16560 TCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCA S L T S Q S Y F N S Y S R R H S T V E S R - L H S R I S T A T R E G I A Q - N Q L V D F T V V F Q Q L L E K A - H S R I . . . . . . 16500 ACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAA T N K R S I N V M I I A V E A W A L C E Q T K G A S T - - S S Q - R P G R C V K N K Q K E H Q R D D H R S R G L G V V - . . . . . . 16440 GCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACT A L F L H L F P S L A N K L L I G D P C F C I F F L A L L T S S S L V T S L V S A S F S - P C - Q A P H W - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 16386 AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCAC S H Q - G A C - Q G - E K D A E T R L H V T N E E L V S K A R K K M Q K Q G F T S P M R S L L A R L G K R C R N K A S . . . . . . 16446 ACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATT T T P R P L L R - S S R - C S F C L L I Q R P G L Y C D D H H V D A P F V C - F H N A Q A S T A M I I T L M L L L F V D . . . . . . 16506 CTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGT L L C Y A F S S S C - N T T V K S T R C Y C A M P S R V A V E I R L - S Q R G V S T V L C L L E - L L K Y D C E V N E V . . . . . . 16566 TATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTC Y I A T S F C V F V - L F V L M L E - L I - L H P F V Y L C D C L C - C W S S S L Y S Y I L L C I C V I V C A N V G V A . . . . . . 16626 TTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC F Y S G V S V E P C S I M - M C T I W L F T L V F Q - N H A P S C E C V L F G S L L L W C F S R T M L H H V N V Y Y L A . . . . . . 16686 TTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGT F F F S F K F G Q R I R Y - R T T V F G F F F L L N L V R E - G I K E P Q F S V L F F F F - I W S E N K V L K N H S F R . . . . . . 16746 ATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGA I V - D I - K L N L E N L F V Y - M L F R I F E S - I W R T C L Y T E - Y C L G Y L K V K S G E L V C I L N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (20155 20005,17409 17065) SCR (e 0.993 d 0.987 a 1.000,e 0.974) Exon 1 20155 20005 ( 151 n); score: 0.993 Intron 1 20004 17410 (2595 n); Pd: 0.987 Pa: 1.000 Exon 2 17409 17065 ( 345 n); score: 0.974 PGS (20079 20005,17409 17065) SGN-E338618+ PGS (20155 20005,17409 17121) SGN-E337588+ 3-phase translation of AGS-2 (-strand): . . . . . . 20155 AACGAAGGAATCGAAGCCGTTCTTCATCGGATTCGCCACCGTTTGCGGCGTCATTCCGGG N E G I E A V L H R I R H R L R R H S G T K E S K P F F I G F A T V C G V I P G R R N R S R S S S D S P P F A A S F R . . . . . . 20095 GATTATTGGTTTCTGCGTTATGTCAGCCACCAATACTCGCAGTCCTGAACTTGAAGCCCA D Y W F L R Y V S H Q Y S Q S - T - S P I I G F C V M S A T N T R S P E L E A Q G L L V S A L C Q P P I L A V L N L K P . . . . : . . 20035 ACTACGGAAGAACGCTCGTCCAGAATCCCTA : ATGATGGGTAAAGTTAATAAAGAGAGGTT T T E E R S S R I P : N D G - S - - R E V L R K N A R P E S L : M M G K V N K E R L N Y G R T L V Q N P - : - W V K L I K R G . . . . . . 17380 GGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGC G - V P W R T A E K G E H K - Q I C C S A E Y L G E L Q R K E N T N D R Y V A A W L S T L A N C R E R R T Q M T D M L Q . . . . . . 17320 TCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCC S K G R N V D K E T L P K N S T S P K S L K G E T L T R K P Y Q R I Q P V P N P L - R A K R - Q G N L T K E F N Q S Q I . . . . . . 17260 AAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGAT K - Y - S K E G T E V D R G L T G F V D S D I E A K K E Q K - I V A - P V L L I Q V I L K Q R R N R S R S W L N R F C - . . . . . . 17200 TTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACA L V W Y F Y F F Q W I K L W N G I M D T - F G T S T F S N G - S F G M E S W T Q F S L V L L L F P M D K A L E W N H G H . . . . . . 17140 ACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGT T G V I A I Y L - N L Y K - N L K N D C L E L L L Y I F E T C T S K I - R T T V N W S Y C Y I S L K L V Q V K F E E R L . . 17080 TGTCGAATGAGTGAAA C R M S E V E - V K L S N E - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-5_AGS-2_PPS_1 (20154 20005,17409 17227) (frame '2'; 330 bp, 110 residues) 1 TKESKPFFIG FATVCGVIPG IIGFCVMSAT NTRSPELEAQ LRKNARPESL MMGKVNKERL 61 AEYLGELQRK ENTNDRYVAA LKGETLTRKP YQRIQPVPNP SDIEAKKEQK - PGL 6 (- strand): 24042 20834 AGS-1 (23153 20834) SCR (e 0.994) Exon 1 23153 20834 (2320 n); score: 0.994 PGS (21472 20834) SGN-E395395- PGS (21478 21101) SGN-E203944+ PGS (21896 21340) SGN-E302221+ PGS (22441 21778) SGN-E398442+ PGS (22440 21942) SGN-E204998+ PGS (22651 22044) SGN-E371690+ PGS (22610 22164) SGN-E241579+ PGS (22651 22223) SGN-E280658+ PGS (22651 22351) SGN-E370462+ PGS (23153 22650) SGN-E300728+ 3-phase translation of AGS-1 (-strand): . . . . . . 23153 GACATAGCAATCTTGTAACTGATGAGGAGGTAGTGGGTTTTGAGAATAAAGCAGAAGAAC D I A I L - L M R R - W V L R I K Q K N T - Q S C N - - G G S G F - E - S R R T H S N L V T D E E V V G F E N K A E E . . . . . . 23093 TAATTGATTATCTGATTAGAGGTACAAATGAGCTAGACGTTGTCCCAATTGTAGGCATGG - L I I - L E V Q M S - T L S Q L - A W N - L S D - R Y K - A R R C P N C R H G L I D Y L I R G T N E L D V V P I V G M . . . . . . 23033 GAGGACAAGGGAAAACGACAATTGCTAGAAAGTTGTACAATAATGACATTATTGTTTCTC E D K G K R Q L L E S C T I M T L L F L R T R E N D N C - K V V Q - - H Y C F S G G Q G K T T I A R K L Y N N D I I V S . . . . . . 22973 GCTTTGATGTTCGAGCATGGTGCATCATTTCTCAAACGTATAATCAGAGAGAGTTATTAC A L M F E H G A S F L K R I I R E S Y Y L - C S S M V H H F S N V - S E R V I T R F D V R A W C I I S Q T Y N Q R E L L . . . . . . 22913 AAGATATTTTTAGTCAAGTTACAGGTTTCAACGACAATGGAGCTACGGTTGACGTTCTTG K I F L V K L Q V S T T M E L R L T F L R Y F - S S Y R F Q R Q W S Y G - R S C Q D I F S Q V T G F N D N G A T V D V L . . . . . . 22853 CCGACATGTTGAGGAGAAAATTAATGGGAAAGAGATATCTCATTGTATTGGATGATATGT P T C - G E N - W E R D I S L Y W M I C R H V E E K I N G K E I S H C I G - Y V A D M L R R K L M G K R Y L I V L D D M . . . . . . 22793 GGGATTGTATGGTATGGGATGACTTAAGGCTTTCTTTTCCAGATGTTGGAATTAGAAGCA G I V W Y G M T - G F L F Q M L E L E A G L Y G M G - L K A F F S R C W N - K Q W D C M V W D D L R L S F P D V G I R S . . . . . . 22733 GAATAGTCGTAACAACTCGACTTGAAGAAGTGGGTAAGCAAGTCAAGTACCATACTGATC E - S - Q L D L K K W V S K S S T I L I N S R N N S T - R S G - A S Q V P Y - S R I V V T T R L E E V G K Q V K Y H T D . . . . . . 22673 CTTATTCTCTTCCATTCCTCACAACAGAAGAGAGTTGCCAATTGTTGCAGAAAAAAGTGT L I L F H S S Q Q K R V A N C C R K K C L F S S I P H N R R E L P I V A E K S V P Y S L P F L T T E E S C Q L L Q K K V . . . . . . 22613 TTCAAAAGGAAGATTGCCCGCCTGAACTACAAGATGTGAGTCAAGCAGTAGCAGAAAAAT F K R K I A R L N Y K M - V K Q - Q K N S K G R L P A - T T R C E S S S S R K M F Q K E D C P P E L Q D V S Q A V A E K . . . . . . 22553 GCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGG A K D C P - W L S W - L E - S K K G K W Q R T A P S G C L G S W N N Q K K E N G C K G L P L V V V L V A G I I K K R K M . . . . . . 22493 AAGAATCTTGGTGGAATGAGGTGAAAGATGCTTTATTTGACTATCTTGACAGTGAGTTCG K N L G G M R - K M L Y L T I L T V S S R I L V E - G E R C F I - L S - Q - V R E E S W W N E V K D A L F D Y L D S E F . . . . . . 22433 AAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGC K N I V W Q L C S - V L I T Y P T V - S R I - S G N Y A V E F - - L T P L F K A E E Y S L A T M Q L S F D N L P H C L K . . . . . . 22373 CTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGA L V F F I W E C F R R T Q E F Q H L H - L S S L Y G N V F G G R K N S S I Y I D P C L L Y M G M F S E D A R I P A S T L . . . . . . 22313 TAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAG - V Y G L L K D S W R T L N L V H - W K K F M D C - R I R G E H - I W Y I N G R I S L W I A E G F V E N T E S G T L M E . . . . . . 22253 AGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGA R K L K V T - W I S L A V T W - C F Q R G S - R L L D G S H - Q - H G N A F K E E E A E G Y L M D L I S S N M V M L S K . . . . . . 22193 GAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCT E V I R V K S N T V R F M M L C I T F A K L - G - S Q I L S G S - C C A S L L L R S Y K G K V K Y C Q V H D V V H H F C . . . . . . 22133 TGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTC W K R V E K Q S L C L Q - R V N I S S F G K E - R S K V Y A C S E G S I Y P V S L E K S R E A K F M L A V K G Q Y I Q F . . . . . . 22073 AACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGT N L W I G R E L E - A S V L V K S F P S T F G L E G N S S E L Q F - - R A F Q V Q P L D W K G T R V S F S F S E E L S K . . . . . . 22013 TTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAA L H L W S P K H R S L S I N T - G H - - C I S G L Q N T E A F P S T L E V I D N F A S L V S K T Q K P F H Q H L R S L I . . . . . . 21953 CGACCAATCGAGCAGAATCTATTGATGTGATTCTCTTCTGTCAGATTAGTGAATTGCGAC R P I E Q N L L M - F S S V R L V N C D D Q S S R I Y - C D S L L S D - - I A T T T N R A E S I D V I L F C Q I S E L R . . . . . . 21893 TTCTTAAAGTCTTGGATTTGAGTTCTTATACTGTGGAATTTTTGTCGTTAGCTACATTCA F L K S W I - V L I L W N F C R - L H S S - S L G F E F L Y C G I F V V S Y I Q L L K V L D L S S Y T V E F L S L A T F . . . . . . 21833 AACCACTAAATCAGCTGAAGTACCTCGCAGTTCAGGCTGATAAATTCTATTTTGATCCAG N H - I S - S T S Q F R L I N S I L I Q T T K S A E V P R S S G - - I L F - S R K P L N Q L K Y L A V Q A D K F Y F D P . . . . . . 21773 GATCACATCTTCCCCATATAGAAACTTTCATTGTAAAGAATTTTCCTTATGGTATAGGGT D H I F P I - K L S L - R I F L M V - G I T S S P Y R N F H C K E F S L W Y R V G S H L P H I E T F I V K N F P Y G I G . . . . . . 21713 TACCAGTGTCTTTTTGGGAAATGAAAAAATTAAGGCATGCTCATTTTGGTAAGGCTGAAT Y Q C L F G K - K N - G M L I L V R L N T S V F L G N E K I K A C S F W - G - I L P V S F W E M K K L R H A H F G K A E . . . . . . 21653 TTGATAAGCAGGGGCTCTCTGAAGGATCCTCTAAATTGGAAAATTTGAGGATATTAAAGA L I S R G S L K D P L N W K I - G Y - R - - A G A L - R I L - I G K F E D I K E F D K Q G L S E G S S K L E N L R I L K . . . . . . 21593 ATATTATACAATTTGATAGGGTGGATGTGTTATCAACGAGGTGTCCTAATCTTCAACAAC I L Y N L I G W M C Y Q R G V L I F N N Y Y T I - - G G C V I N E V S - S S T T N I I Q F D R V D V L S T R C P N L Q Q . . . . . . 21533 TTCAAATCACATATTTTGGGAATAATGAAGAGCCTTTTTGTCCCAAATTGGAGAATCTTA F K S H I L G I M K S L F V P N W R I L S N H I F W E - - R A F L S Q I G E S Y L Q I T Y F G N N E E P F C P K L E N L . . . . . . 21473 CCCAGCTTCAACAACTTCAACTTTCCTTTGTGCGTCCCCGCACTCTATCCGGGTTACAGT P S F N N F N F P L C V P A L Y P G Y S P A S T T S T F L C A S P H S I R V T V T Q L Q Q L Q L S F V R P R T L S G L Q . . . . . . 21413 TGCCTTCAAATTTAAATAAGTTGGTACTTGAAGGAATTCATATAGAAAGTGTTATTCCCT C L Q I - I S W Y L K E F I - K V L F P A F K F K - V G T - R N S Y R K C Y S L L P S N L N K L V L E G I H I E S V I P . . . . . . 21353 TCATTGCGGGACTACCAAGCCTGGAATATCTCCGATTACAGGATGTGTGTTTTCCTCAAT S L R D Y Q A W N I S D Y R M C V F L N H C G T T K P G I S P I T G C V F S S I F I A G L P S L E Y L R L Q D V C F P Q . . . . . . 21293 CAGAAGAGTGGTGCCTTGGAGATATGACGTTCCATAAACTTAAGTTGTTGAAACTGGTGA Q K S G A L E I - R S I N L S C - N W - R R V V P W R Y D V P - T - V V E T G E S E E W C L G D M T F H K L K L L K L V . . . . . . 21233 AGTTAAATATATCAAGGTGGGATGTCTCAGAGGAATCATTTCCGTTGCTTGAAACACTCG S - I Y Q G G M S Q R N H F R C L K H S V K Y I K V G C L R G I I S V A - N T R K L N I S R W D V S E E S F P L L E T L . . . . . . 21173 TTATAAAGAAGTGCGGTGACCTAGAGGAGATCCCAGTTAGCTTTGCTGATATTCCCACAT L - R S A V T - R R S Q L A L L I F P H Y K E V R - P R G D P S - L C - Y S H I V I K K C G D L E E I P V S F A D I P T . . . . . . 21113 TGGAACAGATTAAATTGATTGGGTCCTGGAAAGTATCTCTGGAGGATTCAGCTGTGAGAA W N R L N - L G P G K Y L W R I Q L - E G T D - I D W V L E S I S G G F S C E N L E Q I K L I G S W K V S L E D S A V R . . . . . . 21053 TGAAGGAAGAAATCATACAGATTGAAGGATGTGATCGTTTACACCTCGTCAAACAACACT - R K K S Y R L K D V I V Y T S S N N T E G R N H T D - R M - S F T P R Q T T L M K E E I I Q I E G C D R L H L V K Q H . . . . . . 20993 CAGATTGATGATAGCTAATTGTTGCAGCCACTCAAGTCTTGCTAGCCCATTTCTCTTTTG Q I D D S - L L Q P L K S C - P I S L L R L M I A N C C S H S S L A S P F L F C S D - - - L I V A A T Q V L L A H F S F . . . . . . 20933 TTGTAACACAACTACTATTTGCTACGTTTGTTTTCATTGATACACTCTTTTTATGTATCA L - H N Y Y L L R L F S L I H S F Y V S C N T T T I C Y V C F H - Y T L F M Y H V V T Q L L F A T F V F I D T L F L C I . . . . 20873 TATGATTGGAGATAAATATAAATCAGTTGCTCATTCACTG Y D W R - I - I S C S F T M I G D K Y K S V A H S L I - L E I N I N Q L L I H Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-6_AGS-1_PPS_1 (23151 20986) (frame '0'; 2163 bp, 721 residues) 1 HSNLVTDEEV VGFENKAEEL IDYLIRGTNE LDVVPIVGMG GQGKTTIARK LYNNDIIVSR 61 FDVRAWCIIS QTYNQRELLQ DIFSQVTGFN DNGATVDVLA DMLRRKLMGK RYLIVLDDMW 121 DCMVWDDLRL SFPDVGIRSR IVVTTRLEEV GKQVKYHTDP YSLPFLTTEE SCQLLQKKVF 181 QKEDCPPELQ DVSQAVAEKC KGLPLVVVLV AGIIKKRKME ESWWNEVKDA LFDYLDSEFE 241 EYSLATMQLS FDNLPHCLKP CLLYMGMFSE DARIPASTLI SLWIAEGFVE NTESGTLMEE 301 EAEGYLMDLI SSNMVMLSKR SYKGKVKYCQ VHDVVHHFCL EKSREAKFML AVKGQYIQFQ 361 PLDWKGTRVS FSFSEELSKF ASLVSKTQKP FHQHLRSLIT TNRAESIDVI LFCQISELRL 421 LKVLDLSSYT VEFLSLATFK PLNQLKYLAV QADKFYFDPG SHLPHIETFI VKNFPYGIGL 481 PVSFWEMKKL RHAHFGKAEF DKQGLSEGSS KLENLRILKN IIQFDRVDVL STRCPNLQQL 541 QITYFGNNEE PFCPKLENLT QLQQLQLSFV RPRTLSGLQL PSNLNKLVLE GIHIESVIPF 601 IAGLPSLEYL RLQDVCFPQS EEWCLGDMTF HKLKLLKLVK LNISRWDVSE ESFPLLETLV 661 IKKCGDLEEI PVSFADIPTL EQIKLIGSWK VSLEDSAVRM KEEIIQIEGC DRLHLVKQHS 721 D- 3-phase translation of AGS-1 (+strand): . . . . . . 20834 CAGTGAATGAGCAACTGATTTATATTTATCTCCAATCATATGATACATAAAAAGAGTGTA Q - M S N - F I F I S N H M I H K K S V S E - A T D L Y L S P I I - Y I K R V Y V N E Q L I Y I Y L Q S Y D T - K E C . . . . . . 20894 TCAATGAAAACAAACGTAGCAAATAGTAGTTGTGTTACAACAAAAGAGAAATGGGCTAGC S M K T N V A N S S C V T T K E K W A S Q - K Q T - Q I V V V L Q Q K R N G L A I N E N K R S K - - L C Y N K R E M G - . . . . . . 20954 AAGACTTGAGTGGCTGCAACAATTAGCTATCATCAATCTGAGTGTTGTTTGACGAGGTGT K T - V A A T I S Y H Q S E C C L T R C R L E W L Q Q L A I I N L S V V - R G V Q D L S G C N N - L S S I - V L F D E V . . . . . . 21014 AAACGATCACATCCTTCAATCTGTATGATTTCTTCCTTCATTCTCACAGCTGAATCCTCC K R S H P S I C M I S S F I L T A E S S N D H I L Q S V - F L P S F S Q L N P P - T I T S F N L Y D F F L H S H S - I L . . . . . . 21074 AGAGATACTTTCCAGGACCCAATCAATTTAATCTGTTCCAATGTGGGAATATCAGCAAAG R D T F Q D P I N L I C S N V G I S A K E I L S R T Q S I - S V P M W E Y Q Q S Q R Y F P G P N Q F N L F Q C G N I S K . . . . . . 21134 CTAACTGGGATCTCCTCTAGGTCACCGCACTTCTTTATAACGAGTGTTTCAAGCAACGGA L T G I S S R S P H F F I T S V S S N G - L G S P L G H R T S L - R V F Q A T E A N W D L L - V T A L L Y N E C F K Q R . . . . . . 21194 AATGATTCCTCTGAGACATCCCACCTTGATATATTTAACTTCACCAGTTTCAACAACTTA N D S S E T S H L D I F N F T S F N N L M I P L R H P T L I Y L T S P V S T T - K - F L - D I P P - Y I - L H Q F Q Q L . . . . . . 21254 AGTTTATGGAACGTCATATCTCCAAGGCACCACTCTTCTGATTGAGGAAAACACACATCC S L W N V I S P R H H S S D - G K H T S V Y G T S Y L Q G T T L L I E E N T H P K F M E R H I S K A P L F - L R K T H I . . . . . . 21314 TGTAATCGGAGATATTCCAGGCTTGGTAGTCCCGCAATGAAGGGAATAACACTTTCTATA C N R R Y S R L G S P A M K G I T L S I V I G D I P G L V V P Q - R E - H F L Y L - S E I F Q A W - S R N E G N N T F Y . . . . . . 21374 TGAATTCCTTCAAGTACCAACTTATTTAAATTTGAAGGCAACTGTAACCCGGATAGAGTG - I P S S T N L F K F E G N C N P D R V E F L Q V P T Y L N L K A T V T R I E C M N S F K Y Q L I - I - R Q L - P G - S . . . . . . 21434 CGGGGACGCACAAAGGAAAGTTGAAGTTGTTGAAGCTGGGTAAGATTCTCCAATTTGGGA R G R T K E S - S C - S W V R F S N L G G D A Q R K V E V V E A G - D S P I W D A G T H K G K L K L L K L G K I L Q F G . . . . . . 21494 CAAAAAGGCTCTTCATTATTCCCAAAATATGTGATTTGAAGTTGTTGAAGATTAGGACAC Q K G S S L F P K Y V I - S C - R L G H K K A L H Y S Q N M - F E V V E D - D T T K R L F I I P K I C D L K L L K I R T . . . . . . 21554 CTCGTTGATAACACATCCACCCTATCAAATTGTATAATATTCTTTAATATCCTCAAATTT L V D N T S T L S N C I I F F N I L K F S L I T H P P Y Q I V - Y S L I S S N F P R - - H I H P I K L Y N I L - Y P Q I . . . . . . 21614 TCCAATTTAGAGGATCCTTCAGAGAGCCCCTGCTTATCAAATTCAGCCTTACCAAAATGA S N L E D P S E S P C L S N S A L P K - P I - R I L Q R A P A Y Q I Q P Y Q N E F Q F R G S F R E P L L I K F S L T K M . . . . . . 21674 GCATGCCTTAATTTTTTCATTTCCCAAAAAGACACTGGTAACCCTATACCATAAGGAAAA A C L N F F I S Q K D T G N P I P - G K H A L I F S F P K K T L V T L Y H K E N S M P - F F H F P K R H W - P Y T I R K . . . . . . 21734 TTCTTTACAATGAAAGTTTCTATATGGGGAAGATGTGATCCTGGATCAAAATAGAATTTA F F T M K V S I W G R C D P G S K - N L S L Q - K F L Y G E D V I L D Q N R I Y I L Y N E S F Y M G K M - S W I K I E F . . . . . . 21794 TCAGCCTGAACTGCGAGGTACTTCAGCTGATTTAGTGGTTTGAATGTAGCTAACGACAAA S A - T A R Y F S - F S G L N V A N D K Q P E L R G T S A D L V V - M - L T T K I S L N C E V L Q L I - W F E C S - R Q . . . . . . 21854 AATTCCACAGTATAAGAACTCAAATCCAAGACTTTAAGAAGTCGCAATTCACTAATCTGA N S T V - E L K S K T L R S R N S L I - I P Q Y K N S N P R L - E V A I H - S D K F H S I R T Q I Q D F K K S Q F T N L . . . . . . 21914 CAGAAGAGAATCACATCAATAGATTCTGCTCGATTGGTCGTTATCAATGACCTCAAGTGT Q K R I T S I D S A R L V V I N D L K C R R E S H Q - I L L D W S L S M T S S V T E E N H I N R F C S I G R Y Q - P Q V . . . . . . 21974 TGATGGAAAGGCTTCTGTGTTTTGGAGACCAGAGATGCAAACTTGGAAAGCTCTTCACTA - W K G F C V L E T R D A N L E S S S L D G K A S V F W R P E M Q T W K A L H - L M E R L L C F G D Q R C K L G K L F T . . . . . . 22034 AAACTGAAGCTCACTCGAGTTCCCTTCCAATCCAAAGGTTGAAACTGGATATATTGACCC K L K L T R V P F Q S K G - N W I Y - P N - S S L E F P S N P K V E T G Y I D P K T E A H S S S L P I Q R L K L D I L T . . . . . . 22094 TTCACTGCAAGCATAAACTTTGCTTCTCTACTCTTTTCCAAGCAAAAGTGATGCACAACA F T A S I N F A S L L F S K Q K - C T T S L Q A - T L L L Y S F P S K S D A Q H L H C K H K L C F S T L F Q A K V M H N . . . . . . 22154 TCATGAACCTGACAGTATTTGACTTTACCCTTATAACTTCTCTTTGAAAGCATTACCATG S - T - Q Y L T L P L - L L F E S I T M H E P D S I - L Y P Y N F S L K A L P C I M N L T V F D F T L I T S L - K H Y H . . . . . . 22214 TTACTGCTAATGAGATCCATCAAGTAACCTTCAGCTTCCTCTTCCATTAATGTACCAGAT L L L M R S I K - P S A S S S I N V P D Y C - - D P S S N L Q L P L P L M Y Q I V T A N E I H Q V T F S F L F H - C T R . . . . . . 22274 TCAGTGTTCTCCACGAATCCTTCAGCAATCCATAAACTTATCAATGTAGATGCTGGAATT S V F S T N P S A I H K L I N V D A G I Q C S P R I L Q Q S I N L S M - M L E F F S V L H E S F S N P - T Y Q C R C W N . . . . . . 22334 CTTGCGTCCTCCGAAAACATTCCCATATAAAGAAGACAAGGCTTTAAACAGTGGGGTAAG L A S S E N I P I - R R Q G F K Q W G K L R P P K T F P Y K E D K A L N S G V S S C V L R K H S H I K K T R L - T V G - . . . . . . 22394 TTATCAAAACTCAACTGCATAGTTGCCAGACTATATTCTTCGAACTCACTGTCAAGATAG L S K L N C I V A R L Y S S N S L S R - Y Q N S T A - L P D Y I L R T H C Q D S V I K T Q L H S C Q T I F F E L T V K I . . . . . . 22454 TCAAATAAAGCATCTTTCACCTCATTCCACCAAGATTCTTCCATTTTCCTTTTTTTGATT S N K A S F T S F H Q D S S I F L F L I Q I K H L S P H S T K I L P F S F F - L V K - S I F H L I P P R F F H F P F F D . . . . . . 22514 ATTCCAGCTACCAAGACAACCACTAGGGGCAGTCCTTTGCATTTTTCTGCTACTGCTTGA I P A T K T T T R G S P L H F S A T A - F Q L P R Q P L G A V L C I F L L L L D Y S S Y Q D N H - G Q S F A F F C Y C L . . . . . . 22574 CTCACATCTTGTAGTTCAGGCGGGCAATCTTCCTTTTGAAACACTTTTTTCTGCAACAAT L T S C S S G G Q S S F - N T F F C N N S H L V V Q A G N L P F E T L F S A T I T H I L - F R R A I F L L K H F F L Q Q . . . . . . 22634 TGGCAACTCTCTTCTGTTGTGAGGAATGGAAGAGAATAAGGATCAGTATGGTACTTGACT W Q L S S V V R N G R E - G S V W Y L T G N S L L L - G M E E N K D Q Y G T - L L A T L F C C E E W K R I R I S M V L D . . . . . . 22694 TGCTTACCCACTTCTTCAAGTCGAGTTGTTACGACTATTCTGCTTCTAATTCCAACATCT C L P T S S S R V V T T I L L L I P T S A Y P L L Q V E L L R L F C F - F Q H L L L T H F F K S S C Y D Y S A S N S N I . . . . . . 22754 GGAAAAGAAAGCCTTAAGTCATCCCATACCATACAATCCCACATATCATCCAATACAATG G K E S L K S S H T I Q S H I S S N T M E K K A L S H P I P Y N P T Y H P I Q - W K R K P - V I P Y H T I P H I I Q Y N . . . . . . 22814 AGATATCTCTTTCCCATTAATTTTCTCCTCAACATGTCGGCAAGAACGTCAACCGTAGCT R Y L F P I N F L L N M S A R T S T V A D I S F P L I F S S T C R Q E R Q P - L E I S L S H - F S P Q H V G K N V N R S . . . . . . 22874 CCATTGTCGTTGAAACCTGTAACTTGACTAAAAATATCTTGTAATAACTCTCTCTGATTA P L S L K P V T - L K I S C N N S L - L H C R - N L - L D - K Y L V I T L S D Y S I V V E T C N L T K N I L - - L S L I . . . . . . 22934 TACGTTTGAGAAATGATGCACCATGCTCGAACATCAAAGCGAGAAACAATAATGTCATTA Y V - E M M H H A R T S K R E T I M S L T F E K - C T M L E H Q S E K Q - C H Y I R L R N D A P C S N I K A R N N N V I . . . . . . 22994 TTGTACAACTTTCTAGCAATTGTCGTTTTCCCTTGTCCTCCCATGCCTACAATTGGGACA L Y N F L A I V V F P C P P M P T I G T C T T F - Q L S F S L V L P C L Q L G Q I V Q L S S N C R F P L S S H A Y N W D . . . . . . 23054 ACGTCTAGCTCATTTGTACCTCTAATCAGATAATCAATTAGTTCTTCTGCTTTATTCTCA T S S S F V P L I R - S I S S S A L F S R L A H L Y L - S D N Q L V L L L Y S Q N V - L I C T S N Q I I N - F F C F I L . . . . 23114 AAACCCACTACCTCCTCATCAGTTACAAGATTGCTATGTC K P T T S S S V T R L L C N P L P P H Q L Q D C Y V K T H Y L L I S Y K I A M Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-6_AGS-1_PPS_1 (20963 21298) (frame '1'; 333 bp, 111 residues) 1 VAATISYHQS ECCLTRCKRS HPSICMISSF ILTAESSRDT FQDPINLICS NVGISAKLTG 61 ISSRSPHFFI TSVSSNGNDS SETSHLDIFN FTSFNNLSLW NVISPRHHSS D- >C09HBa0109D11.1+_PGL-6_AGS-1_PPS_2 (21964 22200) (frame '0'; 234 bp, 78 residues) 1 PQVLMERLLC FGDQRCKLGK LFTKTEAHSS SLPIQRLKLD ILTLHCKHKL CFSTLFQAKV 61 MHNIMNLTVF DFTLITSL- >C09HBa0109D11.1+_PGL-6_AGS-1_PPS_3 (22673 22900) (frame '1'; 225 bp, 75 residues) 1 GSVWYLTCLP TSSSRVVTTI LLLIPTSGKE SLKSSHTIQS HISSNTMRYL FPINFLLNMS 61 ARTSTVAPLS LKPVT- AGS-2 (24042 23266) SCR (e 0.844) Exon 1 24042 23266 ( 777 n); score: 0.844 PGS (24042 23266) SGN-E539103+ PGS (24042 23667) SGN-E280953+ 3-phase translation of AGS-2 (-strand): . . . . . . 24042 TTGATTGTGTTTGTGGAGCTGGAAATGAAGAAGCTTTTTCATGGTGAAGTAAAGGCTTCA L I V F V E L E M K K L F H G E V K A S - L C L W S W K - R S F F M V K - R L Q D C V C G A G N E E A F S W - S K G F . . . . . . 23982 AAGTTTACTCGATCAAAAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCACATCAT K F T R S K T F K D K K L P K G F S H H S L L D Q K L S R T R N Y Q K D F H I I K V Y S I K N F Q G Q E I T K R I F T S . . . . . . 23922 CTCCACAATCTGTTGATGTATCTCAGAAACAAAAAGCTCGAGAATTTTCCTAATAATATC L H N L L M Y L R N K K L E N F P N N I S T I C - C I S E T K S S R I F L I I S S P Q S V D V S Q K Q K A R E F S - - Y . . . . . . 23862 GCTGCTCAAAATATCGATGTGGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTG A A Q N I D V A I E F L L V F L D A D V L L K I S M W Q - S S C W F S L M L M C R C S K Y R C G N R V L V G F P - C - C . . . . . . 23802 TCAAATCATGTTATTAATGGTAACTGGTTGAAAGAGGTCTTGTTAAAGGTTGGAGCTATA S N H V I N G N W L K E V L L K V G A I Q I M L L M V T G - K R S C - R L E L - V K S C Y - W - L V E R G L V K G W S Y . . . . . . 23742 GCGGGTGATATTCTATATGTAATTCAAAAGCTTCTTCCTAGATCAATAAACAAAGATGAA A G D I L Y V I Q K L L P R S I N K D E R V I F Y M - F K S F F L D Q - T K M K S G - Y S I C N S K A S S - I N K Q R - . . . . . . 23682 ACTAGCAACATAAGTCTTTGCTCAATACAGATATTGGAGAAGACTAAAGATCTGAAGGCA T S N I S L C S I Q I L E K T K D L K A L A T - V F A Q Y R Y W R R L K I - R H N - Q H K S L L N T D I G E D - R S E G . . . . . . 23622 CAAGTTGAGACGTACTACAAATCCTTAAAATTTACTCCATCTCAGTTCCCCACCTTTGGT Q V E T Y Y K S L K F T P S Q F P T F G K L R R T T N P - N L L H L S S P P L V T S - D V L Q I L K I Y S I S V P H L W . . . . . . 23562 GGATTGAGCTTTCTGGATTCTCTTTTAAGGAAACTGAATGAGATGTCGACATCTAAGTCC G L S F L D S L L R K L N E M S T S K S D - A F W I L F - G N - M R C R H L S P W I E L S G F S F K E T E - D V D I - V . . . . . . 23502 GGATTAGGTTTCCTGACGAAACCTCTTTTAGGGAATTTGGAGAAAGAGCTATCATCTCTT G L G F L T K P L L G N L E K E L S S L D - V S - R N L F - G I W R K S Y H L L R I R F P D E T S F R E F G E R A I I S . . . . . . 23442 GCATCCATTTTAGAGAAGGAGCTCTCATCCATTTTCAGTGATGTCGTGCACCATGAACAT A S I L E K E L S S I F S D V V H H E H H P F - R R S S H P F S V M S C T M N I C I H F R E G A L I H F Q - C R A P - T . . . . . . 23382 AACATTCCTAAAGATCTTCAGAGACGTACCATCAATTTGGCATGTGAGGCTGAGGTTGCT N I P K D L Q R R T I N L A C E A E V A T F L K I F R D V P S I W H V R L R L L - H S - R S S E T Y H Q F G M - G - G C . . . . . . 23322 ATTGATTCTATTCTTGCTCAGTATAATGTTTTTTTGCATATTTTTTGCTCACTTCCT I D S I L A Q Y N V F L H I F C S L P L I L F L L S I M F F C I F F A H F Y - F Y S C S V - C F F A Y F L L T S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-6_AGS-2_PPS_1 (24042 23266) (frame '1'; 777 bp, 259 residues) 1 LIVFVELEMK KLFHGEVKAS KFTRSKTFKD KKLPKGFSHH LHNLLMYLRN KKLENFPNNI 61 AAQNIDVAIE FLLVFLDADV SNHVINGNWL KEVLLKVGAI AGDILYVIQK LLPRSINKDE 121 TSNISLCSIQ ILEKTKDLKA QVETYYKSLK FTPSQFPTFG GLSFLDSLLR KLNEMSTSKS 181 GLGFLTKPLL GNLEKELSSL ASILEKELSS IFSDVVHHEH NIPKDLQRRT INLACEAEVA 241 IDSILAQYNV FLHIFCSLP 3-phase translation of AGS-2 (+strand): . . . . . . 23266 AGGAAGTGAGCAAAAAATATGCAAAAAAACATTATACTGAGCAAGAATAGAATCAATAGC R K - A K N M Q K N I I L S K N R I N S G S E Q K I C K K T L Y - A R I E S I A E V S K K Y A K K H Y T E Q E - N Q - . . . . . . 23326 AACCTCAGCCTCACATGCCAAATTGATGGTACGTCTCTGAAGATCTTTAGGAATGTTATG N L S L T C Q I D G T S L K I F R N V M T S A S H A K L M V R L - R S L G M L C Q P Q P H M P N - W Y V S E D L - E C Y . . . . . . 23386 TTCATGGTGCACGACATCACTGAAAATGGATGAGAGCTCCTTCTCTAAAATGGATGCAAG F M V H D I T E N G - E L L L - N G C K S W C T T S L K M D E S S F S K M D A R V H G A R H H - K W M R A P S L K W M Q . . . . . . 23446 AGATGATAGCTCTTTCTCCAAATTCCCTAAAAGAGGTTTCGTCAGGAAACCTAATCCGGA R - - L F L Q I P - K R F R Q E T - S G D D S S F S K F P K R G F V R K P N P D E M I A L S P N S L K E V S S G N L I R . . . . . . 23506 CTTAGATGTCGACATCTCATTCAGTTTCCTTAAAAGAGAATCCAGAAAGCTCAATCCACC L R C R H L I Q F P - K R I Q K A Q S T L D V D I S F S F L K R E S R K L N P P T - M S T S H S V S L K E N P E S S I H . . . . . . 23566 AAAGGTGGGGAACTGAGATGGAGTAAATTTTAAGGATTTGTAGTACGTCTCAACTTGTGC K G G E L R W S K F - G F V V R L N L C K V G N - D G V N F K D L - Y V S T C A Q R W G T E M E - I L R I C S T S Q L V . . . . . . 23626 CTTCAGATCTTTAGTCTTCTCCAATATCTGTATTGAGCAAAGACTTATGTTGCTAGTTTC L Q I F S L L Q Y L Y - A K T Y V A S F F R S L V F S N I C I E Q R L M L L V S P S D L - S S P I S V L S K D L C C - F . . . . . . 23686 ATCTTTGTTTATTGATCTAGGAAGAAGCTTTTGAATTACATATAGAATATCACCCGCTAT I F V Y - S R K K L L N Y I - N I T R Y S L F I D L G R S F - I T Y R I S P A I H L C L L I - E E A F E L H I E Y H P L . . . . . . 23746 AGCTCCAACCTTTAACAAGACCTCTTTCAACCAGTTACCATTAATAACATGATTTGACAC S S N L - Q D L F Q P V T I N N M I - H A P T F N K T S F N Q L P L I T - F D T - L Q P L T R P L S T S Y H - - H D L T . . . . . . 23806 ATCAGCATCAAGGAAAACCAACAAGAACTCTATTGCCACATCGATATTTTGAGCAGCGAT I S I K E N Q Q E L Y C H I D I L S S D S A S R K T N K N S I A T S I F - A A I H Q H Q G K P T R T L L P H R Y F E Q R . . . . . . 23866 ATTATTAGGAAAATTCTCGAGCTTTTTGTTTCTGAGATACATCAACAGATTGTGGAGATG I I R K I L E L F V S E I H Q Q I V E M L L G K F S S F L F L R Y I N R L W R - Y Y - E N S R A F C F - D T S T D C G D . . . . . . 23926 ATGTGAAAATCCTTTTGGTAATTTCTTGTCCTTGAAAGTTTTTGATCGAGTAAACTTTGA M - K S F W - F L V L E S F - S S K L - C E N P F G N F L S L K V F D R V N F E D V K I L L V I S C P - K F L I E - T L . . . . . . 23986 AGCCTTTACTTCACCATGAAAAAGCTTCTTCATTTCCAGCTCCACAAACACAATCAA S L Y F T M K K L L H F Q L H K H N Q A F T S P - K S F F I S S S T N T I K P L L H H E K A S S F P A P Q T Q S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-6_AGS-2_PPS_1 (23366 23581) (frame '2'; 213 bp, 71 residues) 1 RSLGMLCSWC TTSLKMDESS FSKMDARDDS SFSKFPKRGF VRKPNPDLDV DISFSFLKRE 61 SRKLNPPKVG N- PGL 7 (+ strand): 41697 49576 AGS-1 (41697 42207,47176 47489,47829 48131) SCR (e 1.000 d 1.000 a 0.968,e 1.000 d 1.000 a 0.968,e 0.977) Exon 1 41697 42207 ( 511 n); score: 1.000 Intron 1 42208 47175 (4968 n); Pd: 1.000 Pa: 0.968 Exon 2 47176 47489 ( 314 n); score: 1.000 Intron 2 47490 47828 ( 339 n); Pd: 1.000 Pa: 0.968 Exon 3 47829 48131 ( 303 n); score: 0.977 PGS (41697 42104) SGN-E312877+ PGS (41792 42207,47176 47311) SGN-E302506+ PGS (42142 42207,47176 47489,47829 48131) SGN-E302507- 3-phase translation of AGS-1 (+strand): . . . . . . 41697 CCTCACCCCACCCACCCACCTCTCTCTCTATTAACTTCTCAACCTCCAAATCTTAACAAT P H P T H P P L S L L T S Q P P N L N N L T P P T H L S L Y - L L N L Q I L T I S P H P P T S L S I N F S T S K S - Q . . . . . . 41757 CCAATTCGAACAAATTATCAAATGTATCCATCATCAACATCTTCTTCATCACAAGGTTCA P I R T N Y Q M Y P S S T S S S S Q G S Q F E Q I I K C I H H Q H L L H H K V Q S N S N K L S N V S I I N I F F I T R F . . . . . . 41817 ATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCA M S H T S T T A G G A G G G L T R Y G S - A T P A P P L A A P A V V S L A T V Q N E P H Q H H R W R R R R W S H S L R F . . . . . . 41877 GCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTC A P G S F L T T A V E A V V N G N H E F L R D H F - L Q Q L K P S L T V I T S S S S G I I F N Y S S - S R R - R - S R V . . . . . . 41937 GCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTA A S H G S H H S H L G P S R F F Q S N L L L T D L I T H T L V L H G F F S P I - R F S R I S S L T P W S F T V F S V Q S . . . . . . 41997 GCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAG A S T S L N S E S T S K A K E Q S N L Q H L L R - I P N L Q V K R R N N R I Y R S I Y F V K F R I Y K - S E G T I E F T . . . . . . 42057 AGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCTGGAGGAGGAGTT R S I G F N D L T I G G G S G A G G G V G Q L V S M T - Q S A A E A A L E E E F E V N W F Q - L N N R R R K R R W R R S . . . . . . 42117 TTGCCGACGACTTCAACGACGCCGTTGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTT L P T T S T T P L V R H S S S P A R F L C R R L Q R R R W F D I V A H R R G S L F A D D F N D A V G S T - - L T G E V P . . . . : . . 42177 AATCAACTTGCTACTGCTGCAGGTGATACTG : TTTCAATGGGGAGAGGAAGCTATAACCCA N Q L A T A A G D T : V S M G R G S Y N P I N L L L L Q V I L : F Q W G E E A I T Q - S T C Y C C R - Y C : F N G E R K L - P . . . . . . 47205 AAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACA K G G G D S G R G I T R L N S Q L S F T K A V E I V A G E - Q G - T L S S A S Q K R R W R - W P G N N K A E L S A Q L H . . . . . . 47265 ACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATA T Q E A L S Q I A E E N E D I E G T S I R K K L F L K - Q R K M R I L K G P V - N A R S S F S N S R G K - G Y - R D Q Y . . . . . . 47325 GCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGT A N G H R K S T H S Y A S A S S F A M G P M A T E S Q H I L M P V Q V V S R W V S Q W P Q K V N T F L C Q C K - F R D G . . . . . . 47385 TCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAG S W E D N N S I M F S V T P S K R S K Q L G K I T T L - C S L S H L A N D P S R F L G R - Q L Y N V L C H T - Q T I Q A . . . . . : . 47445 ATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG : CTAATATGAACTTGA I S N D I V N G L D D G E T Q : L I - T - L A M T L S M G S M T G K L S : - Y E L E D - Q - H C Q W A R - R G N S : A N M N L . . . . . . 47844 AGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTA R S L S E N T - T F T V - H L C F Q H V G H Y Q K T H K P S P F D I C V F N M - K V T I R K H I N L H R L T S V F S T C . . . . . . 47904 AACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCT N G D R Y T S F T F F P L T T L Q L H S T A I D I L P L H F S P - Q P Y N Y I L K R R - I Y F L Y I F P L N N L T T T F . . . . . . 47964 GTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCA V Y V F L F F L Q K Y V K - N R Q N N P C M C F F S F C R S M - N K I D K I I H C V C V S F L S A E V C K I K - T K - S . . . . . . 48024 TGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGC C W H T Q S C F S C V T H T K I D E N C V G I L N H V S R V - L T Q K L M K T A M L A Y S I M F L V C N S H K N - - K L . . . . . 48084 ATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAA I F I T C G R M N - C F S I F E F L L L V G G - T D V F R F L H F Y Y L W E D E L M F F D F - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-7_AGS-1_PPS_1 (41697 42207,47176 47489,47829 47837) (frame '1'; 831 bp, 277 residues) 1 PHPTHPPLSL LTSQPPNLNN PIRTNYQMYP SSTSSSSQGS MSHTSTTAGG AGGGLTRYGS 61 APGSFLTTAV EAVVNGNHEF ASHGSHHSHL GPSRFFQSNL ASTSLNSEST SKAKEQSNLQ 121 RSIGFNDLTI GGGSGAGGGV LPTTSTTPLV RHSSSPARFL NQLATAAGDT VSMGRGSYNP 181 KGGGDSGRGI TRLNSQLSFT TQEALSQIAE ENEDIEGTSI ANGHRKSTHS YASASSFAMG 241 SWEDNNSIMF SVTPSKRSKQ ISNDIVNGLD DGETQLI- AGS-2 (47186 47489,48142 48279,48625 48690,48821 48889,49220 49576) SCR (e 1.000 d 1.000 a 0.937,e 1.000 d 0.990 a 0.997,e 1.000 d 0.997 a 0.984,e 1.000 d 0.994 a 0.991,e 1.000) Exon 1 47186 47489 ( 304 n); score: 1.000 Intron 1 47490 48141 ( 652 n); Pd: 1.000 Pa: 0.937 Exon 2 48142 48279 ( 138 n); score: 1.000 Intron 2 48280 48624 ( 345 n); Pd: 0.990 Pa: 0.997 Exon 3 48625 48690 ( 66 n); score: 1.000 Intron 3 48691 48820 ( 130 n); Pd: 0.997 Pa: 0.984 Exon 4 48821 48889 ( 69 n); score: 1.000 Intron 4 48890 49219 ( 330 n); Pd: 0.994 Pa: 0.991 Exon 5 49220 49576 ( 357 n); score: 1.000 PGS (47186 47489,48142 48279,48625 48690,48821 48889,49220 49311) SGN-E368037+ PGS (47186 47489,48142 48190) SGN-E241002+ PGS (47220 47489,48142 48279,48625 48690,48821 48853) SGN-E228508+ PGS (47460 47489,48142 48279,48625 48690,48821 48889,49220 49576) SGN-E368036- PGS (48664 48690,48821 48889,49220 49548) SGN-E302680+ 3-phase translation of AGS-2 (+strand): . . . . . . 47186 GAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAA E R K L - P K R R W R - W P G N N K A E R G S Y N P K G G G D S G R G I T R L N E E A I T Q K A V E I V A G E - Q G - . . . . . . 47246 CTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGA L S A Q L H N A R S S F S N S R G K - G S Q L S F T T Q E A L S Q I A E E N E D T L S S A S Q R K K L F L K - Q R K M R . . . . . . 47306 TATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGC Y - R D Q Y S Q W P Q K V N T F L C Q C I E G T S I A N G H R K S T H S Y A S A I L K G P V - P M A T E S Q H I L M P V . . . . . . 47366 AAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACC K - F R D G F L G R - Q L Y N V L C H T S S F A M G S W E D N N S I M F S V T P Q V V S R W V L G K I T T L - C S L S H . . . . . . 47426 TAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAAC - Q T I Q A D - Q - H C Q W A R - R G N S K R S K Q I S N D I V N G L D D G E T L A N D P S R L A M T L S M G S M T G K . : . . . . . 47486 TCAG : TTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCT S : V S V W L V S D S S R N S I Y G - I A Q : F Q F G L S Q T A L E I A S M D R L L L S : F S L A C L R Q L - K - H L W I D C . . . . . . 48198 GCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCA A H P R G F C S L Q N S C Q A W L C Y S H I P E D S V P C K I R A K R G C A T H C T S P R I L F L A K F V P S V V V L L . . . : . . . 48258 TCCTCGCAGCATTGCAGAAAGG : GAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTT S S Q H C R K : G E K N Q N - W E T K E V P R S I A E R : E R R T R I S G K L K K L I L A A L Q K G : R E E P E L V G N - R S . . . : . . . 48663 ACAAGATCTTGTTCCAAACATGGACAAG : CAAACGAGCTATGCTGACATGCTGGATCTAGC T R S C S K H G Q : A N E L C - H A G S S Q D L V P N M D K : Q T S Y A D M L D L A Y K I L F Q T W T S : K R A M L T C W I - . . . . : . . 48853 AGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAG : AATCTGAATACAGAACTTGAAAA S A A Y S N P S R S G S : E S E Y R T - K V Q H I R T L Q D Q V Q : N L N T E L E N Q C S I F E P F K I R F R : I - I Q N L K . . . . . . 49243 CTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTG L Q M W M - E I K S I T K W E E A L - L C K C G C R K S S Q - Q N G R K H F S - T A N V D V G N Q V N N K M G G S T L A . . . . . . 49303 AAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGT K I D L K G F L S P L F C F L E T Q I C R L T - K D F C H H Y F A S - K L K F V E D - L K R I F V T I I L L L R N S N L . . . . . . 49363 ACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTT T Y G S K F H T S F L K L K S E L S L F H M E V N F I L V F - S - K V N S L C F Y I W K - I S Y - F F K A K K - T L F V . . . . . . 49423 TTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCT F F L F P F P V R R L R I - L F W I I S F F F S L F Q L E D Y V Y D C F G L F L F F S F P F S S - K T T Y M I V L D Y F . . . . . . 49483 AGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTG S F L F S S N I Y I F N L F L S L F C L V F F F H L T F T F L I Y F - V Y F A - - F S F F I - H L H F - F I F E F I L L . . . . 49543 AAGATCATAAAAGCTAATTGATGATGTTGTACAA K I I K A N - - C C T R S - K L I D D V V Q E D H K S - L M M L Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-7_AGS-2_PPS_1 (47187 47489,48142 48279,48625 48690,48821 48889,49220 49276) (frame '2'; 630 bp, 210 residues) 1 RGSYNPKGGG DSGRGITRLN SQLSFTTQEA LSQIAEENED IEGTSIANGH RKSTHSYASA 61 SSFAMGSWED NNSIMFSVTP SKRSKQISND IVNGLDDGET QFQFGLSQTA LEIASMDRLL 121 HIPEDSVPCK IRAKRGCATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA 181 VQHIRTLQDQ VQNLNTELEN CKCGCRKSSQ - PGL 8 (+ strand): 50185 50966 AGS-1 (50185 50461,50714 50966) SCR (e 1.000 d 0.995 a 0.281,e 1.000) Exon 1 50185 50461 ( 277 n); score: 1.000 Intron 1 50462 50713 ( 252 n); Pd: 0.995 Pa: 0.281 Exon 2 50714 50966 ( 253 n); score: 1.000 PGS (50185 50461,50714 50966) SGN-E331265+ 3-phase translation of AGS-1 (+strand): . . . . . . 50185 AGAGAGAGAGAGAGAGGGAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATT R E R E R G S S S F F L Q T F K P S S I E R E R E G A L P S S F K H S N L H P F R E R E R E L F L L P S N I Q T F I H . . . . . . 50245 TCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTT S F H - T F S L T S P N T - T R K I Y L H F I K P F L - L L L I R E L G K Y I F F I S L N L F S N F S - Y V N S E N I S . . . . . . 50305 TGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTT C - N P N L R T M T L I F T P - C L F L V E I R I - E L - L S F L P H N V C F F L L K S E S E N Y D S H F Y P I M F V S . . . . . . 50365 CTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATA L L M K S A F N F I Y D - - I R K L K I S - - S Q L S I L F M I D E S E N - R - S L D E V S F Q F Y L - L M N Q K I E D . . . . : . . 50425 ATAAACAGGCATAAGAGAAGACAAAAGTTAACTAACT : GAAGTCTTGTACGGAAGATGGCT I N R H K R R Q K L T N : - S L V R K M A - T G I R E D K S - L T : E V L Y G R W L N K Q A - E K T K V N - L : K S C T E D G . . . . . . 50737 CAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTG Q N E I E D M L D H L R R I K S G G N L K M K L K I C - I T - E G S R V E V I W S K - N - R Y V R S P E K D Q E W R - S . . . . . . 50797 GATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTT D R V K I N R I E K L E M V F K Y H H V I G S R S I E L R N L K W C S S I I M F G - G Q D Q S N - E T - N G V Q V S S C . . . . . . 50857 CTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTT L L P D S I V K L K K K D K W I A K M V F C L I P S S N S K R R T N G L R K W F S F A - F H R Q T Q K E G Q M D C E N G . . . . . 50917 CAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTT Q W V L D G I P D E C K T N L N S G Y W M E F R M N V K L T L I S V G I G W N S G - M - N - P - F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-8_AGS-1_PPS_1 (50716 50964) (frame '1'; 249 bp, 83 residues) 1 SLVRKMAQNE IEDMLDHLRR IKSGGNLDRV KINRIEKLEM VFKYHHVLLP DSIVKLKKKD 61 KWIAKMVQWV LDGIPDECKT NLN PGL 9 (+ strand): 51467 55035 AGS-1 (51467 52260) SCR (e 1.000) Exon 1 51467 52260 ( 794 n); score: 1.000 PGS (51467 52260) SGN-E539103+ PGS (51468 51844) SGN-E280953+ 3-phase translation of AGS-1 (+strand): . . . . . . 51467 TCTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTT S - L S - - S W K - R K F F S V N - R L L D Y L S R A G N E E N F S R - T K G F L I I L V E L E M K K I F L G E L K A . . . . . . 51527 CCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATC P S L L N Q E L S R T R N Y Q K D F L I Q V Y S I K N F Q G Q E I T K R I F S S S K F T Q S R T F K D K K L P K G F S H . . . . . . 51587 ATCTCCATAGTCTGTTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATA I S I V C - C I L E T K S L R N F L I I S P - S V D V S - K Q K A - E I S - - - H L H S L L M Y L R N K K L E K F P N N . . . . . . 51647 ACTCTCCTCAAAATATTGATATAGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATG T L L K I L I - Q - S S C W F S L M L M L S S K Y - Y S N R V L V G F P - C - C N S P Q N I D I A I E F L L V F L D A D . . . . . . 51707 TCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTA S E I M - L M V T G - M K L W K R L E L R K S C N - W - L V E - S Y G K G W S Y V G N H V I N G N W L N E V M E K V G A . . . . . . 51767 TAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATAAAAAAAGATG - R V M F Y M - F K S F F L A L - K K M S G - C S I C N S K A S S - L Y K K R - I A G D V L Y V I Q K L L P S S I K K D . . . . . . 51827 ACAATAGCAAAATAAGTCTTTGCTCAATACAGATATGGGAGAAAACTAAAGATCTGAAGG T I A K - V F A Q Y R Y G R K L K I - R Q - Q N K S L L N T D M G E N - R S E G D N S K I S L C S I Q I W E K T K D L K . . . . . . 51887 CACAAGTGGAGACGCACTATAAATCCTTAAAATTCACTCCATCGCAATTCCCCACTGTTG H K W R R T I N P - N S L H R N S P L L T S G D A L - I L K I H S I A I P H C W A Q V E T H Y K S L K F T P S Q F P T V . . . . . . 51947 GTGGATGGAGCTTTCTGGATTCTCTTATGCGGAAACTGAAAGAGATGTCGAAATCTAAAT V D G A F W I L L C G N - K R C R N L N W M E L S G F S Y A E T E R D V E I - I G G W S F L D S L M R K L K E M S K S K . . . . . . 52007 CTTGTTTAGATTTCCTGATGAAACCTCTTTTGGGGAATTTGGAGAAAGAGCTATCAGCTC L V - I S - - N L F W G I W R K S Y Q L L F R F P D E T S F G E F G E R A I S S S C L D F L M K P L L G N L E K E L S A . . . . . . 52067 TTACATCCATTTTAGAGAAGGATCTGTCATCTTTATCATCCATTTTAAGCGATGTCGCCA L H P F - R R I C H L Y H P F - A M S P Y I H F R E G S V I F I I H F K R C R Q L T S I L E K D L S S L S S I L S D V A . . . . . . 52127 AGGTGCACCATGAACATGAAATTCTTCAAGATCTTCACAGGCGTACTATCAATTGGGCAT R C T M N M K F F K I F T G V L S I G H G A P - T - N S S R S S Q A Y Y Q L G I K V H H E H E I L Q D L H R R T I N W A . . . . . . 52187 ATGAAGCGGAAGTTGCGATTGACTCTATTCTTGCTCAGTATAATGTCTTTTGGCATATTT M K R K L R L T L F L L S I M S F G I F - S G S C D - L Y S C S V - C L L A Y F Y E A E V A I D S I L A Q Y N V F W H I . . 52247 TTTGCTCACTTCCT F A H F L L T S F C S L P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-9_AGS-1_PPS_1 (51469 52260) (frame '0'; 792 bp, 264 residues) 1 LIILVELEMK KIFLGELKAS KFTQSRTFKD KKLPKGFSHH LHSLLMYLRN KKLEKFPNNN 61 SPQNIDIAIE FLLVFLDADV GNHVINGNWL NEVMEKVGAI AGDVLYVIQK LLPSSIKKDD 121 NSKISLCSIQ IWEKTKDLKA QVETHYKSLK FTPSQFPTVG GWSFLDSLMR KLKEMSKSKS 181 CLDFLMKPLL GNLEKELSAL TSILEKDLSS LSSILSDVAK VHHEHEILQD LHRRTINWAY 241 EAEVAIDSIL AQYNVFWHIF CSLP 3-phase translation of AGS-1 (-strand): . . . . . . 52260 AGGAAGTGAGCAAAAAATATGCCAAAAGACATTATACTGAGCAAGAATAGAGTCAATCGC R K - A K N M P K D I I L S K N R V N R G S E Q K I C Q K T L Y - A R I E S I A E V S K K Y A K R H Y T E Q E - S Q S . . . . . . 52200 AACTTCCGCTTCATATGCCCAATTGATAGTACGCCTGTGAAGATCTTGAAGAATTTCATG N F R F I C P I D S T P V K I L K N F M T S A S Y A Q L I V R L - R S - R I S C Q L P L H M P N - - Y A C E D L E E F H . . . . . . 52140 TTCATGGTGCACCTTGGCGACATCGCTTAAAATGGATGATAAAGATGACAGATCCTTCTC F M V H L G D I A - N G - - R - Q I L L S W C T L A T S L K M D D K D D R S F S V H G A P W R H R L K W M I K M T D P S . . . . . . 52080 TAAAATGGATGTAAGAGCTGATAGCTCTTTCTCCAAATTCCCCAAAAGAGGTTTCATCAG - N G C K S - - L F L Q I P Q K R F H Q K M D V R A D S S F S K F P K R G F I R L K W M - E L I A L S P N S P K E V S S . . . . . . 52020 GAAATCTAAACAAGATTTAGATTTCGACATCTCTTTCAGTTTCCGCATAAGAGAATCCAG E I - T R F R F R H L F Q F P H K R I Q K S K Q D L D F D I S F S F R I R E S R G N L N K I - I S T S L S V S A - E N P . . . . . . 51960 AAAGCTCCATCCACCAACAGTGGGGAATTGCGATGGAGTGAATTTTAAGGATTTATAGTG K A P S T N S G E L R W S E F - G F I V K L H P P T V G N C D G V N F K D L - C E S S I H Q Q W G I A M E - I L R I Y S . . . . . . 51900 CGTCTCCACTTGTGCCTTCAGATCTTTAGTTTTCTCCCATATCTGTATTGAGCAAAGACT R L H L C L Q I F S F L P Y L Y - A K T V S T C A F R S L V F S H I C I E Q R L A S P L V P S D L - F S P I S V L S K D . . . . . . 51840 TATTTTGCTATTGTCATCTTTTTTTATAGAGCTAGGAAGAAGCTTTTGAATTACATATAG Y F A I V I F F Y R A R K K L L N Y I - I L L L S S F F I E L G R S F - I T Y R L F C Y C H L F L - S - E E A F E L H I . . . . . . 51780 AACATCACCCGCTATAGCTCCAACCTTTTCCATAACTTCATTCAACCAGTTACCATTAAT N I T R Y S S N L F H N F I Q P V T I N T S P A I A P T F S I T S F N Q L P L I E H H P L - L Q P F P - L H S T S Y H - . . . . . . 51720 TACATGATTTCCGACATCAGCATCAAGGAAAACCAACAAGAACTCTATTGCTATATCAAT Y M I S D I S I K E N Q Q E L Y C Y I N T - F P T S A S R K T N K N S I A I S I L H D F R H Q H Q G K P T R T L L L Y Q . . . . . . 51660 ATTTTGAGGAGAGTTATTATTAGGAAATTTCTCAAGCTTTTTGTTTCTAAGATACATCAA I L R R V I I R K F L K L F V S K I H Q F - G E L L L G N F S S F L F L R Y I N Y F E E S Y Y - E I S Q A F C F - D T S . . . . . . 51600 CAGACTATGGAGATGATGAGAAAATCCTTTTGGTAATTTCTTGTCCTTGAAAGTTCTTGA Q T M E M M R K S F W - F L V L E S S - R L W R - - E N P F G N F L S L K V L D T D Y G D D E K I L L V I S C P - K F L . . . . . . 51540 TTGAGTAAACTTGGAAGCCTTTAGTTCACCGAGAAAAATTTTCTTCATTTCCAGCTCTAC L S K L G S L - F T E K N F L H F Q L Y - V N L E A F S S P R K I F F I S S S T I E - T W K P L V H R E K F S S F P A L . . 51480 TAAGATAATCAAGA - D N Q K I I K L R - S R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-9_AGS-1_PPS_1 (52151 51903) (frame '2'; 246 bp, 82 residues) 1 RISCSWCTLA TSLKMDDKDD RSFSKMDVRA DSSFSKFPKR GFIRKSKQDL DFDISFSFRI 61 RESRKLHPPT VGNCDGVNFK DL- >C09HBa0109D11.1-_PGL-9_AGS-1_PPS_2 (51780 51565) (frame '1'; 213 bp, 71 residues) 1 NITRYSSNLF HNFIQPVTIN YMISDISIKE NQQELYCYIN ILRRVIIRKF LKLFVSKIHQ 61 QTMEMMRKSF W- AGS-2 (52373 54558,54637 54669,54765 55035) SCR (e 1.000 d 1.000 a 0.998,e 1.000 d 0.948 a 0.979,e 1.000) Exon 1 52373 54558 (2186 n); score: 1.000 Intron 1 54559 54636 ( 78 n); Pd: 1.000 Pa: 0.998 Exon 2 54637 54669 ( 33 n); score: 1.000 Intron 2 54670 54764 ( 95 n); Pd: 0.948 Pa: 0.979 Exon 3 54765 55035 ( 271 n); score: 1.000 PGS (52373 52877) SGN-E300728+ PGS (52875 53485) SGN-E371690+ PGS (52875 53306) SGN-E280658+ PGS (52875 53175) SGN-E370462+ PGS (52916 53365) SGN-E241579+ PGS (53085 53751) SGN-E398442+ PGS (53086 53583) SGN-E204998+ PGS (53633 54213) SGN-E302221+ PGS (53819 54379) SGN-E247913+ PGS (53989 54558,54637 54669,54765 54803) SGN-E368738+ PGS (53989 54501) SGN-E237622+ PGS (54066 54558,54637 54669,54765 55035) SGN-E548165- PGS (54075 54457) SGN-E203944+ PGS (54095 54558,54637 54669,54765 54781) SGN-E288588+ PGS (54224 54558,54637 54669,54765 55001) SGN-E251865- PGS (54408 54558,54637 54669,54765 55030) SGN-E300415+ 3-phase translation of AGS-2 (+strand): . . . . . . 52373 GACATATCAATCCAGTGACTGATGAGGATATAGTGGGTTTTGGGAATGACATAGAAAAAA D I S I Q - L M R I - W V L G M T - K K T Y Q S S D - - G Y S G F W E - H R K N H I N P V T D E D I V G F G N D I E K . . . . . . 52433 TGTTTCAGTATCTGATTAGAGGTACAAATGATCTAGACGTTGTCCCAATTGTAGGCATGG C F S I - L E V Q M I - T L S Q L - A W V S V S D - R Y K - S R R C P N C R H G M F Q Y L I R G T N D L D V V P I V G M . . . . . . 52493 GTGGACAAGGGAAAACGACAGTTGCTAGAAAGGTGTACAATAGTGACAACATTGTTTCTC V D K G K R Q L L E R C T I V T T L F L W T R E N D S C - K G V Q - - Q H C F S G G Q G K T T V A R K V Y N S D N I V S . . . . . . 52553 ATTTTGATGTTCGAGCATGGTGCATCGTTTCCCAAACATATAACCGGAGAAAGCTATTAC I L M F E H G A S F P K H I T G E S Y Y F - C S S M V H R F P N I - P E K A I T H F D V R A W C I V S Q T Y N R R K L L . . . . . . 52613 AAGACATTTTGAGTCAAGTTACCGGTTCCAAGGACAAGGGGTATGAGGATGATATCCTTG K T F - V K L P V P R T R G M R M I S L R H F E S S Y R F Q G Q G V - G - Y P C Q D I L S Q V T G S K D K G Y E D D I L . . . . . . 52673 CTGATGAGTTGAGGAAAAGCTTAATGGGCAAGAGATATCTCATTGTCTTGGATGATATGT L M S - G K A - W A R D I S L S W M I C - - V E E K L N G Q E I S H C L G - Y V A D E L R K S L M G K R Y L I V L D D M . . . . . . 52733 GGGATTGTATGGCATGGGATGACTTAAGGCTTTCCTTTCCAGATTCCGGAAATAGAAGCA G I V W H G M T - G F P F Q I P E I E A G L Y G M G - L K A F L S R F R K - K Q W D C M A W D D L R L S F P D S G N R S . . . . . . 52793 GAATAGTAGTAACAACTCGACTTGAGAAAGTGGGCGAACAAGTCAAGTGCCATACTGATC E - - - Q L D L R K W A N K S S A I L I N S S N N S T - E S G R T S Q V P Y - S R I V V T T R L E K V G E Q V K C H T D . . . . . . 52853 CTTATTCTCTTCCGTTCCTCACAAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGT L I L F R S S Q K K R V V N C C R K K C L F S S V P H K R R E L - I V A E K S V P Y S L P F L T K E E S C E L L Q K K V . . . . . . 52913 TTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAAT F K R K I S R L N Y K M - V E Q L Q K N S K G R F P A - T T R C E S S S C R K M F Q K E D F P P E L Q D V S R A V A E K . . . . . . 52973 GCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGG A K D C P - W L S W - L E - S K K G K W Q R T A P S G C L G S W N N Q K K E N G C K G L P L V V V L V A G I I K K R K M . . . . . . 53033 AAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGG K N L G G M R - K I L Y L T T L I V S R R I L V E - G E R F F I - P P - S - V G E E S W W N E V K D S L F D H L N R E S . . . . . . 53093 AAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGC K N I V F Q L C S - V T I T - P T V - S R I - S F N Y A V E L L - L N R L F K A E E Y S L S T M Q L S Y Y N L T D C L K . . . . . . 53153 CTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGA L V F F I W G C F R R M Q - F E Y L N - L S S L Y G D V S G G C N N S S I - I D P C L L Y M G M F Q E D A I I R V S E L . . . . . . 53213 TAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGG - V Y G L R K D L C R A L N L G D C - W K S M D C G R I C A E H - I W E I V D G I S L W I A E G F V Q S I E S G R L L M . . . . . . 53273 AAGAGGCAGCTGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAA K R Q L K V T - W I S F R V T W - W F Q R G S - R L L D G S H S E - R G N G F K E E A A E G Y L M D L I Q S N V V M V S . . . . . . 53333 ATAGAAGGTATAATGGTAAGGTCAAATACTGTCAGGTTCATGACGTAGTGCTTCACTTTT I E G I M V R S N T V R F M T - C F T F - K V - W - G Q I L S G S - R S A S L L N R R Y N G K V K Y C Q V H D V V L H F . . . . . . 53393 GCTTGGAGAAGAGTCTAGAAGAAAAGTTTATGTTGGCAGTGAAGGGGCATGATAGCCAGT A W R R V - K K S L C W Q - R G M I A S L G E E S R R K V Y V G S E G A - - P V C L E K S L E E K F M L A V K G H D S Q . . . . . . 53453 TTCAACCTTTTGAATGGAAGGAAAACCGAGTGAGCTTCAGTTTCAGTAAAGAGCTTTCCA F N L L N G R K T E - A S V S V K S F P S T F - M E G K P S E L Q F Q - R A F Q F Q P F E W K E N R V S F S F S K E L S . . . . . . 53513 AGTTTGCATCTCTAGGATCCAAAACACGGAAGTCTTTCCACCAACACTTGAGGTCACTGA S L H L - D P K H G S L S T N T - G H - V C I S R I Q N T E V F P P T L E V T D K F A S L G S K T R K S F H Q H L R S L . . . . . . 53573 TAACGATAAATAACCTAGAGTTAATTGATGGGATTCCCTTCTGTCAGATTCTTAAATTGC - R - I T - S - L M G F P S V R F L N C N D K - P R V N - W D S L L S D S - I A I T I N N L E L I D G I P F C Q I L K L . . . . . . 53633 GACTTCTTAAGGTCTTGATTTTGACTTCCCATGAAGTGGATTATTTGTCGTCAGCTACAT D F L R S - F - L P M K W I I C R Q L H T S - G L D F D F P - S G L F V V S Y I R L L K V L I L T S H E V D Y L S S A T . . . . . . 53693 TCAAACCTCTAAATCACCTGAAATACCTCGCAGTTTGTGCAAATAAGTTTTACTTTCATC S N L - I T - N T S Q F V Q I S F T F I Q T S K S P E I P R S L C K - V L L S S F K P L N H L K Y L A V C A N K F Y F H . . . . . . 53753 CAGAATCACATCTGCCCAATCTTGAAACTTTAATCGTAAATAATTGGGAAAATGAAGTAG Q N H I C P I L K L - S - I I G K M K - R I T S A Q S - N F N R K - L G K - S R P E S H L P N L E T L I V N N W E N E V . . . . . . 53813 AGTTACCAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTA S Y Q R L F G R W K N - G M L R F G M L V T S V F L G D G K I K A C - D L G C - E L P A S F W E M E K L R H V K I W D A . . . . . . 53873 AATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTAC N L I W K R I I R D P P N W K I - G Y Y I - F G R G - S G I L R I G K F E D I T K F D L E E D N Q G S S E L E N L R I L . . . . . . 53933 AGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTC S M - N F Q L M E G I G W I C Y Q G G V V C K I S N - W K G - G G Y V I K E V S Q Y V K F P I D G R D R V D M L S R R C . . . . . . 53993 CAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATT Q I F K N C T S T W N I G A V I I R Q I K S S K T A H Q L G I S G Q - - F G R F P N L Q K L H I N L E Y R G S N N S A D . . . . . . 54053 TATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGA Y F V S H - R I L L S F K I F A - L L R I L S H I R E S Y S A S K S S P N C - E L F C L T L E N L T Q L Q N L R L T V E . . . . . . 54113 GGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTG G P T L Y L G Y N C L Q I - T S W Y - V V Q H C I W V T I A F K F K Q V G T K W R S N I V S G L Q L P S N L N K L V L S . . . . . . 54173 GGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCC G L I S K T - V P S L Q D Y Q A W S I S G S Y R K P E F L H C R T T K P G V S P G A H I E N L S S F I A G L P S L E Y L . . . . . . 54233 AATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGT N F V T P M N L F K S E I G A L E V S R I L - P L - I C S N Q R L V P W R Y H V Q F C D P Y E S V Q I R D W C L G G I T . . . . . . 54293 TCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAG S L N L S C - N W - T Y R S Q G G M P Q P - T - V V E T G E L T D L K V G C L R F P K L K L L K L V N L P I S R W D A S . . . . . . 54353 AGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGA R N R F P S S K H L L - K G V T T S R R G I V S P A R N T C Y K K V - P P Q G D E E S F P Q L E T L V I K R C N H L K E . . . . . . 54413 TCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGA S P L A L L I F Q H - S R L S - L G A R P P - L C - Y S N T E A D - V D - V R E I P L S F A D I P T L K Q I K L I R C E . . . . . . 54473 ACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAA T N L S R I Q L W R L R K T L K R M K E R I S Q G F S C G D - E R R - R E - R K N E S L K D S A V E I K K D V E E N E G . . . : . . . : 54533 ACGACCGTATTGACCTCATTATCAAA : GGATGGTAGGGAATATAATTCGAGATGAAACAT : C T T V L T S L S K : D G R E Y N S R - N I : R P Y - P H Y Q : R M V G N I I R D E T : S N D R I D L I I K : G W - G I - F E M K H : . . . . . . 54766 AAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACA K I T D R V A G E - Q G K K L S L K F T K S Q T E W P G N N K A R S S L S S S Q Q N H R Q S G R G I T R Q E A L S Q V H . . . . . . 54826 AATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGA N F R S I K N S K V L I V S - I - A H - I F A A L K T Q R F - - C L R Y K L I D K F S Q H - K L K G F D S V L D I S S L . . . . . . 54886 CATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAAT H D T F A V H S K F - S L L L L N Y C N M I L L L C T Q N F E V C Y C - I I V I T - Y F C C A L K I L K F V I V E L L - . . . . . . 54946 TTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATG L W H L L K N F N H K H F F F N K S N M C G T Y - K I L I T N I S F L I K V T - F V A P I E K F - S Q T F L F - - K - H . . . 55006 AATGATGGTTTGCTCATTCATCAAAGTGTA N D G L L I H Q S V M M V C S F I K V E - W F A H S S K C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-9_AGS-2_PPS_1 (52375 54558,54637 54645) (frame '0'; 2190 bp, 730 residues) 1 HINPVTDEDI VGFGNDIEKM FQYLIRGTND LDVVPIVGMG GQGKTTVARK VYNSDNIVSH 61 FDVRAWCIVS QTYNRRKLLQ DILSQVTGSK DKGYEDDILA DELRKSLMGK RYLIVLDDMW 121 DCMAWDDLRL SFPDSGNRSR IVVTTRLEKV GEQVKCHTDP YSLPFLTKEE SCELLQKKVF 181 QKEDFPPELQ DVSRAVAEKC KGLPLVVVLV AGIIKKRKME ESWWNEVKDS LFDHLNRESE 241 EYSLSTMQLS YYNLTDCLKP CLLYMGMFQE DAIIRVSELI SLWIAEGFVQ SIESGRLLME 301 EAAEGYLMDL IQSNVVMVSN RRYNGKVKYC QVHDVVLHFC LEKSLEEKFM LAVKGHDSQF 361 QPFEWKENRV SFSFSKELSK FASLGSKTRK SFHQHLRSLI TINNLELIDG IPFCQILKLR 421 LLKVLILTSH EVDYLSSATF KPLNHLKYLA VCANKFYFHP ESHLPNLETL IVNNWENEVE 481 LPASFWEMEK LRHVKIWDAK FDLEEDNQGS SELENLRILQ YVKFPIDGRD RVDMLSRRCP 541 NLQKLHINLE YRGSNNSADL FCLTLENLTQ LQNLRLTVER SNIVSGLQLP SNLNKLVLSG 601 AHIENLSSFI AGLPSLEYLQ FCDPYESVQI RDWCLGGITF PKLKLLKLVN LPISRWDASE 661 ESFPQLETLV IKRCNHLKEI PLSFADIPTL KQIKLIRCEN ESLKDSAVEI KKDVEENEGN 721 DRIDLIIKGW - AGS-3 (54241 54558,54637 55030) SCR (e 0.997 d 1.000 a 0.998,e 0.990) Exon 1 54241 54558 ( 318 n); score: 0.997 Intron 1 54559 54636 ( 78 n); Pd: 1.000 Pa: 0.998 Exon 2 54637 55030 ( 394 n); score: 0.990 PGS (54241 54558,54637 55030) SGN-E371689- PGS (54675 55030) SGN-E370461- 3-phase translation of AGS-3 (+strand): . . . . . . 54241 GACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAA D P Y E S V Q I R D W C L G G I T F P K T P M N L F K S E I G A L E V S R S L N P L - I C S N Q R L V P W R Y H V P - . . . . . . 54301 CTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCG L K L L K L V N L P I S R W D A S E E S L S C - N W - T Y R S Q G G M P Q R N R T - V V E T G E L T D L K V G C L R G I . . . . . . 54361 TTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTT F P Q L E T L V I K R C N H L K E I P L F P S S K H L L - K G V T T S R R S P L V S P A R N T C Y K K V - P P Q G D P P . . . . . . 54421 AGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCT S F A D I P T L K Q I K L I R C E N E S A L L I F Q H - S R L S - L G A R T N L - L C - Y S N T E A D - V D - V R E R I . . . . . . 54481 CTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGT L K D S A V E I K K D V E E N E G N D R S R I Q L W R L R K T L K R M K E T T V S Q G F S C G D - E R R - R E - R K R P . . : . . . . 54541 ATTGACCTCATTATCAAA : GGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCC I D L I I K : G W - G I - F E M K H V R A L T S L S K : D G R E Y N S R - N M Y V P Y - P H Y Q : R M V G N I I R D E T C T C . . . . . . 54679 TGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATT C N H N N A I Y S F F - F D A C F C L I V I T T M L Y I P S S N L T L A F A - L L - S Q Q C Y I F L L L I - R L L L L N . . . . . . 54739 GCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAA A P C - F Q N C S K I T D R V A G E - Q L H V D F K I A A K S Q T E W P G N N K C S M L I S K L Q Q N H R Q S G R G I T . . . . . . 54799 GGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTG G K K L S L K F T N F R S I K N S K V L A R S S L S S S Q I F A A L K T Q R F - R Q E A L S Q V H K F S Q H - K L K G F . . . . . . 54859 ATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGA I V S - I - A H - H D T F A V H S K F - - C L R Y K L I D M I L L L C T Q N F E D S V L D I S S L T - Y F C C A L K I L . . . . . . 54919 AGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAA S L L L L N Y C N L W H L L K N F N H K V C Y C - I I V I C G T Y - K I L I T N K F V I V E L L - F V A P I E K F - S Q . . . . . . 54979 CATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAA H F F F N K S N M N D G L L I H Q I S F L I K V T - M M V C S F I K T F L F - - K - H E - W F A H S S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-9_AGS-3_PPS_1 (54241 54558,54637 54645) (frame '1'; 324 bp, 108 residues) 1 DPYESVQIRD WCLGGITFPK LKLLKLVNLP ISRWDASEES FPQLETLVIK RCNHLKEIPL 61 SFADIPTLKQ IKLIRCENES LKDSAVEIKK DVEENEGNDR IDLIIKGW- PGL 10 (+ strand): 58521 61784 AGS-1 (58521 59305) SCR (e 0.810) Exon 1 58521 59305 ( 785 n); score: 0.810 PGS (58521 59305) SGN-E539103+ PGS (58521 58896) SGN-E280953+ PGS (58805 58961) SGN-E258561+ 3-phase translation of AGS-1 (+strand): . . . . . . 58521 TTGATTGTGTTAGTGGAGCAGGAAATGAAGAAGATTTTTCTTAGTGAATTAAAGGCTTCA L I V L V E Q E M K K I F L S E L K A S - L C - W S R K - R R F F L V N - R L Q D C V S G A G N E E D F S - - I K G F . . . . . . 58581 AAGTTCACCCAATCAAAAACATTCAAGGACAAGAAATTACCAAAAGGATTTTCACATCAT K F T Q S K T F K D K K L P K G F S H H S S P N Q K H S R T R N Y Q K D F H I I K V H P I K N I Q G Q E I T K R I F T S . . . . . . 58641 CTCAACAGTCTGTTGGTGTATCTCAGAAACACAAAGCTCAAGAACTTTCCTGATAATGTG L N S L L V Y L R N T K L K N F P D N V S T V C W C I S E T Q S S R T F L I M C S Q Q S V G V S Q K H K A Q E L S - - C . . . . . . 58701 TCTGCTCAAAATATTGGTCTGTCAATAGAGCTTCTGTTGTTTTTTCTTGATGCTGATCTT S A Q N I G L S I E L L L F F L D A D L L L K I L V C Q - S F C C F F L M L I F V C S K Y W S V N R A S V V F S - C - S . . . . . . 58761 TCAAATCATGTTATTAGTCGAAACTGGTTGAATGAGATCTTGGAAAACGTGGCAACCATA S N H V I S R N W L N E I L E N V A T I Q I M L L V E T G - M R S W K T W Q P - F K S C Y - S K L V E - D L G K R G N H . . . . . . 58821 GCGGGTGATGTTCTATACGTAATTCAAAAGCTTCTTCCTAGATCAATAAGCAAAGACGAT A G D V L Y V I Q K L L P R S I S K D D R V M F Y T - F K S F F L D Q - A K T M S G - C S I R N S K A S S - I N K Q R R . . . . . . 58881 GACACTAGCAAGATAAACATTTACTCGATGCAGGTATTGGAGAAAACTAAAGATCTGAAG D T S K I N I Y S M Q V L E K T K D L K T L A R - T F T R C R Y W R K L K I - R - H - Q D K H L L D A G I G E N - R S E . . . . . . 58941 GCACAAGTAGAGACGTACTACAAATCCTTAATATTTACTCCATCTCAGTTCCCTACCTCT A Q V E T Y Y K S L I F T P S Q F P T S H K - R R T T N P - Y L L H L S S L P L G T S R D V L Q I L N I Y S I S V P Y L . . . . . . 59001 GGTGGTTTGACCTTTATGGATTCTCTTTTAAGGAAATTAAATGAGATGTCAAGATCTAAA G G L T F M D S L L R K L N E M S R S K V V - P L W I L F - G N - M R C Q D L N W W F D L Y G F S F K E I K - D V K I - . . . . . . 59061 TATGGTTTAGATTTGCTGATGAAACCTATTTACTGTAATTTGGAGAAAGAGCAATCAACT Y G L D L L M K P I Y C N L E K E Q S T M V - I C - - N L F T V I W R K S N Q L I W F R F A D E T Y L L - F G E R A I N . . . . . . 59121 CTTATATCCAATTTAGAGAAGGAGTTGTCATCTTTATCATCCATTTTCAGAGATGTCACA L I S N L E K E L S S L S S I F R D V T L Y P I - R R S C H L Y H P F S E M S Q S Y I Q F R E G V V I F I I H F Q R C H . . . . . . 59181 AAGGTGCACCATGAACATAAAGATCTTCAAAGACGTACCATCAATTTGGCATATGAAGCT K V H H E H K D L Q R R T I N L A Y E A R C T M N I K I F K D V P S I W H M K L K G A P - T - R S S K T Y H Q F G I - S . . . . . . 59241 GGGGTTTCCATTGACTCTATTTGTGCTAAATATAATGTTTTTTGGCATTGTTTTTGCTCA G V S I D S I C A K Y N V F W H C F C S G F P L T L F V L N I M F F G I V F A H W G F H - L Y L C - I - C F L A L F L L . 59301 CTTCC L F T S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-10_AGS-1_PPS_1 (58521 59303) (frame '1'; 783 bp, 261 residues) 1 LIVLVEQEMK KIFLSELKAS KFTQSKTFKD KKLPKGFSHH LNSLLVYLRN TKLKNFPDNV 61 SAQNIGLSIE LLLFFLDADL SNHVISRNWL NEILENVATI AGDVLYVIQK LLPRSISKDD 121 DTSKINIYSM QVLEKTKDLK AQVETYYKSL IFTPSQFPTS GGLTFMDSLL RKLNEMSRSK 181 YGLDLLMKPI YCNLEKEQST LISNLEKELS SLSSIFRDVT KVHHEHKDLQ RRTINLAYEA 241 GVSIDSICAK YNVFWHCFCS L 3-phase translation of AGS-1 (-strand): . . . . . . 59305 GGAAGTGAGCAAAAACAATGCCAAAAAACATTATATTTAGCACAAATAGAGTCAATGGAA G S E Q K Q C Q K T L Y L A Q I E S M E E V S K N N A K K H Y I - H K - S Q W K K - A K T M P K N I I F S T N R V N G . . . . . . 59245 ACCCCAGCTTCATATGCCAAATTGATGGTACGTCTTTGAAGATCTTTATGTTCATGGTGC T P A S Y A K L M V R L - R S L C S W C P Q L H M P N - W Y V F E D L Y V H G A N P S F I C Q I D G T S L K I F M F M V . . . . . . 59185 ACCTTTGTGACATCTCTGAAAATGGATGATAAAGATGACAACTCCTTCTCTAAATTGGAT T F V T S L K M D D K D D N S F S K L D P L - H L - K W M I K M T T P S L N W I H L C D I S E N G - - R - Q L L L - I G . . . . . . 59125 ATAAGAGTTGATTGCTCTTTCTCCAAATTACAGTAAATAGGTTTCATCAGCAAATCTAAA I R V D C S F S K L Q - I G F I S K S K - E L I A L S P N Y S K - V S S A N L N Y K S - L L F L Q I T V N R F H Q Q I - . . . . . . 59065 CCATATTTAGATCTTGACATCTCATTTAATTTCCTTAAAAGAGAATCCATAAAGGTCAAA P Y L D L D I S F N F L K R E S I K V K H I - I L T S H L I S L K E N P - R S N T I F R S - H L I - F P - K R I H K G Q . . . . . . 59005 CCACCAGAGGTAGGGAACTGAGATGGAGTAAATATTAAGGATTTGTAGTACGTCTCTACT P P E V G N - D G V N I K D L - Y V S T H Q R - G T E M E - I L R I C S T S L L T T R G R E L R W S K Y - G F V V R L Y . . . . . . 58945 TGTGCCTTCAGATCTTTAGTTTTCTCCAATACCTGCATCGAGTAAATGTTTATCTTGCTA C A F R S L V F S N T C I E - M F I L L V P S D L - F S P I P A S S K C L S C - L C L Q I F S F L Q Y L H R V N V Y L A . . . . . . 58885 GTGTCATCGTCTTTGCTTATTGATCTAGGAAGAAGCTTTTGAATTACGTATAGAACATCA V S S S L L I D L G R S F - I T Y R T S C H R L C L L I - E E A F E L R I E H H S V I V F A Y - S R K K L L N Y V - N I . . . . . . 58825 CCCGCTATGGTTGCCACGTTTTCCAAGATCTCATTCAACCAGTTTCGACTAATAACATGA P A M V A T F S K I S F N Q F R L I T - P L W L P R F P R S H S T S F D - - H D T R Y G C H V F Q D L I Q P V S T N N M . . . . . . 58765 TTTGAAAGATCAGCATCAAGAAAAAACAACAGAAGCTCTATTGACAGACCAATATTTTGA F E R S A S R K N N R S S I D R P I F - L K D Q H Q E K T T E A L L T D Q Y F E I - K I S I K K K Q Q K L Y - Q T N I L . . . . . . 58705 GCAGACACATTATCAGGAAAGTTCTTGAGCTTTGTGTTTCTGAGATACACCAACAGACTG A D T L S G K F L S F V F L R Y T N R L Q T H Y Q E S S - A L C F - D T P T D C S R H I I R K V L E L C V S E I H Q Q T . . . . . . 58645 TTGAGATGATGTGAAAATCCTTTTGGTAATTTCTTGTCCTTGAATGTTTTTGATTGGGTG L R - C E N P F G N F L S L N V F D W V - D D V K I L L V I S C P - M F L I G - V E M M - K S F W - F L V L E C F - L G . . . . . . 58585 AACTTTGAAGCCTTTAATTCACTAAGAAAAATCTTCTTCATTTCCTGCTCCACTAACACA N F E A F N S L R K I F F I S C S T N T T L K P L I H - E K S S S F P A P L T Q E L - S L - F T K K N L L H F L L H - H . 58525 ATCAA I S N Q Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (59421 61538,61611 61717,61751 61784) SCR (e 0.865 d 0.999 a 0.832,e 0.607 d 0.000 a 0.000,e 0.735) Exon 1 59421 61538 (2118 n); score: 0.865 Intron 1 61539 61610 ( 72 n); Pd: 0.999 Pa: 0.832 Exon 2 61611 61717 ( 107 n); score: 0.607 Intron 2 61718 61750 ( 33 n); Pd: 0.000 Pa: 0.000 Exon 3 61751 61784 ( 34 n); score: 0.735 PGS (59421 59923) SGN-E300728+ PGS (59921 60507) SGN-E371690+ PGS (59921 60302) SGN-E280658+ PGS (59921 60221) SGN-E370462+ PGS (60240 60763) SGN-E245684+ PGS (60643 61199) SGN-E302221+ PGS (60827 61358) SGN-E247913+ PGS (61042 61538) SGN-E368738+ PGS (61042 61478) SGN-E237622+ PGS (61052 61538) SGN-E548165- PGS (61061 61437) SGN-E203944+ PGS (61067 61538) SGN-E395395- PGS (61081 61538) SGN-E288588+ PGS (61251 61538) SGN-E251865- PGS (61251 61538,61611 61717,61751 61784) SGN-E371689- 3-phase translation of AGS-2 (+strand): . . . . . . 59421 CATAGCAATCCCATTACTGATGAGGAGATAGTGGGTTTTGGGATTGACAAAGAAAAAATA H S N P I T D E E I V G F G I D K E K I I A I P L L M R R - W V L G L T K K K - - Q S H Y - - G D S G F W D - Q R K N . . . . . . 59481 ATTCAGTGTCTGATTAGAGGTACAAATGATCTAGACGTTGTCCCAATTGTAGGCATGGGG I Q C L I R G T N D L D V V P I V G M G F S V - L E V Q M I - T L S Q L - A W G N S V S D - R Y K - S R R C P N C R H G . . . . . . 59541 GGACAAGGGAAAACCACAATTGCTAGAAAGGTGTACAATAGTGACAACATTGTTTCTCAT G Q G K T T I A R K V Y N S D N I V S H D K G K P Q L L E R C T I V T T L F L I G T R E N H N C - K G V Q - - Q H C F S . . . . . . 59601 TTTGATGTTCGAGCATGGTGCATCGTTTCCCAAACATATAACCGGAGAAAGCTATTACAA F D V R A W C I V S Q T Y N R R K L L Q L M F E H G A S F P K H I T G E S Y Y K F - C S S M V H R F P N I - P E K A I T . . . . . . 59661 GAGATTTTGAGTCAAGTTACCGGTTCCAAGGACAAGGGATATGAGGATGATATCCTTGCT E I L S Q V T G S K D K G Y E D D I L A R F - V K L P V P R T R D M R M I S L L R D F E S S Y R F Q G Q G I - G - Y P C . . . . . . 59721 GATGAGTTGAGGAAAAGCTTAATGGGAAAGAGATATCTCATTGTCTTGGATGATATGTGG D E L R K S L M G K R Y L I V L D D M W M S - G K A - W E R D I S L S W M I C G - - V E E K L N G K E I S H C L G - Y V . . . . . . 59781 GATTGTATGGCATGGGATGACTTAAGGCTTTCCTTTCCAGATTTTGGAAATAGAAGCAGA D C M A W D D L R L S F P D F G N R S R I V W H G M T - G F P F Q I L E I E A E G L Y G M G - L K A F L S R F W K - K Q . . . . . . 59841 ATAGTAGTAACAACTCGACTTGAGAAAGTGGGCGAACAAGTCAAGTTCCATACTGATCCT I V V T T R L E K V G E Q V K F H T D P - - - Q L D L R K W A N K S S S I L I L N S S N N S T - E S G R T S Q V P Y - S . . . . . . 59901 TATTCTCTTCCATTCCTCACAAAAGAAGAGAGTTGCAAATTGTTGCAGAAAAAAGTTTTT Y S L P F L T K E E S C K L L Q K K V F I L F H S S Q K K R V A N C C R K K F F L F S S I P H K R R E L Q I V A E K S F . . . . . . 59961 CAAAAGGAAGATTGTCCGCCTGAACTACAAGATGTAAGTCAAGTAGTTGCAGAAAAATGC Q K E D C P P E L Q D V S Q V V A E K C K R K I V R L N Y K M - V K - L Q K N A S K G R L S A - T T R C K S S S C R K M . . . . . . 60021 AAGGGACTGCCTCTAGTGATTGTCTTGGTAGCTGGAATAATCAAAACAAGGAAACTGGAA K G L P L V I V L V A G I I K T R K L E R D C L - - L S W - L E - S K Q G N W K Q G T A S S D C L G S W N N Q N K E T G . . . . . . 60081 GAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACTATCTTGATTGTCATTCAGAG E S W W N E V K D S L F D Y L D C H S E N L G G M R - K I L Y L T I L I V I Q S R I L V E - G E R F F I - L S - L S F R . . . . . . 60141 CAATATAGTCGGGCTACTATGCAGTTGAGTTTTGATAACTTAGCTGATTGTTTAAAACCT Q Y S R A T M Q L S F D N L A D C L K P N I V G L L C S - V L I T - L I V - N L A I - S G Y Y A V E F - - L S - L F K T . . . . . . 60201 TGTCTTCTTTATATGGGGATGTTTCCGGAGGATGCAAGCATTAACGTGTCTGCATTGTTA C L L Y M G M F P E D A S I N V S A L L V F F I W G C F R R M Q A L T C L H C - L S S L Y G D V S G G C K H - R V C I V . . . . . . 60261 AGTTTATGGTTAGCGGAAGACTTCGTTCAGAACATTAAATCTGCTGAAGATTACTTGATG S L W L A E D F V Q N I K S A E D Y L M V Y G - R K T S F R T L N L L K I T - - K F M V S G R L R S E H - I C - R L L D . . . . . . 60321 AATCTCATTAGCAGTAACGTGGTAATGGTTTCAAAGAAAGAATATAATGGCAAGATCAAA N L I S S N V V M V S K K E Y N G K I K I S L A V T W - W F Q R K N I M A R S N E S H - Q - R G N G F K E R I - W Q D Q . . . . . . 60381 TACTGTGAGGTTCATGATGTAGTGCTTCACTTTTGCTTGGAGAAGAGTAGAGAAGAAAAT Y C E V H D V V L H F C L E K S R E E N T V R F M M - C F T F A W R R V E K K I I L - G S - C S A S L L L G E E - R R K . . . . . . 60441 TTTATGTTGGTTGCGAAGGGAAATCATAGTCAATTTCAATCTTTTGTTTGGAAGCAAAGT F M L V A K G N H S Q F Q S F V W K Q S L C W L R R E I I V N F N L L F G S K V F Y V G C E G K S - S I S I F C L E A K . . . . . . 60501 CGAGTGAGCTTCAATTTGATTGAAGAGAATTCCAAGTTTGCATCCAAAACAAGGAAGTGT R V S F N L I E E N S K F A S K T R K C E - A S I - L K R I P S L H P K Q G S V S S E L Q F D - R E F Q V C I Q N K E V . . . . . . 60561 TCCCATCAACCGTTGAGGTCACTGATAACGAACGGAGCATCTTTTTATATAATGTCCTTA S H Q P L R S L I T N G A S F Y I M S L P I N R - G H - - R T E H L F I - C P - F P S T V E V T D N E R S I F L Y N V L . . . . . . 60621 AGTTCTTGGATTCATAATTTGCGACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTT S S W I H N L R L L K V L V L S S Y E V V L G F I I C D F L R S W F - V P M K L K F L D S - F A T S - G L G F E F L - S . . . . . . 60681 GACTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGG D Y V N S A T L K P L N Y L K Y L G V R T M - I Q L H - N H L I T - S T S E - G - L C E F S Y T E T T - L P E V P R S K . . . . . . 60741 GCAACTACGTTCTATTTTGATCGAGAATCACATCTGCCCCATCTTGAAACTTTAATTGTG A T T F Y F D R E S H L P H L E T L I V Q L R S I L I E N H I C P I L K L - L - G N Y V L F - S R I T S A P S - N F N C . . . . . . 60801 AAGAATGATAGATCAGTTATGTTACGAGGGTGTTTTTGGGAAATGGAACAATTAAGGCAT K N D R S V M L R G C F W E M E Q L R H R M I D Q L C Y E G V F G K W N N - G M E E - - I S Y V T R V F L G N G T I K A . . . . . . 60861 GTTGAGATCAATGATGCTGAATTTGATAAGCAGGGGCTCTTTGAAGGATCCTCTAAATTG V E I N D A E F D K Q G L F E G S S K L L R S M M L N L I S R G S L K D P L N W C - D Q - C - I - - A G A L - R I L - I . . . . . . 60921 GAAAATTTGAGGATATTAAAGAACATTGTTGGATTTCCAATTGATAGGGCGGATGTGTTA E N L R I L K N I V G F P I D R A D V L K I - G Y - R T L L D F Q L I G R M C Y G K F E D I K E H C W I S N - - G G C V . . . . . . 60981 TCAAGGAGGTGTCCTAATCTTCAACAACTTCAAATCGAATTTGGATCTTTTGCAGAACCT S R R C P N L Q Q L Q I E F G S F A E P Q G G V L I F N N F K S N L D L L Q N L I K E V S - S S T T S N R I W I F C R T . . . . . . 61041 CTTTGGCTCACATTGGAGAATCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTG L W L T L E N L T Q L Q I L D L S F R L F G S H W R I L P S F K Y L T F P L G C S L A H I G E S Y P A S N T - P F L - V . . . . . . 61101 TTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGAC F H M L S G L Q L P S N L K M L V L R D S T C Y L G Y N C L Q I - R C W Y - E T V P H A I W V T I A F K F K D V G T K R . . . . . . 61161 GCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTACCAAGCCTGGAGTATCTTCAA A D L E N L T S F F A G L P S L E Y L Q L I - K T - L P S L L D Y Q A W S I F N R - S R K P N F L L C W T T K P G V S S . . . . . . 61221 TTAACAAATATGTATTTTCCTCAATCAGAATGGTGCCTTGGAGATATCACGTTTCATAAA L T N M Y F P Q S E W C L G D I T F H K - Q I C I F L N Q N G A L E I S R F I N I N K Y V F S S I R M V P W R Y H V S - . . . . . . 61281 CTCAAGTTGTTGAAACTGGTGCAGTTAGATATCTCAAGGTGGGATGTCTCGGAGGAATCC L K L L K L V Q L D I S R W D V S E E S S S C - N W C S - I S Q G G M S R R N P T Q V V E T G A V R Y L K V G C L G G I . . . . . . 61341 TTTCCCCTGCTTGAAACAATCGTTATAAGATGGTGCCATAACCTCGAGGAAATCCCCATT F P L L E T I V I R W C H N L E E I P I F P C L K Q S L - D G A I T S R K S P L L S P A - N N R Y K M V P - P R G N P H . . . . . . 61401 AGCTTTGCAGATGTTCCAACACTGAAACAGATTAAGTTGGTTCACTGCAAGAACAAATCT S F A D V P T L K Q I K L V H C K N K S A L Q M F Q H - N R L S W F T A R T N L - L C R C S N T E T D - V G S L Q E Q I . . . . . . 61461 CTGGAGGATTCAGCTGTGAGGATTAAGAAAGATGTTGAAGAGAATGAAGGAAACGACCGT L E D S A V R I K K D V E E N E G N D R W R I Q L - G L R K M L K R M K E T T V S G G F S C E D - E R C - R E - R K R P . . : . . . . 61521 ATTGACCTCATTATCAAA : AAATAGTAGGGTCGTCCGGAAGCTGTGAGTCAATTATGTGCC I D L I I K : K - - G R P E A V S Q L C A L T S L S K : N S R V V R K L - V N Y V P Y - P H Y Q : K I V G S S G S C E S I M C . . . . . . 61653 TGTAATTACAACAATGGTAAATATGGTTTCTGTTTTATTTTTTTCGTGTTCCTTTCTCTA C N Y N N G K Y G F C F I F F V F L S L V I T T M V N M V S V L F F S C S F L - L - L Q Q W - I W F L F Y F F R V P F S . : . . . 61713 ATCTA : CTCAAATTAAATTTGATAATTGCAGCAAAAGTAC I Y : S N - I - - L Q Q K Y S : T Q I K F D N C S K S N L : L K L N L I I A A K V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-10_AGS-2_PPS_1 (59421 61538,61611 61616) (frame '1'; 2121 bp, 707 residues) 1 HSNPITDEEI VGFGIDKEKI IQCLIRGTND LDVVPIVGMG GQGKTTIARK VYNSDNIVSH 61 FDVRAWCIVS QTYNRRKLLQ EILSQVTGSK DKGYEDDILA DELRKSLMGK RYLIVLDDMW 121 DCMAWDDLRL SFPDFGNRSR IVVTTRLEKV GEQVKFHTDP YSLPFLTKEE SCKLLQKKVF 181 QKEDCPPELQ DVSQVVAEKC KGLPLVIVLV AGIIKTRKLE ESWWNEVKDS LFDYLDCHSE 241 QYSRATMQLS FDNLADCLKP CLLYMGMFPE DASINVSALL SLWLAEDFVQ NIKSAEDYLM 301 NLISSNVVMV SKKEYNGKIK YCEVHDVVLH FCLEKSREEN FMLVAKGNHS QFQSFVWKQS 361 RVSFNLIEEN SKFASKTRKC SHQPLRSLIT NGASFYIMSL SSWIHNLRLL KVLVLSSYEV 421 DYVNSATLKP LNYLKYLGVR ATTFYFDRES HLPHLETLIV KNDRSVMLRG CFWEMEQLRH 481 VEINDAEFDK QGLFEGSSKL ENLRILKNIV GFPIDRADVL SRRCPNLQQL QIEFGSFAEP 541 LWLTLENLTQ LQILDLSFRL FHMLSGLQLP SNLKMLVLRD ADLENLTSFF AGLPSLEYLQ 601 LTNMYFPQSE WCLGDITFHK LKLLKLVQLD ISRWDVSEES FPLLETIVIR WCHNLEEIPI 661 SFADVPTLKQ IKLVHCKNKS LEDSAVRIKK DVEENEGNDR IDLIIKK- PGL 11 (- strand): 69355 66380 AGS-1 (68617 68450,67048 66380) SCR (e 1.000 d 1.000 a 0.956,e 1.000) Exon 1 68617 68450 ( 168 n); score: 1.000 Intron 1 68449 67049 (1401 n); Pd: 1.000 Pa: 0.956 Exon 2 67048 66380 ( 669 n); score: 1.000 PGS (67048 66380) SGN-E374785- PGS (68617 68450,67048 66487) SGN-E213674+ 3-phase translation of AGS-1 (-strand): . . . . . . 68617 AAAAAGTGGTCATTTTATAAATAATTCATTGGAGATTGAAAGTACTATTAAGTGGTTAGA K K W S F Y K - F I G D - K Y Y - V V R K S G H F I N N S L E I E S T I K W L D K V V I L - I I H W R L K V L L S G - . . . . . . 68557 TGATCAACAGGATTCCTCTGTAGTGTTTTTGTGTTTTGGTAGTATGGGAAGTTTTGAAGC - S T G F L C S V F V F W - Y G K F - S D Q Q D S S V V F L C F G S M G S F E A M I N R I P L - C F C V L V V W E V L K . . . . . : . 68497 AGAACAGGTCAAAGAAATAGCAACTGCACTGGAGCATTCCGGTCACAG : GTTCTTGTGGTC R T G Q R N S N C T G A F R S Q : V L V V E Q V K E I A T A L E H S G H R : F L W S Q N R S K K - Q L H W S I P V T : G S C G . . . . . . 67036 TTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGA F K K I S T K G K S R Y T N K L Q R L - L R K S P P K G K V D I P T S Y S D Y E L - E N L H Q R E K - I Y Q Q V T A T M . . . . . . 66976 AGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATG R S F A K R I L G E N K R K R K N N R M E V L P K G F L E R T K E R G K I I G W K K F C Q K D S W R E Q K K E E K - - D . . . . . . 66916 GGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGG G T T S N N F I S S I N R R I C V P L W A P Q V T I L S H P S I G G F V S H C G G H H K - Q F Y L I H Q - E D L C P I V . . . . . . 66856 ATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTA M E F N T R K C T F W C T N C N L A T L W N S I L E S V H F G V P I A T W P L Y D G I Q Y - K V Y I L V Y Q L Q L G H S . . . . . . 66796 TGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGAT C - T T N E C I F I S E R I R T W - R D A E Q Q M N A F L L V K E L G L G E E I M L N N K - M H F Y - - K N - D L V K R . . . . . . 66736 AAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGC K I G L C C - F - R E K - S S - Y S K C R L D Y A V D F E G K N N Q V D T V S A - D W T M L L I L K G K I I K L I Q - V . . . . . . 66676 TCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAG S R N - K W F I K V D G K K - R K - S E Q E I E S G L L K L M V K S E E N E V R L K K L K V V Y - S - W - K V K K M K - . . . . . . 66616 GAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGAGGAAGGTGGATCATCTTATAACTC E K N E G E E - S S Y G G R W I I L - L K K M K E K S R V A M E E G G S S Y N S G K K - R R R V E - L W R K V D H L I T . . . . . . 66556 ACTTGGACTTCTAATTAAGGATGTAATCACAAATATTTAATTTTCTTATAGTATATGAAG T W T S N - G C N H K Y L I F L - Y M K L G L L I K D V I T N I - F S Y S I - R H L D F - L R M - S Q I F N F L I V Y E . . . . . . 66496 AAGCAAAACAAGAGAAGATATATGGTATTTGAGGAGATATGTAGTATTATGATTTATGGT K Q N K R R Y M V F E E I C S I M I Y G S K T R E D I W Y L R R Y V V L - F M V E A K Q E K I Y G I - G D M - Y Y D L W . . . . . . 66436 CATTTTTAATATTTGTACACTTTCAATATTTATTCAATGCGTTCACTTCAAAAATAA H F - Y L Y T F N I Y S M R S L Q K - I F N I C T L S I F I Q C V H F K N S F L I F V H F Q Y L F N A F T S K I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-11_AGS-1_PPS_1 (68616 68450,67048 66517) (frame '2'; 696 bp, 232 residues) 1 KSGHFINNSL EIESTIKWLD DQQDSSVVFL CFGSMGSFEA EQVKEIATAL EHSGHRFLWS 61 LRKSPPKGKV DIPTSYSDYE EVLPKGFLER TKERGKIIGW APQVTILSHP SIGGFVSHCG 121 WNSILESVHF GVPIATWPLY AEQQMNAFLL VKELGLGEEI RLDYAVDFEG KNNQVDTVSA 181 QEIESGLLKL MVKSEENEVR KKMKEKSRVA MEEGGSSYNS LGLLIKDVIT NI- AGS-2 (68101 67800) SCR (e 0.795) Exon 1 68101 67800 ( 302 n); score: 0.795 PGS (68101 67800) SGN-E540411+ 3-phase translation of AGS-2 (-strand): . . . . . . 68101 TTTCCCGAAATCTCAGAGACACACTTATACTATATTAAAGTCTTATTACCCCTGAACTTA F P E I S E T H L Y Y I K V L L P L N L F P K S Q R H T Y T I L K S Y Y P - T Y S R N L R D T L I L Y - S L I T P E L . . . . . . 68041 TTTTATAAGTAATTTTCTATCCATTTTCAGCCTACGTGGTTTCAACTTGAAAAAAAAAAG F Y K - F S I H F Q P T W F Q L E K K K F I S N F L S I F S L R G F N L K K K S I L - V I F Y P F S A Y V V S T - K K K . . . . . . 67981 TCAATCAGCCTTTGGCCCAGAAGATAGTGCCATGAAAGTCGAAAAGGGATAGAAAATTAT S I S L W P R R - C H E S R K G I E N Y Q S A F G P E D S A M K V E K G - K I I V N Q P L A Q K I V P - K S K R D R K L . . . . . . 67921 TAATAAAATAAGTTCAGGGGGAAATAGTACCTTAGTATAGTATAAGTGTGCCTCTGAGAT - - N K F R G K - Y L S I V - V C L - D N K I S S G G N S T L V - Y K C A S E I L I K - V Q G E I V P - Y S I S V P L R . . . . . . 67861 TTCGAACATAGTTTGAGGGAGTACTTGTGCATTATCCCTTACAGAATAAAAGAATAAATA F E H S L R E Y L C I I P Y R I K E - I S N I V - G S T C A L S L T E - K N K - F R T - F E G V L V H Y P L Q N K R I N . 67801 AG K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 67800 CTTATTTATTCTTTTATTCTGTAAGGGATAATGCACAAGTACTCCCTCAAACTATGTTCG L I Y S F I L - G I M H K Y S L K L C S L F I L L F C K G - C T S T P S N Y V R Y L F F Y S V R D N A Q V L P Q T M F . . . . . . 67860 AAATCTCAGAGGCACACTTATACTATACTAAGGTACTATTTCCCCCTGAACTTATTTTAT K S Q R H T Y T I L R Y Y F P L N L F Y N L R G T L I L Y - G T I S P - T Y F I E I S E A H L Y Y T K V L F P P E L I L . . . . . . 67920 TAATAATTTTCTATCCCTTTTCGACTTTCATGGCACTATCTTCTGGGCCAAAGGCTGATT - - F S I P F R L S W H Y L L G Q R L I N N F L S L F D F H G T I F W A K G - L L I I F Y P F S T F M A L S S G P K A D . . . . . . 67980 GACTTTTTTTTTTCAAGTTGAAACCACGTAGGCTGAAAATGGATAGAAAATTACTTATAA D F F F S S - N H V G - K W I E N Y L - T F F F Q V E T T - A E N G - K I T Y K - L F F F K L K P R R L K M D R K L L I . . . . . . 68040 AATAAGTTCAGGGGTAATAAGACTTTAATATAGTATAAGTGTGTCTCTGAGATTTCGGGA N K F R G N K T L I - Y K C V S E I S G I S S G V I R L - Y S I S V S L R F R E K - V Q G - - D F N I V - V C L - D F G . 68100 AA K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (69355 68672) SCR (e 1.000) Exon 1 69355 68672 ( 684 n); score: 1.000 PGS (69355 68672) SGN-E374786+ PGS (69355 68752) SGN-E211480+ PGS (69355 68826) SGN-E202394+ 3-phase translation of AGS-3 (-strand): . . . . . . 69355 TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGC C Q H E R I N F H S F S R I R A H C I S V N M K E L I F I P L A G L G H I V S A S T - K N - F S F L - Q D - G T L Y Q . . . . . . 69295 TATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCAT Y - I C K T N S K - R - K F F H L F S H I E F A K Q I L N K D E N F S I S F L I L L N L Q N K F - I K M K I F P S L F S . . . . . . 69235 CATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACC H G T S F R L W C E K F H S I T H F S T M E L P L D Y G V K N F I Q S L T S Q P S W N F L - T M V - K I S F N H S L L N . . . . . . 69175 TCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAA S F K I H R Y H P R R K N I I S I P Q - R L K F I D I T L D E K T S S Q F L N N L V - N S S I S P - T K K H H L N S S I . . . . . . 69115 CCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGT P - N I P L - F H R W S Q T T R T - I C H E T F L Y D F I D G H K P R V R E Y V T M K H S S M I S S M V T N H A Y V N M . . . . . . 69055 TCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATC S Q H L - N K S M L W F C S - H V L Y I H N I C K T S P C Y G F V L D M F C T S F T T F V K Q V H V M V L F L T C F V H . . . . . . 68995 GATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGC D D - Y S - R I Q C P - L H L L R V K R M I D I A N E F N V P S Y I Y F A S N A R - L I - L T N S M S L V T F T S R Q T . . . . . . 68935 TTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATAC F F S W L M S S F - D F K K - T T F R Y S F L G L C L H F E T L R N E Q H S D T L L F L A Y V F I L R L - E M N N I Q I . . . . . . 68875 GTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAAATCTTTGTCC V Q I H E L - R G I I N P M F - K S L S S R Y M N S N E A L S I P C F K N L C P R P D T - T L T R H Y Q S H V L K I F V . . . . . . 68815 TACTAAAGTTTTGCCTAAGCATTTGTTAGATTCAAGACTTGCTTCAACATTGTTTTTTGA Y - S F A - A F V R F K T C F N I V F - T K V L P K H L L D S R L A S T L F F D L L K F C L S I C - I Q D L L Q H C F L . . . . . . 68755 TGGAATTCGTCGATTTAAAGAGACTAAGGGGATTATTGTTAATACTTTTTTCGAGCTTGA W N S S I - R D - G D Y C - Y F F R A - G I R R F K E T K G I I V N T F F E L E M E F V D L K R L R G L L L I L F S S L . . . 68695 ATCGTTTTCTCTTCAGGCTCTTTT I V F S S G S F S F S L Q A L N R F L F R L F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-11_AGS-3_PPS_1 (69354 68674) (frame '2'; 681 bp, 227 residues) 1 VNMKELIFIP LAGLGHIVSA IEFAKQILNK DENFSISFLI MELPLDYGVK NFIQSLTSQP 61 RLKFIDITLD EKTSSQFLNN HETFLYDFID GHKPRVREYV HNICKTSPCY GFVLDMFCTS 121 MIDIANEFNV PSYIYFASNA SFLGLCLHFE TLRNEQHSDT SRYMNSNEAL SIPCFKNLCP 181 TKVLPKHLLD SRLASTLFFD GIRRFKETKG IIVNTFFELE SFSLQAL 3-phase translation of AGS-3 (+strand): . . . . . . 68672 AAAAGAGCCTGAAGAGAAAACGATTCAAGCTCGAAAAAAGTATTAACAATAATCCCCTTA K R A - R E N D S S S K K V L T I I P L K E P E E K T I Q A R K K Y - Q - S P - K S L K R K R F K L E K S I N N N P L . . . . . . 68732 GTCTCTTTAAATCGACGAATTCCATCAAAAAACAATGTTGAAGCAAGTCTTGAATCTAAC V S L N R R I P S K N N V E A S L E S N S L - I D E F H Q K T M L K Q V L N L T S L F K S T N S I K K Q C - S K S - I - . . . . . . 68792 AAATGCTTAGGCAAAACTTTAGTAGGACAAAGATTTTTAAAACATGGGATTGATAATGCC K C L G K T L V G Q R F L K H G I D N A N A - A K L - - D K D F - N M G L I M P Q M L R Q N F S R T K I F K T W D - - C . . . . . . 68852 TCGTTAGAGTTCATGTATCTGGACGTATCTGAATGTTGTTCATTTCTTAAAGTCTCAAAA S L E F M Y L D V S E C C S F L K V S K R - S S C I W T Y L N V V H F L K S Q N L V R V H V S G R I - M L F I S - S L K . . . . . . 68912 TGAAGACATAAGCCAAGAAAAGAAGCGTTTGACGCGAAGTAAATGTAACTAGGGACATTG - R H K P R K E A F D A K - M - L G T L E D I S Q E K K R L T R S K C N - G H - M K T - A K K R S V - R E V N V T R D I . . . . . . 68972 AATTCGTTAGCTATATCAATCATCGATGTACAAAACATGTCAAGAACAAAACCATAACAT N S L A I S I I D V Q N M S R T K P - H I R - L Y Q S S M Y K T C Q E Q N H N M E F V S Y I N H R C T K H V K N K T I T . . . . . . 69032 GGACTTGTTTTACAAATGTTGTGAACATATTCACGTACGCGTGGTTTGTGACCATCGATG G L V L Q M L - T Y S R T R G L - P S M D L F Y K C C E H I H V R V V C D H R - W T C F T N V V N I F T Y A W F V T I D . . . . . . 69092 AAATCATAGAGGAATGTTTCATGGTTATTGAGGAATTGAGATGATGTTTTTTCGTCTAGG K S - R N V S W L L R N - D D V F S S R N H R G M F H G Y - G I E M M F F R L G E I I E E C F M V I E E L R - C F F V - . . . . . . 69152 GTGATATCGATGAATTTTAAACGAGGTTGAGAAGTGAGTGATTGAATGAAATTTTTCACA V I S M N F K R G - E V S D - M K F F T - Y R - I L N E V E K - V I E - N F S H G D I D E F - T R L R S E - L N E I F H . . . . . . 69212 CCATAGTCTAAAGGAAGTTCCATGATGAGAAAAGAGATGGAAAAATTTTCATCTTTATTT P - S K G S S M M R K E M E K F S S L F H S L K E V P - - E K R W K N F H L Y L T I V - R K F H D E K R D G K I F I F I . . . . . . 69272 AGAATTTGTTTTGCAAATTCAATAGCTGATACAATGTGCCCTAATCCTGCTAAAGGAATG R I C F A N S I A D T M C P N P A K G M E F V L Q I Q - L I Q C A L I L L K E - - N L F C K F N S - Y N V P - S C - R N . . . 69332 AAAATTAATTCTTTCATGTTGACA K I N S F M L T K L I L S C - E N - F F H V D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-11_AGS-3_PPS_1 (68684 68914) (frame '1'; 228 bp, 76 residues) 1 RENDSSSKKV LTIIPLVSLN RRIPSKNNVE ASLESNKCLG KTLVGQRFLK HGIDNASLEF 61 MYLDVSECCS FLKVSK- PGL 12 (- strand): 70927 70457 AGS-1 (70927 70812,70748 70457) SCR (e 0.793 d 0.000 a 1.000,e 0.759) Exon 1 70927 70812 ( 116 n); score: 0.793 Intron 1 70811 70749 ( 63 n); Pd: 0.000 Pa: 1.000 Exon 2 70748 70457 ( 292 n); score: 0.759 PGS (70927 70812,70748 70457) SGN-E230552- 3-phase translation of AGS-1 (-strand): . . . . . . 70927 GGGGGAAAAGAGTGGGAGAAAAGTGGATTGTATATATATTGGTTAGATAATTGTATATTA G G K E W E K S G L Y I Y W L D N C I L G E K S G R K V D C I Y I G - I I V Y Y G K R V G E K W I V Y I L V R - L Y I . . . . . . : 70867 CAATATGTACTTGTATATATGACAAGAGAGATTGGGAGAGGGAGGAGAGAGGCAAG : GGCA Q Y V L V Y M T R E I G R G R R E A R : A N M Y L Y I - Q E R L G E G G E R Q : G Q T I C T C I Y D K R D W E R E E R G K : G . . . . . . 70744 AGCGAGATTGGGAGAGAGAGGAGAGCGAGAGAGGGCAAAGAGTGAGAGATGTGAACTGTA S E I G R E R R A R E G K E - E M - T V A R L G E R G E R E R A K S E R C E L Y K R D W E R E E S E R G Q R V R D V N C . . . . . . 70684 TATGTATATAGGGTAAATAATTGTATATTATACATATGTGTATATTTGTATATTCTGGCG Y V Y R V N N C I L Y I C V Y L Y I L A M Y I G - I I V Y Y T Y V Y I C I F W R I C I - G K - L Y I I H M C I F V Y S G . . . . . . 70624 AATTATACATATACAAACAGGACTAGTTATACAAGTTTGAAGTCAAACCCACATAATTAC N Y T Y T N R T S Y T S L K S N P H N Y I I H I Q T G L V I Q V - S Q T H I I T E L Y I Y K Q D - L Y K F E V K P T - L . . . . . . 70564 TGTATAATGTTAGTCGTGAGTGATAATTACAGCAAAGTATAGCTATGATGAGTAATTAAC C I M L V V S D N Y S K V - L - - V I N V - C - S - V I I T A K Y S Y D E - L T L Y N V S R E - - L Q Q S I A M M S N - . . . . . 70504 TAATATAAATTTATTTTGTTAGCGTAATTTTTCCTATTCTAATTATAA - Y K F I L L A - F F L F - L - N I N L F C - R N F S Y S N Y L I - I Y F V S V I F P I L I I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 73866 75577 AGS-1 (73866 74118,74266 74573,75374 75577) SCR (e 1.000 d 0.239 a 0.998,e 0.997 d 0.999 a 0.957,e 1.000) Exon 1 73866 74118 ( 253 n); score: 1.000 Intron 1 74119 74265 ( 147 n); Pd: 0.239 Pa: 0.998 Exon 2 74266 74573 ( 308 n); score: 0.997 Intron 2 74574 75373 ( 800 n); Pd: 0.999 Pa: 0.957 Exon 3 75374 75577 ( 204 n); score: 1.000 PGS (73866 74118,74266 74386) SGN-E390527+ PGS (73867 74118,74266 74556) SGN-E326008+ PGS (73867 74118,74266 74463) SGN-E325989+ PGS (74466 74573,75374 75577) SGN-E212650+ 3-phase translation of AGS-1 (+strand): . . . . . . 73866 CCAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAA P T C I L H - L T R F K T N I G H I L K Q H V F Y I N - L D L K Q I S D T Y - K N M Y F T L T N - I - N K Y R T H I K . . . . . . 73926 AATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATT N - F E K M I F Q F Q F S F - K - N S I I N L K K - F F N F S F H F K S E I P F K L I - K N D F S I S V F I L K V K F H . . . . . . 73986 TTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGT F T L F H L L F N F H F L L E F S S Y G L P F F T Y Y L I F I F F - N F L V M V F Y P F S P T I - F S F S F R I F - L W . . . . . . 74046 GTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACA V F L L P S F F L V - Q D - W S Q Q F T F S F F L P S F - Y N K I N G V N N L Q C F P S S F L L F S I T R L M E S T I Y . . : . . . . 74106 GACGAAACATCTG : CTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTG D E T S : A Q K T N Q K G S S Y D V F E L T K H L : L K K P T R K A Q A T T F L S - R R N I C : S K N Q P E R L K L R R F - A . . . . . . 74313 ATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGT M D E E F E R K R I E V K A M E A L G C W M K N S R G R G L K L R L W K L W A V D G - R I R E E E D - S - G Y G S F G L . . . . . . 74373 GGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGT G F D F A S D F R L K F V K R C P N G G G L I L L A I S G - S S - K D V Q T G V W V - F C - R F Q V E V R K K M S K R G . . . . . . 74433 AGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACA R L V I L D E S N R R N V V I P G G V T D W - F W M R V I D G T S S S P A A L Q - I G N F G - E - - T E R R H P R R R Y . . . . . . 74493 ATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCT I P D V S E N I R C D K G D H I R F K S F P M Y L K I S D V I K G T T F V S S L N S R C I - K Y P M - - R G P H S F Q V . . . : . . . 74553 GATGTTCTCGAATTTAATCAG : ATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGA D V L E F N Q : M S E L L N Q K S S I H G M F S N L I R : C Q N C - I K N H Q Y M E - C S R I - S : D V R I A K S K I I N T W . . . . . . 75413 AAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGAT K V P S G Y L N A I F D L S G A W L N D R F H Q A I - M P F L I - V E P G - M I K G S I R L S K C H F - F K W S L V E - . . . . . . 75473 TCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCAC S A D A K Y L A F D G Y F V S L Y Y L H Q Q M L S T S R L M V I L S R Y T I C T F S R C - V P R V - W L F C L V I L F A . . . . . 75533 CTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCT L T A S P L V L H D Q V K K A - Q H P H - Y S M T K - R K P D S I P I S T P - P S E E S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-13_AGS-1_PPS_1 (74088 74118,74266 74573,75374 75577) (frame '1'; 543 bp, 181 residues) 1 WSQQFTDETS AQKTNQKGSS YDVFELMDEE FERKRIEVKA MEALGCGFDF ASDFRLKFVK 61 RCPNGGRLVI LDESNRRNVV IPGGVTIPDV SENIRCDKGD HIRFKSDVLE FNQMSELLNQ 121 KSSIHGKVPS GYLNAIFDLS GAWLNDSADA KYLAFDGYFV SLYYLHLTAS PLVLHDQVKK 181 A PGL 14 (+ strand): 76877 79037 AGS-1 (76877 76906,77756 77922,78098 78796) SCR (e 1.000 d 0.958 a 0.690,e 1.000 d 0.967 a 0.992,e 0.993) Exon 1 76877 76906 ( 30 n); score: 1.000 Intron 1 76907 77755 ( 849 n); Pd: 0.958 Pa: 0.690 Exon 2 77756 77922 ( 167 n); score: 1.000 Intron 2 77923 78097 ( 175 n); Pd: 0.967 Pa: 0.992 Exon 3 78098 78796 ( 699 n); score: 0.993 PGS (76877 76906,77756 77922,78098 78284) SGN-E274012+ PGS (77756 77922,78098 78504) SGN-E276485+ PGS (77829 77922,78098 78796) SGN-E263116+ 3-phase translation of AGS-1 (+strand): . . . : . . . 76877 TCAGCCATGCAATAAATTTATATCTACGCT : ATAAGCCTGCTCTAGAGGATTTACAGTGTT S A M Q - I Y I Y A : I S L L - R I Y S V Q P C N K F I S T L : - A C S R G F T V F S H A I N L Y L R : Y K P A L E D L Q C . . . . . . 77786 TCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCC S S S F K F L A S G R H C S A S C L L A P R V S S S - P V G A I V L R A A S - P F L E F Q V P S Q W A P L F C E L P L S . . . . . . 77846 ATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTT I K E K W H L A L H C S S V Y S A Q S F S K K S G I L P C I A V L F I R P K A L H Q R K V A S C P A L Q F C L F G P K L . . : . . . . 77906 GTGTGAGACCTACCCAG : GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATT V - D L P R : L Q V V K N P S L V C A C I C E T Y P : G Y K W S K T R H W F A L V F C V R P T Q : V T S G Q K P V I G L R L Y . . . . . . 78141 TAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAA - K G R N A T T - P Y M Y N I F L V Y Q R R E E M Q P L S H T C T T S F - F T K L E G K K C N H L A I H V Q H L S S L P . . . . . . 78201 ACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAG T L W H L S L L I T - P Y A S H V N G E H Y G I - V C - - P N L M Q A M S M A R N I M A S K S V N N L T L C K P C Q W R . . . . . . 78261 GCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATT A P M I M N L A T N S - I L S D G R D I L R - L - I - R P I L R S C Q M A E I F G S D D Y E S S D Q F L D P V R W P R Y . . . . . . 78321 CCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTG P T C A H L - L S M I Q A G C R A K R V Q R V L I C S - A - S K L D A G R N E W S N V C S S V V K H D P S W M Q G E T S . . . . . . 78381 GCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGC A S L W - L V H T L S A K G S G L R Q C R L C G N W C T P C Q Q R E V A - D S A G V F V V T G A H L V S K G K W P K T V . . . . . . 78441 TTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGG F T C V Y F S P I F L T A Q Y E R Q S G S P A S T F H L S S - L H N T K D R V G L H L R L L F T Y L P N C T I R K T E W . . . . . . 78501 CAGCTACACCAGAGGGTACTCATAGGTCAAGTTTCTTAACAAATCTCAGCACAACTTTTA Q L H Q R V L I G Q V S - Q I S A Q L L S Y T R G Y S - V K F L N K S Q H N F Y A A T P E G T H R S S F L T N L S T T F . . . . . . 78561 CTTTCACTCAGCGGACAAAGACAGATGCTGCACCAAAGCAGCTTCCTGCTGCTCTTAACT L S L S G Q R Q M L H Q S S F L L L L T F H S A D K D R C C T K A A S C C S - L T F T Q R T K T D A A P K Q L P A A L N . . . . . . 78621 CGGGCGTATATCCAGACGGACCTCCAGTACCAGTTCGATCAACAAAGCTGCTCAAGTATG R A Y I Q T D L Q Y Q F D Q Q S C S S M G R I S R R T S S T S S I N K A A Q V C S G V Y P D G P P V P V R S T K L L K Y . . . . . . 78681 TAGATACGGCTGAGATTGCACGAGGGCCATACGACACTCCTGGACATTGGTTGGTAACTG - I R L R L H E G H T T L L D I G W - L R Y G - D C T R A I R H S W T L V G N C V D T A E I A R G P Y D T P G H W L V T . . . . . . 78741 CTGCTAAGCTTGTTACAGAAGGTGGGAAGATAGGTTTGCATGTGAAGTTTGCTCTA L L S L L Q K V G R - V C M - S L L C - A C Y R R W E D R F A C E V C S A A K L V T E G G K I G L H V K F A L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-14_AGS-1_PPS_1 (76879 76906,77756 77922,78098 78796) (frame '0'; 894 bp, 298 residues) 1 SHAINLYLRY KPALEDLQCF LEFQVPSQWA PLFCELPLSH QRKVASCPAL QFCLFGPKLC 61 VRPTQVTSGQ KPVIGLRLYL EGKKCNHLAI HVQHLSSLPN IMASKSVNNL TLCKPCQWRG 121 SDDYESSDQF LDPVRWPRYS NVCSSVVKHD PSWMQGETSG VFVVTGAHLV SKGKWPKTVL 181 HLRLLFTYLP NCTIRKTEWA ATPEGTHRSS FLTNLSTTFT FTQRTKTDAA PKQLPAALNS 241 GVYPDGPPVP VRSTKLLKYV DTAEIARGPY DTPGHWLVTA AKLVTEGGKI GLHVKFAL AGS-2 (77775 78364) SCR (e 1.000) Exon 1 77775 78364 ( 590 n); score: 1.000 PGS (77775 78364) SGN-E302377+ 3-phase translation of AGS-2 (+strand): . . . . . . 77775 TTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCT F T V F P R V S S S - P V G A I V L R A L Q C F L E F Q V P S Q W A P L F C E L Y S V S S S F K F L A S G R H C S A S . . . . . . 77835 GCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGG A S - P S K K S G I L P C I A V L F I R P L S H Q R K V A S C P A L Q F C L F G C L L A I K E K W H L A L H C S S V Y S . . . . . . 77895 CCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAG P K A L C E T Y P G T S L V F L S - Q K P K L C V R P T Q V L L W C F F L S K R A Q S F V - D L P R Y F F G V S F L A K . . . . . . 77955 GACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGA D R C F I T K I I K V E T I C A S F Q - T A A L L Q K - - K L K L Y V L H S N E G P L L Y Y K N N K S - N Y M C F I P M . . . . . . 78015 GGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAAT G I G L A M A S N A L V L M F M M T P N V L V L P W L L M H - Y - C S - - H L I R Y W S C H G F - C T S I D V H D D T - . . . . . . 78075 CGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCT R Y V L L I C R L Q V V K N P S L V C A D M F F L Y V G Y K W S K T R H W F A L S I C S S Y M - V T S G Q K P V I G L R . . . . . . 78135 TGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTT C I - K G R N A T T - P Y M Y N I F L V V F R R E E M Q P L S H T C T T S F - F L Y L E G K K C N H L A I H V Q H L S S . . . . . . 78195 TACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAAT Y Q T L W H L S L L I T - P Y A S H V N T K H Y G I - V C - - P N L M Q A M S M L P N I M A S K S V N N L T L C K P C Q . . . . . . 78255 GGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGA G E A P M I M N L A T N S - I L S D G R A R L R - L - I - R P I L R S C Q M A E W R G S D D Y E S S D Q F L D P V R W P . . . . . 78315 GATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATG D I P T C A H L - L S M I Q A G I F Q R V L I C S - A - S K L D R Y S N V C S S V V K H D P S W M Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-14_AGS-2_PPS_1 (78098 78364) (frame '0'; 267 bp, 89 residues) 1 VTSGQKPVIG LRLYLEGKKC NHLAIHVQHL SSLPNIMASK SVNNLTLCKP CQWRGSDDYE 61 SSDQFLDPVR WPRYSNVCSS VVKHDPSWM >C09HBa0109D11.1+_PGL-14_AGS-2_PPS_2 (77776 77979) (frame '2'; 201 bp, 67 residues) 1 LQCFLEFQVP SQWAPLFCEL PLSHQRKVAS CPALQFCLFG PKLCVRPTQV LLWCFFLSKR 61 TAALLQK- 3-phase translation of AGS-2 (-strand): . . . . . . 78364 CATCCAGCTTGGATCATGCTTAACTACAGATGAGCACACGTTGGAATATCTCGGCCATCT H P A W I M L N Y R - A H V G I S R P S I Q L G S C L T T D E H T L E Y L G H L S S L D H A - L Q M S T R W N I S A I . . . . . . 78304 GACAGGATCTAAGAATTGGTCGCTAGATTCATAATCATCGGAGCCTCGCCATTGACATGG D R I - E L V A R F I I I G A S P L T W T G S K N W S L D S - S S E P R H - H G - Q D L R I G R - I H N H R S L A I D M . . . . . . 78244 CTTGCATAAGGTTAGGTTATTAACAGACTTAGATGCCATAATGTTTGGTAAACTAGAAAG L A - G - V I N R L R C H N V W - T R K L H K V R L L T D L D A I M F G K L E R A C I R L G Y - Q T - M P - C L V N - K . . . . . . 78184 ATGTTGTACATGTATGGCTAAGTGGTTGCATTTCTTCCCTTCTAAATACAAGCGCAAACC M L Y M Y G - V V A F L P F - I Q A Q T C C T C M A K W L H F F P S K Y K R K P D V V H V W L S G C I S S L L N T S A N . . . . . . 78124 AATGACGGGTTTTTGACCACTTGTAACCTACATATAAGAAGAACATATCGATTAGGTGTC N D G F L T T C N L H I R R T Y R L G V M T G F - P L V T Y I - E E H I D - V S Q - R V F D H L - P T Y K K N I S I R C . . . . . . 78064 ATCATGAACATCAATACTAGTGCATTAGAAGCCATGGCAAGACCAATACCTCATTGGAAT I M N I N T S A L E A M A R P I P H W N S - T S I L V H - K P W Q D Q Y L I G M H H E H Q Y - C I R S H G K T N T S L E . . . . . . 78004 GAAGCACATATAGTTTCAACTTTTATTATTTTTGTAATAAAGCAGCGGTCCTTTTGCTAA E A H I V S T F I I F V I K Q R S F C - K H I - F Q L L L F L - - S S G P F A K - S T Y S F N F Y Y F C N K A A V L L L . . . . . . 77944 GAAAGAAACACCAAAGAAGTACCTGGGTAGGTCTCACACAAAGCTTTGGGCCGAATAAAC E R N T K E V P G - V S H K A L G R I N K E T P K K Y L G R S H T K L W A E - T R K K H Q R S T W V G L T Q S F G P N K . . . . . . 77884 AGAACTGCAATGCAGGGCAAGATGCCACTTTTCTTTGATGGCTAAGAGGCAGCTCGCAGA R T A M Q G K M P L F F D G - E A A R R E L Q C R A R C H F S L M A K R Q L A E Q N C N A G Q D A T F L - W L R G S S Q . . . . . 77824 ACAATGGCGCCCACTGGCTAGGAACTTGAAACTCGAGGAAACACTGTAAA T M A P T G - E L E T R G N T V Q W R P L A R N L K L E E T L - N N G A H W L G T - N S R K H C K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-14_AGS-2_PPS_1 (78139 77945) (frame '1'; 192 bp, 64 residues) 1 IQAQTNDGFL TTCNLHIRRT YRLGVIMNIN TSALEAMARP IPHWNEAHIV STFIIFVIKQ 61 RSFC- AGS-3 (78811 79037) SCR (e 0.910) Exon 1 78811 79037 ( 227 n); score: 0.910 PGS (78811 79037) SGN-E398116- 3-phase translation of AGS-3 (+strand): . . . . . . 78811 CGAATCATAATTTCTTGTGTGTACATATTCTGAGGTAGCCTTGTCCTTTTCTTTATATCA R I I I S C V Y I F - G S L V L F F I S E S - F L V C T Y S E V A L S F S L Y H N H N F L C V H I L R - P C P F L Y I . . . . . . 78871 TTTTTATTCAGTTACATTTAGTCTTATCAGCTTCCAATATCTTGATGATATATCATATTG F L F S Y I - S Y Q L P I S - - Y I I L F Y S V T F S L I S F Q Y L D D I S Y C I F I Q L H L V L S A S N I L M I Y H I . . . . . . 78931 TTTAATTTATCCAAGAAATGGCCAACAGGGGAGGAAAATGTTATAGTATTGTACAGAAGA F N L S K K W P T G E E N V I V L Y R R L I Y P R N G Q Q G R K M L - Y C T E E V - F I Q E M A N R G G K C Y S I V Q K . . . . . 78991 ATTTAGTGGAAGAATCGATTTATTTTTTGTTCTTTCCACCTTTTCAA I - W K N R F I F C S F H L F F S G R I D L F F V L S T F S N L V E E S I Y F L F F P P F Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 79037 TTGAAAAGGTGGAAAGAACAAAAAATAAATCGATTCTTCCACTAAATTCTTCTGTACAAT L K R W K E Q K I N R F F H - I L L Y N - K G G K N K K - I D S S T K F F C T I E K V E R T K N K S I L P L N S S V Q . . . . . . 78977 ACTATAACATTTTCCTCCCCTGTTGGCCATTTCTTGGATAAATTAAACAATATGATATAT T I T F S S P V G H F L D K L N N M I Y L - H F P P L L A I S W I N - T I - Y I Y Y N I F L P C W P F L G - I K Q Y D I . . . . . . 78917 CATCAAGATATTGGAAGCTGATAAGACTAAATGTAACTGAATAAAAATGATATAAAGAAA H Q D I G S - - D - M - L N K N D I K K I K I L E A D K T K C N - I K M I - R K S S R Y W K L I R L N V T E - K - Y K E . . . . . 78857 AGGACAAGGCTACCTCAGAATATGTACACACAAGAAATTATGATTCG R T R L P Q N M Y T Q E I M I G Q G Y L R I C T H K K L - F K D K A T S E Y V H T R N Y D S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 85330 86275 AGS-1 (85330 85353,85875 85914,86049 86275) SCR (e 0.750 d 0.000 a 0.000,e 0.900 d 0.000 a 0.000,e 0.881) Exon 1 85330 85353 ( 24 n); score: 0.750 Intron 1 85354 85874 ( 521 n); Pd: 0.000 Pa: 0.000 Exon 2 85875 85914 ( 40 n); score: 0.900 Intron 2 85915 86048 ( 134 n); Pd: 0.000 Pa: 0.000 Exon 3 86049 86275 ( 227 n); score: 0.881 PGS (85330 85353,85875 85914,86049 86275) SGN-E543331+ PGS (86052 86274) SGN-E370622- PGS (86157 86275) SGN-E544264+ 3-phase translation of AGS-1 (+strand): . . . : . . . 85330 GAGAGTTTTTGTTAGAGGAAAAAT : GTTTTGGATTGACTAATCCTTCTTCTGGTAGGAAAA E S F C - R K N : V L D - L I L L L V G K R V F V R G K M : F W I D - S F F W - E K E F L L E E K : C F G L T N P S S G R K . : . . . . . 85911 GGTT : CTCCATGTATTCCGAGTCAATTGATTGAGGTTGTTTCTCTCTATATTTTGTACTCT G : S P C I P S Q L I E V V S L Y I L Y S V : L H V F R V N - L R L F L S I F C T L R F : S M Y S E S I D - G C F S L Y F V L . . . . . . 86105 CATATTTATAGTGGATTGCTCATCTCCTTTGTGGACTTAGATCGATTGACCGAACTACGT H I Y S G L L I S F V D L D R L T E L R I F I V D C S S P L W T - I D - P N Y V S Y L - W I A H L L C G L R S I D R T T . . . . . . 86165 TAAATCTTTGTGTCTTTTGATATACTTCTCATTGTCTTCTTACTCGTGGTCTTTTGAGGT - I F V S F D I L L I V F L L V V F - G K S L C L L I Y F S L S S Y S W S F E V L N L C V F - Y T S H C L L T R G L L R . . . . . . 86225 TTTGCTTTGCTAGCTTTCGCATTTACACCTGCTTGATTCCGGTCCTAACAA F A L L A F A F T P A - F R S - Q L L C - L S H L H L L D S G P N F C F A S F R I Y T C L I P V L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (85432 85811) SCR (e 0.792) Exon 1 85432 85811 ( 380 n); score: 0.792 PGS (85432 85811) SGN-E271645- 3-phase translation of AGS-2 (+strand): . . . . . . 85432 GTCGATTGCTCGAACCATGTTAAATCTTTGAGTCTTTTGATATATTTCCCGTTGTCTTTT V D C S N H V K S L S L L I Y F P L S F S I A R T M L N L - V F - Y I S R C L F R L L E P C - I F E S F D I F P V V F . . . . . . 85492 TACTCGTGGTCTTTTGAGGTTTTGCTTTGTTAGCTTTCGCATTTACACCTGCTTGTTTTC Y S W S F E V L L C - L S H L H L L V F T R G L L R F C F V S F R I Y T C L F S L L V V F - G F A L L A F A F T P A C F . . . . . . 85552 GGTCCTAACAAGTGGTAACAGAGCTAGATTCAATGACGGAGTTGGGTTTAGTGGTTCGAT G P N K W - Q S - I Q - R S W V - W F D V L T S G N R A R F N D G V G F S G S I R S - Q V V T E L D S M T E L G L V V R . . . . . . 85612 AATCGATTATTGAATCAGGTTAGAAAGAGGTGTTCATCTTGGCGGGTGCAATTCTAGCCA N R L L N Q V R K R C S S W R V Q F - P I D Y - I R L E R G V H L G G C N S S H - S I I E S G - K E V F I L A G A I L A . . . . . . 85672 CAACCTTTTTTGATAGTAATGAAGATTTTGTTGAAGAATTGTTTCAGAGAGGTTCTCTGT Q P F L I V M K I L L K N C F R E V L C N L F - - - - R F C - R I V S E R F S V T T F F D S N E D F V E E L F Q R G S L . . . . . . 85732 GTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGAAGAAGCAAGTTGTTAAAGATTA V E T - I L Q R R L W R E E A S C - R L L R H K F C K G D Y G E K K Q V V K D - C - D I N F A K E I M E R R S K L L K I . . 85792 AGTGAAGAAGGTAGACAATT S E E G R Q V K K V D N K - R R - T I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 85811 AATTGTCTACCTTCTTCACTTAATCTTTAACAACTTGCTTCTTCTCTCCATAATCTCCTT N C L P S S L N L - Q L A S S L H N L L I V Y L L H L I F N N L L L L S I I S F L S T F F T - S L T T C F F S P - S P . . . . . . 85751 TGCAAAATTTATGTCTCAACACAGAGAACCTCTCTGAAACAATTCTTCAACAAAATCTTC C K I Y V S T Q R T S L K Q F F N K I F A K F M S Q H R E P L - N N S S T K S S L Q N L C L N T E N L S E T I L Q Q N L . . . . . . 85691 ATTACTATCAAAAAAGGTTGTGGCTAGAATTGCACCCGCCAAGATGAACACCTCTTTCTA I T I K K G C G - N C T R Q D E H L F L L L S K K V V A R I A P A K M N T S F - H Y Y Q K R L W L E L H P P R - T P L S . . . . . . 85631 ACCTGATTCAATAATCGATTATCGAACCACTAAACCCAACTCCGTCATTGAATCTAGCTC T - F N N R L S N H - T Q L R H - I - L P D S I I D Y R T T K P N S V I E S S S N L I Q - S I I E P L N P T P S L N L A . . . . . . 85571 TGTTACCACTTGTTAGGACCGAAAACAAGCAGGTGTAAATGCGAAAGCTAACAAAGCAAA C Y H L L G P K T S R C K C E S - Q S K V T T C - D R K Q A G V N A K A N K A K L L P L V R T E N K Q V - M R K L T K Q . . . . . . 85511 ACCTCAAAAGACCACGAGTAAAAAGACAACGGGAAATATATCAAAAGACTCAAAGATTTA T S K D H E - K D N G K Y I K R L K D L P Q K T T S K K T T G N I S K D S K I - N L K R P R V K R Q R E I Y Q K T Q R F . . 85451 ACATGGTTCGAGCAATCGAC T W F E Q S H G S S N R N M V R A I D Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (85436 85449,85635 85652,85825 86261) SCR (e 0.714 d 0.625 a 0.000,e 0.778 d 0.773 a 0.000,e 0.889) Exon 1 85436 85449 ( 14 n); score: 0.714 Intron 1 85450 85634 ( 185 n); Pd: 0.625 Pa: 0.000 Exon 2 85635 85652 ( 18 n); score: 0.778 Intron 2 85653 85824 ( 172 n); Pd: 0.773 Pa: 0.000 Exon 3 85825 86261 ( 437 n); score: 0.889 PGS (85436 85449,85635 85652,85825 86182) SGN-E243194- PGS (85870 86261) SGN-E206285- PGS (86007 86261) SGN-E206496- 3-phase translation of AGS-3 (+strand): . . : . . : . . 85436 ATTGCTCGAACCAT : AAAGAGGTGTTCATCTTG : AAGGAAAAGATTTGTTGGAAATCCAGGT I A R T I : K R C S S - : R K R F V G N P G L L E P : - R G V H L : E G K D L L E I Q V C S N H : K E V F I L : K E K I C W K S R . . . . . . 85853 CCTGATTTCTTACCATTAATAGGTTTTGGATTGACTAATCCTTCTTCTGGTAGGAAAAGG P D F L P L I G F G L T N P S S G R K R L I S Y H - - V L D - L I L L L V G K G S - F L T I N R F W I D - S F F W - E K . . . . . . 85913 TTTAGAACTTTATAAATAAAGGTATGTTCCTTCTAACTTAATCAGCATTCACAATGTAAT F R T L - I K V C S F - L N Q H S Q C N L E L Y K - R Y V P S N L I S I H N V I V - N F I N K G M F L L T - S A F T M - . . . . . . 85973 CTTAAAGGCTTTGAAAGTTTTGGTTAGAGGGAGAATTTATGAGTCACATGCTTGATAAGT L K G F E S F G - R E N L - V T C L I S L K A L K V L V R G R I Y E S H A - - V S - R L - K F W L E G E F M S H M L D K . . . . . . 86033 TATTACTTGTGGGAACCTCCATGTATTCCGAGTCAATTGATTGAGGTTGTTTCTCTCTAT Y Y L W E P P C I P S Q L I E V V S L Y I T C G N L H V F R V N - L R L F L S I L L L V G T S M Y S E S I D - G C F S L . . . . . . 86093 ATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACTTAGATCGATTG I L Y S H I Y S G L L I S F V D L D R L F C T L I F I V D C S S P L W T - I D - Y F V L S Y L - W I A H L L C G L R S I . . . . . . 86153 ACCGAACTACGTTAAATCTTTGTGTCTTTTGATATACTTCTCATTGTCTTCTTACTCGTG T E L R - I F V S F D I L L I V F L L V P N Y V K S L C L L I Y F S L S S Y S W D R T T L N L C V F - Y T S H C L L T R . . . . . 86213 GTCTTTTGAGGTTTTGCTTTGCTAGCTTTCGCATTTACACCTGCTTGAT V F - G F A L L A F A F T P A - S F E V L L C - L S H L H L L D G L L R F C F A S F R I Y T C L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (85635 85652,85868 86275) SCR (e 0.722 d 0.773 a 0.000,e 0.887) Exon 1 85635 85652 ( 18 n); score: 0.722 Intron 1 85653 85867 ( 215 n); Pd: 0.773 Pa: 0.000 Exon 2 85868 86275 ( 408 n); score: 0.887 PGS (85635 85652,85868 86275) SGN-E211090+ PGS (85635 85652,85868 86253) SGN-E205772+ PGS (85635 85652,85868 86218) SGN-E205773+ 3-phase translation of AGS-4 (+strand): . . : . . . . 85635 AAAGAGGTGTTCATCTTG : TTAATAGGTTTTGGATTGACTAATCCTTCTTCTGGTAGGAAA K E V F I L : L I G F G L T N P S S G R K K R C S S C : - - V L D - L I L L L V G K R G V H L : V N R F W I D - S F F W - E . . . . . . 85910 AGGTTTAGAACTTTATAAATAAAGGTATGTTCCTTCTAACTTAATCAGCATTCACAATGT R F R T L - I K V C S F - L N Q H S Q C G L E L Y K - R Y V P S N L I S I H N V K V - N F I N K G M F L L T - S A F T M . . . . . . 85970 AATCTTAAAGGCTTTGAAAGTTTTGGTTAGAGGGAGAATTTATGAGTCACATGCTTGATA N L K G F E S F G - R E N L - V T C L I I L K A L K V L V R G R I Y E S H A - - - S - R L - K F W L E G E F M S H M L D . . . . . . 86030 AGTTATTACTTGTGGGAACCTCCATGTATTCCGAGTCAATTGATTGAGGTTGTTTCTCTC S Y Y L W E P P C I P S Q L I E V V S L V I T C G N L H V F R V N - L R L F L S K L L L V G T S M Y S E S I D - G C F S . . . . . . 86090 TATATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACTTAGATCGA Y I L Y S H I Y S G L L I S F V D L D R I F C T L I F I V D C S S P L W T - I D L Y F V L S Y L - W I A H L L C G L R S . . . . . . 86150 TTGACCGAACTACGTTAAATCTTTGTGTCTTTTGATATACTTCTCATTGTCTTCTTACTC L T E L R - I F V S F D I L L I V F L L - P N Y V K S L C L L I Y F S L S S Y S I D R T T L N L C V F - Y T S H C L L T . . . . . . 86210 GTGGTCTTTTGAGGTTTTGCTTTGCTAGCTTTCGCATTTACACCTGCTTGATTCCGGTCC V V F - G F A L L A F A F T P A - F R S W S F E V L L C - L S H L H L L D S G P R G L L R F C F A S F R I Y T C L I P V . 86270 TAACAA - Q N L T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (- strand): 93459 92547 AGS-1 (93459 93359,93002 92547) SCR (e 1.000 d 0.082 a 0.999,e 1.000) Exon 1 93459 93359 ( 101 n); score: 1.000 Intron 1 93358 93003 ( 356 n); Pd: 0.082 Pa: 0.999 Exon 2 93002 92547 ( 456 n); score: 1.000 PGS (93459 93359,93002 92547) SGN-E251427+ PGS (93454 93359,93002 92612) SGN-E551438+ 3-phase translation of AGS-1 (-strand): . . . . . . 93459 TAGAGGTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTC - R C Y S S C - C R Y T N L W C K S C F R G V I P L V D A D I Q T S G A K A A S E V L F L L L M Q I Y K P L V Q K L L . . . . . : . 93399 TTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAG : TTTATAGTGACCAAGGTGC L C S I S F T G H F F Y - S : L - - P R C C A Q L A S L A T S S T K : V Y S D Q G A L V L N - L H W P L L L L K : F I V T K V . . . . . . 92983 ACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGC T S I I - S S C W S S Y S I W F H G N G P A S F K V P A G A V I P F G S M E T A H Q H H L K F L L E Q L F H L V P W K R . . . . . . 92923 ATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGC I G N E Q V N G D L H I A C - A D R N S L E T N K L M E T F T L L V E Q I E T A H W K R T S - W R P S H C L L S R - K Q . . . . . . 92863 TGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTC - N - W R - T - - T L - G S P E V N I F E I D G G E L D K H C E D L Q K L I S S L K L M A V N L I N T V R I S R S - Y L . . . . . . 92803 GTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACG V I A W T R C H R K L G R N I S R - C T L L P G Q D V I E S L G E I F P G N A R R Y C L D K M S S K A W E K Y F P V M H . . . . . . 92743 TTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACT F N S A F K C - C R G L G G D V S S R T L I V R S S A N V E D L A G M S A A G L V - - C V Q V L M S R T W R G C Q Q P D . . . . . . 92683 TTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGC L - F N S - C - P F R S G K V W T C C S Y D S I P N V S P S D P V R F G H A V A F M I Q F L M L A L Q I R - G L D M L - . . . . . . 92623 CCGTGTTTGGGCCTCGTTGTATACTAGAAGAGCAGTACTGAGCCGCAGAGCTGCTGGTGT P C L G L V V Y - K S S T E P Q S C W C R V W A S L Y T R R A V L S R R A A G V P V F G P R C I L E E Q Y - A A E L L V . . 92563 GTCCCAGAAAGATGCTA V P E R C S Q K D A C P R K M L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-16_AGS-1_PPS_1 (93458 93359,93002 92548) (frame '2'; 555 bp, 185 residues) 1 RGVIPLVDAD IQTSGAKAAS CAQLASLATS STKVYSDQGA PASFKVPAGA VIPFGSMETA 61 LETNKLMETF TLLVEQIETA EIDGGELDKH CEDLQKLISS LLPGQDVIES LGEIFPGNAR 121 LIVRSSANVE DLAGMSAAGL YDSIPNVSPS DPVRFGHAVA RVWASLYTRR AVLSRRAAGV 181 SQKDA PGL 17 (- strand): 100218 96960 AGS-1 (100218 100173,100103 99972,99129 99004,98892 98714,98016 97932,97054 96960) SCR (e 1.000 d 0.964 a 0.995,e 1.000 d 0.981 a 0.995,e 1.000 d 0.999 a 0.897,e 1.000 d 1.000 a 0.991,e 1.000 d 0.882 a 0.955,e 1.000) Exon 1 100218 100173 ( 46 n); score: 1.000 Intron 1 100172 100104 ( 69 n); Pd: 0.964 Pa: 0.995 Exon 2 100103 99972 ( 132 n); score: 1.000 Intron 2 99971 99130 ( 842 n); Pd: 0.981 Pa: 0.995 Exon 3 99129 99004 ( 126 n); score: 1.000 Intron 3 99003 98893 ( 111 n); Pd: 0.999 Pa: 0.897 Exon 4 98892 98714 ( 179 n); score: 1.000 Intron 4 98713 98017 ( 697 n); Pd: 1.000 Pa: 0.991 Exon 5 98016 97932 ( 85 n); score: 1.000 Intron 5 97931 97055 ( 877 n); Pd: 0.882 Pa: 0.955 Exon 6 97054 96960 ( 95 n); score: 1.000 PGS (100218 100173,100103 99972,99129 99004,98892 98714,98016 97932,97054 96960) SGN-E344684+ 3-phase translation of AGS-1 (-strand): . . . . . : . 100218 TTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAG : TGGATAAATACAGG F T S L G G S H V C S C L S K : V D K Y R S H R L E A L T Y A A V Y L K : W I N T G H I A W R L S R M Q L S I - S : G - I Q . . . . . . 100089 GCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTC A N S L P - R W G S P S T K - T C R D F Q I P C L E D G G H H R P N R H A E I S G K F L A L K M G V T I D Q I D M Q R F . . . . . . : 100029 CAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAG : GA Q A Y I S - S R K S L E Q E R H Y T S : G R L I F R E V E K V L S R K D T T L Q : E P G L Y F V K - K K S - A G K T L H F R : . . . . . . 99127 AATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGC N T C D P Q D A T V L A F F - S R I H C I L V I R K M Q P C L P S F K A E F T A K Y L - S A R C N R A C L L L K Q N S L . . . . . . 99067 ATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCT I R S F N E N Q G H R S - E - Y S A - S S V P L T R I R D I A H R N D I P H D L H P F L - R E S G T S L I G M I F R M I . : . . . . . 99007 TAAG : CAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGA - : A R N Q T Y Y T K Q A P - K C W P - R K : Q E I K H T I Q N K L H R N A G P E D L S : K K S N I L Y K T S S I E M L A L K . . . . . . 98836 TCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGA S S I H R S N A R K N Y Q T T W T I Q - L V S T E A M L E R I T K Q P G Q Y S E I - Y P Q K Q C S K E L P N N L D N T V . . . . . . 98776 GGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGG G I C R A I Q D F P Q - T K R F L Q C W A F V E Q F K I F H N E L K D F F N A G R H L - S N S R F S T M N - K I S S M L . : . . . . . 98716 GAG : TCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAAT E : S - - T A G I Y K R I T R R K - L D N S : L D E Q L E S I R E S L D G S S L T M G : V L M N S W N L - E N H S T E V A - Q . . . : . . . 97959 GCTTTCATCATTCTTGGAGTCCAAAAAG : GAATTGGTTAGATTGGATGAAAAACATAATGT A F I I L G V Q K : G I G - I G - K T - C L S S F L E S K K : E L V R L D E K H N V C F H H S W S P K R : N W L D W M K N I M . . . . . . 97022 TTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCG F R D - K N W I S S Q D Y Q L S E C S S S E T E R T G F L V R T I N S L N A L R F Q R L K E L D F - S G L S T L - M L F . 96962 TGA - V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-17_AGS-1_PPS_1 (100217 100173,100103 99972,99129 99004,98892 98714,98016 97932,97054 96962) (frame '2'; 660 bp, 220 residues) 1 SHRLEALTYA AVYLKWINTG QIPCLEDGGH HRPNRHAEIS RLIFREVEKV LSRKDTTLQE 61 ILVIRKMQPC LPSFKAEFTA SVPLTRIRDI AHRNDIPHDL KQEIKHTIQN KLHRNAGPED 121 LVSTEAMLER ITKQPGQYSE AFVEQFKIFH NELKDFFNAG SLDEQLESIR ESLDGSSLTM 181 LSSFLESKKE LVRLDEKHNV SETERTGFLV RTINSLNALR PGL 18 (- strand): 109108 107206 AGS-1 (109108 108228,108117 107836,107614 107206) SCR (e 1.000 d 0.994 a 0.999,e 0.996 d 0.999 a 0.626,e 1.000) Exon 1 109108 108228 ( 881 n); score: 1.000 Intron 1 108227 108118 ( 110 n); Pd: 0.994 Pa: 0.999 Exon 2 108117 107836 ( 282 n); score: 0.996 Intron 2 107835 107615 ( 221 n); Pd: 0.999 Pa: 0.626 Exon 3 107614 107206 ( 409 n); score: 1.000 PGS (108252 108228,108117 107836,107614 107206) SGN-E390928- PGS (108040 107836,107614 107206) SGN-E390927- PGS (108893 108239) SGN-E335463+ PGS (108849 108273) SGN-E278924+ PGS (108994 108389) SGN-E301544+ PGS (109046 108426) SGN-E291872+ PGS (108891 108456) SGN-E302969+ PGS (109048 108475) SGN-E390674+ PGS (109046 108480) SGN-E291937+ PGS (109048 108519) SGN-E390673+ PGS (109048 108526) SGN-E302472+ PGS (109073 108527) SGN-E300235+ PGS (109103 108551) SGN-E305501+ PGS (109047 108599) SGN-E294327+ PGS (109047 108599) SGN-E294328+ PGS (109108 108711) SGN-E310265+ 3-phase translation of AGS-1 (-strand): . . . . . . 109108 CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAA L W I T I H L C L C Q F - C W L I S - Q Y G L L Y T C V C V N F S V G - Y H S K M D Y Y T L V F V S I L V L A N I I A . . . . . . 109048 AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTG K Y V A K E A K N F H Q V H H H G Q L L N M - Q R K Q K T S T R S I T M A N Y W K I C S K G S K K L P P G P S P W P I I . . . . . . 108988 GAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATT E T F S C - V Q N L I Y H - P I L Q K I K P S V V R C K T S Y I T S Q S C K K L G N L Q L L G A K P H I S L A N L A K N . . . . . . 108928 ATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAA M V Q L - V - S - V K - Q Q - S F P H Q W S N Y E F K V R S N N N N S H F L I N Y G P I M S L K L G Q I T T I V I S S S . . . . . . 108868 CCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTA P L Q N K S L K L K I K P F H L D L L L H C K T S P - N S R S S L F I - I C S - T I A K Q V L K T Q D Q A F S S R F A P . . . . . . 108808 ATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTC M L F K R T T I T N F L W H G F L F V L C S S S A Q P L Q I F C G M A S C L S S N A L Q A H N H Y K F S V A W L P V C P . . . . . . 108748 AATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATG N G E R F E E Y - T L T S Y L P I S L M M A N A S K N I E H - P L I F Q - A - C Q W R T L R R I L N T N L L S S N K L D . . . . . . 108688 CAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTA Q I N I - G L K R - N N - L I I V T N V K S T S K V S K G E T I D - L L - Q M - A N Q H L R S Q K V K Q L I D Y C D K C . . . . . . 108628 GTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGT V N K V K L W I - V K L F S R L V L I C S T R - S F G Y R S S C F Q D - S - F V S Q Q G E A L D I G Q V V F K T S L N L . . . . . . 108568 TGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGT C Q T H F S P R I W L I L F Q I Q R - S V K H T F L Q G F G - S F F R F K G R V L S N T L F S K D L A D P F S D S K V E . . . . . . 108508 TGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTT - R K L Y G V S W L R - G S L I - - I F E G S Y M G Y H G - G R E A - F S R F F L K E V I W G I M A E V G K P N L V D F . . . . . . 108448 TCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG S P Y L K K L I F K E - D V A L S F I L P H T - K N - S S R N K T S R Y H S F W F P I L E K I D L Q G I R R R A I I H F . . . . . . 108388 GTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGAC V S C L N F L M I - S T N D W R K R K D - V V - T F - - F D Q R T I G G K E K T G K L F K L F D D L I N E R L E E K K R . . . . . . 108328 CAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATC Q D S W K R A M F L K Y F S I L L K K I R I H G K E R C S - N I S Q Y Y - K K S P G F M E K S D V L E I F L N I T E K N . . . . . : . 108268 CTCAAGAGATTGATCATAATCACATCAAGTCCATGTTCATG : GACCTATTTGGTGCGGGTA L K R L I I I T S S P C S W : T Y L V R V S R D - S - S H Q V H V H : G P I W C G Y P Q E I D H N H I K S M F M : D L F G A G . . . . . . 108098 CTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGA L I Q P Q A H W N G Q W Q N C L N N L R - Y N H K H I G M G N G R I A - T T - D T D T T T S T L E W A M A E L L K Q P E . . . . . . 108038 TAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAG - - K K L K L N L L K S L G K E N - - K N K K S S S - T C - N H W E R K I N R R I I K K A Q V E L A E I I G K G K L I E . . . . . . 107978 AAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGC K L M F F D S L T C N A L S K K H - D C S - C F S T P L L A M H Y Q R N I K I A E A D V F R L P Y L Q C I I K E T L R L . . . . . . 107918 ATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACT I H R F R S - F R A K - T K M L N C V T S T G S A L S S A Q S R P R C - I V - L H P P V P L L V P R K V D Q D V E L C D . . . : . . . 107858 ACATCATCCCAAAGGGCTCACAG : GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTA T S S Q R A H R : Y - L M C G R L V E I L H H P K G L T : G T S - C V G D W S R F Y Y I I P K G S Q : V L V N V W A I G R D F . . . . . . 107577 CTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACA L F G R I L - S L N L R D F - I W I W T F L E G S F R V - T - E I F E F G S G H T F W K D P L E F K P E R F L N L D L D . . . . . . 107517 TGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGT C E D K I L S - F H L V L D E E Y A L G A R T R F - V D S I W C W T K N M P W V M R G Q D F E L I P F G A G R R I C P G . . . . . . 107457 TGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATT C H - H - G - F Q - C W A H C - I H S I A T S I E D D S S N V G L T V E F I Q L L P L A L R M I P V M L G S L L N S F N . . . . . . 107397 GGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTA G N L M Q V L S H K N - T W R R S L V L E T - C R Y - A T R I R H G G E V W Y Y W K L D A G I E P Q E L D M E E K F G I . . . . . . 107337 CCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATT P - P K L I L C E L S P L L F D R C C I L S Q S S S F A S Y P L S S L I D V A L T L A K A H P L R A I P S P L - S M L H . . . . . . 107277 GCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCT A - S I N I Y M Y L I F T L K Q V F - S P S R - I F I C I - Y L R - S K Y F N L C L V D K Y L Y V F D I Y A E A S I L I . . 107217 AAATAATCATAT K - S Y N N H - I I I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-18_AGS-1_PPS_1 (109106 108228,108117 107836,107614 107291) (frame '0'; 1482 bp, 494 residues) 1 MDYYTLVFVS ILVLANIIAK ICSKGSKKLP PGPSPWPIIG NLQLLGAKPH ISLANLAKNY 61 GPIMSLKLGQ ITTIVISSST IAKQVLKTQD QAFSSRFAPN ALQAHNHYKF SVAWLPVCPQ 121 WRTLRRILNT NLLSSNKLDA NQHLRSQKVK QLIDYCDKCS QQGEALDIGQ VVFKTSLNLL 181 SNTLFSKDLA DPFSDSKVEL KEVIWGIMAE VGKPNLVDFF PILEKIDLQG IRRRAIIHFG 241 KLFKLFDDLI NERLEEKKRP GFMEKSDVLE IFLNITEKNP QEIDHNHIKS MFMDLFGAGT 301 DTTTSTLEWA MAELLKQPEI IKKAQVELAE IIGKGKLIEE ADVFRLPYLQ CIIKETLRLH 361 PPVPLLVPRK VDQDVELCDY IIPKGSQVLV NVWAIGRDFT FWKDPLEFKP ERFLNLDLDM 421 RGQDFELIPF GAGRRICPGL PLALRMIPVM LGSLLNSFNW KLDAGIEPQE LDMEEKFGIT 481 LAKAHPLRAI PSPL- PGL 19 (+ strand): 113118 113400 AGS-1 (113118 113400) SCR (e 0.982) Exon 1 113118 113400 ( 283 n); score: 0.982 PGS (113118 113400) SGN-E309339- 3-phase translation of AGS-1 (+strand): . . . . . . 113118 TGAGCTTTGACTAAAGCCAAACCAAATTTCTCCTCCATGTCTAGGTCTTCTGGTCTAATG - A L T K A K P N F S S M S R S S G L M E L - L K P N Q I S P P C L G L L V - C S F D - S Q T K F L L H V - V F W S N . . . . . . 113178 CCTGCCTCGAGTTTCCAATTGAAGGAATTCAAGAGTGAGCCCAACATGACTGGAATCATT P A S S F Q L K E F K S E P N M T G I I L P R V S N - R N S R V S P T - L E S F A C L E F P I E G I Q E - A Q H D W N H . . . . . . 113238 CGCAATGCAAGTGGCAAGGCAGGGCACATTCTTCTACCCGCACCAAATGGGATCAGTTCA R N A S G K A G H I L L P A P N G I S S A M Q V A R Q G T F F Y P H Q M G S V Q S Q C K W Q G R A H S S T R T K W D Q F . . . . . . 113298 AAATCTTGTCCTCGCACGTCTAAATTTGAATGCCAAAACCTCTCAGGTTTAAACACTAAG K S C P R T S K F E C Q N L S G L N T K N L V L A R L N L N A K T S Q V - T L R K I L S S H V - I - M P K P L R F K H - . . . . . 113358 GGATCCTCCCAAAAAGTAGAATCTCTATTAATTTCCCACACAT G S S Q K V E S L L I S H T D P P K K - N L Y - F P T H G I L P K S R I S I N F P H Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1+_PGL-19_AGS-1_PPS_1 (113121 113399) (frame '1'; 279 bp, 93 residues) 1 ALTKAKPNFS SMSRSSGLMP ASSFQLKEFK SEPNMTGIIR NASGKAGHIL LPAPNGISSK 61 SCPRTSKFEC QNLSGLNTKG SSQKVESLLI SHT 3-phase translation of AGS-1 (-strand): . . . . . . 113400 ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTG M C G K L I E I L L F G R I P - C L N L C V G N - - R F Y F L G G S L S V - T - V W E I N R D S T F W E D P L V F K P . . . . . . 113340 AGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTG R G F G I Q I - T C E D K I L N - S H L E V L A F K F R R A R T R F - T D P I W E R F W H S N L D V R G Q D F E L I P F . . . . . . 113280 GTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGT V R V E E C A L P C H L H C E - F Q S C C G - K N V P C L A T C I A N D S S H V G A G R R M C P A L P L A L R M I P V M . . . . . . 113220 TGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACC W A H S - I P S I G N S R Q A L D Q K T G L T L E F L Q L E T R G R H - T R R P L G S L L N S F N W K L E A G I R P E D . . . . . 113160 TAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA - T W R R N L V W L - S K L R H G G E I W F G F S Q S S L D M E E K F G L A L V K A Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0109D11.1-_PGL-19_AGS-1_PPS_1 (113398 113120) (frame '0'; 279 bp, 93 residues) 1 VWEINRDSTF WEDPLVFKPE RFWHSNLDVR GQDFELIPFG AGRRMCPALP LALRMIPVML 61 GSLLNSFNWK LEAGIRPEDL DMEEKFGLAL VKA ... finished at: Tue Aug 29 00:21:52 2006