GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 12:13:31 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-b604F/C09HBa0278J12/C09HBa0278J12.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0278J12.1, from 1 to 102418, both strands analyzed. ... started at: Tue Jul 25 12:36:34 2006 EST library file: /tmp/cxgn-bacpublish-resources-LXfLnP/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 159 EST library file: /tmp/cxgn-bacpublish-resources-LXfLnP/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 309 ******************************************************************************** EST sequence 200 +strand 589 n (File: SGN-E292436+) 1 TAAAAAAAAA AAACAGAGGA AAATGGAGAA AATACAGCAC AAAACTGTCT CCGCTAATGG 61 AATCAAAATG CACGTAGCTG AAATCGGTGA AGGTCCAGCA GTTCTATTTC TACATGGCTT 121 CCCTGAGTTA TGGTATTCAT GGCGCCACCA ATTGCTTTAC TTTTCAAACA AAGGTTACAG 181 AGCTATTGCG CCTGATCTTC GTGGTTACGG AGACACTGAA ATTCCATCGG AAATCAGTAG 241 TTATACTGCT TTTCACATTG TTGGTGATTT GATTTCTCTG TTAGATATTC TGGATCTAGA 301 AAAAGTGTTC TTAATTGGGC ATGATTGGGG TGCTCTAATT GCTTGGTTTT TCTGTTTGTT 361 TCGTCCTGAT CGGATTAAAG CTTTGGTGAA TCTGAGTTGT GAGTTACGGC CCAGAAATCC 421 GTTGCGAAAA CCGATTGATT GCTTGAGGGA ATTGCTTGGT GATGACTATT ACATGTGCAG 481 ATTTCAGAAA CTGGGAGCTC ACAGCCCTAT TTAGTGGATG CAAAATTCAA GTCCCAACTA 541 ANTTTGTGGT GGGTGAGTTG GACTTGACAT ATAATATTCC TGGAATCAA Predicted gene structure (within gDNA segment 11627 to 6852): Exon 1 11007 10523 ( 485 n); cDNA 3 487 ( 485 n); score: 1.000 Intron 1 10522 7564 (2959 n); Pd: 0.993 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 7563 7462 ( 102 n); cDNA 488 589 ( 102 n); score: 0.990 MATCH C09HBa0278J12.1- SGN-E292436+ 0.998 587 0.997 C PGS_C09HBa0278J12.1-_SGN-E292436+ (11007 10523,7563 7462) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA ACAGAGGAAA ATGGAGAAAA TACAGCACAA AACTGTCTCC GCTAATGGAA 10948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA ACAGAGGAAA ATGGAGAAAA TACAGCACAA AACTGTCTCC GCTAATGGAA 62 TCAAAATGCA CGTAGCTGAA ATCGGTGAAG GTCCAGCAGT TCTATTTCTA CATGGCTTCC 10888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATGCA CGTAGCTGAA ATCGGTGAAG GTCCAGCAGT TCTATTTCTA CATGGCTTCC 122 CTGAGTTATG GTATTCATGG CGCCACCAAT TGCTTTACTT TTCAAACAAA GGTTACAGAG 10828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGTTATG GTATTCATGG CGCCACCAAT TGCTTTACTT TTCAAACAAA GGTTACAGAG 182 CTATTGCGCC TGATCTTCGT GGTTACGGAG ACACTGAAAT TCCATCGGAA ATCAGTAGTT 10768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGCGCC TGATCTTCGT GGTTACGGAG ACACTGAAAT TCCATCGGAA ATCAGTAGTT 242 ATACTGCTTT TCACATTGTT GGTGATTTGA TTTCTCTGTT AGATATTCTG GATCTAGAAA 10708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTGCTTT TCACATTGTT GGTGATTTGA TTTCTCTGTT AGATATTCTG GATCTAGAAA 302 AAGTGTTCTT AATTGGGCAT GATTGGGGTG CTCTAATTGC TTGGTTTTTC TGTTTGTTTC 10648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGTTCTT AATTGGGCAT GATTGGGGTG CTCTAATTGC TTGGTTTTTC TGTTTGTTTC 362 GTCCTGATCG GATTAAAGCT TTGGTGAATC TGAGTTGTGA GTTACGGCCC AGAAATCCGT 10588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTGATCG GATTAAAGCT TTGGTGAATC TGAGTTGTGA GTTACGGCCC AGAAATCCGT 422 TGCGAAAACC GATTGATTGC TTGAGGGAAT TGCTTGGTGA TGACTATTAC ATGTGCAGAT 10528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGAAAACC GATTGATTGC TTGAGGGAAT TGCTTGGTGA TGACTATTAC ATGTGCAGAT 482 TTCAGGTATT TTTTTCTCTA CTGTTCAAGT ATATTTACCA GATATTTTTC GAAATTGAAT 10468 ||||| TTCAG..... .......... .......... .......... .......... .......... 487 TAGATCTAAT ATTCATTTGT TTCGCTTTTT TTTCTTAAAA AACTCCGAGA TAGTTCTCTT 10408 .......... .......... .......... .......... .......... .......... 487 TCCATTCATT TTTTTTTTTG GGTATATGAA TGAAAATAAG GATGAAATTT TGATAGCTGG 10348 .......... .......... .......... .......... .......... .......... 487 TATTCTTTGA GCCGATCAAA AATTGTTTCG GATTGAGCTA TAAGGATGTG GATGGTAGGG 10288 .......... .......... .......... .......... .......... .......... 487 AGGAAGGTGT TTTTTTTTTT TTTTTAATTT GGTTTATGGA AACGTAAGAC ATCCTAAACT 10228 .......... .......... .......... .......... .......... .......... 487 AGTATAATCG TAACTATTGT TAAACGAATT GGTAAATTTT TAAAAATAAA TATACAAAAT 10168 .......... .......... .......... .......... .......... .......... 487 ACATGATTTT AAAACTCGTC AACAAAGTAT ATTTAGTCCA ATAGCAATTA TGAGCCTTTT 10108 .......... .......... .......... .......... .......... .......... 487 AACATTATTG CCTCTTGGGC GATTTTACTC TTTATCTTTT AGAGAGTAAG ATAGAGATTG 10048 .......... .......... .......... .......... .......... .......... 487 TCTTTTTCAA ATATTTTCTA TTCTATTATT CTTTGCTTTC CAAATACTCT AAATATTATA 9988 .......... .......... .......... .......... .......... .......... 487 TTATTATTTT GTAATTCACA TATTAATTTT CATATAAGGA TATTAATAAA ATTTCTAATA 9928 .......... .......... .......... .......... .......... .......... 487 TTCATAATTT TTAAAAAATA TAATATAATA TCCTTAAGAA TATATTATTT AATATATAAT 9868 .......... .......... .......... .......... .......... .......... 487 ACATCCTAAA TTAATAATAT TTAAGATATT TTTTTTCAAT TTTCGTCACT TCAAGTGAAT 9808 .......... .......... .......... .......... .......... .......... 487 ATGATTTGAT GAATTTTCGT TATGAAAGAT CCACAAAATT CAAATTTAAA AATATAACAC 9748 .......... .......... .......... .......... .......... .......... 487 ATAACTTAAT AATTTAAATT CAATATAACA ATACATTACA TAACACCATA ATTTTAAAAT 9688 .......... .......... .......... .......... .......... .......... 487 TACAACAACA ACAATAATAA TAATAATTTA ATAATCAGGT AGGTCCTTTA CAAATTTAAC 9628 .......... .......... .......... .......... .......... .......... 487 AATATTCGGA AAAGATTAAT GTATGATCTA AAGAAGTGGT GATTGTAATT GCAGTTTATC 9568 .......... .......... .......... .......... .......... .......... 487 TTATTGGTTG TTTTTTACAA TTATTTGAAA TTGTTCTTTA AAAATTCAGA ATAAAATGTA 9508 .......... .......... .......... .......... .......... .......... 487 AATCTATATT AGATAAAGAA TTTGAAAAGA ATAAACTCTA TATTACATGA AAATTATATA 9448 .......... .......... .......... .......... .......... .......... 487 GGGTGATTAA TTGGAAAAAA AATAAAGAAT AGATTTAAGT AACGATATAA TATTGAGGTG 9388 .......... .......... .......... .......... .......... .......... 487 AGATAATAAG ATTCTTTTTT AGAAAAGTAA AATAGAGATT TGAATTGGAG TTGATTGTTT 9328 .......... .......... .......... .......... .......... .......... 487 GGAGAATTAG TGAAGTCTAT ATTTGAAAGT AAAATAGAGG ATAAGGATGA ATATGTCTAT 9268 .......... .......... .......... .......... .......... .......... 487 GAATAAAAAT CTACAAACTT CAAATTTTGA ATATTCATTT GACTTTTCTT ATAAAAGTAG 9208 .......... .......... .......... .......... .......... .......... 487 AGAAAACCTC CGATTTTCTC CATAAAATAG AGAAAATAAG TTTTACGAGC AACATTTCAC 9148 .......... .......... .......... .......... .......... .......... 487 ATGATAACGT TTTTTTCCAT GCTCCCACAC ACCTCATCTT TACCTCACAC CCTCATAGCC 9088 .......... .......... .......... .......... .......... .......... 487 CTCATCCCAC TCTTACTCCC ATAAGTATTT ATCAAAATTA GCTATGCTAA TATTTTTTAC 9028 .......... .......... .......... .......... .......... .......... 487 TTACGTATCA AACATAAAAA AATAAATAAC AAACTCACTA ATTTTTTTAA AAAAAACATT 8968 .......... .......... .......... .......... .......... .......... 487 TTTTAAGAAA ATATCTTCAT TCAAACAAAA CACCCCAAAG AAATATCTTA TATTAAGTAA 8908 .......... .......... .......... .......... .......... .......... 487 ATTTCTTAAA TTCTTGTTTG TTCGTTTTTA TGAGCTCTCA CTTTCAAGTT TGTGCTCACT 8848 .......... .......... .......... .......... .......... .......... 487 TAGTTTCCTC CAATGAAGAG AGCAAACGGT TTAATGACAT GTCGTTCATT TCTACTTATT 8788 .......... .......... .......... .......... .......... .......... 487 AAACATTAAT TAAATTTCTG TTTTTACTTA TTATTTTTAT AAATTAATAT TAAATTAATT 8728 .......... .......... .......... .......... .......... .......... 487 TATTTATGTT AAATTAATGT CTTTTTAAAC AAATAGCGAG TAAATACAGA AGCATATTCT 8668 .......... .......... .......... .......... .......... .......... 487 TGAAATAAAA GCACTGAAAT AAACACTCTA GCTGGATTCA GACTCAGATT TCACAATTCT 8608 .......... .......... .......... .......... .......... .......... 487 CCACCTTGTA TCGGCATCAC AATAACACTC TTATACTTCT CATGGGGCAC TATTAATTAC 8548 .......... .......... .......... .......... .......... .......... 487 ATCCTTATTT CTGTCAGTTT CTCCAAATAA ATATATGTAT ATATTAGACA TAATTTTTTT 8488 .......... .......... .......... .......... .......... .......... 487 TTCGAAATTA ACAGATACTA CATATTTTTG TGATTTTCTA ATAGTATGCT ATTATTTAGA 8428 .......... .......... .......... .......... .......... .......... 487 AACCTGGGGA AGTGGAAGAG GAATTTGCTT CAATTGATAC TGCAAAACTC ATCATAGGAT 8368 .......... .......... .......... .......... .......... .......... 487 TTCTTTCTTC ACGTGATACA CGTCCACCTT GCATTCCCAA AGAGATTGGC TTTCATCAGG 8308 .......... .......... .......... .......... .......... .......... 487 CCTTTGCTCA GTTACCAGCA GCATTACCTT CATGGCTAAC ACAAGAAGAT GTCAATTATT 8248 .......... .......... .......... .......... .......... .......... 487 ATGCTGAAAA ATTAAACAAA ACTGGCTTTA CTGGAGGATT GAACTACTAT AGAAACATGG 8188 .......... .......... .......... .......... .......... .......... 487 ACAAGTATGT ATACCCCCAA TATACTTTAT ACGTTTTAAT TTGTCTGTCT AATTCTTGAT 8128 .......... .......... .......... .......... .......... .......... 487 TTGATACAGT TTTAGAAAAA AGTAGAGAAA GCTTTTGAAT GTTATATAAT TTTAAACGAA 8068 .......... .......... .......... .......... .......... .......... 487 AAAATCTATG AAATATATCA CTTTTCAATT TTCCTAAAAT TAACGTTTAA TTTGTTTATG 8008 .......... .......... .......... .......... .......... .......... 487 AAATTATGAA TAGAATTTAA ACTTTAATTT CAAATCATGA TTTAAAGTTT CATATTTTCT 7948 .......... .......... .......... .......... .......... .......... 487 TTGAAGAATA ATAGGATTTA AAATTTCTAA GTTGTGATTT CAATATATAT ATTTTAAAAA 7888 .......... .......... .......... .......... .......... .......... 487 TATAATAAGT TTCTATTTTG TGAAAAAAGA TCTATTGTTT TAAATTCTAC AATAAAAACT 7828 .......... .......... .......... .......... .......... .......... 487 CATGCTTAAT GTAAATAGAT TATTTTTACC ATGTGGAATA ATCTTACTAG AGAATATTAG 7768 .......... .......... .......... .......... .......... .......... 487 TTATTACTAC TATGGTTGAT ATTTTGAACG TTTATAATAA CATATGATCA TAAATATTAT 7708 .......... .......... .......... .......... .......... .......... 487 CTTATTAAAG ATTGTATAAG AGTGAATTCG ATAGTTTTCA CATATTGTTG AATTTTCATG 7648 .......... .......... .......... .......... .......... .......... 487 TTTACGAGAA TAAAATATAA TAAAAAATTT AATTACATAT TCAAATAAAA ATTTCAACTT 7588 .......... .......... .......... .......... .......... .......... 487 CAAATTAATC TGATTTCGAT GCAGAAACTG GGAGCTCACA GCCCTATTTA GTGGATGCAA 7528 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....AAACTG GGAGCTCACA GCCCTATTTA GTGGATGCAA 523 AATTCAAGTC CCAACTAAGT TTGTGGTGGG TGAGTTGGAC TTGACATATA ATATTCCTGG 7468 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AATTCAAGTC CCAACTAANT TTGTGGTGGG TGAGTTGGAC TTGACATATA ATATTCCTGG 583 AATCAA 7462 |||||| AATCAA 589 hqPGS_C09HBa0278J12.1-_SGN-E292436+ (11007 10523,7563 7462) ******************************************************************************** EST sequence 138 -strand 730 n (File: SGN-E546506-) 1 GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 61 AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATGA GGATCGGAGT GCCACGTTCC 121 GGCACCAGGA TAGAAATAGA GGATCGGAGT GTCACGTACC GACACAAGAG GAAGAAAGAT 181 AATGAATCTT GAAAGATAAT GAATATACTC AATCTAATGA ACTTAATTCC CAAATGAGTA 241 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACTCGGTTGT AGTTATTGAT GAATTCATGG 301 TGTTATTGCT ACATGTTGAG TATTGTAGTT GATTTACATT ATTATTGATA TATACTGTTC 361 CCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACGTGT GGTTGTACTG ACCCCTACTT 421 TCATGTTTTC CTCTTTGTTA TTTGTGTAAT GCAGCAAACG TTCCGTCAAC TTCAACTCAA 481 CAGTAGATCT AGCCAGTCTT CACTTCATCG GAAAATTCAG GGTGAGCTAA TGCGTCTAGC 541 TTGGACTGGG TCTTCTTCTT CAAGTCTTGA TGCCTTGAAT TTCCGGCATG GACTAGCTTT 601 TTAGTTATTT TGTTCTTAGA CATTCCTAGT TAAGTAATTT GAGATAGATG TTCTTGTGAT 661 GATGACTTCC AGATTTTGGG GATAATAATA ATAGTATTGA ATTGTTTTTA TTAAAAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 14034 to 10334): Exon 1 12911 12906 ( 6 n); cDNA 86 91 ( 6 n); score: 0.667 Intron 1 12905 12036 ( 870 n); Pd: 0.320 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 12035 11404 ( 632 n); cDNA 92 709 ( 618 n); score: 0.814 Intron 2 11403 11018 ( 386 n); Pd: 0.000 (s: 0.78), Pa: 0.983 (s: 0) Exon 3 11017 10997 ( 21 n); cDNA 710 730 ( 21 n); score: 0.714 MATCH C09HBa0278J12.1- SGN-E546506- 0.814 659 0.903 C PGS_C09HBa0278J12.1-_SGN-E546506- (12911 12906,12035 11404,11017 10997) Alignment (genomic DNA sequence = upper lines): ACGACGGCCC GTCACAGGCT ACGTAATTCA CACTGGGTCG GATTTCTGTT AAGTAATTTA 12852 || | | ACCAGG.... .......... .......... .......... .......... .......... 91 AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT ATTAATAAGT 12792 .......... .......... .......... .......... .......... .......... 91 CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA TTATTGCCAT 12732 .......... .......... .......... .......... .......... .......... 91 CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA TAAGAAAAAG 12672 .......... .......... .......... .......... .......... .......... 91 AAAAGAACAG AAAGAGAGAG AAGGAGAATT GATAGAGAGA GACGAATGAA GAGGAAAAAC 12612 .......... .......... .......... .......... .......... .......... 91 AAAAGCTTGG GAAATTTGCT TGCTTGATCA CGAATCTTCG GTGGAGGTAG GTTATGGTTT 12552 .......... .......... .......... .......... .......... .......... 91 CTTTTACGAT ATTCGTAATA AACTCTTAAT AGCGAATGAT ATGTATTGAT AATATTGTAA 12492 .......... .......... .......... .......... .......... .......... 91 ACCCTGCTAT GTGCTTAATT GTATGCTTGC ATGAATGAAA TTATATAATT GTGATTATAT 12432 .......... .......... .......... .......... .......... .......... 91 AAGCATGATG AAGTTATTGA ATCCCAATAT CTTGCAAAAC CCTAATCTCT TTGTTAATGA 12372 .......... .......... .......... .......... .......... .......... 91 TGAGGCCTTG GTATAAAAGA AGGCGTGATG AACTAAAATA ATGAGATTGA TGATGTCTTG 12312 .......... .......... .......... .......... .......... .......... 91 GTAAGAAAGA AGGCTTGATG AATTGATAGA AGGAGATTAG GGGATCGGGT GTCAAGAACA 12252 .......... .......... .......... .......... .......... .......... 91 GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG GGGATCGGGT 12192 .......... .......... .......... .......... .......... .......... 91 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 12132 .......... .......... .......... .......... .......... .......... 91 GGGATCGGGT GTCACGAATC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC 12072 .......... .......... .......... .......... .......... .......... 91 GTAGATTTAG GGGACCGGAG TGTCACGTTC CGACACATAG TAGTAGGGGA TCGGAGTGTC 12012 |||| | | | ||| |||||||| | .......... .......... .......... ......ATAG -AAT-GAGGA TCGGAGTGCC 113 ACGTACCGAC ACAAGAGGAT TAATGAATAT GAGGGAGCGG AGTGTCACGT ACTGACACAA 11952 |||| ||| | || |||| | | |||| || ||| ||| |||||||||| || ||||||| ACGTTCCGGC AC--CAGGA- T-AGAAATA- GA-GGATCGG AGTGTCACGT ACCGACACAA 167 GAGAAATAAA GATAATGAAT CTTGAAAGAT -GTTAATATA CTTAATCTAA ATGAACATAA 11893 ||| || ||| |||||||||| |||||||||| | |||||| || ||||| | |||||| ||| GAGGAAGAAA GATAATGAAT CTTGAAAGAT AATGAATATA CTCAATCT-A ATGAACTTAA 226 TTTCCAAATG AGTATGATAT TGAGGCTTGA GTCCTCATGT GTGAACTTGA CGGTAATTGT 11833 || ||||||| |||||| ||| |||||||||| |||||||||| ||||||| | ||| || | TTCCCAAATG AGTATGGTAT TGAGGCTTGA GTCCTCATGT GTGAACTCGG TTGTAGTTAT 286 TAATGATATA GTACTTGCTG TTGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA 11773 | |||| || || | |||||||||| |||||||| ||||||| || || ||||| TGATGA-ATT CATGGTGTTA TTGCTACATG TTGAGTATTG TAGTTGA-TT TACATTATTA 344 CTTGGTATAT ATTGATTTCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG TACCCGTGTT 11713 ||| ||||| | || | || |||||||||| |||||||||| |||||||||| ||| ||| -TTGATATAT ACTGTTCCCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG TACGTGTG-G 402 TTGTACTGAC TCCTACTTTT ATGTTTTCTT CTTGTTTAAT TGTAGAGTGC AGCAAACGTG 11653 |||||||||| |||||||| |||||||| | ||| ||| | ||| | ||| ||||||||| TTGTACTGAC CCCTACTTTC ATGTTTTCCT CTTTGTTATT TGTGTAATGC AGCAAACGTT 462 CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA GTAC-TCCGG ATA-TCAGGG 11595 |||||| ||| | |||||||| ||| ||||| |||||||||| | | || | | | |||||| CCGTCAACTT CAACTCAACA GTAGATCTAG CCAGTCTTCA CTTCATCGGA AAATTCAGGG 522 TGAGCTAATG CTTCTAGTTT GGACTGGATC TTCCTTTTCA TGTCTTGATG CCTTGAAGTT 11535 |||||||||| | ||||| || ||||||| || ||| | |||| ||||||||| ||||||| || TGAGCTAATG CGTCTAGCTT GGACTGGGTC TTCTTCTTCA AGTCTTGATG CCTTGAATTT 582 CCGGCATGGA CTAACTTTTA TGTATTTTTA GGTTCTTAGA AACTCTTAGA TTTAGTAATT 11475 |||||||||| ||| ||||| || | ||| ||||||||| | || ||| || ||||||| CCGGCATGGA CTAGCTTTTT AGT-TATTT- TGTTCTTAGA CATTCCTAG- TTAAGTAATT 639 TGAAGTAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GAAATAATAG TTATTGAATT 11415 ||| ||||| |||||||||| |||||||||| |||||||||| | |||||| | || | ||| TGAGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG G-GATAATAA TAATAGTATT 698 GGTTTTTATT AATGAGTTTA AGTCTTCCGC ATTACTTTAT GTTGATATTA CATTAAAATG 11355 | || | || GAATTGTTTT T......... .......... .......... .......... .......... 709 TTAAGGTTTA GATTGGTTGG TTCGCTCACA TAGGAGGGTA AGTGTGGGTG CCAGTCGCGG 11295 .......... .......... .......... .......... .......... .......... 709 CTCGGTATTT GGGTCGTGAC ACGACATAAC TCTATGGGAT CGTTTGGCTG GTAATAAGTT 11235 .......... .......... .......... .......... .......... .......... 709 ATTTCAAAAT TAATTATCCT GAAACAATTT ATTCCCTCAC TGTCCGATAA ATAATCTCAA 11175 .......... .......... .......... .......... .......... .......... 709 ACTTTTTAAT CTCATAACTA TTTATTCTTA TCCGTCACAC CCAATGAGCC CGTGACAAAC 11115 .......... .......... .......... .......... .......... .......... 709 AACCCTAACA CACCACACTT ATTTTTGGCA AAGAAGGAAC AACAACAAGT TAACATTATA 11055 .......... .......... .......... .......... .......... .......... 709 AAAATAAACT GAAAAAGCTC TATCCATGAA AAAACAGGGG AAAGAGTAAA AAAAAAAA 10997 ||| | ||| |||||||| .......... .......... .......... .......ATT AAAAAAAAAA AAAAAAAA 730 hqPGS_C09HBa0278J12.1-_SGN-E546506- (12035 11404,11017 10997) ******************************************************************************** EST sequence 13 -strand 679 n (File: SGN-E370357-) 1 TTGGAGGTGG TGTTGCCATG GTGGATTGGG GGAAAAATGG AATTGGACTT TGTAGGAGGA 61 GAAATGGGCA TTTACTTACA CAAATGGCCA CTATTTACAA GAAAACACAT CAGAAATTCG 121 AGGAAAATTC TGCATCCGTA GGCAAATTTG AAAAATTTTA CAAATGGCAG AGGTGTAATC 181 AATCAATAAT ATTTGGGTGA CAGCCGAATG ATTAATTGAC ACTCGAATAA AGCAAACGTA 241 CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA TTTCAGTGTG 301 AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 361 GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT TAGTAATTTG 421 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG GATAATAATA GTTGTTGAGT 481 TTTTAGAAGT TATTTAATTG ATTTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTCCG 541 TCATTATATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG AGGGTAAGTG 601 TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACATTAAA GATTATCGAA TTCATAATAT 661 AATTGTAAGA AAAAAAAAA Predicted gene structure (within gDNA segment 16108 to 10002): Exon 1 11662 11379 ( 284 n); cDNA 231 512 ( 282 n); score: 0.826 Intron 1 11378 11322 ( 57 n); Pd: 0.000 (s: 0.62), Pa: 0.892 (s: 0) Exon 2 11321 11312 ( 10 n); cDNA 513 522 ( 10 n); score: 0.800 PPA cDNA 667 679 MATCH C09HBa0278J12.1- SGN-E370357- 0.826 294 0.433 C PGS_C09HBa0278J12.1-_SGN-E370357- (11662 11379,11321 11312) Alignment (genomic DNA sequence = upper lines): AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA GTACTCCGGA 11603 ||||||||| ||||| |||| | ||||||| | |||||||| |||||||||| || ||||| AGCAAACGTA CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA 290 TATCAGGGTG AGCTAATGCT TCTAGTTTGG ACTGGATCTT CCTTTTCATG TCTTGATGCC 11543 | |||| ||| |||||| ||| ||||| |||| |||||||||| | | |||||| |||||||||| TTTCAGTGTG AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC 350 TTGAAGTTCC GGCATGGACT AACTTTTATG TATTTTTAGG TTCTTAGAAA CTCTTAGATT 11483 |||||||||| |||||||||| | ||||| | | || ||| || |||| | |||||||| | TTGAAGTTCC GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT 410 TAGTAATTTG AAG-TAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG AAATAATAGT 11424 |||||||||| | | |||||| |||||||||| |||||||||| |||||||||| |||||| | TAGTAATTTG AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG -GATAATAAT 469 TATTGAATTG GTTTTTATTA ATGAGTTTAA GTCTTCCGCA TTACTTTATG TTGATATTAC 11364 ||| | ||||||| | | | ||||| | | || ||| | AGTTG-TTGA GTTTTTAGAA GTTA-TTTAA TTGATTTTCA TTAAT..... .......... 512 ATTAAAATGT TAAGGTTTAG ATTGGTTGGT TCGCTCACAT AGGAGGGTAA GT 11312 ||| ||| || .......... .......... .......... .......... ..GAGTTTAA GT 522 hqPGS_C09HBa0278J12.1-_SGN-E370357- (11662 11379,11321 11312) ******************************************************************************** EST sequence 368 +strand 666 n (File: SGN-E368629+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTTA TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT 541 AGGCTCTTAG ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT 601 CCAGATTTTG GGAAATAATA GTTATTGAAT TGGTTTTTAT AAAAAAAAAA AAAAAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 18993 to 10536): Exon 1 17969 17926 ( 44 n); cDNA 305 347 ( 43 n); score: 0.659 Intron 1 17925 17081 ( 845 n); Pd: 0.740 (s: 0.66), Pa: 0.000 (s: 0.58) Exon 2 17080 17024 ( 57 n); cDNA 348 403 ( 56 n); score: 0.596 Intron 2 17023 13376 (3648 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 13375 13347 ( 29 n); cDNA 404 430 ( 27 n); score: 0.724 Intron 3 13346 12914 ( 433 n); Pd: 0.900 (s: 0), Pa: 0.988 (s: 0) Exon 4 12913 12906 ( 8 n); cDNA 431 438 ( 8 n); score: 0.375 Intron 4 12905 12368 ( 538 n); Pd: 0.320 (s: 0), Pa: 0.415 (s: 0) Exon 5 12367 12362 ( 6 n); cDNA 439 444 ( 6 n); score: 0.667 Intron 5 12361 11668 ( 694 n); Pd: 0.084 (s: 0), Pa: 0.998 (s: 0) Exon 6 11667 11656 ( 12 n); cDNA 445 456 ( 12 n); score: 0.500 Intron 6 11655 11589 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 7 11588 11400 ( 189 n); cDNA 457 646 ( 190 n); score: 0.889 Intron 7 11399 11018 ( 382 n); Pd: 0.000 (s: 0.94), Pa: 0.983 (s: 0) Exon 8 11017 10998 ( 20 n); cDNA 647 666 ( 20 n); score: 0.700 MATCH C09HBa0278J12.1- SGN-E368629+ 0.821 365 0.548 C PGS_C09HBa0278J12.1-_SGN-E368629+ (17969 17926,17080 17024,13375 13347,12913 12906,12367 12362,11667 11656,11588 11400,11017 10998) Alignment (genomic DNA sequence = upper lines): AAATAAATTT GTGAAATCAA TTTTCACTTT TGGTTGTTTC GGAGGTTATT TTTCCAGGTT 17910 ||| | |||| ||| | ||||| ||| |||||| ||| AAAAATATTT TCAAAACGAC TTTTCTGTTT AAATTGTTT- TGAG...... .......... 347 TCAAGTTCTG ACTATTGTTC TTGAATCTAT TCAATCTCCT CAACTTTTAT AAGTGTAGTA 17850 .......... .......... .......... .......... .......... .......... 347 GCTCTTCTTC AAGGTATTAT GAGAAATAAT TTCGGACGAC AAATAATTTG GGACGGAAAG 17790 .......... .......... .......... .......... .......... .......... 347 AGTATTTCTT GTTTGTTGCC ATGCAATTTC ACAAAAGAAA AATCCAAAGC TTGCCGTTGG 17730 .......... .......... .......... .......... .......... .......... 347 TGTGGCCGGT TAAGTTTTAC CAAATGTGGA CTTTTTAAAA CTTGATATTT AATTTTTTTT 17670 .......... .......... .......... .......... .......... .......... 347 TTTTTTAGTT TTTATTTGAT ACATCATTTA AAAAATTAAT TTTACTATGT CATTCATTAT 17610 .......... .......... .......... .......... .......... .......... 347 TACTGCAGAG TCATTTCACT ATTCAAAGAA TGAATTAAAA TAATTATTCC ATAGAAGAAA 17550 .......... .......... .......... .......... .......... .......... 347 AAATAAATAT AAAATAATCA GTATCACTTA AGCCTTATTT GTTTGCACTT AATGGAGGTT 17490 .......... .......... .......... .......... .......... .......... 347 TAAATCTTAA TTTATTCAGA TTCAGCTCAT TAAGCACTTT TGATTTTTAG GTCTGAATTT 17430 .......... .......... .......... .......... .......... .......... 347 GATTCATTCC ATTAAGTTCA TTTGTTTTAT TTTTAAAAAA AATATCTGAT CTGAAGAGGT 17370 .......... .......... .......... .......... .......... .......... 347 CTGAATGAGG TCTGAACGAA TCAAATATGT AGGTGACTCT CAACGACATT CAGATTCATC 17310 .......... .......... .......... .......... .......... .......... 347 CCATTAAGTT TTTAACTTTT TATTTTTTTT TTATCAAAAG TGATATATTT TGTTGAAATG 17250 .......... .......... .......... .......... .......... .......... 347 AAAATTTTAT AATATTTTAT TAATATAATG TTCAATATCA CTTTCATATC AAGATATTGA 17190 .......... .......... .......... .......... .......... .......... 347 AAGCAAACAA CATTAATTAT TTAGTGCTCA GATTTAGAGA CCGCATCTTA ATATTCGGAT 17130 .......... .......... .......... .......... .......... .......... 347 CAAAACACTC AAATCTTAAT ACAAATCTTA ATATTCAGAT ATGTATTCAA TTTAGATCAC 17070 | | || | | .......... .......... .......... .......... .........A ATGAGTTTTC 358 TTAATTTTAA TGAAACAAAT AGGGCCTTAA TCTTTAATTT GAACAAGTAA AGGTGAATAT 17010 || ||||| | ||| | || | | | || | || | ||| || TTGATTTTTC TTAAAAATTA AGTGGC-GAC TCCTAAAGTC GAAAAA.... .......... 403 ATATCTTAAT ATAATAGATA AATAAAAAAA GATAGAGAGA TTATTTATTT GACTATTAAT 16950 .......... .......... .......... .......... .......... .......... 403 CATTTAATGA AAAATAAAAA AAATATTAAA TTAAATAAAT TCTAATTATA AAGAAAAAAA 16890 .......... .......... .......... .......... .......... .......... 403 ATATGTCATA TAAATTGGGA TGAAAAAAAT TGTTAACAAA TTAAAATAAA CAAAAAAATC 16830 .......... .......... .......... .......... .......... .......... 403 AAATCTAAGT GATAAATAAA AAAAATAGAT TTTTGACCAA TTAAATGACA ATTCAATGTC 16770 .......... .......... .......... .......... .......... .......... 403 CTTATCCTAA ACATCTGTGC TTGCCGGCCT TTAGGGTATT TTTGGAGTAC AGTTAAAAAG 16710 .......... .......... .......... .......... .......... .......... 403 ATTATTTGTC AATTAGTTGG GAATAAGTTA TCCTCTTTGG TGTAGTTATA TAATCAGGTT 16650 .......... .......... .......... .......... .......... .......... 403 CGTCGAAATA AAATATTGTG TATAAAATAA AATAATATAC TAAATGAAAA ATAATATCAT 16590 .......... .......... .......... .......... .......... .......... 403 ATTTTAAATA CCCTTAGTTC AATAAGCTAT TGTAGCTTAG GGGTTTTAGA TGATTGAAAT 16530 .......... .......... .......... .......... .......... .......... 403 AAGATACTGA TCACGTGTTT AAATTTTAAT TGTCTTACTT TTTGAAAAGA ACTTTTATTA 16470 .......... .......... .......... .......... .......... .......... 403 TGCTATTTTT GAATATCATT TGTAAAATTT TTGATTCCGC AACTGATTAT TCTGATATAA 16410 .......... .......... .......... .......... .......... .......... 403 GATATTTCAC TATATATATG AGATAACTTA TTTCATTACT AAGATATTAA TAATGAGATA 16350 .......... .......... .......... .......... .......... .......... 403 AATATTTTCA AAATTGTCTA ATACCACTAG CCAAGCAAGC AACAAAATAA TCATACAATT 16290 .......... .......... .......... .......... .......... .......... 403 TATCATTCAA ATTATTTGTA TATCTCATAT CAAAGGACAT CTAAAGATTA TGTTCATTCA 16230 .......... .......... .......... .......... .......... .......... 403 TGCATTAGGA ATTGTGCTAT TTTCCCATCT CTCATTATCG ACCTATTCAT TTTCAATTTG 16170 .......... .......... .......... .......... .......... .......... 403 AATAATACAT GAGAAAAGAA TCATTTCATA AGAAAAAAAG ATTGTTCTAT TGTCCCATCT 16110 .......... .......... .......... .......... .......... .......... 403 AAAAAAAAGA AAAGAAAACC TTCTCATAAT TCCACTTGTG TCTCATAAGT CATAAACATT 16050 .......... .......... .......... .......... .......... .......... 403 TATCCGTCCG GTATTATTTG TCATAGTTTC TATTTTTGGA GTTAAACTAT AAAATTTTTG 15990 .......... .......... .......... .......... .......... .......... 403 ACTAACATTT TAAAATGTAT TTTTTCATCA TATTAATATG CAAAAAAAAT ATAATTTATA 15930 .......... .......... .......... .......... .......... .......... 403 ATACTTTTCA TATAATTTCG AATATTTATT TTTTTGTTTA AAATATCGAA TTAATATAAT 15870 .......... .......... .......... .......... .......... .......... 403 CTAATTTAAC TATAAATATT AGTCAAATTG ACTTTCGATA AGCATAATAT GACAAATAAT 15810 .......... .......... .......... .......... .......... .......... 403 TTTGAACAGA GAGAATACTA TTTTAGTAGT TGCCTTTTAA TTCAATAACT CATAATTATA 15750 .......... .......... .......... .......... .......... .......... 403 TGACTTCTCT AATTTCTATA ACTCCAAAAT TGATTACAAA AACTTGCTCG TGAAATTAAT 15690 .......... .......... .......... .......... .......... .......... 403 GTTCTATTTT AATTTTATGT TTGCTTGTTT AATAACATTA TGGAATTATT AAGGTATTGA 15630 .......... .......... .......... .......... .......... .......... 403 CGTATTATTG ATGATTTATT GATTATTGAT CATTATCGGT TCGATTATCA ATTTAGCCGT 15570 .......... .......... .......... .......... .......... .......... 403 TAAGATTTAA AAAATTAATT AAATTAATGA AAAATACTCA AAAACAAGGT GACAAATCCA 15510 .......... .......... .......... .......... .......... .......... 403 ATGAATCATA TATATGAGTT CACAAGTTGC ATCTTGTTGA AAAAACAAAG AATTTTACAA 15450 .......... .......... .......... .......... .......... .......... 403 TGTAGAATAA CCAAGATTTT GAGATAAACT AATAGAAACA GGAAACTAAA CTCTCTTGAC 15390 .......... .......... .......... .......... .......... .......... 403 ATATATGCAA ATGCATAAGT ATAATATGTA ATTATCTAAC CGATATACAT ATACAATTCG 15330 .......... .......... .......... .......... .......... .......... 403 TCTCTCTCCC ATTCTTTGCC CTCTCTCTTT GCCTCTCTCC TCTCTCTTCC AGTATCGCTC 15270 .......... .......... .......... .......... .......... .......... 403 TCCTCTCACC TCCCTGTAAC TATAATTATG AATTGTAATT ATCAACCTAT TCAGACTATT 15210 .......... .......... .......... .......... .......... .......... 403 TTAGTTGCTA TCTGTGAAAG TTTCTCTATT TTAATCAATA TTTTTAAATA TATCTCGAAA 15150 .......... .......... .......... .......... .......... .......... 403 AGAAAAGAAA AAAAATAAAA AATATCACAT AAATTAAAAT ACGAAACTTC TAATATTCAT 15090 .......... .......... .......... .......... .......... .......... 403 ACCTGGTAAT TAGCCTAATT TAGCATCACT TTTGAATGTT AGATCATAAG GATGGAATTT 15030 .......... .......... .......... .......... .......... .......... 403 TCCGATGTAC AAAACAGAGT TGCTGGAATA TTGTGATAAT AGATATCAAA ATTTACTCTG 14970 .......... .......... .......... .......... .......... .......... 403 ACATCGTCGC AATTCTCGAA AATCATTCTT TGTGAGTAAC CTTTAGCTAA CAACGCCGTG 14910 .......... .......... .......... .......... .......... .......... 403 ATGTTAGAGG TGGTGTCGTG AGATGTGCCA GAGTGAACAT ATAATCGATT TGGCTGAGTC 14850 .......... .......... .......... .......... .......... .......... 403 GACGCTGTCA TCGACGCAAA CCACCAGTCG AACACTTTAT ATTCAAAATG ATATAAATAT 14790 .......... .......... .......... .......... .......... .......... 403 AATTATTTAA TTGACTATTG AATTATCAAT TAATTCATTA AAAAAAAATT TCAATTCATT 14730 .......... .......... .......... .......... .......... .......... 403 AAAATCAATA ACCCAATAAA AAAAATAAAA CCATTATCCG AACCACTAAA CAATAACCCA 14670 .......... .......... .......... .......... .......... .......... 403 TTATTGATAG TTTCGATTTT GATTCAATTT AAGTTAGGGT GGTGGACATG TTAGTTGATC 14610 .......... .......... .......... .......... .......... .......... 403 TGACAATGTA TATTTAATTT TTAATTATTC AAAACATGTA ATCTGAATTG TTAAAATTAA 14550 .......... .......... .......... .......... .......... .......... 403 TAAAAGAATT TAATACTAAA TCAAAAAAAA AAAAATGAAG AGTCAGTAAT TCTAACACCT 14490 .......... .......... .......... .......... .......... .......... 403 TGAAGAATTA TGTATATCAC AAAAGTCAAA ATTATAAGTT ACATATTTAA AAATAATATA 14430 .......... .......... .......... .......... .......... .......... 403 AAATTTAAAT GATTATTTTG AAAATATTGA GCCTCTTCAT TTGCTATGTT CTTGGTTCAA 14370 .......... .......... .......... .......... .......... .......... 403 TAGCAATTCA ATTCCTCCTT ATGTCTATTA AGTATTAATA GCATCCTAAC AATTTATCAA 14310 .......... .......... .......... .......... .......... .......... 403 TTTCTAGCTT ATGAAATAAC ACATGTCATT ATTTTTTAAC GGTGATTATG TAAATTCATT 14250 .......... .......... .......... .......... .......... .......... 403 GTTGAAACGT GATCGAATTA TAATTGGCCA TCGTTATCAA TTTTTTATTA AAAGTTCAAA 14190 .......... .......... .......... .......... .......... .......... 403 CAAAATAATT CAATCTTTAT TCAGAATTTT GATTTTTATA TTAAAATAAT TAATGATAGC 14130 .......... .......... .......... .......... .......... .......... 403 GGTCAATTAT AATTCGGTCA CATCATCAAT TTATTTAATT ATGATTTTTT TCTCCAGAAT 14070 .......... .......... .......... .......... .......... .......... 403 TATGATTTTT TTATTTAAAA AAATTGATGA CATGGCCGAA TTATAATTGG CCACGTGTCA 14010 .......... .......... .......... .......... .......... .......... 403 AAAATGATTT TGCAAAACCA TTGCTAAAAG ATAATGGCAT GAATAAACCT TTTCTTTAAC 13950 .......... .......... .......... .......... .......... .......... 403 GGTAATGACA TAAATGAGCC AAACTTTTAA CTGATGATAT AAATAAGATT TTTCTGTAAG 13890 .......... .......... .......... .......... .......... .......... 403 TTCGATTACA TATTTGAGAC TTTTCCCTAA TTTTAAAATG AAATGTAGAA TCATTTTTTC 13830 .......... .......... .......... .......... .......... .......... 403 TATGTATAAT TTGAAATATT AGTCGATTTC AAAATTATTT ACTTCATTAT TTCTATTAAT 13770 .......... .......... .......... .......... .......... .......... 403 AATAAAATAA ATCATCTTAT ATATGAATTT AAATGGAAAA TTTTATTATG AATAAGGCAC 13710 .......... .......... .......... .......... .......... .......... 403 AACTTACACT AGTTGTATGA GGGAGTATTT TATTATTATT ATATTTAAAT TTGTGGAACC 13650 .......... .......... .......... .......... .......... .......... 403 TACACTTTAT TTTTCTTCTT TGCCTCCTAT TTCTGTTTCT TGTTTTTCTC TTTCCTCTTT 13590 .......... .......... .......... .......... .......... .......... 403 TTTCTCATTT TAATTTTTTT TCTTCTTTAA ATTTATTTTG AAACCGATTT AATTACTTTT 13530 .......... .......... .......... .......... .......... .......... 403 TTTTATCCAT TTTTAAAAAA AAATTATTTT ATCATTAAAA ATAAAAAGGG ATGAGCATAC 13470 .......... .......... .......... .......... .......... .......... 403 TTTATCAAGT TAATTTCTTA AACGGTCACT TATATCATAT ATATTGATCA CTAAAATTAT 13410 .......... .......... .......... .......... .......... .......... 403 TTCTATTTCT TTTTTCTCAT TTTTCATAAT ATAGTACTTT AAAATATTTC ACCTTCATAT 13350 |||||| |||||| | | || | | .......... .......... .......... ....TACTTT AAAATAAAAC AAACTC-T-T 427 TTCGTATCAT TTTAAATTCT ACTTTTTAAA ATTTATCTAA AACTTATTTT TTACTTTATT 13290 ||| TTC....... .......... .......... .......... .......... .......... 430 TGATATTGAT GTTTGATCAT AATAATTTGA AATATAATTT TTCAACTTGT AGGTATACTT 13230 .......... .......... .......... .......... .......... .......... 430 TAAATTTTAA AAACAAATTA GTATAATCTA TTTTTAAACT CATTTTTCGC TTTTGATATT 13170 .......... .......... .......... .......... .......... .......... 430 ATATTTACGT ACATTCAATT ATGAATATTT ATTAAAATAT TCTTTTATTA AAATAAAATA 13110 .......... .......... .......... .......... .......... .......... 430 CAATTTTATT TTCAAATTTT GCTCCATATA TTTCAAATAT AGTTAAAAAA ACATATTAAA 13050 .......... .......... .......... .......... .......... .......... 430 TACTATGGCC AAATGACAAA TATTTGTTAA TGTTTAGTTT AATAACAAAT GTTTCACTGT 12990 .......... .......... .......... .......... .......... .......... 430 TCTCTTTTTA ATGTTTAGTT TGATATTAAT ATTTGGACGT ACTTAAATAT AATATCAAAA 12930 .......... .......... .......... .......... .......... .......... 430 GTAAAAAATG TCGCAGGCAC GACGGCCCGT CACAGGCTAC GTAATTCACA CTGGGTCGGA 12870 | | | .......... ......GAAA AATC...... .......... .......... .......... 438 TTTCTGTTAA GTAATTTAAG GGGCGTTTTG GACTATTCCG GCTTTAATTA TAAAGTTAGT 12810 .......... .......... .......... .......... .......... .......... 438 GGGTTTATAT TAATAAGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 12750 .......... .......... .......... .......... .......... .......... 438 GTGGGTTATT ATTGCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAAGAG 12690 .......... .......... .......... .......... .......... .......... 438 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATTGA TAGAGAGAGA 12630 .......... .......... .......... .......... .......... .......... 438 CGAATGAAGA GGAAAAACAA AAGCTTGGGA AATTTGCTTG CTTGATCACG AATCTTCGGT 12570 .......... .......... .......... .......... .......... .......... 438 GGAGGTAGGT TATGGTTTCT TTTACGATAT TCGTAATAAA CTCTTAATAG CGAATGATAT 12510 .......... .......... .......... .......... .......... .......... 438 GTATTGATAA TATTGTAAAC CCTGCTATGT GCTTAATTGT ATGCTTGCAT GAATGAAATT 12450 .......... .......... .......... .......... .......... .......... 438 ATATAATTGT GATTATATAA GCATGATGAA GTTATTGAAT CCCAATATCT TGCAAAACCC 12390 .......... .......... .......... .......... .......... .......... 438 TAATCTCTTT GTTAATGATG AGGCCTTGGT ATAAAAGAAG GCGTGATGAA CTAAAATAAT 12330 |||| .......... .......... ..ACCTTT.. .......... .......... .......... 444 GAGATTGATG ATGTCTTGGT AAGAAAGAAG GCTTGATGAA TTGATAGAAG GAGATTAGGG 12270 .......... .......... .......... .......... .......... .......... 444 GATCGGGTGT CAAGAACAGA CACGTAGATT TAGGGGATCG GGTGTCACGA ACCGACACGT 12210 .......... .......... .......... .......... .......... .......... 444 AGATTTAGGG GATCGGGTGT CACGAACCGA CACGTAGATT TAGGGGATCG GGTGTCACGA 12150 .......... .......... .......... .......... .......... .......... 444 ACCGACACGT AGATTTAGGG GATCGGGTGT CACGAATCGA CACGTAGATT TAGGGGATCG 12090 .......... .......... .......... .......... .......... .......... 444 GGTGTCACGA ACCGACACGT AGATTTAGGG GACCGGAGTG TCACGTTCCG ACACATAGTA 12030 .......... .......... .......... .......... .......... .......... 444 GTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA ATGAATATGA GGGAGCGGAG 11970 .......... .......... .......... .......... .......... .......... 444 TGTCACGTAC TGACACAAGA GAAATAAAGA TAATGAATCT TGAAAGATGT TAATATACTT 11910 .......... .......... .......... .......... .......... .......... 444 AATCTAAATG AACATAATTT CCAAATGAGT ATGATATTGA GGCTTGAGTC CTCATGTGTG 11850 .......... .......... .......... .......... .......... .......... 444 AACTTGACGG TAATTGTTAA TGATATAGTA CTTGCTGTTG CTACATGTTG AGTATCATAG 11790 .......... .......... .......... .......... .......... .......... 444 TTGATTTTAT GATATTACTT GGTATATATT GATTTCTATT TTGAGTTGGC CGATGATATC 11730 .......... .......... .......... .......... .......... .......... 444 TACTCAGTAC CCGTGTTTTG TACTGACTCC TACTTTTATG TTTTCTTCTT GTTTAATTGT 11670 .......... .......... .......... .......... .......... .......... 444 AGAGTGCAGC AAACGTGCCG TCATCTTCGA CTCAACAGTA ACTCTAGCCA GTCTTCAGTA 11610 | | |||| ..TTTCGATA AAAC...... .......... .......... .......... .......... 456 CTCCGGATAT CAGGGTGAGC TAATGCTTCT AGTTTGGACT GGATCTTCCT TTTCATGTCT 11550 || |||||| || ||||||| |||||||| | || |||||| .......... .......... .AAAGCTTCT AGCTTGGACT GGATCTTCTT CTTTATGTCT 495 TGATGCCTTG AAGTTCCGGC ATGGACTAAC T-T-TTATGT ATTTTTAGGT TCTTAGAAAC 11492 |||||||||| ||||| |||| |||||||||| | | |||||| | ||||||| ||||||| || TGATGCCTTG AAGTTTCGGC ATGGACTAAC TGTGTTATGT A-TTTTAGGC TCTTAGATAC 554 TCTTAGATTT AGTAATTTGA AGTAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGAA 11432 | ||||||| ||||||| || |||||||||| |||||||||| | |||||||| |||||||||| TTCTAGATTT AGTAATTCGA AGTAGATGTT CTTGTGATGA TAACTTCCAG ATTTTGGGAA 614 ATAATAGTTA TTGAATTGGT TTTTATTAAT GAGTTTAAGT CTTCCGCATT ACTTTATGTT 11372 |||||||||| |||||||||| |||||| || | ATAATAGTTA TTGAATTGGT TTTTATAAAA AA........ .......... .......... 646 GATATTACAT TAAAATGTTA AGGTTTAGAT TGGTTGGTTC GCTCACATAG GAGGGTAAGT 11312 .......... .......... .......... .......... .......... .......... 646 GTGGGTGCCA GTCGCGGCTC GGTATTTGGG TCGTGACACG ACATAACTCT ATGGGATCGT 11252 .......... .......... .......... .......... .......... .......... 646 TTGGCTGGTA ATAAGTTATT TCAAAATTAA TTATCCTGAA ACAATTTATT CCCTCACTGT 11192 .......... .......... .......... .......... .......... .......... 646 CCGATAAATA ATCTCAAACT TTTTAATCTC ATAACTATTT ATTCTTATCC GTCACACCCA 11132 .......... .......... .......... .......... .......... .......... 646 ATGAGCCCGT GACAAACAAC CCTAACACAC CACACTTATT TTTGGCAAAG AAGGAACAAC 11072 .......... .......... .......... .......... .......... .......... 646 AACAAGTTAA CATTATAAAA ATAAACTGAA AAAGCTCTAT CCATGAAAAA ACAGGGGAAA 11012 ||| .......... .......... .......... .......... .......... ....AAAAAA 652 GAGTAAAAAA AAAA 10998 | |||||| |||| AAAAAAAAAA AAAA 666 hqPGS_C09HBa0278J12.1-_SGN-E368629+ (13375 13347,12913 12906,12367 12362,11667 11656,11588 11400) ******************************************************************************** EST sequence 284 +strand 402 n (File: SGN-E352844+) 1 GGAGTGTCTT AGGTGCCTTA AACACCTTCC TAAGACGCTA ATAAGAATCC CGAATCCTAA 61 AAAATATTTT CAAAACGACT TTTCTGTTTA AATTGTTTTG AGAATGAGTT TTCTTGATTT 121 TTCTTAAAAA TTAAGTGGCG ACTCCTAAAG TCGAAAAATA CTTTAAAATA AAACAAACTC 181 TTTTCGAAAA ATCACCTTTT TTCGATAAAA CAAAGCTTCT AGCTTGGACT GGATCTTCTT 241 CTTCATGTCT TGATGCCTTG AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC 301 TTAGATACTC TTAGATTTAG TAATTCGAAG TAGATGTTCT TGTGATGATA ACTTCCAGAT 361 TTTGGGAAAT AATAGTTATT GAATTGGTTT TTATAAAAAA AA Predicted gene structure (within gDNA segment 14568 to 10716): Exon 1 13375 13347 ( 29 n); cDNA 159 185 ( 27 n); score: 0.724 Intron 1 13346 12914 ( 433 n); Pd: 0.900 (s: 0), Pa: 0.988 (s: 0) Exon 2 12913 12906 ( 8 n); cDNA 186 193 ( 8 n); score: 0.375 Intron 2 12905 12368 ( 538 n); Pd: 0.320 (s: 0), Pa: 0.415 (s: 0) Exon 3 12367 12362 ( 6 n); cDNA 194 199 ( 6 n); score: 0.667 Intron 3 12361 11668 ( 694 n); Pd: 0.084 (s: 0), Pa: 0.998 (s: 0) Exon 4 11667 11656 ( 12 n); cDNA 200 211 ( 12 n); score: 0.500 Intron 4 11655 11589 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 5 11588 11403 ( 186 n); cDNA 212 397 ( 186 n); score: 0.927 MATCH C09HBa0278J12.1- SGN-E352844+ 0.927 241 0.600 C PGS_C09HBa0278J12.1-_SGN-E352844+ (13375 13347,12913 12906,12367 12362,11667 11656,11588 11403) Alignment (genomic DNA sequence = upper lines): TACTTTAAAA TATTTCACCT TCATATTTCG TATCATTTTA AATTCTACTT TTTAAAATTT 13316 |||||||||| || || || | |||| TACTTTAAAA TAAAACAAAC TC-T-TTTC. .......... .......... .......... 185 ATCTAAAACT TATTTTTTAC TTTATTTGAT ATTGATGTTT GATCATAATA ATTTGAAATA 13256 .......... .......... .......... .......... .......... .......... 185 TAATTTTTCA ACTTGTAGGT ATACTTTAAA TTTTAAAAAC AAATTAGTAT AATCTATTTT 13196 .......... .......... .......... .......... .......... .......... 185 TAAACTCATT TTTCGCTTTT GATATTATAT TTACGTACAT TCAATTATGA ATATTTATTA 13136 .......... .......... .......... .......... .......... .......... 185 AAATATTCTT TTATTAAAAT AAAATACAAT TTTATTTTCA AATTTTGCTC CATATATTTC 13076 .......... .......... .......... .......... .......... .......... 185 AAATATAGTT AAAAAAACAT ATTAAATACT ATGGCCAAAT GACAAATATT TGTTAATGTT 13016 .......... .......... .......... .......... .......... .......... 185 TAGTTTAATA ACAAATGTTT CACTGTTCTC TTTTTAATGT TTAGTTTGAT ATTAATATTT 12956 .......... .......... .......... .......... .......... .......... 185 GGACGTACTT AAATATAATA TCAAAAGTAA AAAATGTCGC AGGCACGACG GCCCGTCACA 12896 | | | .......... .......... .......... .......... ..GAAAAATC .......... 193 GGCTACGTAA TTCACACTGG GTCGGATTTC TGTTAAGTAA TTTAAGGGGC GTTTTGGACT 12836 .......... .......... .......... .......... .......... .......... 193 ATTCCGGCTT TAATTATAAA GTTAGTGGGT TTATATTAAT AAGTCTAATT ACTTGGGGGT 12776 .......... .......... .......... .......... .......... .......... 193 TAAAAGAGGT AACCTTGAGT AAATTAGTGG GTTATTATTG CCATCTTTTA TTCTTAATTA 12716 .......... .......... .......... .......... .......... .......... 193 TATGCTAATT AGGGTAAAAG AAAGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG 12656 .......... .......... .......... .......... .......... .......... 193 AGAGAAGGAG AATTGATAGA GAGAGACGAA TGAAGAGGAA AAACAAAAGC TTGGGAAATT 12596 .......... .......... .......... .......... .......... .......... 193 TGCTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG GTTTCTTTTA CGATATTCGT 12536 .......... .......... .......... .......... .......... .......... 193 AATAAACTCT TAATAGCGAA TGATATGTAT TGATAATATT GTAAACCCTG CTATGTGCTT 12476 .......... .......... .......... .......... .......... .......... 193 AATTGTATGC TTGCATGAAT GAAATTATAT AATTGTGATT ATATAAGCAT GATGAAGTTA 12416 .......... .......... .......... .......... .......... .......... 193 TTGAATCCCA ATATCTTGCA AAACCCTAAT CTCTTTGTTA ATGATGAGGC CTTGGTATAA 12356 | ||| .......... .......... .......... .......... ........AC CTTT...... 199 AAGAAGGCGT GATGAACTAA AATAATGAGA TTGATGATGT CTTGGTAAGA AAGAAGGCTT 12296 .......... .......... .......... .......... .......... .......... 199 GATGAATTGA TAGAAGGAGA TTAGGGGATC GGGTGTCAAG AACAGACACG TAGATTTAGG 12236 .......... .......... .......... .......... .......... .......... 199 GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGATC GGGTGTCACG AACCGACACG 12176 .......... .......... .......... .......... .......... .......... 199 TAGATTTAGG GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGATC GGGTGTCACG 12116 .......... .......... .......... .......... .......... .......... 199 AATCGACACG TAGATTTAGG GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGACC 12056 .......... .......... .......... .......... .......... .......... 199 GGAGTGTCAC GTTCCGACAC ATAGTAGTAG GGGATCGGAG TGTCACGTAC CGACACAAGA 11996 .......... .......... .......... .......... .......... .......... 199 GGATTAATGA ATATGAGGGA GCGGAGTGTC ACGTACTGAC ACAAGAGAAA TAAAGATAAT 11936 .......... .......... .......... .......... .......... .......... 199 GAATCTTGAA AGATGTTAAT ATACTTAATC TAAATGAACA TAATTTCCAA ATGAGTATGA 11876 .......... .......... .......... .......... .......... .......... 199 TATTGAGGCT TGAGTCCTCA TGTGTGAACT TGACGGTAAT TGTTAATGAT ATAGTACTTG 11816 .......... .......... .......... .......... .......... .......... 199 CTGTTGCTAC ATGTTGAGTA TCATAGTTGA TTTTATGATA TTACTTGGTA TATATTGATT 11756 .......... .......... .......... .......... .......... .......... 199 TCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACCCGT GTTTTGTACT GACTCCTACT 11696 .......... .......... .......... .......... .......... .......... 199 TTTATGTTTT CTTCTTGTTT AATTGTAGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA 11636 | | |||| .......... .......... ........TT TCGATAAAAC .......... .......... 211 ACAGTAACTC TAGCCAGTCT TCAGTACTCC GGATATCAGG GTGAGCTAAT GCTTCTAGTT 11576 || |||||||| | .......... .......... .......... .......... .......AAA GCTTCTAGCT 224 TGGACTGGAT CTTCCTTTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAACT-TT 11517 |||||||||| |||| | ||| |||||||||| |||||||||| |||||||||| |||| || || TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 284 TATGTATTTT TAGGTTCTTA GAAACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 11457 |||||| ||| ||| |||||| || ||||||| |||||||||| || ||||||| |||||||||| TATGTA-TTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTCGAAGTAG ATGTTCTTGT 343 GATGATGACT TCCAGATTTT GGGAAATAAT AGTTATTGAA TTGGTTTTTA TTAA 11403 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| | || GATGATAACT TCCAGATTTT GGGAAATAAT AGTTATTGAA TTGGTTTTTA TAAA 397 hqPGS_C09HBa0278J12.1-_SGN-E352844+ (13375 13347,12913 12906,12367 12362,11667 11656,11588 11403) ******************************************************************************** EST sequence 15 -strand 434 n (File: SGN-E222578-) 1 AAAAAAAAAA AAAAAAACTC GAGACTAGCA AGCCTCATCA CTGAAACTCC ATCTTGAAGC 61 TGGTAACACT CGAAGCTCTG CAAGCAAGTT TCCATCTCGA AGCCTTGAAG AAAGTCCCCA 121 TCTAGAAAGT TGTGGAGTGC AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCAAG 181 CCAGTCTTCG TCACACCGGA TCTTCAGGGT GAGCTAACGC GTCTAGCTTG GACTGGATCT 241 TCTCCTTCAT GTCTTGATGC CTTGAACCTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA 301 GCTTTTAGAA ACTCTTAGAA TTAGTAGTTT AAAGTAGATG TTCTTGTGAT GATGACTTCC 361 AGGTTTTGGG AATAATAGAT GTTGAATATT GATAGTTATT GAATTGGTTT TTATTAAAAA 421 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 13618 to 10122): Exon 1 12367 12362 ( 6 n); cDNA 102 107 ( 6 n); score: 1.000 Intron 1 12361 11948 ( 414 n); Pd: 0.084 (s: 0), Pa: 0.000 (s: 0) Exon 2 11947 11918 ( 30 n); cDNA 108 135 ( 28 n); score: 0.633 Intron 2 11917 11668 ( 250 n); Pd: 0.900 (s: 0), Pa: 0.998 (s: 0.98) Exon 3 11667 11418 ( 250 n); cDNA 136 385 ( 250 n); score: 0.884 PPA cDNA 416 434 MATCH C09HBa0278J12.1- SGN-E222578- 0.884 286 0.659 C PGS_C09HBa0278J12.1-_SGN-E222578- (12367 12362,11947 11918,11667 11418) Alignment (genomic DNA sequence = upper lines): GCCTTGGTAT AAAAGAAGGC GTGATGAACT AAAATAATGA GATTGATGAT GTCTTGGTAA 12308 |||||| GCCTTG.... .......... .......... .......... .......... .......... 107 GAAAGAAGGC TTGATGAATT GATAGAAGGA GATTAGGGGA TCGGGTGTCA AGAACAGACA 12248 .......... .......... .......... .......... .......... .......... 107 CGTAGATTTA GGGGATCGGG TGTCACGAAC CGACACGTAG ATTTAGGGGA TCGGGTGTCA 12188 .......... .......... .......... .......... .......... .......... 107 CGAACCGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC CGACACGTAG ATTTAGGGGA 12128 .......... .......... .......... .......... .......... .......... 107 TCGGGTGTCA CGAATCGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC CGACACGTAG 12068 .......... .......... .......... .......... .......... .......... 107 ATTTAGGGGA CCGGAGTGTC ACGTTCCGAC ACATAGTAGT AGGGGATCGG AGTGTCACGT 12008 .......... .......... .......... .......... .......... .......... 107 ACCGACACAA GAGGATTAAT GAATATGAGG GAGCGGAGTG TCACGTACTG ACACAAGAGA 11948 .......... .......... .......... .......... .......... .......... 107 AATAAAGATA ATGAATCTTG AAAGATGTTA ATATACTTAA TCTAAATGAA CATAATTTCC 11888 || |||| | |||| | |||| ||| AAGAAAG-T- CCCCATCTAG AAAGTTGTGG .......... .......... .......... 135 AAATGAGTAT GATATTGAGG CTTGAGTCCT CATGTGTGAA CTTGACGGTA ATTGTTAATG 11828 .......... .......... .......... .......... .......... .......... 135 ATATAGTACT TGCTGTTGCT ACATGTTGAG TATCATAGTT GATTTTATGA TATTACTTGG 11768 .......... .......... .......... .......... .......... .......... 135 TATATATTGA TTTCTATTTT GAGTTGGCCG ATGATATCTA CTCAGTACCC GTGTTTTGTA 11708 .......... .......... .......... .......... .......... .......... 135 CTGACTCCTA CTTTTATGTT TTCTTCTTGT TTAATTGTAG AGTGCAGCAA ACGTGCCGTC 11648 |||||||||| |||||||||| .......... .......... .......... .......... AGTGCAGCAA ACGTGCCGTC 155 ATCTTCGACT CAACAGTAAC TCTAGCCAGT CTTCAGTACT CCGGAT-ATC AGGGTGAGCT 11589 |||||||||| |||||||||| || ||||||| |||| || |||||| || |||||||||| ATCTTCGACT CAACAGTAAC TCAAGCCAGT CTTCGTCACA CCGGATCTTC AGGGTGAGCT 215 AATGCTTCTA GTTTGGACTG GATCTTCCTT TTCATGTCTT GATGCCTTGA AGTTCCGGCA 11529 || || |||| | |||||||| ||||||| |||||||||| |||||||||| | ||||||| AACGCGTCTA GCTTGGACTG GATCTTCTCC TTCATGTCTT GATGCCTTGA ACCTCCGGCA 275 TGGACTAACT T-TTATGTAT TTTTAGGTTC TTAGAAACTC TTAGATTTAG TAATTTGAAG 11470 ||||||| || | |||||||| |||||| || |||||||||| ||||| |||| || ||| ||| TGGACTAGCT TCTTATGTAT TTTTAGCTT- TTAGAAACTC TTAGAATTAG TAGTTTAAAG 334 TAGATGTTCT TGTGATGATG ACTTCCAGAT TTTGGGAAAT AATAGTTATT GA 11418 |||||||||| |||||||||| |||||||| | |||||| ||| ||||| | || || TAGATGTTCT TGTGATGATG ACTTCCAGGT TTTGGG-AAT AATAGATGTT GA 385 hqPGS_C09HBa0278J12.1-_SGN-E222578- (11947 11918,11667 11418) ******************************************************************************** EST sequence 346 +strand 620 n (File: SGN-E238551+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG Predicted gene structure (within gDNA segment 17018 to 10815): Exon 1 13375 13347 ( 29 n); cDNA 404 430 ( 27 n); score: 0.724 Intron 1 13346 12914 ( 433 n); Pd: 0.900 (s: 0), Pa: 0.988 (s: 0) Exon 2 12913 12906 ( 8 n); cDNA 431 438 ( 8 n); score: 0.375 Intron 2 12905 12368 ( 538 n); Pd: 0.320 (s: 0), Pa: 0.415 (s: 0) Exon 3 12367 12362 ( 6 n); cDNA 439 444 ( 6 n); score: 0.667 Intron 3 12361 11668 ( 694 n); Pd: 0.084 (s: 0), Pa: 0.998 (s: 0) Exon 4 11667 11656 ( 12 n); cDNA 445 456 ( 12 n); score: 0.500 Intron 4 11655 11589 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 5 11588 11425 ( 164 n); cDNA 457 620 ( 164 n); score: 0.924 MATCH C09HBa0278J12.1- SGN-E238551+ 0.924 219 0.353 C PGS_C09HBa0278J12.1-_SGN-E238551+ (13375 13347,12913 12906,12367 12362,11667 11656,11588 11425) Alignment (genomic DNA sequence = upper lines): TACTTTAAAA TATTTCACCT TCATATTTCG TATCATTTTA AATTCTACTT TTTAAAATTT 13316 |||||||||| || || || | |||| TACTTTAAAA TAAAACAAAC TC-T-TTTC. .......... .......... .......... 430 ATCTAAAACT TATTTTTTAC TTTATTTGAT ATTGATGTTT GATCATAATA ATTTGAAATA 13256 .......... .......... .......... .......... .......... .......... 430 TAATTTTTCA ACTTGTAGGT ATACTTTAAA TTTTAAAAAC AAATTAGTAT AATCTATTTT 13196 .......... .......... .......... .......... .......... .......... 430 TAAACTCATT TTTCGCTTTT GATATTATAT TTACGTACAT TCAATTATGA ATATTTATTA 13136 .......... .......... .......... .......... .......... .......... 430 AAATATTCTT TTATTAAAAT AAAATACAAT TTTATTTTCA AATTTTGCTC CATATATTTC 13076 .......... .......... .......... .......... .......... .......... 430 AAATATAGTT AAAAAAACAT ATTAAATACT ATGGCCAAAT GACAAATATT TGTTAATGTT 13016 .......... .......... .......... .......... .......... .......... 430 TAGTTTAATA ACAAATGTTT CACTGTTCTC TTTTTAATGT TTAGTTTGAT ATTAATATTT 12956 .......... .......... .......... .......... .......... .......... 430 GGACGTACTT AAATATAATA TCAAAAGTAA AAAATGTCGC AGGCACGACG GCCCGTCACA 12896 | | | .......... .......... .......... .......... ..GAAAAATC .......... 438 GGCTACGTAA TTCACACTGG GTCGGATTTC TGTTAAGTAA TTTAAGGGGC GTTTTGGACT 12836 .......... .......... .......... .......... .......... .......... 438 ATTCCGGCTT TAATTATAAA GTTAGTGGGT TTATATTAAT AAGTCTAATT ACTTGGGGGT 12776 .......... .......... .......... .......... .......... .......... 438 TAAAAGAGGT AACCTTGAGT AAATTAGTGG GTTATTATTG CCATCTTTTA TTCTTAATTA 12716 .......... .......... .......... .......... .......... .......... 438 TATGCTAATT AGGGTAAAAG AAAGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG 12656 .......... .......... .......... .......... .......... .......... 438 AGAGAAGGAG AATTGATAGA GAGAGACGAA TGAAGAGGAA AAACAAAAGC TTGGGAAATT 12596 .......... .......... .......... .......... .......... .......... 438 TGCTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG GTTTCTTTTA CGATATTCGT 12536 .......... .......... .......... .......... .......... .......... 438 AATAAACTCT TAATAGCGAA TGATATGTAT TGATAATATT GTAAACCCTG CTATGTGCTT 12476 .......... .......... .......... .......... .......... .......... 438 AATTGTATGC TTGCATGAAT GAAATTATAT AATTGTGATT ATATAAGCAT GATGAAGTTA 12416 .......... .......... .......... .......... .......... .......... 438 TTGAATCCCA ATATCTTGCA AAACCCTAAT CTCTTTGTTA ATGATGAGGC CTTGGTATAA 12356 | ||| .......... .......... .......... .......... ........AC CTTT...... 444 AAGAAGGCGT GATGAACTAA AATAATGAGA TTGATGATGT CTTGGTAAGA AAGAAGGCTT 12296 .......... .......... .......... .......... .......... .......... 444 GATGAATTGA TAGAAGGAGA TTAGGGGATC GGGTGTCAAG AACAGACACG TAGATTTAGG 12236 .......... .......... .......... .......... .......... .......... 444 GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGATC GGGTGTCACG AACCGACACG 12176 .......... .......... .......... .......... .......... .......... 444 TAGATTTAGG GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGATC GGGTGTCACG 12116 .......... .......... .......... .......... .......... .......... 444 AATCGACACG TAGATTTAGG GGATCGGGTG TCACGAACCG ACACGTAGAT TTAGGGGACC 12056 .......... .......... .......... .......... .......... .......... 444 GGAGTGTCAC GTTCCGACAC ATAGTAGTAG GGGATCGGAG TGTCACGTAC CGACACAAGA 11996 .......... .......... .......... .......... .......... .......... 444 GGATTAATGA ATATGAGGGA GCGGAGTGTC ACGTACTGAC ACAAGAGAAA TAAAGATAAT 11936 .......... .......... .......... .......... .......... .......... 444 GAATCTTGAA AGATGTTAAT ATACTTAATC TAAATGAACA TAATTTCCAA ATGAGTATGA 11876 .......... .......... .......... .......... .......... .......... 444 TATTGAGGCT TGAGTCCTCA TGTGTGAACT TGACGGTAAT TGTTAATGAT ATAGTACTTG 11816 .......... .......... .......... .......... .......... .......... 444 CTGTTGCTAC ATGTTGAGTA TCATAGTTGA TTTTATGATA TTACTTGGTA TATATTGATT 11756 .......... .......... .......... .......... .......... .......... 444 TCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACCCGT GTTTTGTACT GACTCCTACT 11696 .......... .......... .......... .......... .......... .......... 444 TTTATGTTTT CTTCTTGTTT AATTGTAGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA 11636 | | |||| .......... .......... ........TT TCGATAAAAC .......... .......... 456 ACAGTAACTC TAGCCAGTCT TCAGTACTCC GGATATCAGG GTGAGCTAAT GCTTCTAGTT 11576 || |||||||| | .......... .......... .......... .......... .......AAA GCTTCTAGCT 469 TGGACTGGAT CTTCCTTTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAACT-TT 11517 |||||||||| |||| | ||| |||||||||| |||||||||| |||||||||| |||| || || TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 529 TATGTATTTT TAGGTTCTTA GAAACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 11457 |||||| ||| ||| |||||| || ||||||| |||||||||| || ||||||| |||||||||| TATGTA-TTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTCGAAGTAG ATGTTCTTGT 588 GATGATGACT TCCAGATTTT GGGAAATAAT AG 11425 |||||| ||| |||||||||| |||||||||| || GATGATAACT TCCAGATTTT GGGAAATAAT AG 620 hqPGS_C09HBa0278J12.1-_SGN-E238551+ (13375 13347,12913 12906,12367 12362,11667 11656,11588 11425) ******************************************************************************** EST sequence 75 -strand 686 n (File: SGN-E241789-) 1 TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 61 GGGATCGGGT GTCACGAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 121 ATAGTATTAA TGGATCGGGT GTCACGAATC GGCACGTAGT ATTAGGAGAT CGGGTGTAAC 181 GAACCGACAC GTAGTATTAG GGGATCGGGT GTCACGAACC GACACGTAGC ATTAGGGGAT 241 CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT TATGTTAATG 301 TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGTCCTCATA 361 GATGTTCTTG GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA 421 TGGTTGATTT TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT 481 ATCTACTCAG TACTCGTGTT TGTACTGACC CCTACTTTTA TGTTTTCTTT TTGTTAATTG 541 TGGAGTGCAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAACC AGTCTTCATC 601 ACGTCAGATT TCAGGGTGAG CTATTGTTCC TAGCTCGGAC TGGATTCTCT CTCATTCATG 661 TCTTGATGTC CTTGAAGATC AGACAT Predicted gene structure (within gDNA segment 13004 to 9513): Exon 1 12381 12327 ( 55 n); cDNA 1 55 ( 55 n); score: 0.927 Intron 1 12326 12242 ( 85 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.90) Exon 2 12241 12036 ( 206 n); cDNA 56 261 ( 206 n); score: 0.888 Intron 2 12035 11955 ( 81 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.78) Exon 3 11954 11528 ( 427 n); cDNA 262 686 ( 425 n); score: 0.794 MATCH C09HBa0278J12.1- SGN-E241789- 0.833 688 1.003 C PGS_C09HBa0278J12.1-_SGN-E241789- (12381 12327,12241 12036,11954 11528) Alignment (genomic DNA sequence = upper lines): TTGTTAATGA TGAGGCCTTG GTATAAAAGA AGGCGTGATG AACTAAAATA ATGAGATTGA 12322 |||||||||| ||| | |||| |||||||||| |||| ||||| |||||||| | ||||| TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAG..... 55 TGATGTCTTG GTAAGAAAGA AGGCTTGATG AATTGATAGA AGGAGATTAG GGGATCGGGT 12262 .......... .......... .......... .......... .......... .......... 55 GTCAAGAACA GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 12202 ||||||||| |||||||||| |||||||||| |||| ||| .......... .......... GTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGTATTAA 95 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC 12142 ||||||||| |||||||||| ||||| ||| ||| |||| |||||||||| ||| || ||| TGGATCGGGT GTCACGAACC GACACATAGT ATTAATGGAT CGGGTGTCAC GAATCGGCAC 155 GTAGATTTAG GGGATCGGGT GTCACGAATC GACACGTAGA TTTAGGGGAT CGGGTGTCAC 12082 |||| |||| | |||||||| || ||||| | ||||||||| ||||||||| |||||||||| GTAGTATTAG GAGATCGGGT GTAACGAACC GACACGTAGT ATTAGGGGAT CGGGTGTCAC 215 GAACCGACAC GTAGATTTAG GGGACCGGAG TGTCACGTTC CGACACATAG TAGTAGGGGA 12022 |||||||||| |||| |||| |||| ||||| | |||||||| |||||| GAACCGACAC GTAGCATTAG GGGATCGGAG TATCACGTTC CGACAC.... .......... 261 TCGGAGTGTC ACGTACCGAC ACAAGAGGAT TAATGAATAT GAGGGAGCGG AGTGTCACGT 11962 .......... .......... .......... .......... .......... .......... 261 ACTGACACAA GAGAAATAAA GATAATGAAT CTTGAAAGAT GTTAATATAC TTAATCTAAA 11902 || || | |||| | ||||||| |||||| || |||||| ||| | ||| | || .......CAC GA-TAGTAAA AAGAATGAAT CTTGAATTAT GTTAATGTAC TCAAT-TTAA 312 TGAACATAAT TTCCAAATGA GTATGATATT GAGGCTTGAG TCCTCATGTG TGAACTTGAC 11842 ||||| | | | |||||||| ||||| | | |||||||||| ||||||| || |||| TGAACCTGTT TCCCAAATGA GTATGGTGTG GAGGCTTGAG TCCTCATAGA TGTTCTTG-- 370 GGTAATTGTT AAT-GATATA GTACTTGCTG TTGCTACATG TTGAGTATCA TAGTTGATTT 11783 ||| | ||| | ||| ||||||| || ||| || || || ||| | | | |||||||| GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA TGGTTGATTT 430 TATGATATTA CTTGGTATAT ATTGATTTCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG 11723 ||| ||||| ||| ||||| |||| | ||| ||| |||||| |||||||||| |||||||||| TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT ATCTACTCAG 490 TACCCGTGTT TTGTACTGAC TCCTACTTTT ATGTTTTCTT CTTGTTTAAT TGTAGAGTGC 11663 ||| |||| | |||||||||| ||||||||| |||||||||| ||| ||||| ||| |||||| TACTCGTG-T TTGTACTGAC CCCTACTTTT ATGTTTTCTT TTTG-TTAAT TGTGGAGTGC 548 AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA GTACTCCGGA 11603 ||||||||| ||||| |||| | ||||||| | ||||||| |||||||||| || | || AGCAAACGTA CCGTCGTCTT CAACTCAACC GCAACTCTAA CCAGTCTTCA TCACGTCAGA 608 TATCAGGGTG AGCTAATGCT TCTAGTTTGG ACTGGA-TCT -TCCTTTTCA TGTCTTGATG 11545 | |||||||| ||||| || | |||| | || |||||| ||| || |||| |||||||||| TTTCAGGGTG AGCTATTGTT CCTAGCTCGG ACTGGATTCT CTCTCATTCA TGTCTTGATG 668 -CCTTGAAGT TCCGGCAT 11528 |||||||| || | ||| TCCTTGAAGA TCAGACAT 686 hqPGS_C09HBa0278J12.1-_SGN-E241789- (12381 12327,12241 12036,11954 11528) ******************************************************************************** EST sequence 156 +strand 774 n (File: SGN-E349977+) 1 GATGTTGTAA ACCTGTCTAT ATGCTTATTG GTATGCTTGC ATGATTATGA TTATGAAATT 61 GTTATGAATT AACAAAGCAT GATGAAGCTA TTGAATCCCA AATCTTGAAA GAACCCTAAT 121 TCACTTGATA TATTATATAA TAAGATTGAT GAGGCCTTAG TATGAGAGAA GGCTTGATAA 181 ATTATATAAT GAGAATGATG ATGCCTTAGT GTAGAAGAAG GCTTGATGAA TTAGGGGATC 241 GGGTGCCACG TTTCGGTACC AGGATAGAAT GAATATGAGG ATCGGAGTGT CACGTTCCGA 301 CACCAGGATA GAATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GAATATGAGG 361 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATGAATATG AGGATCGGAG TGTTACGTTC 421 CGACACCAGG ATAGAATATG AGGATCGGGT GCCACGTTCC GGTACCAGGA TAGAATGAAT 481 ATGAGGATCG GAGTGCCACG TTCCGGCACC AGGATAGAAA TAGAGGAGCG GAGTGTCACG 541 TACCGACACA AGAGGAAGAA AGATAATGAA TCTTGAAAGA TAATGAATAT ACTCAATCTA 601 ATGAACTTAA TTCCCAAATG AGTATGGTAT TGAGGCTTGA GTCCTCATGT GTGAACTTGA 661 CGGTAATTGT TAATGATNAA GAAATTGCTA TTGCTACATG ATGAGTATTG TAGTTGATTT 721 ACATTATTAT TGATATATAT TGTTCCCTAT TTTGAGTTAG CGATGATATC TACT Predicted gene structure (within gDNA segment 17818 to 10246): Exon 1 16680 16653 ( 28 n); cDNA 119 144 ( 26 n); score: 0.750 Intron 1 16652 12377 (4276 n); Pd: 0.669 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 12376 12076 ( 301 n); cDNA 145 461 ( 317 n); score: 0.566 Intron 2 12075 12046 ( 30 n); Pd: 0.000 (s: 0.54), Pa: 0.000 (s: 0.62) ?? Exon 3 12045 11726 ( 320 n); cDNA 462 774 ( 313 n); score: 0.820 MATCH C09HBa0278J12.1- SGN-E349977+ 0.697 649 0.839 C PGS_C09HBa0278J12.1-_SGN-E349977+ (16680 16653,12376 12076,12045 11726) Alignment (genomic DNA sequence = upper lines): ATCCTCTTTG GTGTAGTTAT ATAATCAGGT TCGTCGAAAT AAAATATTGT GTATAAAATA 16621 || | | ||| | || |||| ||||| || ATTCAC-TTG ATATA-TTAT ATAATAAG.. .......... .......... .......... 144 AAATAATATA CTAAATGAAA AATAATATCA TATTTTAAAT ACCCTTAGTT CAATAAGCTA 16561 .......... .......... .......... .......... .......... .......... 144 TTGTAGCTTA GGGGTTTTAG ATGATTGAAA TAAGATACTG ATCACGTGTT TAAATTTTAA 16501 .......... .......... .......... .......... .......... .......... 144 TTGTCTTACT TTTTGAAAAG AACTTTTATT ATGCTATTTT TGAATATCAT TTGTAAAATT 16441 .......... .......... .......... .......... .......... .......... 144 TTTGATTCCG CAACTGATTA TTCTGATATA AGATATTTCA CTATATATAT GAGATAACTT 16381 .......... .......... .......... .......... .......... .......... 144 ATTTCATTAC TAAGATATTA ATAATGAGAT AAATATTTTC AAAATTGTCT AATACCACTA 16321 .......... .......... .......... .......... .......... .......... 144 GCCAAGCAAG CAACAAAATA ATCATACAAT TTATCATTCA AATTATTTGT ATATCTCATA 16261 .......... .......... .......... .......... .......... .......... 144 TCAAAGGACA TCTAAAGATT ATGTTCATTC ATGCATTAGG AATTGTGCTA TTTTCCCATC 16201 .......... .......... .......... .......... .......... .......... 144 TCTCATTATC GACCTATTCA TTTTCAATTT GAATAATACA TGAGAAAAGA ATCATTTCAT 16141 .......... .......... .......... .......... .......... .......... 144 AAGAAAAAAA GATTGTTCTA TTGTCCCATC TAAAAAAAAG AAAAGAAAAC CTTCTCATAA 16081 .......... .......... .......... .......... .......... .......... 144 TTCCACTTGT GTCTCATAAG TCATAAACAT TTATCCGTCC GGTATTATTT GTCATAGTTT 16021 .......... .......... .......... .......... .......... .......... 144 CTATTTTTGG AGTTAAACTA TAAAATTTTT GACTAACATT TTAAAATGTA TTTTTTCATC 15961 .......... .......... .......... .......... .......... .......... 144 ATATTAATAT GCAAAAAAAA TATAATTTAT AATACTTTTC ATATAATTTC GAATATTTAT 15901 .......... .......... .......... .......... .......... .......... 144 TTTTTTGTTT AAAATATCGA ATTAATATAA TCTAATTTAA CTATAAATAT TAGTCAAATT 15841 .......... .......... .......... .......... .......... .......... 144 GACTTTCGAT AAGCATAATA TGACAAATAA TTTTGAACAG AGAGAATACT ATTTTAGTAG 15781 .......... .......... .......... .......... .......... .......... 144 TTGCCTTTTA ATTCAATAAC TCATAATTAT ATGACTTCTC TAATTTCTAT AACTCCAAAA 15721 .......... .......... .......... .......... .......... .......... 144 TTGATTACAA AAACTTGCTC GTGAAATTAA TGTTCTATTT TAATTTTATG TTTGCTTGTT 15661 .......... .......... .......... .......... .......... .......... 144 TAATAACATT ATGGAATTAT TAAGGTATTG ACGTATTATT GATGATTTAT TGATTATTGA 15601 .......... .......... .......... .......... .......... .......... 144 TCATTATCGG TTCGATTATC AATTTAGCCG TTAAGATTTA AAAAATTAAT TAAATTAATG 15541 .......... .......... .......... .......... .......... .......... 144 AAAAATACTC AAAAACAAGG TGACAAATCC AATGAATCAT ATATATGAGT TCACAAGTTG 15481 .......... .......... .......... .......... .......... .......... 144 CATCTTGTTG AAAAAACAAA GAATTTTACA ATGTAGAATA ACCAAGATTT TGAGATAAAC 15421 .......... .......... .......... .......... .......... .......... 144 TAATAGAAAC AGGAAACTAA ACTCTCTTGA CATATATGCA AATGCATAAG TATAATATGT 15361 .......... .......... .......... .......... .......... .......... 144 AATTATCTAA CCGATATACA TATACAATTC GTCTCTCTCC CATTCTTTGC CCTCTCTCTT 15301 .......... .......... .......... .......... .......... .......... 144 TGCCTCTCTC CTCTCTCTTC CAGTATCGCT CTCCTCTCAC CTCCCTGTAA CTATAATTAT 15241 .......... .......... .......... .......... .......... .......... 144 GAATTGTAAT TATCAACCTA TTCAGACTAT TTTAGTTGCT ATCTGTGAAA GTTTCTCTAT 15181 .......... .......... .......... .......... .......... .......... 144 TTTAATCAAT ATTTTTAAAT ATATCTCGAA AAGAAAAGAA AAAAAATAAA AAATATCACA 15121 .......... .......... .......... .......... .......... .......... 144 TAAATTAAAA TACGAAACTT CTAATATTCA TACCTGGTAA TTAGCCTAAT TTAGCATCAC 15061 .......... .......... .......... .......... .......... .......... 144 TTTTGAATGT TAGATCATAA GGATGGAATT TTCCGATGTA CAAAACAGAG TTGCTGGAAT 15001 .......... .......... .......... .......... .......... .......... 144 ATTGTGATAA TAGATATCAA AATTTACTCT GACATCGTCG CAATTCTCGA AAATCATTCT 14941 .......... .......... .......... .......... .......... .......... 144 TTGTGAGTAA CCTTTAGCTA ACAACGCCGT GATGTTAGAG GTGGTGTCGT GAGATGTGCC 14881 .......... .......... .......... .......... .......... .......... 144 AGAGTGAACA TATAATCGAT TTGGCTGAGT CGACGCTGTC ATCGACGCAA ACCACCAGTC 14821 .......... .......... .......... .......... .......... .......... 144 GAACACTTTA TATTCAAAAT GATATAAATA TAATTATTTA ATTGACTATT GAATTATCAA 14761 .......... .......... .......... .......... .......... .......... 144 TTAATTCATT AAAAAAAAAT TTCAATTCAT TAAAATCAAT AACCCAATAA AAAAAATAAA 14701 .......... .......... .......... .......... .......... .......... 144 ACCATTATCC GAACCACTAA ACAATAACCC ATTATTGATA GTTTCGATTT TGATTCAATT 14641 .......... .......... .......... .......... .......... .......... 144 TAAGTTAGGG TGGTGGACAT GTTAGTTGAT CTGACAATGT ATATTTAATT TTTAATTATT 14581 .......... .......... .......... .......... .......... .......... 144 CAAAACATGT AATCTGAATT GTTAAAATTA ATAAAAGAAT TTAATACTAA ATCAAAAAAA 14521 .......... .......... .......... .......... .......... .......... 144 AAAAAATGAA GAGTCAGTAA TTCTAACACC TTGAAGAATT ATGTATATCA CAAAAGTCAA 14461 .......... .......... .......... .......... .......... .......... 144 AATTATAAGT TACATATTTA AAAATAATAT AAAATTTAAA TGATTATTTT GAAAATATTG 14401 .......... .......... .......... .......... .......... .......... 144 AGCCTCTTCA TTTGCTATGT TCTTGGTTCA ATAGCAATTC AATTCCTCCT TATGTCTATT 14341 .......... .......... .......... .......... .......... .......... 144 AAGTATTAAT AGCATCCTAA CAATTTATCA ATTTCTAGCT TATGAAATAA CACATGTCAT 14281 .......... .......... .......... .......... .......... .......... 144 TATTTTTTAA CGGTGATTAT GTAAATTCAT TGTTGAAACG TGATCGAATT ATAATTGGCC 14221 .......... .......... .......... .......... .......... .......... 144 ATCGTTATCA ATTTTTTATT AAAAGTTCAA ACAAAATAAT TCAATCTTTA TTCAGAATTT 14161 .......... .......... .......... .......... .......... .......... 144 TGATTTTTAT ATTAAAATAA TTAATGATAG CGGTCAATTA TAATTCGGTC ACATCATCAA 14101 .......... .......... .......... .......... .......... .......... 144 TTTATTTAAT TATGATTTTT TTCTCCAGAA TTATGATTTT TTTATTTAAA AAAATTGATG 14041 .......... .......... .......... .......... .......... .......... 144 ACATGGCCGA ATTATAATTG GCCACGTGTC AAAAATGATT TTGCAAAACC ATTGCTAAAA 13981 .......... .......... .......... .......... .......... .......... 144 GATAATGGCA TGAATAAACC TTTTCTTTAA CGGTAATGAC ATAAATGAGC CAAACTTTTA 13921 .......... .......... .......... .......... .......... .......... 144 ACTGATGATA TAAATAAGAT TTTTCTGTAA GTTCGATTAC ATATTTGAGA CTTTTCCCTA 13861 .......... .......... .......... .......... .......... .......... 144 ATTTTAAAAT GAAATGTAGA ATCATTTTTT CTATGTATAA TTTGAAATAT TAGTCGATTT 13801 .......... .......... .......... .......... .......... .......... 144 CAAAATTATT TACTTCATTA TTTCTATTAA TAATAAAATA AATCATCTTA TATATGAATT 13741 .......... .......... .......... .......... .......... .......... 144 TAAATGGAAA ATTTTATTAT GAATAAGGCA CAACTTACAC TAGTTGTATG AGGGAGTATT 13681 .......... .......... .......... .......... .......... .......... 144 TTATTATTAT TATATTTAAA TTTGTGGAAC CTACACTTTA TTTTTCTTCT TTGCCTCCTA 13621 .......... .......... .......... .......... .......... .......... 144 TTTCTGTTTC TTGTTTTTCT CTTTCCTCTT TTTTCTCATT TTAATTTTTT TTCTTCTTTA 13561 .......... .......... .......... .......... .......... .......... 144 AATTTATTTT GAAACCGATT TAATTACTTT TTTTTATCCA TTTTTAAAAA AAAATTATTT 13501 .......... .......... .......... .......... .......... .......... 144 TATCATTAAA AATAAAAAGG GATGAGCATA CTTTATCAAG TTAATTTCTT AAACGGTCAC 13441 .......... .......... .......... .......... .......... .......... 144 TTATATCATA TATATTGATC ACTAAAATTA TTTCTATTTC TTTTTTCTCA TTTTTCATAA 13381 .......... .......... .......... .......... .......... .......... 144 TATAGTACTT TAAAATATTT CACCTTCATA TTTCGTATCA TTTTAAATTC TACTTTTTAA 13321 .......... .......... .......... .......... .......... .......... 144 AATTTATCTA AAACTTATTT TTTACTTTAT TTGATATTGA TGTTTGATCA TAATAATTTG 13261 .......... .......... .......... .......... .......... .......... 144 AAATATAATT TTTCAACTTG TAGGTATACT TTAAATTTTA AAAACAAATT AGTATAATCT 13201 .......... .......... .......... .......... .......... .......... 144 ATTTTTAAAC TCATTTTTCG CTTTTGATAT TATATTTACG TACATTCAAT TATGAATATT 13141 .......... .......... .......... .......... .......... .......... 144 TATTAAAATA TTCTTTTATT AAAATAAAAT ACAATTTTAT TTTCAAATTT TGCTCCATAT 13081 .......... .......... .......... .......... .......... .......... 144 ATTTCAAATA TAGTTAAAAA AACATATTAA ATACTATGGC CAAATGACAA ATATTTGTTA 13021 .......... .......... .......... .......... .......... .......... 144 ATGTTTAGTT TAATAACAAA TGTTTCACTG TTCTCTTTTT AATGTTTAGT TTGATATTAA 12961 .......... .......... .......... .......... .......... .......... 144 TATTTGGACG TACTTAAATA TAATATCAAA AGTAAAAAAT GTCGCAGGCA CGACGGCCCG 12901 .......... .......... .......... .......... .......... .......... 144 TCACAGGCTA CGTAATTCAC ACTGGGTCGG ATTTCTGTTA AGTAATTTAA GGGGCGTTTT 12841 .......... .......... .......... .......... .......... .......... 144 GGACTATTCC GGCTTTAATT ATAAAGTTAG TGGGTTTATA TTAATAAGTC TAATTACTTG 12781 .......... .......... .......... .......... .......... .......... 144 GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTGCCATC TTTTATTCTT 12721 .......... .......... .......... .......... .......... .......... 144 AATTATATGC TAATTAGGGT AAAAGAAAGA GGGTTTGAAT AAGAAAAAGA AAAGAACAGA 12661 .......... .......... .......... .......... .......... .......... 144 AAGAGAGAGA AGGAGAATTG ATAGAGAGAG ACGAATGAAG AGGAAAAACA AAAGCTTGGG 12601 .......... .......... .......... .......... .......... .......... 144 AAATTTGCTT GCTTGATCAC GAATCTTCGG TGGAGGTAGG TTATGGTTTC TTTTACGATA 12541 .......... .......... .......... .......... .......... .......... 144 TTCGTAATAA ACTCTTAATA GCGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG 12481 .......... .......... .......... .......... .......... .......... 144 TGCTTAATTG TATGCTTGCA TGAATGAAAT TATATAATTG TGATTATATA AGCATGATGA 12421 .......... .......... .......... .......... .......... .......... 144 AGTTATTGAA TCCCAATATC TTGCAAAACC CTAATCTCTT TGTTAATGAT GAGGCCTTGG 12361 | |||| |||||||| | .......... .......... .......... .......... ....ATTGAT GAGGCCTTAG 160 TATAAAAGAA GGCGTGATGA ACTAAAATAA TGAGATTGAT GATGTCTTGG TAAGAAAGAA 12301 ||| | |||| ||| |||| | | | | |||| ||||| |||| |||| ||| | | ||||| TATGAGAGAA GGCTTGAT-A AATTATATAA TGAGAATGAT GATGCCTTAG TGTAGAAGAA 219 GGCTTGATGA ATTGATAGAA GGAGATTAGG GGATCGGGTG TCAAGAACAG ACACGTAGAT 12241 |||||||||| ||| | | | | | | | ||| | || | || | | | | || GGCTTGATGA ATT-AGGGGA TCGGGTGCCA CGTTTCGGT- ACCAGGATAG A-ATG-A-AT 274 TTAGGGGATC GG-GTGTCAC GAACCGACA- C--G-TAGAT TTAGGGGATC GG-GTGTCAC 12187 | | ||||| || ||||||| | |||||| | | |||| | | ||||| || ||||||| AT-GAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA TATGAGGATC GGAGTGTCAC 333 GAACCGACA- C--G-TAGAT TTAGGGGATC GGGTGTCACG AACC-G-A-C ACG-TAG-AT 12136 | |||||| | | |||| | | ||||| ||||| |||| || | | | | | ||| || GTTCCGACAC CAGGATAGAA TATGAGGATC GGGTGCCACG TTCCGGTACC AGGATAGAAT 393 T--TA-GGGG ATCGG-GTGT CACGAATCGA CAC---G-TA GATTTAGGGG ATCGGGTGTC 12084 || | || ||||| |||| ||| ||| ||| | || || | | || |||||||| | GAATATGAGG ATCGGAGTGT TACGTTCCGA CACCAGGATA GAATATGAGG ATCGGGTGCC 453 ACGAACCGAC ACGTAGATTT AGGGGACCGG AGTGTCACGT TCCGACACAT AGT-AGTA-G 12026 ||| ||| || || | | | | | || | ACGTTCCG.. .......... .......... ........GT ACCAGGATAG AATGAATATG 483 GGGATCGGAG TGTCACGTAC CGACACAAGA GGATTAATGA ATATGAGGGA GCGGAGTGTC 11966 ||||||||| || ||||| | || ||| || || | | | ||| || ||| |||||||||| AGGATCGGAG TGCCACGTTC CGGCACCAG- -GA-T-AGAA ATA-GA-GGA GCGGAGTGTC 537 ACGTACTGAC ACAAGAGAAA TAAAGATAAT GAATCTTGAA AGAT-GTTAA TATACTTAAT 11907 |||||| ||| ||||||| || ||||||||| |||||||||| |||| | || |||||| ||| ACGTACCGAC ACAAGAGGAA GAAAGATAAT GAATCTTGAA AGATAATGAA TATACTCAAT 597 CTAAATGAAC ATAATTTCCA AATGAGTATG ATATTGAGGC TTGAGTCCTC ATGTGTGAAC 11847 || ||||||| ||||| ||| |||||||||| ||||||||| |||||||||| |||||||||| CT-AATGAAC TTAATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC ATGTGTGAAC 656 TTGACGGTAA TTGTTAATGA TATAGTACTT GCTGTTGCTA CATGTTGAGT ATCATAGTTG 11787 |||||||||| |||||||||| | || | || ||| |||||| |||| ||||| || |||||| TTGACGGTAA TTGTTAATGA TNAAGAAATT GCTATTGCTA CATGATGAGT ATTGTAGTTG 716 ATTTTATGAT ATTACTTGGT ATATATTGAT TTCTATTTTG AGTTGGCCGA TGATATCTAC 11727 | |||| | |||| ||| | |||||||| | |||||||| |||| | ||| |||||||||| A-TTTACATT ATTA-TTGAT ATATATTGTT CCCTATTTTG AGTTAG-CGA TGATATCTAC 773 T 11726 | T 774 hqPGS_C09HBa0278J12.1-_SGN-E349977+ (16680 16653,12376 12076,12045 11726) ******************************************************************************** EST sequence 288 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 12344 to 7990): Exon 1 11744 11270 ( 475 n); cDNA 1 488 ( 488 n); score: 0.843 MATCH C09HBa0278J12.1- SGN-E351546+ 0.843 475 0.652 C PGS_C09HBa0278J12.1-_SGN-E351546+ (11744 11270) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACTCCTACTT TTATG-TTTT 11686 |||||||||| |||||||||| |||| ||||| |||||||||| || ||||||| ||||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTCTTGTTT AATTGTAGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 11626 ||||||| | | |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTG-GT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT TCAGTACTCC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGT TTGGACTGGA 11567 ||||||||| || || || |||| |||| |||||||||| |||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTTTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAACTT- TTATGT-A-T 11510 ||||| || |||||||||| ||||||||| |||||||||| ||||| ||| |||||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGGTTC TTAGAAACTC TTAGATTTAG TAATTTGAAG TAGATGTTCT TGTGATGATG 11450 |||||| ||| |||||||||| ||||| |||| || ||| ||| |||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG-A-A ATA-ATAGTT -AT--T-G-A -AT-TGGTTT TTATTAATGA 11400 |||||||| | |||||| | | ||| || || || | | | | | | || |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAC TTTATGTTGA TATTACATTA AAATGTTAAG GTTTAGATTG 11340 |||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CGCGGCTCGG TATTTGGGTC 11280 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG -ATTTGGGTC 478 GTGACACGAC 11270 |||||| || GTGACAAAAC 488 hqPGS_C09HBa0278J12.1-_SGN-E351546+ (11744 11270) ******************************************************************************** EST sequence 387 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 12344 to 9480): Exon 1 11744 11270 ( 475 n); cDNA 1 488 ( 488 n); score: 0.845 MATCH C09HBa0278J12.1- SGN-E356206+ 0.845 475 0.819 C PGS_C09HBa0278J12.1-_SGN-E356206+ (11744 11270) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACTCCTACTT TTATG-TTTT 11686 |||||||||| |||||||||| |||| ||||| |||||||||| || ||||||| ||||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTCTTGTTT AATTGTAGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 11626 ||||||| || | |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTG-TT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT TCAGTACTCC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGT TTGGACTGGA 11567 ||||||||| || || || |||| |||| |||||||||| |||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTTTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAACTT- TTATGT-A-T 11510 ||||| || |||||||||| ||||||||| |||||||||| ||||| ||| |||||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGGTTC TTAGAAACTC TTAGATTTAG TAATTTGAAG TAGATGTTCT TGTGATGATG 11450 |||||| ||| |||||||||| ||||| |||| || ||| ||| |||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG-A-A ATA-ATAGTT -AT--T-G-A -AT-TGGTTT TTATTAATGA 11400 |||||||| | |||||| | | ||| || || || | | | | | | || |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAC TTTATGTTGA TATTACATTA AAATGTTAAG GTTTAGATTG 11340 |||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CGCGGCTCGG TATTTGGGTC 11280 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG -ATTTGGGTC 478 GTGACACGAC 11270 |||||| || GTGACAAAAC 488 hqPGS_C09HBa0278J12.1-_SGN-E356206+ (11744 11270) ******************************************************************************** EST sequence 402 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 12344 to 8730): Exon 1 11744 11270 ( 475 n); cDNA 1 488 ( 488 n); score: 0.843 MATCH C09HBa0278J12.1- SGN-E356696+ 0.843 475 0.725 C PGS_C09HBa0278J12.1-_SGN-E356696+ (11744 11270) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACTCCTACTT TTATG-TTTT 11686 |||||||||| |||||||||| |||| ||||| |||||||||| || ||||||| ||||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTCTTGTTT AATTGTAGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 11626 ||||||| || | |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTG-TT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT TCAGTACTCC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGT TTGGACTGGA 11567 ||||||||| || || || |||| |||| |||||||||| |||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTTTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAACTT- TTATGT-A-T 11510 ||||| || |||||||||| ||||||||| |||||||||| ||||| ||| |||||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGGTTC TTAGAAACTC TTAGATTTAG TAATTTGAAG TAGATGTTCT TGTGATGATG 11450 |||||| ||| |||||||||| ||||| |||| || ||| ||| |||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG-A-A ATA-ATAGTT -AT--T-G-A -AT-TGGTTT TTATTAATGA 11400 |||||||| | |||||| | | ||| || || || | | | | | | || |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAC TTTATGTTGA TATTACATTA AAATGTTAAG GTTTAGATTG 11340 |||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CGCGGCTCGG TATTTGGGTC 11280 |||||||||| ||||||| || |||||||||| |||||||||| ||||| ||| ||||||||| GTTGGTTCGC TCACATANGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG -ATTTGGGTC 478 GTGACACGAC 11270 |||||| || GTGACAAAAC 488 hqPGS_C09HBa0278J12.1-_SGN-E356696+ (11744 11270) ******************************************************************************** EST sequence 80 -strand 840 n (File: SGN-E542084-) 1 GTTGCTGTAC ATATTCTACA AGGCATAATT TTCTTGAAAT TCCCAATATT GACACCTCAA 61 TGCAGCAAAC ATCATCTTTG CATAGAGATG GTTTTCCAAA ACAGACAGCA TTTATCATCT 121 GAGAAATTTC GGGGCTTTCT GAAAAAGAAA TAGAGTAGTC AGGAACTATC AACATGTATA 181 TAAAGCATCT AACTTTTCTA ATGACATCTT CATGGATGAT GTTGTCCAAC ACGAAGGTCT 241 CAGATGATCT CCAAACTAAA TCACCAAATG AGAGTGTTAT TTCTGCGTAA GCTCTTCCAT 301 CGCGTCTGCT AGCTTACACT CTCATTTACT TTGCAATGGG ATTCCTCTTT GGTTCCTCCT 361 TCAGCTTCTT CTCATTCCCG GTGTGCTTTC CCTTCTCCTC CGTCCACTGA TTTTAGCAAA 421 CGTGCCGTCA TCTTCGACTC AACAGTAACT CTAGCCAGTC TTCATTACTT CGGATATCAG 481 GGTGAGCTAA TGCTTTCTAG ATTGGACTGG ATCTTCCTCT TCATGTCTTG ATGTCTTGAA 541 GTTCCGGCAT GGACTAGCTT TTATGTATTT TTTAGCTTCT TAGAAACTCT TAGATTTAGT 601 AATTTGAAGT AGATGTTCTT ATGATGATGA CTTCCAGATT TTGGGAAATA ATAGTTATTG 661 AATTGGTTTT CATTAATAAG TTTAAGTCTT CCGCATTACT TTATGTTGAT ATTACATTGA 721 AATGTTAAGG TTTGGATTGG TTGGTTCGCT CACATAGCAG GGTAAGTGTG GGTGCCAGTC 781 GCGATCCGAT TTGGGTCGTG ACATTTATAG AAGTAAGAAA TTTTCCCCTA AAAAAAAAAA Predicted gene structure (within gDNA segment 16412 to 10126): Exon 1 15317 15255 ( 63 n); cDNA 346 403 ( 58 n); score: 0.667 Intron 1 15254 12914 (2341 n); Pd: 0.983 (s: 0.66), Pa: 0.988 (s: 0) Exon 2 12913 12906 ( 8 n); cDNA 404 409 ( 6 n); score: 0.500 Intron 2 12905 11668 (1238 n); Pd: 0.320 (s: 0), Pa: 0.998 (s: 0.94) Exon 3 11667 11274 ( 394 n); cDNA 410 803 ( 394 n); score: 0.937 PPA cDNA 830 840 MATCH C09HBa0278J12.1- SGN-E542084- 0.899 465 0.554 C PGS_C09HBa0278J12.1-_SGN-E542084- (15317 15255,12913 12906,11667 11274) Alignment (genomic DNA sequence = upper lines): TCTTTGCCCT CTCTCTTTGC CTCTCTCCTC TCTCTTCCAG TATCGCTCTC CTCTCACCTC 15258 |||||| | | ||| || | || || || || | || | | | ||| || | || |||| TCTTTG-GTT C-CTCCTT-C AGCT-TCTTC TCATTCCCGG TGT-GCTTTC CCTTCTCCTC 400 CCTGTAACTA TAATTATGAA TTGTAATTAT CAACCTATTC AGACTATTTT AGTTGCTATC 15198 | | CGT....... .......... .......... .......... .......... .......... 403 TGTGAAAGTT TCTCTATTTT AATCAATATT TTTAAATATA TCTCGAAAAG AAAAGAAAAA 15138 .......... .......... .......... .......... .......... .......... 403 AAATAAAAAA TATCACATAA ATTAAAATAC GAAACTTCTA ATATTCATAC CTGGTAATTA 15078 .......... .......... .......... .......... .......... .......... 403 GCCTAATTTA GCATCACTTT TGAATGTTAG ATCATAAGGA TGGAATTTTC CGATGTACAA 15018 .......... .......... .......... .......... .......... .......... 403 AACAGAGTTG CTGGAATATT GTGATAATAG ATATCAAAAT TTACTCTGAC ATCGTCGCAA 14958 .......... .......... .......... .......... .......... .......... 403 TTCTCGAAAA TCATTCTTTG TGAGTAACCT TTAGCTAACA ACGCCGTGAT GTTAGAGGTG 14898 .......... .......... .......... .......... .......... .......... 403 GTGTCGTGAG ATGTGCCAGA GTGAACATAT AATCGATTTG GCTGAGTCGA CGCTGTCATC 14838 .......... .......... .......... .......... .......... .......... 403 GACGCAAACC ACCAGTCGAA CACTTTATAT TCAAAATGAT ATAAATATAA TTATTTAATT 14778 .......... .......... .......... .......... .......... .......... 403 GACTATTGAA TTATCAATTA ATTCATTAAA AAAAAATTTC AATTCATTAA AATCAATAAC 14718 .......... .......... .......... .......... .......... .......... 403 CCAATAAAAA AAATAAAACC ATTATCCGAA CCACTAAACA ATAACCCATT ATTGATAGTT 14658 .......... .......... .......... .......... .......... .......... 403 TCGATTTTGA TTCAATTTAA GTTAGGGTGG TGGACATGTT AGTTGATCTG ACAATGTATA 14598 .......... .......... .......... .......... .......... .......... 403 TTTAATTTTT AATTATTCAA AACATGTAAT CTGAATTGTT AAAATTAATA AAAGAATTTA 14538 .......... .......... .......... .......... .......... .......... 403 ATACTAAATC AAAAAAAAAA AAATGAAGAG TCAGTAATTC TAACACCTTG AAGAATTATG 14478 .......... .......... .......... .......... .......... .......... 403 TATATCACAA AAGTCAAAAT TATAAGTTAC ATATTTAAAA ATAATATAAA ATTTAAATGA 14418 .......... .......... .......... .......... .......... .......... 403 TTATTTTGAA AATATTGAGC CTCTTCATTT GCTATGTTCT TGGTTCAATA GCAATTCAAT 14358 .......... .......... .......... .......... .......... .......... 403 TCCTCCTTAT GTCTATTAAG TATTAATAGC ATCCTAACAA TTTATCAATT TCTAGCTTAT 14298 .......... .......... .......... .......... .......... .......... 403 GAAATAACAC ATGTCATTAT TTTTTAACGG TGATTATGTA AATTCATTGT TGAAACGTGA 14238 .......... .......... .......... .......... .......... .......... 403 TCGAATTATA ATTGGCCATC GTTATCAATT TTTTATTAAA AGTTCAAACA AAATAATTCA 14178 .......... .......... .......... .......... .......... .......... 403 ATCTTTATTC AGAATTTTGA TTTTTATATT AAAATAATTA ATGATAGCGG TCAATTATAA 14118 .......... .......... .......... .......... .......... .......... 403 TTCGGTCACA TCATCAATTT ATTTAATTAT GATTTTTTTC TCCAGAATTA TGATTTTTTT 14058 .......... .......... .......... .......... .......... .......... 403 ATTTAAAAAA ATTGATGACA TGGCCGAATT ATAATTGGCC ACGTGTCAAA AATGATTTTG 13998 .......... .......... .......... .......... .......... .......... 403 CAAAACCATT GCTAAAAGAT AATGGCATGA ATAAACCTTT TCTTTAACGG TAATGACATA 13938 .......... .......... .......... .......... .......... .......... 403 AATGAGCCAA ACTTTTAACT GATGATATAA ATAAGATTTT TCTGTAAGTT CGATTACATA 13878 .......... .......... .......... .......... .......... .......... 403 TTTGAGACTT TTCCCTAATT TTAAAATGAA ATGTAGAATC ATTTTTTCTA TGTATAATTT 13818 .......... .......... .......... .......... .......... .......... 403 GAAATATTAG TCGATTTCAA AATTATTTAC TTCATTATTT CTATTAATAA TAAAATAAAT 13758 .......... .......... .......... .......... .......... .......... 403 CATCTTATAT ATGAATTTAA ATGGAAAATT TTATTATGAA TAAGGCACAA CTTACACTAG 13698 .......... .......... .......... .......... .......... .......... 403 TTGTATGAGG GAGTATTTTA TTATTATTAT ATTTAAATTT GTGGAACCTA CACTTTATTT 13638 .......... .......... .......... .......... .......... .......... 403 TTCTTCTTTG CCTCCTATTT CTGTTTCTTG TTTTTCTCTT TCCTCTTTTT TCTCATTTTA 13578 .......... .......... .......... .......... .......... .......... 403 ATTTTTTTTC TTCTTTAAAT TTATTTTGAA ACCGATTTAA TTACTTTTTT TTATCCATTT 13518 .......... .......... .......... .......... .......... .......... 403 TTAAAAAAAA ATTATTTTAT CATTAAAAAT AAAAAGGGAT GAGCATACTT TATCAAGTTA 13458 .......... .......... .......... .......... .......... .......... 403 ATTTCTTAAA CGGTCACTTA TATCATATAT ATTGATCACT AAAATTATTT CTATTTCTTT 13398 .......... .......... .......... .......... .......... .......... 403 TTTCTCATTT TTCATAATAT AGTACTTTAA AATATTTCAC CTTCATATTT CGTATCATTT 13338 .......... .......... .......... .......... .......... .......... 403 TAAATTCTAC TTTTTAAAAT TTATCTAAAA CTTATTTTTT ACTTTATTTG ATATTGATGT 13278 .......... .......... .......... .......... .......... .......... 403 TTGATCATAA TAATTTGAAA TATAATTTTT CAACTTGTAG GTATACTTTA AATTTTAAAA 13218 .......... .......... .......... .......... .......... .......... 403 ACAAATTAGT ATAATCTATT TTTAAACTCA TTTTTCGCTT TTGATATTAT ATTTACGTAC 13158 .......... .......... .......... .......... .......... .......... 403 ATTCAATTAT GAATATTTAT TAAAATATTC TTTTATTAAA ATAAAATACA ATTTTATTTT 13098 .......... .......... .......... .......... .......... .......... 403 CAAATTTTGC TCCATATATT TCAAATATAG TTAAAAAAAC ATATTAAATA CTATGGCCAA 13038 .......... .......... .......... .......... .......... .......... 403 ATGACAAATA TTTGTTAATG TTTAGTTTAA TAACAAATGT TTCACTGTTC TCTTTTTAAT 12978 .......... .......... .......... .......... .......... .......... 403 GTTTAGTTTG ATATTAATAT TTGGACGTAC TTAAATATAA TATCAAAAGT AAAAAATGTC 12918 .......... .......... .......... .......... .......... .......... 403 GCAGGCACGA CGGCCCGTCA CAGGCTACGT AATTCACACT GGGTCGGATT TCTGTTAAGT 12858 ||| | ....CCAC-- TG........ .......... .......... .......... .......... 409 AATTTAAGGG GCGTTTTGGA CTATTCCGGC TTTAATTATA AAGTTAGTGG GTTTATATTA 12798 .......... .......... .......... .......... .......... .......... 409 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 12738 .......... .......... .......... .......... .......... .......... 409 TGCCATCTTT TATTCTTAAT TATATGCTAA TTAGGGTAAA AGAAAGAGGG TTTGAATAAG 12678 .......... .......... .......... .......... .......... .......... 409 AAAAAGAAAA GAACAGAAAG AGAGAGAAGG AGAATTGATA GAGAGAGACG AATGAAGAGG 12618 .......... .......... .......... .......... .......... .......... 409 AAAAACAAAA GCTTGGGAAA TTTGCTTGCT TGATCACGAA TCTTCGGTGG AGGTAGGTTA 12558 .......... .......... .......... .......... .......... .......... 409 TGGTTTCTTT TACGATATTC GTAATAAACT CTTAATAGCG AATGATATGT ATTGATAATA 12498 .......... .......... .......... .......... .......... .......... 409 TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA ATGAAATTAT ATAATTGTGA 12438 .......... .......... .......... .......... .......... .......... 409 TTATATAAGC ATGATGAAGT TATTGAATCC CAATATCTTG CAAAACCCTA ATCTCTTTGT 12378 .......... .......... .......... .......... .......... .......... 409 TAATGATGAG GCCTTGGTAT AAAAGAAGGC GTGATGAACT AAAATAATGA GATTGATGAT 12318 .......... .......... .......... .......... .......... .......... 409 GTCTTGGTAA GAAAGAAGGC TTGATGAATT GATAGAAGGA GATTAGGGGA TCGGGTGTCA 12258 .......... .......... .......... .......... .......... .......... 409 AGAACAGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC CGACACGTAG ATTTAGGGGA 12198 .......... .......... .......... .......... .......... .......... 409 TCGGGTGTCA CGAACCGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC CGACACGTAG 12138 .......... .......... .......... .......... .......... .......... 409 ATTTAGGGGA TCGGGTGTCA CGAATCGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC 12078 .......... .......... .......... .......... .......... .......... 409 CGACACGTAG ATTTAGGGGA CCGGAGTGTC ACGTTCCGAC ACATAGTAGT AGGGGATCGG 12018 .......... .......... .......... .......... .......... .......... 409 AGTGTCACGT ACCGACACAA GAGGATTAAT GAATATGAGG GAGCGGAGTG TCACGTACTG 11958 .......... .......... .......... .......... .......... .......... 409 ACACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA ATATACTTAA TCTAAATGAA 11898 .......... .......... .......... .......... .......... .......... 409 CATAATTTCC AAATGAGTAT GATATTGAGG CTTGAGTCCT CATGTGTGAA CTTGACGGTA 11838 .......... .......... .......... .......... .......... .......... 409 ATTGTTAATG ATATAGTACT TGCTGTTGCT ACATGTTGAG TATCATAGTT GATTTTATGA 11778 .......... .......... .......... .......... .......... .......... 409 TATTACTTGG TATATATTGA TTTCTATTTT GAGTTGGCCG ATGATATCTA CTCAGTACCC 11718 .......... .......... .......... .......... .......... .......... 409 GTGTTTTGTA CTGACTCCTA CTTTTATGTT TTCTTCTTGT TTAATTGTAG AGTGCAGCAA 11658 | | ||||| .......... .......... .......... .......... .......... ATTTTAGCAA 419 ACGTGCCGTC ATCTTCGACT CAACAGTAAC TCTAGCCAGT CTTCAGTACT CCGGATATCA 11598 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| ACGTGCCGTC ATCTTCGACT CAACAGTAAC TCTAGCCAGT CTTCATTACT TCGGATATCA 479 GGGTGAGCTA ATGC-TTCTA GTTTGGACTG GATCTTCCTT TTCATGTCTT GATGCCTTGA 11539 |||||||||| |||| ||||| | |||||||| ||||||||| |||||||||| |||| ||||| GGGTGAGCTA ATGCTTTCTA GATTGGACTG GATCTTCCTC TTCATGTCTT GATGTCTTGA 539 AGTTCCGGCA TGGACTAACT TTTATGTA-T TTTTAGGTTC TTAGAAACTC TTAGATTTAG 11480 |||||||||| ||||||| || |||||||| | |||||| ||| |||||||||| |||||||||| AGTTCCGGCA TGGACTAGCT TTTATGTATT TTTTAGCTTC TTAGAAACTC TTAGATTTAG 599 TAATTTGAAG TAGATGTTCT TGTGATGATG ACTTCCAGAT TTTGGGAAAT AATAGTTATT 11420 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TAATTTGAAG TAGATGTTCT TATGATGATG ACTTCCAGAT TTTGGGAAAT AATAGTTATT 659 GAATTGGTTT TTATTAATGA GTTTAAGTCT TCCGCATTAC TTTATGTTGA TATTACATTA 11360 |||||||||| | |||||| | |||||||||| |||||||||| |||||||||| ||||||||| GAATTGGTTT TCATTAATAA GTTTAAGTCT TCCGCATTAC TTTATGTTGA TATTACATTG 719 AAATGTTAAG GTTTAGATTG GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT 11300 |||||||||| |||| ||||| |||||||||| |||||||| | |||||||||| |||||||||| AAATGTTAAG GTTTGGATTG GTTGGTTCGC TCACATAGCA GGGTAAGTGT GGGTGCCAGT 779 CGCGGCTCGG TATTTGGGTC GTGACA 11274 ||| | || | ||||||||| |||||| CGC-GATCCG -ATTTGGGTC GTGACA 803 hqPGS_C09HBa0278J12.1-_SGN-E542084- (11667 11274) ******************************************************************************** EST sequence 132 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 15297 to 6847): Exon 1 11663 11275 ( 389 n); cDNA 1 405 ( 405 n); score: 0.766 Intron 1 11274 7564 (3711 n); Pd: 0.000 (s: 0.90), Pa: 0.985 (s: 0) Exon 2 7563 7536 ( 28 n); cDNA 406 433 ( 28 n); score: 0.589 MATCH C09HBa0278J12.1- SGN-E392027- 0.766 417 0.587 C PGS_C09HBa0278J12.1-_SGN-E392027- (11663 11275,7563 7536) Alignment (genomic DNA sequence = upper lines): CAGCAAACGT GCCGTCATCT TCGACTCAAC AGTAACTCTA GCCAGTCTTC AGTACTCCGG 11604 |||||||||| ||| || | | || ||||||| ||||| || | ||||||||| | ||| ||| CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTT- ACTACATCGG 59 ATA-TCAGGG TGAGCTAATG CTTCTAGTTT GGACTGGATC TTCCTTTTCA TGTCTTGATG 11545 | | |||||| |||||||||| ||||||| || |||||||||| ||| | |||| ||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 CCTTGAAGTT CCGGCATGGA CTAACTT-TT ATGTATTTTT AGGTTCTTAG A-AACTCTTA 11487 ||||||| || |||||||||| ||| ||| || |||||||||| || || |||| | ||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGCTT-TTAG ACTACTCTTA 178 GATTTAGTAA TTTGA-AGTA GATGTTCTTG TGATGATGAC TTCCAGATTT TGGGAAATAA 11428 | |||||| | ||||| ||| |||||||||| || ||||||| |||||||||| |||| ||||| G-TTTAGTCA TTTGATCGTA GATGTTCTTG TGGTGATGAC TTCCAGATTT TGGGGAATAA 237 T--A-GTT-- A--TT-GAA- -T--TG-GTT --T-T-TA-T TAATGAGTTT AAGTCTTCCG 11386 | | ||| | || ||| | || || | | || | |||||||||| ||||||||| TAGATGTTGA ATTTTAGAAG TTAATGAATT GGTCTGTATT TAATGAGTTT AAGTCTTCCA 297 CATTACTTTA TGTTGATATT ACATTAAAAT GTTAAGGTTT AGATTGGTTG GTTCGCTCAC 11326 ||||||||| |||||||||| | ||| |||| ||||||| || |||||||||| |||||||||| CATTACTTTC TGTTGATATT ATATTGAAAT GTTAAGG-TT AGATTGGTTG GTTCGCTCAC 356 ATAGGAGGGT AAGTGTGGGT GCCAGTCGCG GCTCGGTATT TGGGTCGTGA CACGACATAA 11266 |||||||||| |||||||||| ||||||||| | |||| || | |||||||| | ATAGGAGGGT AAGTGTGGGT GCCAGTCGCA ACCCGGT-TT T-GGTCGTGA C......... 405 CTCTATGGGA TCGTTTGGCT GGTAATAAGT TATTTCAAAA TTAATTATCC TGAAACAATT 11206 .......... .......... .......... .......... .......... .......... 405 TATTCCCTCA CTGTCCGATA AATAATCTCA AACTTTTTAA TCTCATAACT ATTTATTCTT 11146 .......... .......... .......... .......... .......... .......... 405 ATCCGTCACA CCCAATGAGC CCGTGACAAA CAACCCTAAC ACACCACACT TATTTTTGGC 11086 .......... .......... .......... .......... .......... .......... 405 AAAGAAGGAA CAACAACAAG TTAACATTAT AAAAATAAAC TGAAAAAGCT CTATCCATGA 11026 .......... .......... .......... .......... .......... .......... 405 AAAAACAGGG GAAAGAGTAA AAAAAAAAAC AGAGGAAAAT GGAGAAAATA CAGCACAAAA 10966 .......... .......... .......... .......... .......... .......... 405 CTGTCTCCGC TAATGGAATC AAAATGCACG TAGCTGAAAT CGGTGAAGGT CCAGCAGTTC 10906 .......... .......... .......... .......... .......... .......... 405 TATTTCTACA TGGCTTCCCT GAGTTATGGT ATTCATGGCG CCACCAATTG CTTTACTTTT 10846 .......... .......... .......... .......... .......... .......... 405 CAAACAAAGG TTACAGAGCT ATTGCGCCTG ATCTTCGTGG TTACGGAGAC ACTGAAATTC 10786 .......... .......... .......... .......... .......... .......... 405 CATCGGAAAT CAGTAGTTAT ACTGCTTTTC ACATTGTTGG TGATTTGATT TCTCTGTTAG 10726 .......... .......... .......... .......... .......... .......... 405 ATATTCTGGA TCTAGAAAAA GTGTTCTTAA TTGGGCATGA TTGGGGTGCT CTAATTGCTT 10666 .......... .......... .......... .......... .......... .......... 405 GGTTTTTCTG TTTGTTTCGT CCTGATCGGA TTAAAGCTTT GGTGAATCTG AGTTGTGAGT 10606 .......... .......... .......... .......... .......... .......... 405 TACGGCCCAG AAATCCGTTG CGAAAACCGA TTGATTGCTT GAGGGAATTG CTTGGTGATG 10546 .......... .......... .......... .......... .......... .......... 405 ACTATTACAT GTGCAGATTT CAGGTATTTT TTTCTCTACT GTTCAAGTAT ATTTACCAGA 10486 .......... .......... .......... .......... .......... .......... 405 TATTTTTCGA AATTGAATTA GATCTAATAT TCATTTGTTT CGCTTTTTTT TCTTAAAAAA 10426 .......... .......... .......... .......... .......... .......... 405 CTCCGAGATA GTTCTCTTTC CATTCATTTT TTTTTTTGGG TATATGAATG AAAATAAGGA 10366 .......... .......... .......... .......... .......... .......... 405 TGAAATTTTG ATAGCTGGTA TTCTTTGAGC CGATCAAAAA TTGTTTCGGA TTGAGCTATA 10306 .......... .......... .......... .......... .......... .......... 405 AGGATGTGGA TGGTAGGGAG GAAGGTGTTT TTTTTTTTTT TTTAATTTGG TTTATGGAAA 10246 .......... .......... .......... .......... .......... .......... 405 CGTAAGACAT CCTAAACTAG TATAATCGTA ACTATTGTTA AACGAATTGG TAAATTTTTA 10186 .......... .......... .......... .......... .......... .......... 405 AAAATAAATA TACAAAATAC ATGATTTTAA AACTCGTCAA CAAAGTATAT TTAGTCCAAT 10126 .......... .......... .......... .......... .......... .......... 405 AGCAATTATG AGCCTTTTAA CATTATTGCC TCTTGGGCGA TTTTACTCTT TATCTTTTAG 10066 .......... .......... .......... .......... .......... .......... 405 AGAGTAAGAT AGAGATTGTC TTTTTCAAAT ATTTTCTATT CTATTATTCT TTGCTTTCCA 10006 .......... .......... .......... .......... .......... .......... 405 AATACTCTAA ATATTATATT ATTATTTTGT AATTCACATA TTAATTTTCA TATAAGGATA 9946 .......... .......... .......... .......... .......... .......... 405 TTAATAAAAT TTCTAATATT CATAATTTTT AAAAAATATA ATATAATATC CTTAAGAATA 9886 .......... .......... .......... .......... .......... .......... 405 TATTATTTAA TATATAATAC ATCCTAAATT AATAATATTT AAGATATTTT TTTTCAATTT 9826 .......... .......... .......... .......... .......... .......... 405 TCGTCACTTC AAGTGAATAT GATTTGATGA ATTTTCGTTA TGAAAGATCC ACAAAATTCA 9766 .......... .......... .......... .......... .......... .......... 405 AATTTAAAAA TATAACACAT AACTTAATAA TTTAAATTCA ATATAACAAT ACATTACATA 9706 .......... .......... .......... .......... .......... .......... 405 ACACCATAAT TTTAAAATTA CAACAACAAC AATAATAATA ATAATTTAAT AATCAGGTAG 9646 .......... .......... .......... .......... .......... .......... 405 GTCCTTTACA AATTTAACAA TATTCGGAAA AGATTAATGT ATGATCTAAA GAAGTGGTGA 9586 .......... .......... .......... .......... .......... .......... 405 TTGTAATTGC AGTTTATCTT ATTGGTTGTT TTTTACAATT ATTTGAAATT GTTCTTTAAA 9526 .......... .......... .......... .......... .......... .......... 405 AATTCAGAAT AAAATGTAAA TCTATATTAG ATAAAGAATT TGAAAAGAAT AAACTCTATA 9466 .......... .......... .......... .......... .......... .......... 405 TTACATGAAA ATTATATAGG GTGATTAATT GGAAAAAAAA TAAAGAATAG ATTTAAGTAA 9406 .......... .......... .......... .......... .......... .......... 405 CGATATAATA TTGAGGTGAG ATAATAAGAT TCTTTTTTAG AAAAGTAAAA TAGAGATTTG 9346 .......... .......... .......... .......... .......... .......... 405 AATTGGAGTT GATTGTTTGG AGAATTAGTG AAGTCTATAT TTGAAAGTAA AATAGAGGAT 9286 .......... .......... .......... .......... .......... .......... 405 AAGGATGAAT ATGTCTATGA ATAAAAATCT ACAAACTTCA AATTTTGAAT ATTCATTTGA 9226 .......... .......... .......... .......... .......... .......... 405 CTTTTCTTAT AAAAGTAGAG AAAACCTCCG ATTTTCTCCA TAAAATAGAG AAAATAAGTT 9166 .......... .......... .......... .......... .......... .......... 405 TTACGAGCAA CATTTCACAT GATAACGTTT TTTTCCATGC TCCCACACAC CTCATCTTTA 9106 .......... .......... .......... .......... .......... .......... 405 CCTCACACCC TCATAGCCCT CATCCCACTC TTACTCCCAT AAGTATTTAT CAAAATTAGC 9046 .......... .......... .......... .......... .......... .......... 405 TATGCTAATA TTTTTTACTT ACGTATCAAA CATAAAAAAA TAAATAACAA ACTCACTAAT 8986 .......... .......... .......... .......... .......... .......... 405 TTTTTTAAAA AAAACATTTT TTAAGAAAAT ATCTTCATTC AAACAAAACA CCCCAAAGAA 8926 .......... .......... .......... .......... .......... .......... 405 ATATCTTATA TTAAGTAAAT TTCTTAAATT CTTGTTTGTT CGTTTTTATG AGCTCTCACT 8866 .......... .......... .......... .......... .......... .......... 405 TTCAAGTTTG TGCTCACTTA GTTTCCTCCA ATGAAGAGAG CAAACGGTTT AATGACATGT 8806 .......... .......... .......... .......... .......... .......... 405 CGTTCATTTC TACTTATTAA ACATTAATTA AATTTCTGTT TTTACTTATT ATTTTTATAA 8746 .......... .......... .......... .......... .......... .......... 405 ATTAATATTA AATTAATTTA TTTATGTTAA ATTAATGTCT TTTTAAACAA ATAGCGAGTA 8686 .......... .......... .......... .......... .......... .......... 405 AATACAGAAG CATATTCTTG AAATAAAAGC ACTGAAATAA ACACTCTAGC TGGATTCAGA 8626 .......... .......... .......... .......... .......... .......... 405 CTCAGATTTC ACAATTCTCC ACCTTGTATC GGCATCACAA TAACACTCTT ATACTTCTCA 8566 .......... .......... .......... .......... .......... .......... 405 TGGGGCACTA TTAATTACAT CCTTATTTCT GTCAGTTTCT CCAAATAAAT ATATGTATAT 8506 .......... .......... .......... .......... .......... .......... 405 ATTAGACATA ATTTTTTTTT CGAAATTAAC AGATACTACA TATTTTTGTG ATTTTCTAAT 8446 .......... .......... .......... .......... .......... .......... 405 AGTATGCTAT TATTTAGAAA CCTGGGGAAG TGGAAGAGGA ATTTGCTTCA ATTGATACTG 8386 .......... .......... .......... .......... .......... .......... 405 CAAAACTCAT CATAGGATTT CTTTCTTCAC GTGATACACG TCCACCTTGC ATTCCCAAAG 8326 .......... .......... .......... .......... .......... .......... 405 AGATTGGCTT TCATCAGGCC TTTGCTCAGT TACCAGCAGC ATTACCTTCA TGGCTAACAC 8266 .......... .......... .......... .......... .......... .......... 405 AAGAAGATGT CAATTATTAT GCTGAAAAAT TAAACAAAAC TGGCTTTACT GGAGGATTGA 8206 .......... .......... .......... .......... .......... .......... 405 ACTACTATAG AAACATGGAC AAGTATGTAT ACCCCCAATA TACTTTATAC GTTTTAATTT 8146 .......... .......... .......... .......... .......... .......... 405 GTCTGTCTAA TTCTTGATTT GATACAGTTT TAGAAAAAAG TAGAGAAAGC TTTTGAATGT 8086 .......... .......... .......... .......... .......... .......... 405 TATATAATTT TAAACGAAAA AATCTATGAA ATATATCACT TTTCAATTTT CCTAAAATTA 8026 .......... .......... .......... .......... .......... .......... 405 ACGTTTAATT TGTTTATGAA ATTATGAATA GAATTTAAAC TTTAATTTCA AATCATGATT 7966 .......... .......... .......... .......... .......... .......... 405 TAAAGTTTCA TATTTTCTTT GAAGAATAAT AGGATTTAAA ATTTCTAAGT TGTGATTTCA 7906 .......... .......... .......... .......... .......... .......... 405 ATATATATAT TTTAAAAATA TAATAAGTTT CTATTTTGTG AAAAAAGATC TATTGTTTTA 7846 .......... .......... .......... .......... .......... .......... 405 AATTCTACAA TAAAAACTCA TGCTTAATGT AAATAGATTA TTTTTACCAT GTGGAATAAT 7786 .......... .......... .......... .......... .......... .......... 405 CTTACTAGAG AATATTAGTT ATTACTACTA TGGTTGATAT TTTGAACGTT TATAATAACA 7726 .......... .......... .......... .......... .......... .......... 405 TATGATCATA AATATTATCT TATTAAAGAT TGTATAAGAG TGAATTCGAT AGTTTTCACA 7666 .......... .......... .......... .......... .......... .......... 405 TATTGTTGAA TTTTCATGTT TACGAGAATA AAATATAATA AAAAATTTAA TTACATATTC 7606 .......... .......... .......... .......... .......... .......... 405 AAATAAAAAT TTCAACTTCA AATTAATCTG ATTTCGATGC AGAAACTGGG AGCTCACAGC 7546 ||||| || ||| ||| .......... .......... .......... .......... ..AAACTTGG -TATCAGAGC 422 CCTA-TTTAG T 7536 || || | | ATTAGGTTCG T 433 hqPGS_C09HBa0278J12.1-_SGN-E392027- (11663 11275) ******************************************************************************** EST sequence 279 +strand 405 n (File: SGN-E336814+) 1 CCCAAAGCAA ACAAAGCACT TCATGATCAT GGATTGACAT ATTGCTAATT TTCATTATCT 61 TCTGCTTTCC CTTGCATTAT TTTTTATGAC AAGGAAACCC GCAACTACTC CTTTGCAATA 121 GCTTGCAAAT CACACAAGAG AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG 181 CCAGTCTTCA TTATTCCGGA TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT 241 CCTCTTCATG TCTTGATGTC TTGAAGTTCC GGCATGGACT AGCTTTCTTG TATTTTAGCT 301 TTTTAGAACA CTCTTAGTTT AGTACTTTGA TCATAGATGT TCTTGTGGTG ATGACTTCCA 361 GATTTTGGGG ATAATAATAG TTATTGATTT TATTAAAAAA AAAAA Predicted gene structure (within gDNA segment 13662 to 9672): Exon 1 11662 11403 ( 260 n); cDNA 141 402 ( 262 n); score: 0.858 MATCH C09HBa0278J12.1- SGN-E336814+ 0.858 260 0.642 C PGS_C09HBa0278J12.1-_SGN-E336814+ (11662 11403) Alignment (genomic DNA sequence = upper lines): AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA GTACTCCGGA 11603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||||| AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA TTATTCCGGA 200 TATCAGGGTG AGCTAATGCT TCTAGTTTGG ACTGGATCTT CCTTTTCATG TCTTGATGCC 11543 ||| | |||| |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||| | TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGTC 260 TTGAAGTTCC GGCATGGACT AACTTTTATG TATTTTTAGG TTCTTAGAA- ACTCTTAGAT 11484 |||||||||| |||||||||| | |||| || || |||||| || |||||| |||||||| | TTGAAGTTCC GGCATGGACT AGCTTTCTTG TA-TTTTAGC TTTTTAGAAC ACTCTTAG-T 318 TTAGTAATTT GA-AGTAGAT GTTCTTGTGA TGATGACTTC CAGATTTT-G GGA-AATAAT 11427 |||||| ||| || ||||| ||||||||| |||||||||| |||||||| | ||| |||||| TTAGTACTTT GATCATAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGATAATAAT 378 AGTTATTGAA TTGGTTTTTA TTAA 11403 ||||||||| || || | || AGTTATTGAT TTTATTAAAA AAAA 402 hqPGS_C09HBa0278J12.1-_SGN-E336814+ (11662 11403) ******************************************************************************** EST sequence 257 +strand 299 n (File: SGN-E373117+) 1 TCTTCTAGCT TGTCCAAATA CTGTCGTAAT TTTGGCAAAC GTACCGTCGT CTTCAACTCA 61 ACCGCAACTC TAGCCAGTCT TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT 121 TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 181 TATGTATTTT AGCTTCTTAG ATACTCTTAG ATTTAGTAAT TTGAAGTAGA TGTTCTTGTG 241 ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 13528 to 10454): Exon 1 11661 11403 ( 259 n); cDNA 35 291 ( 257 n); score: 0.882 MATCH C09HBa0278J12.1- SGN-E373117+ 0.882 259 0.866 C PGS_C09HBa0278J12.1-_SGN-E373117+ (11661 11403) Alignment (genomic DNA sequence = upper lines): GCAAACGTGC CGTCATCTTC GACTCAACAG TAACTCTAGC CAGTCTTCAG TACTCCGGAT 11602 |||||||| | |||| ||||| ||||||| | ||||||||| ||||||||| ||| ||||| GCAAACGTAC CGTCGTCTTC AACTCAACCG CAACTCTAGC CAGTCTTCAT TACATCGGAT 94 ATCAGGGTGA GCTAATGCTT CTAGTTTGGA CTGGATCTTC CTTTTCATGT CTTGATGCCT 11542 ||||||||| ||||| |||| |||| ||||| |||||||||| | ||||||| |||||||||| TTCAGGGTGA GCTAACGCTT CTAGCTTGGA CTGGATCTTC TTCTTCATGT CTTGATGCCT 154 TGAAGTTCCG GCATGGACTA ACT-TTTATG TATTTTTAGG TTCTTAGAAA CTCTTAGATT 11483 |||||||||| |||||||||| || |||||| || |||||| |||||||| | |||||||||| TGAAGTTCCG GCATGGACTA GCTGTTTATG TA-TTTTAGC TTCTTAGATA CTCTTAGATT 213 TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGA AATAATAGTT 11423 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| | TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGG- GATAATAATA 272 ATTGAATTGG TTTTTATTAA 11403 ||| | | |||||| || GTTG-TTGAG TTTTTAGAAA 291 hqPGS_C09HBa0278J12.1-_SGN-E373117+ (11661 11403) ******************************************************************************** EST sequence 54 -strand 299 n (File: SGN-E373116-) 1 CTCTTCTAGC TTGTCCAAAT ACTGTCGTAA TTTTGGCAAA CGTACCGTCG TCTTCAACTC 61 AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG GGTGAGCTAA CGCTTCTAGC 121 TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTGT 181 TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 241 GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA Predicted gene structure (within gDNA segment 13548 to 10474): Exon 1 11661 11403 ( 259 n); cDNA 36 296 ( 261 n); score: 0.867 MATCH C09HBa0278J12.1- SGN-E373116- 0.867 259 0.866 C PGS_C09HBa0278J12.1-_SGN-E373116- (11661 11403) Alignment (genomic DNA sequence = upper lines): GCAAACGTGC CGTCATCTTC GACTCAACAG TAACTCTAGC CAGTCTTCAG TACTCCGGAT 11602 |||||||| | |||| ||||| ||||||| | ||||||||| ||||||||| ||| ||||| GCAAACGTAC CGTCGTCTTC AACTCAACCG CAACTCTAGC CAGTCTTCAT TACATCGGAT 95 ATCAGGGTGA GCTAATGCTT CTAGTTTGGA CTGGATCTTC CTTTTCATGT CTTGATGCCT 11542 ||||||||| ||||| |||| |||| ||||| |||||||||| | ||||||| |||||||||| TTCAGGGTGA GCTAACGCTT CTAGCTTGGA CTGGATCTTC TTCTTCATGT CTTGATGCCT 155 TGAAGTTCCG GCATGGACTA ACT-TTTATG TATTTTTAGG TTCTTAGAAA CTCTTAGATT 11483 |||||||||| |||||||||| || |||||| || |||||| |||||||| | |||||||||| TGAAGTTCCG GCATGGACTA GCTGTTTATG TA-TTTTAGC TTCTTAGATA CTCTTAGATT 214 TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTT-GGG A-AATAATAG 11425 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| | |||||||| TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 274 TTATTGAATT GGTTTTTATT AA 11403 || |||| || | | || TTGTTGAGTT TTTAGAAAAA AA 296 hqPGS_C09HBa0278J12.1-_SGN-E373116- (11661 11403) ******************************************************************************** EST sequence 302 +strand 219 n (File: SGN-E298638+) 1 TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 61 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG 121 ATACTCTTAG ATTTAGTAAT TTGAAGTACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 181 GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 12728 to 10337): Exon 1 11615 11403 ( 213 n); cDNA 1 211 ( 211 n); score: 0.871 MATCH C09HBa0278J12.1- SGN-E298638+ 0.871 213 0.973 C PGS_C09HBa0278J12.1-_SGN-E298638+ (11615 11403) Alignment (genomic DNA sequence = upper lines): TCAGTACTCC GGATATCAGG GTGAGCTAAT GCTTCTAGTT TGGACTGGAT CTTCCTTTTC 11556 ||| ||| | |||| ||||| ||||||||| |||||||| | |||||||||| |||| | ||| TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 60 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAACT-TT TATGTATTTT TAGGTTCTTA 11497 |||||||||| |||||||||| |||||||||| |||| || || |||||| ||| ||| |||||| ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTA-TTT TAGCTTCTTA 119 GAAACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT GATGATGACT TCCAGATTTT 11437 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| GATACTCTTA GATTTAGTAA TTTGAAGTAC ATGTTCTTGT GATGATGACT GCCAGATTTT 179 GGGAAATAAT AGTTATTGAA TTGGTTTTTA TTAA 11403 ||| ||||| | | ||| | ||||||| || GGG-GATAAT AATAGTTG-T TGAGTTTTTA GAAA 211 hqPGS_C09HBa0278J12.1-_SGN-E298638+ (11615 11403) ******************************************************************************** EST sequence 383 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 12828 to 9763): Exon 1 12048 11570 ( 479 n); cDNA 1 481 ( 481 n); score: 0.914 MATCH C09HBa0278J12.1- SGN-E246710+ 0.914 479 0.996 C PGS_C09HBa0278J12.1-_SGN-E246710+ (12048 11570) Alignment (genomic DNA sequence = upper lines): CACGTTCCGA CACATAGTAG TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 11989 ||| |||| || |||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 60 TGAATA-TGA GGGAGCGGAG TGTCACGTAC TGACACAAGA GAAATAAAGA TAATGAATCT 11930 |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 120 TGAAAGATGT TAATATACTT AATCTAAATG AACATAATTT CCAAATGAGT ATGATATTGA 11870 |||||||||| ||||||||| ||||| |||| ||||| ||| |||||||||| ||| |||||| TGAAAGATGT TAATATACTC AATCT-AATG AACATGATTC CCAAATGAGT ATGGTATTGA 179 GGCTTGAGTC CTCATGTGTG AACTTGACGG TAATTGTTAA TGATATAGTA CTTGCTGTTG 11810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| GGCTTGAGTC CTCATGTGTG AACTTGACGG TAATTGTTAA TGATATAGTA TTTGTTGTTG 239 CTACATGTTG AGTATCATAG TTGATTTTAT GATATTACTT GG--TATATA TTGATTTCTA 11752 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||||||||| CTACATGTTG AGTATCATAG TTGATTTTAT GATATTACTT GGTATATATA TTGATTTCTA 299 TTTTGAGTTG GCCGATGATA TCTACTCAGT ACCCGTGTTT TGTACTGACT CCTACTTTTA 11692 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTTGAGTTG GCCGATGATA TCTACTCAGT ACCCGTGTTT TGTACTGACC CCTACTTTTA 359 TGTTTTCTTC TTGTTTAATT GTAGAGTGCA GCAAACGTGC CGTCATCTTC GACTCAACAG 11632 |||| ||||| ||||||| || || ||||||| |||||||||| | || | ||| ||||||||| TGTTCTCTTC TTGTTTATTT GTGGAGTGCA GCAAACGTGC CATCGTGTTC AACTCAACAG 419 TAACTCTAGC CAGTCTTCAG TACTCCGGAT A-TCAGGGTG AGCTAATGCT TCTAGTTTGG 11573 ||| || ||| ||||||| | ||| |||| | |||||||| |||||||||| ||||| |||| TAATTCAAGC CAGTCTT-AC TACATCGGAA ATTCAGGGTG AGCTAATGCT TCTAGCTTGG 478 ACT 11570 ||| ACT 481 hqPGS_C09HBa0278J12.1-_SGN-E246710+ (12048 11570) ******************************************************************************** EST sequence 125 -strand 337 n (File: SGN-E357033-) 1 GGATAGCGTT CATGAAACTG TCATGTAGAT TTAGGGGATC GGAGTGTCAT GTGTTCACAC 61 AAGAGGATTA ATGAATATGA GGGAGCGGAA TGTCATGTTC CGTCACAAGA GAAATAAAGA 121 TAATGAATCT TGAAAGATGT TAATATACTA AATCTAATGA ACATGATTCC CAAATGAGTA 181 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACGTGACGGT AATTGTTAAT GATATAGTGC 241 TTGTTGTTGC TACATGTTGA GTATCATAGT TGATTTTATG ATAATNCTTG ATATATATTG 301 ATTTCTATTT TGAGTTGGGC GATGATATCT ATTCAGT Predicted gene structure (within gDNA segment 12948 to 10951): Exon 1 12028 11722 ( 307 n); cDNA 32 337 ( 306 n); score: 0.925 MATCH C09HBa0278J12.1- SGN-E357033- 0.925 307 0.911 C PGS_C09HBa0278J12.1-_SGN-E357033- (12028 11722) Alignment (genomic DNA sequence = upper lines): TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA TGAATATGAG GGAGCGGAGT 11969 |||||||||| |||||||| | | ||||| |||||||||| |||||||||| |||||||| | TAGGGGATCG GAGTGTCATG TGTTCACACA AGAGGATTAA TGAATATGAG GGAGCGGAAT 91 GTCACGTACT GACACAAGAG AAATAAAGAT AATGAATCTT GAAAGATGTT AATATACTTA 11909 |||| || | | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | GTCATGTTCC GTCACAAGAG AAATAAAGAT AATGAATCTT GAAAGATGTT AATATACTAA 151 ATCTAAATGA ACATAATTTC CAAATGAGTA TGATATTGAG GCTTGAGTCC TCATGTGTGA 11849 |||| ||||| |||| ||| | |||||||||| || ||||||| |||||||||| |||||||||| ATCT-AATGA ACATGATTCC CAAATGAGTA TGGTATTGAG GCTTGAGTCC TCATGTGTGA 210 ACTTGACGGT AATTGTTAAT GATATAGTAC TTGCTGTTGC TACATGTTGA GTATCATAGT 11789 || ||||||| |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| ACGTGACGGT AATTGTTAAT GATATAGTGC TTGTTGTTGC TACATGTTGA GTATCATAGT 270 TGATTTTATG ATATTACTTG GTATATATTG ATTTCTATTT TGAGTTGGCC GATGATATCT 11729 |||||||||| ||| | |||| ||||||||| |||||||||| |||||||| | |||||||||| TGATTTTATG ATAATNCTTG ATATATATTG ATTTCTATTT TGAGTTGGGC GATGATATCT 330 ACTCAGT 11722 | ||||| ATTCAGT 337 hqPGS_C09HBa0278J12.1-_SGN-E357033- (12028 11722) ******************************************************************************** EST sequence 420 +strand 239 n (File: SGN-E391780+) 1 TCACAAACCG ACATATAGAT TTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA 61 ATGAATATTG AGGGAGCGGA GTGTCACGTA CCGACACAAG AGAAATAAAG ATAATGAATC 121 TTGAAAGATG TTAATATACT CAATCTAATG AACATGATTC CCAAATGAGT ATGGTATTGA 181 GGCTTGAGTC CTCATGTGTG AACTTGACGG TAATTGTTAA TGATATAGTA TTTGTTGAT Predicted gene structure (within gDNA segment 12838 to 11120): Exon 1 12049 11813 ( 237 n); cDNA 1 237 ( 237 n); score: 0.926 MATCH C09HBa0278J12.1- SGN-E391780+ 0.926 237 0.992 C PGS_C09HBa0278J12.1-_SGN-E391780+ (12049 11813) Alignment (genomic DNA sequence = upper lines): TCACGTTCCG ACACATAGTA GTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA 11990 |||| ||| ||| |||| ||||||||| |||||||||| |||||||||| |||||||||| TCACAAACCG ACATATAGAT TTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA 60 ATGAATA-TG AGGGAGCGGA GTGTCACGTA CTGACACAAG AGAAATAAAG ATAATGAATC 11931 ||||||| || |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATGAATATTG AGGGAGCGGA GTGTCACGTA CCGACACAAG AGAAATAAAG ATAATGAATC 120 TTGAAAGATG TTAATATACT TAATCTAAAT GAACATAATT TCCAAATGAG TATGATATTG 11871 |||||||||| |||||||||| ||||| ||| |||||| ||| ||||||||| |||| ||||| TTGAAAGATG TTAATATACT CAATCT-AAT GAACATGATT CCCAAATGAG TATGGTATTG 179 AGGCTTGAGT CCTCATGTGT GAACTTGACG GTAATTGTTA ATGATATAGT ACTTGCTG 11813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||| || AGGCTTGAGT CCTCATGTGT GAACTTGACG GTAATTGTTA ATGATATAGT ATTTGTTG 237 hqPGS_C09HBa0278J12.1-_SGN-E391780+ (12049 11813) ******************************************************************************** EST sequence 440 +strand 717 n (File: SGN-E349726+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CATAGATTAG GGGATCGGGT 421 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 481 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CAGGTGTCAC GAACCGACAC 541 GTAGATTTAG GGGATCGGAG TGTCACGTTC CGACACGTAG ATTTAGGGGA TCAGAGTATC 601 ACGTACCGAC ACAAGAAGAT TAATGAATAT GANGGAGCGG AATGTCACGT ACCGACACAA 661 GAGAAATAAA GACAATGAAT CTTGAAAGAT GTTATATACT CAATCTAATG AACATAA Predicted gene structure (within gDNA segment 13738 to 11078): Exon 1 12577 11934 ( 644 n); cDNA 4 632 ( 629 n); score: 0.899 MATCH C09HBa0278J12.1- SGN-E349726+ 0.899 644 0.898 C PGS_C09HBa0278J12.1-_SGN-E349726+ (12577 11934) Alignment (genomic DNA sequence = upper lines): TCTTCGGTGG AGGTAGGTTA TGGTTTCTTT TACGATATTC GTAATAAACT CTTAATAGCG 12518 |||||||||| |||||||||| | |||||| | |||||||||| ||| |||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA 12458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA 123 ATGAAATTAT ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAATATCTTG 12398 ||| || ||| |||||||| | |||||||||| |||||||||| |||||||||| ||| |||||| ATGTAACTAT ATAATTGTTA TTATATAAGC ATGATGAAGT TATTGAATCC CAA-ATCTTG 182 CAAAACCCTA ATCTCTTTGT TAATGATGAG GCCTTGGTAT AAAAGAAGGC GTGATGAACT 12338 |||| |||| |||||||| | ||||||||| ||||||||| ||||||| ||||||||| TAAAAACCTA ATCTCTTT-T TAATGATGAT GCCTTGGTAA GGGAGAAGGC TTGATGAACT 241 AAAATAATGA GATTGATGAT GTCTTGGTAA GAAAGAAGGC TTGATGAATT GATAGAAGGA 12278 ||| |||||| |||||||||| | |||||||| | ||||||| |||||||||| ||||||| || AAAGTAATGA GATTGATGAT GCCTTGGTAA GGGAGAAGGC TTGATGAATT GATAGAATGA 301 GATTAGGGGA TCGGGTGTCA AGAACAGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC 12218 |||||||||| |||||||||| |||| |||| |||||| ||| |||||||||| |||||| ||| GATTAGGGGA TCGGGTGTCA CGAACTGACA CGTAGAATTA GGGGATCGGG TGTCACAAAC 361 CGACACGTAG ATTTAGGGGA TCGGGTGTCA CGAACCGACA CGTAGATTTA GGGGATCGGG 12158 |||||||||| | ||| |||| || ||||||| |||||| ||| | |||| ||| |||||||||| CGACACGTAG A-TTAAGGGA TCAGGTGTCA CGAACCAACA CATAGA-TTA GGGGATCGGG 419 TGTCACGAAC CGACACGTAG ATTTAGGGGA TCGGGTGTCA CGAATCGACA CGTAGATTTA 12098 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TGTCACGAAC CGACACGTAG ATTTAGGGGA TCGGGTGTCA CGAACCGACA CGTAGATTTA 479 GGGGATCGGG TGTCACGAAC CGACACGTAG ATTTAGGGGA CCGGAGTGTC ACGTTCCGAC 12038 |||||||||| |||||||||| |||||||||| |||||||||| | | ||||| ||| ||||| GGGGATCGGG TGTCACGAAC CGACACGTAG ATTTAGGGGA TCAG-GTGTC ACGAACCGAC 538 ACATAGTAGT AGGGGATCGG AGTGTCACGT ACCGACACAA GAGGATTAAT GAATATGAGG 11978 || ||| | |||||||||| |||||||||| ||||||| | || | | || | || ACGTAGATTT AGGGGATCGG AGTGTCACGT TCCGACAC-- GTAGA-T--T ---TA-G-GG 588 GAGCGGAGTG TCACGTACTG ACACAAGAGA AATAAAGATA ATGA 11934 || | |||| |||||||| | |||||||| | ||| || |||| GATCAGAGTA TCACGTACCG ACACAAGAAG ATTAATGAAT ATGA 632 hqPGS_C09HBa0278J12.1-_SGN-E349726+ (12577 11934) ******************************************************************************** EST sequence 155 +strand 605 n (File: SGN-E347579+) 1 AATAAAGAAA ATAGAAAGAA CAAGAGAGAG AGGAAGAATC GAACGAGAAG GGAGAAACAA 61 AGCTTGGAGA AAAATTTGCT TGCTTGATCA CTAATCTTCG GTGGAGGTAG GTTATGGTTT 121 TCATGCTTTC ATAGTAAACT CTTAATAGAG AATGATATGT ATTGGTAGTA TTGTAAACCC 181 TGCTATATGC TTAATTGTAT GCATGCATGA ACGTGATTAT ATAATTGTGA TTATATTAAG 241 CATGATGAAG TTATTGAATC CCAAATCTTG ATAAAAATCT AATCTCTTAT TAATGATGAT 301 GCCTTGGTAT AGAAGAAGGC TTGATGAATA AAAGTAATGG GATTGATGAT GCCTTGGTAT 361 AGAGAAGGCC TGATGATTTA CAGAATGATA TTAGTGGATC GGAGTGTCAC GTACCGACAC 421 ATGCAGGGGA TCGGGTGTCA CGAACCGACA CGTAGAATTA GGGGATCGGG TGTCACGAAC 481 TGGCACGTAG AATTAGGGGA TCGGGTGTCA CGAACCGGCA CGTAGATTAG GGGATCAGGT 541 GTCACGAACC GACACGTAGA ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGAATTAG 601 GGGAT Predicted gene structure (within gDNA segment 13910 to 8385): Exon 1 12600 12058 ( 543 n); cDNA 72 604 ( 533 n); score: 0.874 MATCH C09HBa0278J12.1- SGN-E347579+ 0.874 543 0.898 C PGS_C09HBa0278J12.1-_SGN-E347579+ (12600 12058) Alignment (genomic DNA sequence = upper lines): AAATTTGCTT GCTTGATCAC GAATCTTCGG TGGAGGTAGG TTATGGTTTC TTTTACGATA 12541 |||||||||| |||||||||| ||||||||| |||||||||| |||||| | ||| | | | AAATTTGCTT GCTTGATCAC TAATCTTCGG TGGAGGTAGG TTATGG--T- TTTCATGCT- 127 TTCGTAATAA ACTCTTAATA GCGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG 12481 ||| || ||| |||||||||| | |||||||| ||||||| || ||||||||| ||||||||| TTCATAGTAA ACTCTTAATA GAGAATGATA TGTATTGGTA GTATTGTAAA CCCTGCTATA 187 TGCTTAATTG TATGCTTGCA TGAATGAAAT TATATAATTG TGATTATA-T AAGCATGATG 12422 |||||||||| ||||| |||| |||| | || |||||||||| |||||||| | |||||||||| TGCTTAATTG TATGCATGCA TGAACGTGAT TATATAATTG TGATTATATT AAGCATGATG 247 AAGTTATTGA ATCCCAATAT CTTG-CAAAA CCCTAATCTC TTTGTTAATG ATGAGGCCTT 12363 |||||||||| ||||||| || |||| |||| |||||||| || |||||| |||| ||||| AAGTTATTGA ATCCCAA-AT CTTGATAAAA ATCTAATCTC -TTATTAATG ATGATGCCTT 305 GGTATAAAAG AAGGCGTGAT GAACTAAAAT AATGAGATTG ATGATGTCTT GGTAAGAAAG 12303 |||||| ||| ||||| |||| ||| ||| | |||| ||||| |||||| ||| ||| | | || GGTATAGAAG AAGGCTTGAT GAATAAAAGT AATGGGATTG ATGATGCCTT GGT-ATAGAG 364 AAGGCTTGAT GAATTGATAG AAGGAGATTA GGGGATCGG- GTGTCAAGAA CAGACACGTA 12244 ||||| |||| | ||| | || || || |||| | ||||||| |||||| | | | ||||| AAGGCCTGAT G-ATTTACAG AATGATATTA GTGGATCGGA GTGTCACGTA CCGACAC--- 420 GATTTAGGGG ATCGGGTGTC ACGAACCGAC ACGTAGATTT AGGGGATCGG GTGTCACGAA 12184 || ||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| -ATGCAGGGG ATCGGGTGTC ACGAACCGAC ACGTAGAATT AGGGGATCGG GTGTCACGAA 479 CCGACACGTA GATTTAGGGG ATCGGGTGTC ACGAACCGAC ACGTAGATTT AGGGGATCGG 12124 | | |||||| || ||||||| |||||||||| |||||||| | ||||||| || |||||||| | CTGGCACGTA GAATTAGGGG ATCGGGTGTC ACGAACCGGC ACGTAGA-TT AGGGGATCAG 538 GTGTCACGAA TCGACACGTA GATTTAGGGG ATCGGGTGTC ACGAACCGAC ACGTAGATTT 12064 |||||||||| ||||||||| || ||||||| |||||||||| |||||||||| ||||||| || GTGTCACGAA CCGACACGTA GAATTAGGGG ATCGGGTGTC ACGAACCGAC ACGTAGAATT 598 AGGGGA 12058 |||||| AGGGGA 604 hqPGS_C09HBa0278J12.1-_SGN-E347579+ (12600 12058) ******************************************************************************** EST sequence 417 +strand 402 n (File: SGN-E357559+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CA Predicted gene structure (within gDNA segment 13738 to 11245): Exon 1 12577 12177 ( 401 n); cDNA 4 401 ( 398 n); score: 0.925 MATCH C09HBa0278J12.1- SGN-E357559+ 0.925 401 0.998 C PGS_C09HBa0278J12.1-_SGN-E357559+ (12577 12177) Alignment (genomic DNA sequence = upper lines): TCTTCGGTGG AGGTAGGTTA TGGTTTCTTT TACGATATTC GTAATAAACT CTTAATAGCG 12518 |||||||||| |||||||||| | |||||| | |||||||||| ||| |||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA 12458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA 123 ATGAAATTAT ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAATATCTTG 12398 ||| || ||| |||||||| | |||||||||| |||||||||| |||||||||| ||| |||||| ATGTAACTAT ATAATTGTTA TTATATAAGC ATGATGAAGT TATTGAATCC CAA-ATCTTG 182 CAAAACCCTA ATCTCTTTGT TAATGATGAG GCCTTGGTAT AAAAGAAGGC GTGATGAACT 12338 |||| |||| |||||||| | ||||||||| ||||||||| ||||||| ||||||||| TAAAAACCTA ATCTCTTT-T TAATGATGAT GCCTTGGTAA GGGAGAAGGC TTGATGAACT 241 AAAATAATGA GATTGATGAT GTCTTGGTAA GAAAGAAGGC TTGATGAATT GATAGAAGGA 12278 ||| |||||| |||||||||| | |||||||| | ||||||| |||||||||| ||||||| || AAAGTAATGA GATTGATGAT GCCTTGGTAA GGGAGAAGGC TTGATGAATT GATAGAATGA 301 GATTAGGGGA TCGGGTGTCA AGAACAGACA CGTAGATTTA GGGGATCGGG TGTCACGAAC 12218 |||||||||| |||||||||| |||| |||| |||||| ||| |||||||||| |||||| ||| GATTAGGGGA TCGGGTGTCA CGAACTGACA CGTAGAATTA GGGGATCGGG TGTCACAAAC 361 CGACACGTAG ATTTAGGGGA TCGGGTGTCA CGAACCGACA C 12177 |||||||||| | ||| |||| || ||||||| |||||| ||| | CGACACGTAG A-TTAAGGGA TCAGGTGTCA CGAACCAACA C 401 hqPGS_C09HBa0278J12.1-_SGN-E357559+ (12577 12177) ******************************************************************************** EST sequence 157 +strand 731 n (File: SGN-E578076+) 1 TTTCTCGGCC AAACGCGTCA TTTTTCTGTA GTTTTTCATA CTTCAATTTC CTTTTCATTT 61 CTTGGTTGAC CGACGAAACC CACCAACTCA CCACCTCATT CCGCCGTGGT CAGCTCGCTT 121 ACTAGGGTAT ACTCTACGTC TTCTTTAACT CATATAAGAC TCTATCTTTT GTATCTATAA 181 CTGAAGAACA AATTTGCAGT TCAACTGTTC GACGCTTTGC CCCAATTAAT CACAACGTAA 241 ATTTCTTCTG CTCTTAACCC TTGTTCAATT TCAGTGAATT ATCTATATCT CTGGTAAATT 301 GGAAGTCGGG AAACCGAAAA AAGTTGAAAT TTTTAGGGTT GTTTTGTTCT CTGTTTTGCT 361 CGTTAGGACG TTTGAATAAG AAAAATAGAA AGAACAAAGA GAAAACAGAA AAAGAAAGAG 421 AAACGAAGAG GATAGCAAGG ATTTTGAGAA GATAACTTGT TGATCGCAAT TCTTCGGTGG 481 AGGTAGGTTA TGGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG AATGATATGT 541 ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA ATGTAACTAT 601 ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAAATCTTGC AAAATCTTAA 661 TCTCTTTGTT CATAATGAGG CCTTGGTATA AAAGAAGGCG TGATGAACTA AAATAATGGG 721 ATTGATGATG C Predicted gene structure (within gDNA segment 18408 to 11589): Exon 1 12687 12317 ( 371 n); cDNA 371 730 ( 360 n); score: 0.877 MATCH C09HBa0278J12.1- SGN-E578076+ 0.877 371 0.508 C PGS_C09HBa0278J12.1-_SGN-E578076+ (12687 12317) Alignment (genomic DNA sequence = upper lines): TTTGAATAAG AAAAAGA-AA AGAACAGAAA GAGAGAGAAG GAGAATTGAT AGAGAGAGAC 12629 |||||||||| ||||| | || ||||| ||| |||| | || |||| | ||| ||||| TTTGAATAAG AAAAATAGAA AGAAC--AAA GAGA-A-AA- CAGAA---AA AGAAAGAGA- 421 GAATGAAGAG GAAAAACAAA AGCTTGGGAA ATTTGCTTGC TTGATCACGA ATCTTCGGTG 12569 || |||||| || | | | ||| ||| | |||| |||||| | | ||||||||| -AACGAAGAG GATAGCAAGG ATTTTGAGAA GATAACTTG- TTGATCGCAA TTCTTCGGTG 479 GAGGTAGGTT ATGGTTTCTT TTACGATATT CGTAATAAAC TCTTAATAGC GAATGATATG 12509 |||||||||| ||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| GAGGTAGGTT ATGGTTTCTC TTACGATATT CGTAGTAAAC TCTTAATAGA GAATGATATG 539 TATTGATAAT ATTGTAAACC CTGCTATGTG CTTAATTGTA TGCTTGCATG AATGAAATTA 12449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| || || TATTGATAAT ATTGTAAACC CTGCTATGTG CTTAATTGTA TGCTTGCATG AATGTAACTA 599 TATAATTGTG ATTATATAAG CATGATGAAG TTATTGAATC CCAATATCTT GCAAAACCCT 12389 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||| | | TATAATTGTG ATTATATAAG CATGATGAAG TTATTGAATC CCAA-ATCTT GCAAAATCTT 658 AATCTCTTTG TTAATGATGA GGCCTTGGTA TAAAAGAAGG CGTGATGAAC TAAAATAATG 12329 |||||||||| || || |||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTTTG TTCATAATGA GGCCTTGGTA TAAAAGAAGG CGTGATGAAC TAAAATAATG 718 AGATTGATGA TG 12317 ||||||||| || GGATTGATGA TG 730 hqPGS_C09HBa0278J12.1-_SGN-E578076+ (12687 12317) ******************************************************************************** EST sequence 431 +strand 725 n (File: SGN-E546548+) 1 GCAAAATAGG ATTCCTCTAC ACGTTTTAGG GGTCGTTTTG GACTATTCTT TCCTTAATTA 61 TAAAGATTGA GGGTTAATAT TAATAGGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT 121 AAGTTAATTA GTGGGTTTTA TTGTCCTCCT TTACACTTAA TTATACTTTT AATTAGGGTA 181 AAAAGAAGGA GGGTTTGAAT AAAACAAAAC AAAAGAAAAG AACAGAAAGA GAGGAGAAAC 241 GAACGAGTAG AGAGAGAGAA ACGAAGAGGA TAGCAAGGAT TTTGAGAAGA TAGCTTGTTG 301 ATTCAATTCT TCGGTGGAGG TAGGTTATGG TTTATGTTAC GATATTCGTA GTGAACTCTT 361 AATAGTGAAT ATTATGTGTT GATAGTATTG TAAACCCTGC TATGTGCTTA AGTTGTATGC 421 TTGCATGATT ATGATTATGA AATTGCGATG AATTAACAAA GCATGATGAA GCAATTGAAT 481 CCCAAATCTT GAAAGAACCC TAATTCGCTT GATATATTAT ATAATGAGAA TGATGATGCC 541 TTAGTATGAA AGAAGGCTTG ATAAATTATA TAATGAGAAT GATGATGCCT TAGTGTAAAA 601 GAAGGCTTGA TGGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA GAATGAATAT 661 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG 721 GTACC Predicted gene structure (within gDNA segment 14253 to 8878): Exon 1 12872 12383 ( 490 n); cDNA 9 506 ( 498 n); score: 0.763 Intron 1 12382 12350 ( 33 n); Pd: 0.000 (s: 0.85), Pa: 0.378 (s: 0.80) Exon 2 12349 12212 ( 138 n); cDNA 507 643 ( 137 n); score: 0.688 MATCH C09HBa0278J12.1- SGN-E546548+ 0.747 628 0.866 C PGS_C09HBa0278J12.1-_SGN-E546548+ (12872 12383,12349 12212) Alignment (genomic DNA sequence = upper lines): GGATTTCTGT TAAGTAATTT AAGGGGCGTT TTGGACTATT CCGGCTTTAA TTATAAAGTT 12813 ||||| || || ||| | ||| |||| |||||||||| | | |||| |||||||| | GGATTCCT-C TACACGTTTT AGGGGTCGTT TTGGACTATT CTTTCCTTAA TTATAAAGAT 67 AGTGGGTTTA TATTAATAAG TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 12753 | ||||| | |||||||| | |||||||||| |||||||||| |||||||||| ||| ||| || TGAGGGTTAA TATTAATAGG TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTAAGTTAA 127 TTAGTGGGTT ATTATTGCCA TCTTTTATTC TTAATTATA- TGCTAATTAG GGT-AAAAGA 12695 |||||||||| |||||| | || |||| | ||||||||| | ||||||| ||| |||||| TTAGTGGGTT -TTATTGTCC TCCTTTACAC TTAATTATAC TTTTAATTAG GGTAAAAAGA 186 AAGAGGGTTT GAATAAGA-A AAAGAAAAGA ACAGAA-AGA GAGAGAAG-G AGA--ATTGA 12640 | |||||||| |||||| | | ||| |||||| | |||| ||| ||||| | | | | | || AGGAGGGTTT GAATAAAACA AAACAAAAGA AAAGAACAGA AAGAGAGGAG AAACGAACGA 246 -TAGAGAGAG ACGAATGAAG AGGAAAAACA AAAGCTTGGG AAATTTGCTT GCTTGATCAC 12581 ||||||||| | || |||| |||| | | | ||| | || | |||| | ||||| | GTAGAGAGAG AGAAACGAAG AGGATAGCAA GGATTTTGAG AAGATAGCTT G-TTGAT-TC 304 GAATCTTCGG TGGAGGTAGG TTATGGTTTC TTTTACGATA TTCGTAATAA ACTCTTAATA 12521 | ||||||| |||||||||| ||||||||| | |||||||| |||||| | | |||||||||| AATTCTTCGG TGGAGGTAGG TTATGGTTTA TGTTACGATA TTCGTAGTGA ACTCTTAATA 364 GCGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAA-TT GTATGCTTGC 12462 | |||| || ||| |||||| ||||||||| |||||||||| ||||||| || |||||||||| GTGAATATTA TGTGTTGATA GTATTGTAAA CCCTGCTATG TGCTTAAGTT GTATGCTTGC 424 ATGAATGAAA TTATATAATT --G-TG-ATT ATATAAGCAT GATGAAGTTA TTGAATCCCA 12406 |||| | | |||| |||| | || ||| | |||||| ||||||| | |||||||||| ATGATTATGA TTATGAAATT GCGATGAATT AACAAAGCAT GATGAAGCAA TTGAATCCCA 484 ATATCTTGCA A-AACCCTAA TCTCTTTGTT AATGATGAGG CCTTGGTATA AAAGAAGGCG 12347 | |||||| | | |||||||| | || || A-ATCTTGAA AGAACCCTAA T-TC...... .......... .......... .......GCT 509 TGATGAACTA AAATAATGAG ATTGATGATG TCTTGGTAAG AAAGAAGGCT TGATGAATTG 12287 |||| | | | |||||||| | |||||||| ||| ||| | |||||||||| |||| |||| TGAT-ATATT ATATAATGAG AATGATGATG CCTTAGTATG AAAGAAGGCT TGATAAATT- 567 ATAGAAGGAG ATTAGGGGAT -CGGGTGT-C AAGAACAGAC ACGTAGATTT AGGGGATCGG 12229 ||| || ||| | | | ||| | || || | || | | | || |||||||||| ATATAATGAG AAT-GATGAT GCCTTAGTGT AAAAGAAGGC TTGATGGATT AGGGGATCGG 626 GTGTCACGAA CCGACAC 12212 ||| |||| ||| || GTGCCACGTT CCGGTAC 643 hqPGS_C09HBa0278J12.1-_SGN-E546548+ (12872 12383) ******************************************************************************** EST sequence 439 +strand 660 n (File: SGN-E349296+) 1 GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 61 CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 121 GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 181 TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 241 CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTCCTC AATTGTTTTA 301 AGGGACGTTT TTGACTATTC CTGCTTTAAT TATAAAGTTA GTGGGTTAAT GTTAATAAGT 361 CTAATTACTT GGGGGTTAAA AGAGGTAACC TTAAGTTAAT TAGTGGGTTA TTATTGCCAT 421 ATTTTATTCT TAATTATATA CTAATTAGGG TAAAAGAAAG AGGGTTTGAA TAAAGAAAAT 481 AGAAAGAACA AGAGAAAGAG AGAGAAAGTC GAACGAGAAA GAGGATCGAA CGAGAGGAAA 541 AAACACAAAG CTTGGGAAAT CACTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG 601 GTTTCTCTTA CGATATTCGT AGTAAGCTCT TAATAGCGAA TAATATGTAT TGATAATATT Predicted gene structure (within gDNA segment 16910 to 11400): Exon 1 12920 12496 ( 425 n); cDNA 231 660 ( 430 n); score: 0.847 MATCH C09HBa0278J12.1- SGN-E349296+ 0.847 425 0.644 C PGS_C09HBa0278J12.1-_SGN-E349296+ (12920 12496) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAATTCAC A--CTGGGTC GGATTTCTGT 12863 |||||||||| | |||| | | ||||||||| ||||| || | | ||| ||| ||| ||| | GTCGCAGGCA CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTC-CT 289 TAAGTAATTT AAGGGGCGTT TTGGACTATT CCGGCTTTAA TTATAAAGTT AGTGGGTTTA 12803 || | ||| ||||| |||| || ||||||| || ||||||| |||||||||| |||||||| | CAATTGTTTT AAGGGACGTT TTTGACTATT CCTGCTTTAA TTATAAAGTT AGTGGGTTAA 349 TATTAATAAG TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA TTAGTGGGTT 12743 | |||||||| |||||||||| |||||||||| |||||||||| ||| ||| || |||||||||| TGTTAATAAG TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTAAGTTAA TTAGTGGGTT 409 ATTATTGCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAA GAGGGTTTGA 12683 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATTATTGCCA TATTTTATTC TTAATTATAT ACTAATTAGG GTAAAAGAAA GAGGGTTTGA 469 AT-AAGAAAA -AG-AA-AAG AACAGAAAGA GAGAGAAGGA GAATTGATAG AGAGAGACGA 12627 || ||||||| || || || || ||||||| ||||||| | | || | |||| ||| ATAAAGAAAA TAGAAAGAAC AAGAGAAAGA GAGAGAAAGT CGAACGAGAA AGAGGATCGA 529 ATGAAGAGG- AAAAACA-AA AGCTTGGGAA ATTTGCTTGC TTGATCACGA ATCTTCGGTG 12569 | | ||||| ||||||| || |||||||||| | | ||||| |||||||||| |||||||||| ACG-AGAGGA AAAAACACAA AGCTTGGGAA A-TCACTTGC TTGATCACGA ATCTTCGGTG 587 GAGGTAGGTT ATGGTTTCTT TTACGATATT CGTAATAAAC TCTTAATAGC GAATGATATG 12509 |||||||||| ||||||||| |||||||||| |||| ||| | |||||||||| |||| ||||| GAGGTAGGTT ATGGTTTCTC TTACGATATT CGTAGTAAGC TCTTAATAGC GAATAATATG 647 TATTGATAAT ATT 12496 |||||||||| ||| TATTGATAAT ATT 660 hqPGS_C09HBa0278J12.1-_SGN-E349296+ (12920 12496) ******************************************************************************** EST sequence 19 -strand 726 n (File: SGN-E550322-) 1 GTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGATCTG 721 GTGCGA Predicted gene structure (within gDNA segment 18556 to 11913): Exon 1 12920 12630 ( 291 n); cDNA 437 726 ( 290 n); score: 0.902 PPA cDNA 19 2 MATCH C09HBa0278J12.1- SGN-E550322- 0.902 291 0.401 C PGS_C09HBa0278J12.1-_SGN-E550322- (12920 12630) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 495 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 555 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 615 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 674 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GATAGAGAGA GA 12630 |||||||||| |||||||||| |||||||||| ||||||||| ||| | | || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GATCTGGTGC GA 726 hqPGS_C09HBa0278J12.1-_SGN-E550322- (12920 12630) ******************************************************************************** EST sequence 174 +strand 679 n (File: SGN-E550127+) 1 ATGAGTAATT TTTTATATTT TATGTCATAA TTTTTTCATT AATTCATGGT TGTGCAAATC 61 TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT 121 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 181 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 241 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 301 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 361 TGAGTCTCTG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 421 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 481 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 541 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 601 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTTGATAAG AAAAAGAAAA GGACAGAAAG 661 AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 18166 to 11993): Exon 1 12920 12639 ( 282 n); cDNA 399 679 ( 281 n); score: 0.906 MATCH C09HBa0278J12.1- SGN-E550127+ 0.906 282 0.415 C PGS_C09HBa0278J12.1-_SGN-E550127+ (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 457 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 517 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 577 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||| | TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTTGA 636 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| ||||| |||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGGACAG AAAGAGAGAG AAGGAGAATC GAT 679 hqPGS_C09HBa0278J12.1-_SGN-E550127+ (12920 12639) ******************************************************************************** EST sequence 178 +strand 673 n (File: SGN-E550140+) 1 GTAATTTTTT ATATTTTTGG TCTAATTTTT TGTTAATTCA TGGTTGATAA CATCTTTGTT 61 TCTAATAGTG TTATAAATCG TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT 121 AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG 181 ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA 241 CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG 301 GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC 361 TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT 421 TGCGTAATCC CAGTCTGGGT CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT 481 CCTACTTTAA TTATAAAGTT AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA 541 AAGAGGTAAC CTTNGAGTAA TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG 601 CTAATTAGGG TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG 661 AAGGAGAATC GAT Predicted gene structure (within gDNA segment 18106 to 11993): Exon 1 12920 12639 ( 282 n); cDNA 393 673 ( 281 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E550140+ 0.904 282 0.419 C PGS_C09HBa0278J12.1-_SGN-E550140+ (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 451 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 511 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TT-GAGTAAA TTAGTGGGTT 12743 ||||||||| |||||||| | |||||||||| |||||||||| || |||| || |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTNGAGT-AA TTAGTGGGTT 570 ATTATTGCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAA GAGGGTTTGA 12683 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTATT-CCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA 629 ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT TGAT 12639 |||||||||| |||||||||| |||||||||| |||||||||| ||| ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT 673 hqPGS_C09HBa0278J12.1-_SGN-E550140+ (12920 12639) ******************************************************************************** EST sequence 221 +strand 681 n (File: SGN-E389553+) 1 AATGAGTAAT TTTTTATATT TTATTCCATA ATTTTTTCAT TAATTCATGG TTGAGAAAAT 61 CTTTGTTTCT AATAGTGTTA TAAATCGTAA AATAATAATA ATATTTAAGT AGGAACGAAC 121 ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG GAAAAACAGG 181 TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG AGGAGTCTCG 241 TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT GAACTTCGTA 301 ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC TTTGGTGGAA 361 ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA CGACGGGCCA 421 TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA GGGACGTTTT 481 GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC TAATTACCTG 541 GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT TTTATTCTTA 601 ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA AAGAACAGAA 661 AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 18186 to 11993): Exon 1 12920 12639 ( 282 n); cDNA 401 681 ( 281 n); score: 0.917 MATCH C09HBa0278J12.1- SGN-E389553+ 0.917 282 0.414 C PGS_C09HBa0278J12.1-_SGN-E389553+ (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 459 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 519 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 579 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 638 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 681 hqPGS_C09HBa0278J12.1-_SGN-E389553+ (12920 12639) ******************************************************************************** EST sequence 16 -strand 729 n (File: SGN-E550212-) 1 GCCCCCCCCC GAGTTTTTTT TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT 61 TTTTATATTT TATGGCATAA TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA 121 ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG 181 ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG 241 AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT 301 TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC 361 GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG 421 AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG 481 TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA 541 CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA 601 GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA 661 TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG 721 AGAATCGAT Predicted gene structure (within gDNA segment 18676 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 449 729 ( 281 n); score: 0.917 PPA cDNA 31 14 MATCH C09HBa0278J12.1- SGN-E550212- 0.917 282 0.387 C PGS_C09HBa0278J12.1-_SGN-E550212- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 507 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 567 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 627 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 686 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 729 hqPGS_C09HBa0278J12.1-_SGN-E550212- (12920 12639) ******************************************************************************** EST sequence 17 -strand 710 n (File: SGN-E550065-) 1 TTTTTTTCTT ATGAATCAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TCATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 661 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 18486 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 430 710 ( 281 n); score: 0.917 MATCH C09HBa0278J12.1- SGN-E550065- 0.917 282 0.397 C PGS_C09HBa0278J12.1-_SGN-E550065- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 488 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 548 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 608 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 667 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 710 hqPGS_C09HBa0278J12.1-_SGN-E550065- (12920 12639) ******************************************************************************** EST sequence 20 -strand 732 n (File: SGN-E550201-) 1 GGCCCCCCCT CGAGTTTTTT TTTTTTTTTT TTATGAATTA GCTCAATGAA AAATGAGTAA 61 ATTTTTTATA TTTTATGGCA TAATTTTTTC ATTAATTCAT GGTNGAGAAA ATCTTTGTTT 121 CTAATAGTGT TATAAATCGT AAAATAATAA TAATATTTAA GTAGGAAGAA CATAAATGTA 181 ACGACCTGTT TAGTCGTTTT GAGTAGCAGA TTTTATTTTT GGAAAAACAG GTTGAGACGA 241 CGGAACCCAC GACGGACCGT CATGAGCACG ATGGACCGTC GAGGAGTCTC GTTTCAAAAC 301 ACTTAGAAAT TCTGAAATTG GGTACTAAAA ATCGACTCTC TGAACTTCGT AACGGAATGG 361 CACGACGGAC CGTCACGGGC GTGACGGACC GTCACAGACT CTTTGGTGGA AATTGAGTCT 421 CTGAACCTTG CGACGACCTG CAGGACGGAC CGTCGCAGGC ACGACGGGCC ATCACAGGTT 481 GCGTAATCCC AGTCTGGGTC GGATTTCTTT ACACGTTTTA AGGGACGTTT TGGACTATTC 541 CTACTTTAAT TATAAAGTTA GTGGGTTTAT GTTAATAAGT CTAATTACCT GGGGGTTAAA 601 AGAGGTAACC TTGAGTAAAT TAGTGGGTTA TTATTCCATC TTTTATTCTT AATTATATGC 661 TAATTAGGGT AAAAGAAGGA GGGTTTGAAT AAGAAAAAGA AAAGAACAGA AAGAGAGAGA 721 AGGAGAATCG AT Predicted gene structure (within gDNA segment 18706 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 452 732 ( 281 n); score: 0.917 PPA cDNA 34 15 MATCH C09HBa0278J12.1- SGN-E550201- 0.917 282 0.385 C PGS_C09HBa0278J12.1-_SGN-E550201- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 510 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 570 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 630 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 689 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 732 hqPGS_C09HBa0278J12.1-_SGN-E550201- (12920 12639) ******************************************************************************** EST sequence 21 -strand 709 n (File: SGN-E550207-) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT GNAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA TTAGGGTAAA AGAAGGAGGG 661 TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 18476 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 429 709 ( 281 n); score: 0.917 PPA cDNA 11 1 MATCH C09HBa0278J12.1- SGN-E550207- 0.917 282 0.398 C PGS_C09HBa0278J12.1-_SGN-E550207- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 487 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 547 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 607 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 666 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 709 hqPGS_C09HBa0278J12.1-_SGN-E550207- (12920 12639) ******************************************************************************** EST sequence 23 -strand 715 n (File: SGN-E550335-) 1 TTTTTTTTTT TTTTTTATGA ATTAGCTCAA TGAAAAATGA GTAAATTTTT TATATTTTAT 61 GGCATAATTT TTTCATTAAT TCATGGTNGA GAAAATCTTT GTTTCTAATA GTGTTATAAA 121 TCGTAAAATA ATAATAATAT TTAAGTAGGA AGAACATAAA TGTAACGACC TGTTTAGTCG 181 TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA 241 CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA 301 ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC 361 GGGCGTGACG GACCGTCACA GATTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA 421 CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG 481 GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT TAATTATAAA 541 GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT AACCTTGAGT 601 AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA 661 AGGAGGGTTG AATAAGAAAA AGAAAAGAAC AGAAAGAGAG AGAAGGAGAA TCGAT Predicted gene structure (within gDNA segment 18546 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 436 715 ( 280 n); score: 0.913 PPA cDNA 18 1 MATCH C09HBa0278J12.1- SGN-E550335- 0.913 282 0.394 C PGS_C09HBa0278J12.1-_SGN-E550335- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 494 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 554 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 614 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||| ||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGG-TTGAA 672 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 715 hqPGS_C09HBa0278J12.1-_SGN-E550335- (12920 12639) ******************************************************************************** EST sequence 40 -strand 714 n (File: SGN-E390013-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTNGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 18526 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 434 714 ( 281 n); score: 0.917 PPA cDNA 16 1 MATCH C09HBa0278J12.1- SGN-E390013- 0.917 282 0.395 C PGS_C09HBa0278J12.1-_SGN-E390013- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 492 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 552 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 612 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 671 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 714 hqPGS_C09HBa0278J12.1-_SGN-E390013- (12920 12639) ******************************************************************************** EST sequence 41 -strand 720 n (File: SGN-E389834-) 1 CCCTCGATTT TTTTTTTTTT TTCACGAATA GCTCAATGAA GAACGAGTAA ATTTTTATAT 61 TTCATGGCAT ATTTTTTCAT TAATTCATGG TCGAGAAAAT CTTCGTTTCT AATAGTGTTA 121 TAAATCGTAA AATAATAATG ATATTTAAGT AGGACGATCA TAAATGTAAC GTCCTGTTTA 181 GTCGTTCTGA GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGTCGACG TAACCCACGA 241 CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC 301 TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG 361 TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG 421 ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG 481 TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA 541 TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT 601 GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA 661 AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 18586 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 440 720 ( 281 n); score: 0.917 PPA cDNA 22 7 MATCH C09HBa0278J12.1- SGN-E389834- 0.917 282 0.392 C PGS_C09HBa0278J12.1-_SGN-E389834- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 498 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 558 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 618 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 677 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 720 hqPGS_C09HBa0278J12.1-_SGN-E389834- (12920 12639) ******************************************************************************** EST sequence 43 -strand 717 n (File: SGN-E550484-) 1 TTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGAT Predicted gene structure (within gDNA segment 18556 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 437 717 ( 281 n); score: 0.917 PPA cDNA 19 1 MATCH C09HBa0278J12.1- SGN-E550484- 0.917 282 0.393 C PGS_C09HBa0278J12.1-_SGN-E550484- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 495 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 555 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 615 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 674 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 717 hqPGS_C09HBa0278J12.1-_SGN-E550484- (12920 12639) ******************************************************************************** EST sequence 44 -strand 713 n (File: SGN-E550211-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 18526 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 434 713 ( 280 n); score: 0.913 PPA cDNA 16 1 MATCH C09HBa0278J12.1- SGN-E550211- 0.913 282 0.396 C PGS_C09HBa0278J12.1-_SGN-E550211- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 492 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 552 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 612 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||| ||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGG-TTGAA 670 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 713 hqPGS_C09HBa0278J12.1-_SGN-E550211- (12920 12639) ******************************************************************************** EST sequence 45 -strand 713 n (File: SGN-E550464-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATCTTATGG 61 CATAATTTTT CATTAATTCA TGGTAGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT ANCGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 18516 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 433 713 ( 281 n); score: 0.917 PPA cDNA 16 1 MATCH C09HBa0278J12.1- SGN-E550464- 0.917 282 0.396 C PGS_C09HBa0278J12.1-_SGN-E550464- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 491 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 551 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 611 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 670 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 713 hqPGS_C09HBa0278J12.1-_SGN-E550464- (12920 12639) ******************************************************************************** EST sequence 46 -strand 713 n (File: SGN-E549941-) 1 TTTTTTTTTT TTTATGAATT AGCTCAATGA AAAATGAGTA AATTTTTTAT ATTTTGATGG 61 CATAATTTTT CATTAATCAT NGGTCGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT AACGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATATTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 18516 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 433 713 ( 281 n); score: 0.917 PPA cDNA 15 1 MATCH C09HBa0278J12.1- SGN-E549941- 0.917 282 0.396 C PGS_C09HBa0278J12.1-_SGN-E549941- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 491 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 551 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 611 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 670 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 713 hqPGS_C09HBa0278J12.1-_SGN-E549941- (12920 12639) ******************************************************************************** EST sequence 47 -strand 714 n (File: SGN-E550025-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 18526 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 434 714 ( 281 n); score: 0.917 PPA cDNA 16 1 MATCH C09HBa0278J12.1- SGN-E550025- 0.917 282 0.395 C PGS_C09HBa0278J12.1-_SGN-E550025- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 492 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 552 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 612 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 671 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 714 hqPGS_C09HBa0278J12.1-_SGN-E550025- (12920 12639) ******************************************************************************** EST sequence 89 -strand 711 n (File: SGN-E396039-) 1 TTTTTTTTTT TGAATTAGCT CCAAGAAAAA ATGAGTAAAT TTTTTTTATT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GTGGAGAAAA TCTTTGTTTT TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 18496 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 431 711 ( 281 n); score: 0.917 PPA cDNA 50 40 MATCH C09HBa0278J12.1- SGN-E396039- 0.917 282 0.397 C PGS_C09HBa0278J12.1-_SGN-E396039- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 489 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 549 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 609 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 668 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 711 hqPGS_C09HBa0278J12.1-_SGN-E396039- (12920 12639) ******************************************************************************** EST sequence 90 -strand 618 n (File: SGN-E396054-) 1 TTGTTTCTAA TAGTGTTATA AATCGTAAAA TAATAATAAT ATTTAAGTAG GAAGAACATA 61 AATGTAACGA CCTGTTTAGT CGTTTTGAGT AGCAGATTTT ATTTTTGGAA AAACAGGTTG 121 AGACGACGGA ACCCACGACG GACCGTCATG AGCACGATGG ACCGTCGAGG AGTCTCGTTT 181 CAAAACACTT AGAAATTCTG AAATTGGGTA CTAAAAATCG ACTCTCTGAA CTTCGTAACG 241 GAATGGCACG ACGGACCGTC ACGGGCGTGA CGGACCGTCA CAGACTCTTT GGTGGAAATT 301 GAGTCTCTGA ACCTTGCGAC GACCTGCAGG ACGGACCGTC GCAGGCACGA CGGGCCATCA 361 CAGGTTGCGT AATCCCAGTC TGGGTCGGAT TTCTTTACAC GTTTTAAGGG ACGTTTTGGA 421 CTATTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 481 GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 541 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 601 GAGAGAAGGA GAATCGAT Predicted gene structure (within gDNA segment 17566 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 338 618 ( 281 n); score: 0.917 MATCH C09HBa0278J12.1- SGN-E396054- 0.917 282 0.456 C PGS_C09HBa0278J12.1-_SGN-E396054- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 396 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 456 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 516 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 575 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 618 hqPGS_C09HBa0278J12.1-_SGN-E396054- (12920 12639) ******************************************************************************** EST sequence 91 -strand 711 n (File: SGN-E396056-) 1 TTTTTTTTTT ATGAATTAGC TCAAAGAAAA AATGAGTAAA TTTTTATTAT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GGTGAGAAAA TTTTTGTTTC TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 18496 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 431 711 ( 281 n); score: 0.917 PPA cDNA 12 1 MATCH C09HBa0278J12.1- SGN-E396056- 0.917 282 0.397 C PGS_C09HBa0278J12.1-_SGN-E396056- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 489 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 549 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 609 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 668 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 711 hqPGS_C09HBa0278J12.1-_SGN-E396056- (12920 12639) ******************************************************************************** EST sequence 92 -strand 610 n (File: SGN-E396058-) 1 AATAGTGTTA TAAATCGTAA AATAATAATA ATAGTTAACT ATGAAGAACC TAAATGTAAC 61 GACCTGTTTA GTCGTTGTGA GTAGCAGATT TTATTTTTGG AAACACAGGT TGAGACGACG 121 GAACCCACGA CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC 181 TTAGAAATTC TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA 241 CGACGGACCG TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT 301 GAACCTTGCG ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC 361 GTAATCCCAG TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT 421 ACTTTAATTA TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG 481 AGGTAACCTT GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA 541 ATTAGGGTAA AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG 601 GAGAATCGAT Predicted gene structure (within gDNA segment 17486 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 330 610 ( 281 n); score: 0.917 MATCH C09HBa0278J12.1- SGN-E396058- 0.917 282 0.462 C PGS_C09HBa0278J12.1-_SGN-E396058- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 388 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 448 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 508 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 567 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 610 hqPGS_C09HBa0278J12.1-_SGN-E396058- (12920 12639) ******************************************************************************** EST sequence 95 -strand 454 n (File: SGN-E396070-) 1 TCGAGGAGTC TAGTTTCAAA ACAATTAGAA ACTCCCCCCC CCGGTACTAA AAATCGACTC 61 TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 121 CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC TGCAGGACGG ACCGTCGCAG 181 GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT TTACACGTTT 241 TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT TAGTGGGTTT ATGTTAATAA 301 GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA ATTAGTGGGT TATTATTCCA 361 TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA ATAAGAAAAA 421 GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 15926 to 12003): Exon 1 12920 12639 ( 282 n); cDNA 174 454 ( 281 n); score: 0.917 MATCH C09HBa0278J12.1- SGN-E396070- 0.917 282 0.621 C PGS_C09HBa0278J12.1-_SGN-E396070- (12920 12639) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 232 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 292 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 352 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 411 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GAT 12639 |||||||||| |||||||||| |||||||||| ||||||||| ||| TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT 454 hqPGS_C09HBa0278J12.1-_SGN-E396070- (12920 12639) ******************************************************************************** EST sequence 53 -strand 558 n (File: SGN-E231589-) 1 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 61 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 121 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 181 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 241 TGAGTCTATG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 301 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 361 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 421 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 481 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG 541 AGAGAGAAGG AGAATCGA Predicted gene structure (within gDNA segment 16976 to 12013): Exon 1 12920 12640 ( 281 n); cDNA 279 558 ( 280 n); score: 0.916 MATCH C09HBa0278J12.1- SGN-E231589- 0.916 281 0.504 C PGS_C09HBa0278J12.1-_SGN-E231589- (12920 12640) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 337 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 397 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 457 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 516 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GA 12640 |||||||||| |||||||||| |||||||||| ||||||||| || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA 558 hqPGS_C09HBa0278J12.1-_SGN-E231589- (12920 12640) ******************************************************************************** EST sequence 83 -strand 649 n (File: SGN-E374999-) 1 ATTTTTTCAT TAATTCAGGG TGAAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 61 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTGGA 121 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 181 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 241 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 301 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 361 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 421 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 481 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 541 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 601 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGA Predicted gene structure (within gDNA segment 17886 to 12013): Exon 1 12920 12640 ( 281 n); cDNA 370 649 ( 280 n); score: 0.916 MATCH C09HBa0278J12.1- SGN-E374999- 0.916 281 0.433 C PGS_C09HBa0278J12.1-_SGN-E374999- (12920 12640) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 428 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 488 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 548 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 607 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GA 12640 |||||||||| |||||||||| |||||||||| ||||||||| || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA 649 hqPGS_C09HBa0278J12.1-_SGN-E374999- (12920 12640) ******************************************************************************** EST sequence 98 -strand 472 n (File: SGN-E236652-) 1 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 61 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 121 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 181 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 241 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 301 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 361 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 421 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA Predicted gene structure (within gDNA segment 16116 to 12013): Exon 1 12920 12640 ( 281 n); cDNA 193 472 ( 280 n); score: 0.916 MATCH C09HBa0278J12.1- SGN-E236652- 0.916 281 0.595 C PGS_C09HBa0278J12.1-_SGN-E236652- (12920 12640) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 251 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 311 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 371 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 430 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GA 12640 |||||||||| |||||||||| |||||||||| ||||||||| || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA 472 hqPGS_C09HBa0278J12.1-_SGN-E236652- (12920 12640) ******************************************************************************** EST sequence 106 -strand 690 n (File: SGN-E377133-) 1 CTCAATGAAA AATGAGTAAA TTTTTTATAT TTTATGGCAT AATTTTTTCA TTAATTCATG 61 GTTGAGAAAA TCTTTGTTTC TAATAGTGTT ATAAATCGTA AAATAATAAT AATATTTAAG 121 TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG 181 GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG 241 AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT 301 GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC 361 TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 421 CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA 481 GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 541 TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT 601 TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA 661 AAGAACAGAA AGAGAGAGAA GGAGAATCGA Predicted gene structure (within gDNA segment 18296 to 12013): Exon 1 12920 12640 ( 281 n); cDNA 411 690 ( 280 n); score: 0.916 MATCH C09HBa0278J12.1- SGN-E377133- 0.916 281 0.407 C PGS_C09HBa0278J12.1-_SGN-E377133- (12920 12640) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 469 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 529 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 589 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 648 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GA 12640 |||||||||| |||||||||| |||||||||| ||||||||| || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA 690 hqPGS_C09HBa0278J12.1-_SGN-E377133- (12920 12640) ******************************************************************************** EST sequence 148 -strand 545 n (File: SGN-E241959-) 1 TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC 61 CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG 121 AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC 181 GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 241 CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA 301 TCCCAGTCTG GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT 361 TAATTATAAA GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT 421 AACCTTGAGT AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA 481 GGGTAAAAGA AGGAGGGTTT GAATAAGAAA AAGAAAAGAA CAGAAAGAGA GAGAAGGAGA 541 ATCGA Predicted gene structure (within gDNA segment 16846 to 12013): Exon 1 12920 12640 ( 281 n); cDNA 266 545 ( 280 n); score: 0.916 MATCH C09HBa0278J12.1- SGN-E241959- 0.916 281 0.516 C PGS_C09HBa0278J12.1-_SGN-E241959- (12920 12640) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 324 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 384 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 444 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG AGGGTTTGAA 503 TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATT GA 12640 |||||||||| |||||||||| |||||||||| ||||||||| || TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA 545 hqPGS_C09HBa0278J12.1-_SGN-E241959- (12920 12640) ******************************************************************************** EST sequence 313 +strand 674 n (File: SGN-E396057+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAAAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAAAAAGAAG 661 GTTTGAATAA AAAA Predicted gene structure (within gDNA segment 18476 to 11867): Exon 1 12920 12675 ( 246 n); cDNA 430 674 ( 245 n); score: 0.900 PPA cDNA 12 1 MATCH C09HBa0278J12.1- SGN-E396057+ 0.900 246 0.365 C PGS_C09HBa0278J12.1-_SGN-E396057+ (12920 12675) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 488 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 548 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 608 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG AGGGTTTGAA 12682 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| |||| | |||||||| TTATT-CCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAAAAAG AAGGTTTGAA 667 TAAGAAA 12675 ||| ||| TAAAAAA 674 hqPGS_C09HBa0278J12.1-_SGN-E396057+ (12920 12675) ******************************************************************************** EST sequence 389 +strand 548 n (File: SGN-E356257+) 1 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 61 AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 121 ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 181 AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTCCTTACAC GTTTTAAGGG ACGTTTTTGG 241 ACTATTCTTT CCTTAATTAT AGATTTCGTG GGTTTATATT AATAACTCAA ATTCTTGGGG 301 TTAAAAGAGG TAACCCTAAG TTAATTAGTG GGGTATTATT GCCATCTTTT ATTCTTAATT 361 ATATGTTAAT TTGGGGTAAA AGAAAGAGGG TTTTGAAACG AGACCCTGCG ATGGTCCGTC 421 GTGCCCATGA CGGTCCGTCG TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAAATAAAGT 481 CTGCTGCTCA AAACGACTAA ACGGGTCGTT ACATTATTTG ACTCTATCAC TTTAATTTTC 541 TAGTTAAC Predicted gene structure (within gDNA segment 16081 to 10525): Exon 1 12920 12685 ( 236 n); cDNA 157 393 ( 237 n); score: 0.809 MATCH C09HBa0278J12.1- SGN-E356257+ 0.809 236 0.431 C PGS_C09HBa0278J12.1-_SGN-E356257+ (12920 12685) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAATTCAC A--CTGGGTC GGATTTCTGT 12863 ||| ||| || |||||||||| ||||||| | || || || | | | | || ||||||| | GTCACAGTCA CGACGGCCCG TCACAGGTTG CGCAAATCCC AGGCAGAATC GGATTTC-CT 215 TAAGTAATTT AAGGGGCG-T TTTGGACTAT TCCGGCTTTA ATTATAAAGT TAGTGGGTTT 12804 || ||| ||||| || | |||||||||| || | ||| |||||| | | | |||||||| TACACGTTTT AAGGGACGTT TTTGGACTAT TCTTTCCTTA ATTATAGATT TCGTGGGTTT 275 ATATTAATAA GTCTAATTAC TTGGGGGTTA AAAGAGGTAA CCTTGAGTAA ATTAGTGGGT 12744 |||||||||| || |||| | || ||||||| |||||||||| || | ||| | ||||||||| ATATTAATAA CTCAAATT-C TT-GGGGTTA AAAGAGGTAA CCCTAAGTTA ATTAGTGGGG 333 TATTATTGCC ATCTTTTATT CTTAATTATA TGCTAA-TTA GGGTAAAAGA AAGAGGGTTT 12685 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| |||||||||| TATTATTGCC ATCTTTTATT CTTAATTATA TGTTAATTTG GGGTAAAAGA AAGAGGGTTT 393 hqPGS_C09HBa0278J12.1-_SGN-E356257+ (12920 12685) ******************************************************************************** EST sequence 349 +strand 658 n (File: SGN-E377132+) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAA TATATGCTAA TTAGGGTAAA AGAAGGAA Predicted gene structure (within gDNA segment 18466 to 12044): Exon 1 12920 12691 ( 230 n); cDNA 429 657 ( 229 n); score: 0.898 PPA cDNA 11 1 MATCH C09HBa0278J12.1- SGN-E377132+ 0.898 230 0.350 C PGS_C09HBa0278J12.1-_SGN-E377132+ (12920 12691) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 487 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 547 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 607 TTATTGCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAAG A 12691 ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | | TTATT-CCAT CTTTTATTCT TAAATATATG CTAATTAGGG TAAAAGAAGG A 657 hqPGS_C09HBa0278J12.1-_SGN-E377132+ (12920 12691) ******************************************************************************** EST sequence 311 +strand 647 n (File: SGN-E396055+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGGTTTATG TTAATAAGTC TAATTACCCT GGGGGTTAAA AAAAGGAACC CTTGAGTAAA 601 TTAGTGGGTT ATTATTTCCA TCTTTTTATT CTTAATTATA TGCTAAT Predicted gene structure (within gDNA segment 18476 to 12097): Exon 1 12920 12707 ( 214 n); cDNA 430 647 ( 218 n); score: 0.839 PPA cDNA 12 1 MATCH C09HBa0278J12.1- SGN-E396055+ 0.839 214 0.331 C PGS_C09HBa0278J12.1-_SGN-E396055+ (12920 12707) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 488 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGG-TTTA 12803 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| ||||| |||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGGTTTA 548 TATTAATAAG TCTAATTAC- TTGGGGGTT- AAAAGAGGTA ACCTTGAGTA AATTAGTGGG 12745 | |||||||| ||||||||| |||||||| |||| ||| | ||||||||| |||||||||| TGTTAATAAG TCTAATTACC CTGGGGGTTA AAAAAAGGAA CCCTTGAGTA AATTAGTGGG 608 TTATTATTGC CATC-TTTTA TTCTTAATTA TATGCTAAT 12707 |||||||| | |||| ||||| |||||||||| ||||||||| TTATTATTTC CATCTTTTTA TTCTTAATTA TATGCTAAT 647 hqPGS_C09HBa0278J12.1-_SGN-E396055+ (12920 12707) ******************************************************************************** EST sequence 310 +strand 640 n (File: SGN-E398551+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 TTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA Predicted gene structure (within gDNA segment 18476 to 12099): Exon 1 12920 12709 ( 212 n); cDNA 430 640 ( 211 n); score: 0.894 PPA cDNA 12 1 MATCH C09HBa0278J12.1- SGN-E398551+ 0.894 212 0.331 C PGS_C09HBa0278J12.1-_SGN-E398551+ (12920 12709) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 488 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 548 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| || ||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TATTGGGTTA 608 TTATTGCCAT CTTTTATTCT TAATTATATG CTA 12709 ||||| |||| |||||||||| |||||||||| ||| TTATT-CCAT CTTTTATTCT TAATTATATG CTA 640 hqPGS_C09HBa0278J12.1-_SGN-E398551+ (12920 12709) ******************************************************************************** EST sequence 305 +strand 630 n (File: SGN-E396038+) 1 TTTTTTTTTT ATTATTTAAC TCTATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA Predicted gene structure (within gDNA segment 18476 to 12109): Exon 1 12920 12719 ( 202 n); cDNA 430 630 ( 201 n); score: 0.894 PPA cDNA 10 1 MATCH C09HBa0278J12.1- SGN-E396038+ 0.894 202 0.321 C PGS_C09HBa0278J12.1-_SGN-E396038+ (12920 12719) Alignment (genomic DNA sequence = upper lines): GTCGCAGGCA CGACGGCCCG TCACAGGCTA CGTAAT-TCA CACTGGGTCG GATTTCTGTT 12862 |||||||||| |||||| || ||||||| | |||||| || |||||||| ||||||| || GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCT-TT 488 AAGTAATTTA AGGGGCGTTT TGGACTATTC CGGCTTTAAT TATAAAGTTA GTGGGTTTAT 12802 | |||| |||| ||||| |||||||||| | ||||||| |||||||||| |||||||||| ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 548 ATTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 12742 ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TTGAGTAAAT TAGTGGGTTA 608 TTATTGCCAT CTTTTATTCT TAA 12719 ||||| |||| |||||||||| ||| TTATT-CCAT CTTTTATTCT TAA 630 hqPGS_C09HBa0278J12.1-_SGN-E396038+ (12920 12719) ******************************************************************************** EST sequence 88 -strand 356 n (File: SGN-E396037-) 1 GTCACAGACT CTTTGGTGGA AAGAGAGTCT CTGAACCTAG AGAAGACCTG CAGGACGGAC 61 CGTCGCAGGC ACGACGGGCC ATCACAGGTT GCGTAATCCC AGTCTGGGTC GGATTTCTTT 121 ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 181 GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TCGAGTAAAA CATCCATCTC 241 AATACCCCAT TCATCCTCAT CTTCTTCTCG TGAATCGTGG TAGTCATCAT CATCATCATC 301 ATGTTAATCA TATAGATGCG GCATAGTGGT AAACAAAACA TGAGGCTCCG CTGCCC Predicted gene structure (within gDNA segment 14806 to 10211): Exon 1 12913 12753 ( 161 n); cDNA 69 229 ( 161 n); score: 0.866 MATCH C09HBa0278J12.1- SGN-E396037- 0.866 161 0.452 C PGS_C09HBa0278J12.1-_SGN-E396037- (12913 12753) Alignment (genomic DNA sequence = upper lines): GCACGACGGC CCGTCACAGG CTACGTAAT- TCACACTGGG TCGGATTTCT GTTAAGTAAT 12855 ||||||||| || ||||||| | |||||| || ||||| |||||||||| ||| | GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT -TTACACGTT 127 TTAAGGGGCG TTTTGGACTA TTCCGGCTTT AATTATAAAG TTAGTGGGTT TATATTAATA 12795 ||||||| || |||||||||| |||| |||| |||||||||| |||||||||| ||| |||||| TTAAGGGACG TTTTGGACTA TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA 187 AGTCTAATTA CTTGGGGGTT AAAAGAGGTA ACCTTGAGTA AA 12753 |||||||||| | |||||||| |||||||||| |||| ||||| || AGTCTAATTA CCTGGGGGTT AAAAGAGGTA ACCTCGAGTA AA 229 hqPGS_C09HBa0278J12.1-_SGN-E396037- (12913 12753) ******************************************************************************** EST sequence 264 +strand 901 n (File: SGN-E554014+) 1 GGGGCGCTCT GACTGTGGAT CCCCCGGGCT GCAGGGAAAA ACCTATCAGC AGCAGGCGGC 61 GGCGGAGGAA AGTAGAAGCA GCAGGCGGAG CATCATGGGT ATCGATCTAG TTGCCGGAGG 121 TAAGTCCAAA AAGACTAAGC GCATTGCACC AAAATCCGAC GATGTTTATC TCAAGCTTCT 181 CGTCAAGTTG TACCGATTTC TATCACGGAG GACTGGTAGT AAGTTCAATG CTGTGATACT 241 GAAGAGACTC TTCATGAGCA AGATCAATAA AGCTCCATTG TCTCTATCAC GTTTGGTTAC 301 TTACATGACT GGAAAGGAGG ACAATATTGC TGTTGTTGTT GGGACTGTTA CCGATGATGT 361 TCGAGCTTAT GAAGTCCCAA AAATCAAGGT TACTGCATTG AGATTCACGG AAACAGCTAG 421 AGCTAGGATT GAGAAGGCTG GAGGAGAATG TTTGACCTTT GATCAGCTTG CTCTCAGAGC 481 CCCTCTTGGG CAGAACACTG TTTTGCTTAG GGGTCCAAAG AACTCAAGGG AGGCCGTTAA 541 GCACTTTGGT AAAGCACCTG GTGTCCCACA CAGCCACACA AAGCCTTATG TTCGCGCAAA 601 GGGAAGGAAG TTTGAGCGAG CAAGAGGAAA GAGAAATAGC AGAGGCTACA AGGCTTGAGG 661 AAGTGCTGGT GTTTGAATGC ACATTGATAG AGTTTCTATT AGAAGTATTT GCCAACCTAC 721 TTTTACCATT AATAGTATCT TGTTGGATTT TCTTATTTCA ACTCTGTTTC TCTTACACAC 781 TCCAGCATCA TATTGCTGAT TTTTGAATGT GTTATCTGTT TTGCAAAATT AATCTCTATT 841 TAGAGACTGA ATCTTTACAA CAAGGTTATG CTTGGTAATT TATTTTGTTT ATAAAAAAAA 901 A Predicted gene structure (within gDNA segment 22039 to 18117): Exon 1 21088 21028 ( 61 n); cDNA 37 97 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 98 187 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 188 316 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 317 499 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 18829 ( 399 n); cDNA 500 897 ( 398 n); score: 0.992 MATCH C09HBa0278J12.1- SGN-E554014+ 0.997 862 0.957 C PGS_C09HBa0278J12.1-_SGN-E554014+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 18829) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 96 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 97 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 133 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 187 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 187 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 226 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 286 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||||| |||||||||| TCACGTTTGG TTACTTACAT GACTGGAAAG .......... .......... .......... 316 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 316 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 316 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 316 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 316 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 316 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 316 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 316 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 316 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 316 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 316 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 316 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 316 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 316 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 316 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 316 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 316 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 364 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 424 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 484 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 499 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 499 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 499 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 499 GGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 19169 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 558 TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 19109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 618 AGCAAGAGGA AAGAGAAATA GCAGAGGCTA CAAGGCTTGA GGAAGTGCTG GTGTTTGAAT 19049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAGAGGA AAGAGAAATA GCAGAGGCTA CAAGGCTTGA GGAAGTGCTG GTGTTTGAAT 678 GCACATTGAT AGAGTTTCTA TTAGAAGTAT TTGCCAACCT ACTTTTACCA TTAATAGTAT 18989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACATTGAT AGAGTTTCTA TTAGAAGTAT TTGCCAACCT ACTTTTACCA TTAATAGTAT 738 CTTGTTGGAT TTTCTTATTT CAACTCTGTT TCTCTTACAC ACTCCAGCAT CATATTGCTG 18929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTGGAT TTTCTTATTT CAACTCTGTT TCTCTTACAC ACTCCAGCAT CATATTGCTG 798 ATTTTTGAAT GTGTTATCTG TTTTGCAAAA TTAATCTCTA TTTAGAGACT GAATCTTTAC 18869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTGAAT GTGTTATCTG TTTTGCAAAA TTAATCTCTA TTTAGAGACT GAATCTTTAC 858 AACAAGGTTA TGCTTGGTAA TTTATTTTGT TTTATACTAA 18829 |||||||||| |||||||||| ||||||||| |||||| || AACAAGGTTA TGCTTGGTAA TTTATTTTG- TTTATAAAAA 897 hqPGS_C09HBa0278J12.1-_SGN-E554014+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 18829) ******************************************************************************** EST sequence 412 +strand 394 n (File: SGN-E357098+) 1 AACACTGTTT TGCTTAGGGG TCCAAAGAAC TCAAGGGAGG CCGTTAAGCA CTTTGGTAAA 61 GCACCTGGTG TCCCACACAG CCACACAAAG CCTTATGTTC GCGCAAAGGG AAGGAAGTTT 121 GAGCGAGCAA GAGGAAAGAG AAATAGCAGA GGCTACAAGG CTTGAGGAAG TGCTGGTGTT 181 TGAATGCACA TTGATAGAGT TTCTATTAGA AGTATTTGCC AACCTACTTT TACCATTAAT 241 AGTATCTTGT TGGATTTTCT TATTTCAACT CTGTTTCTCT TACACACTCC AGCATCATAT 301 TGCTGATTTT TGAATGTGTT ATCTGTTTTG CAAAATTAAT CTCTATTTAG AGACTGAATC 361 TTTACAACAA GGTTATGCNT TGGTAAAAAA AAAA Predicted gene structure (within gDNA segment 19887 to 18086): Exon 1 19459 19454 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 19453 19228 ( 226 n); Pd: 0.997 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 19227 18856 ( 372 n); cDNA 7 378 ( 372 n); score: 1.000 PPA cDNA 385 394 MATCH C09HBa0278J12.1- SGN-E357098+ 1.000 378 0.959 C PGS_C09HBa0278J12.1-_SGN-E357098+ (19459 19454,19227 18856) Alignment (genomic DNA sequence = upper lines): AACACTGTAC GGAACTTCTC TCTCTCATCA GTTTGCATTT TTATGCCTTT TCTTTCATCA 19400 |||||| AACACT.... .......... .......... .......... .......... .......... 6 ATCAAGTGAA TAATTAGAGA ATATGCTGTA GTGCTCTTCA CTAGTATATA ATAACAAACC 19340 .......... .......... .......... .......... .......... .......... 6 GAGGTGTTTT TAGAATTGTG GTTTGAATCT CGTCCTGCAT AGGAAATGAT TATGTATTCA 19280 .......... .......... .......... .......... .......... .......... 6 TGGTAGAGGT AACATTGGCT AGTCATTTGT TTTGTAATGC TTTCTTGATC AGGTTTTGCT 19220 |||||||| .......... .......... .......... .......... .......... ..GTTTTGCT 14 TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC CTGGTGTCCC 19160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC CTGGTGTCCC 74 ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC GAGCAAGAGG 19100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC GAGCAAGAGG 134 AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA TGCACATTGA 19040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA TGCACATTGA 194 TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA TCTTGTTGGA 18980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA TCTTGTTGGA 254 TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCCAGCA TCATATTGCT GATTTTTGAA 18920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCCAGCA TCATATTGCT GATTTTTGAA 314 TGTGTTATCT GTTTTGCAAA ATTAATCTCT ATTTAGAGAC TGAATCTTTA CAACAAGGTT 18860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTATCT GTTTTGCAAA ATTAATCTCT ATTTAGAGAC TGAATCTTTA CAACAAGGTT 374 ATGC 18856 |||| ATGC 378 hqPGS_C09HBa0278J12.1-_SGN-E357098+ (19459 19454,19227 18856) ******************************************************************************** EST sequence 118 -strand 708 n (File: SGN-E549082-) 1 GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 61 TGGGTATCGA TCTAGTTGCC GGAGGTAAGT CCAAAAAGAC TAAGCGCATT GCACCAAAAT 121 CCGACGATGT TTATCTCAAG CTTCTCGTCA AGTTGTACCG ATTTCTATCA CGGAGGACTG 181 GTAGTAAGTT CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC 241 CATTGTCTCT ATCACGTTTG GTTACTGCAT TGAGATTCAC GGAAACAGCT AGAGCTAGGA 301 TTGAGAAGGC TGGAGGAGAA TGTTTGACCT TTGATCAGCT TGCTCTCAGA GCCCCTCTTG 361 GGCAGAACAC TGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG 421 GTAAAGCACC TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA 481 AGTTTGAGCG AGCAAGAGGA AAGAGAAATA GCAGAGGCTA CAAGGCTTGA GGAAGTGCTG 541 GTGTTTGAAT GCACATTGAT AGAGTTTCTA TTAGAAGTAT TTGCCAACCT ACTTTTACCA 601 TTAATAGTAT CTTGTTGGAT TTTCTTATTT CAACTCTGTT TCTCTTACAC ACTCCGAGCA 661 TCATATTGCT GATTTTTGAA TGTGTTATCT GTTTGCAAAA AAAAGAAA Predicted gene structure (within gDNA segment 21699 to 18166): Exon 1 21089 21028 ( 62 n); cDNA 1 62 ( 62 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 63 152 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20660 ( 108 n); cDNA 153 260 ( 108 n); score: 1.000 Intron 3 20659 19565 (1095 n); Pd: 0.526 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 19564 19454 ( 111 n); cDNA 261 371 ( 111 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 18895 ( 333 n); cDNA 372 704 ( 333 n); score: 0.983 MATCH C09HBa0278J12.1- SGN-E549082- 0.992 704 0.994 C PGS_C09HBa0278J12.1-_SGN-E549082- (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) Alignment (genomic DNA sequence = upper lines): GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 21030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 60 TGGTGAATAT TTTTTTTTAG AATATTCCTG CATTTGTTTT CACGGACGCC ATAGCTTGAT 20970 || TG........ .......... .......... .......... .......... .......... 62 TTTGTTATTT TGATTTTCTA TTTAGGGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 20910 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 97 GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAGGTATT 20850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAG..... 152 TTATTTCACT ATTGTCTTTA TAGATTTAGT GCATTTTTGG TTACTATACT GAGAATTGGA 20790 .......... .......... .......... .......... .......... .......... 152 TGTTTAATTG TGTGAATAAT AGTTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 20730 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 190 CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT 20670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT 250 ATCACGTTTG GTTACTTACA TGACTGGAAA GGTATTTTAT TCATTCATTT TAGCTTTGTT 20610 |||||||||| ATCACGTTTG .......... .......... .......... .......... .......... 260 TCACCTTACA CTGTTTGGAT AGTTTCATAA TGTTGTATTG ATTGTATCAT TTTATGTCGT 20550 .......... .......... .......... .......... .......... .......... 260 TGTGTAATAT TATGATCAAT AATTTGAATT ATAAACTTAC AAGTAAATAG CATACAGTGT 20490 .......... .......... .......... .......... .......... .......... 260 AGAGCTAGAC CTATCTAATG TGCCTTTATT TAGTGTTACC ATACAATAAA ATTTGTATAA 20430 .......... .......... .......... .......... .......... .......... 260 CAATCAAACT AACAGTTAAT TTATCCAACA ACACAATGAA ATACAATGTA ACAACCATCC 20370 .......... .......... .......... .......... .......... .......... 260 AAACATGCCT GCTAGTGATC TTTGATTGGA CACATCTACA GCGAGCAGTT ATCAAAATAT 20310 .......... .......... .......... .......... .......... .......... 260 TCTTGCTTTA TACTAGCATC GTTAAATTGT TAATGGTATT AACGACGTCC TGAGTAGCAT 20250 .......... .......... .......... .......... .......... .......... 260 TTATGTGAAT GAAATTGCTA AAAAGTAGTA ATATGCAGCG ATTAGGACTA AAGGAGTGAG 20190 .......... .......... .......... .......... .......... .......... 260 GAATTCACAT ATCAGAGTGT ACAATATAGC TTAACACTTG GGGGCCATTT ATATGCCGGA 20130 .......... .......... .......... .......... .......... .......... 260 CAGGAATATA GATAGTCTTG TGATAGAAAT TAACTACTGC GTATTTCCTT TTTTGGTTAC 20070 .......... .......... .......... .......... .......... .......... 260 TTATCCTAGG ATGACTTATA TTCGCTGTGA TAAGTTATCC ATTCTAGTGG ATGGATTAAT 20010 .......... .......... .......... .......... .......... .......... 260 ACAAGTATCA GGATTACTAT GAAAATGGAA AAAATACTCC CAAGGTTGCT CAAAACACTT 19950 .......... .......... .......... .......... .......... .......... 260 TTTCTATTGA AGAAGGTGGA GGGTTATCTT TGTATACAAC TTTTCCGAAT GTCCCTTTTT 19890 .......... .......... .......... .......... .......... .......... 260 TTATTTCTTA TCCTACATTG TATAAAGTGA TGCATAATTT TGCATATACA GCAAAGTTAT 19830 .......... .......... .......... .......... .......... .......... 260 GTCCCATGAT TATTTATGCA ATGCATAATC TATTCCTCAA CCATGCAGAG ATTTATATTA 19770 .......... .......... .......... .......... .......... .......... 260 GAATTGAAAT GTTAGATCTG TAATCAGAGT ATGTTCCAGG ATTGTTTGTT CTTGTACAGC 19710 .......... .......... .......... .......... .......... .......... 260 AAAGTAAATA ACCCTTGATA TTACTGAAGT ACTATACAGT TTATCTGAAT TGGCTTGTGT 19650 .......... .......... .......... .......... .......... .......... 260 ATGATGATGA TAGGAGGACA ATATTGCTGT TGTTGTTGGG ACTGTTACCG ATGATGTTCG 19590 .......... .......... .......... .......... .......... .......... 260 AGCTTATGAA GTCCCAAAAA TCAAGGTTAC TGCATTGAGA TTCACGGAAA CAGCTAGAGC 19530 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTAC TGCATTGAGA TTCACGGAAA CAGCTAGAGC 295 TAGGATTGAG AAGGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 19470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGATTGAG AAGGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 355 TCTTGGGCAG AACACTGTAC GGAACTTCTC TCTCTCATCA GTTTGCATTT TTATGCCTTT 19410 |||||||||| |||||| TCTTGGGCAG AACACT.... .......... .......... .......... .......... 371 TCTTTCATCA ATCAAGTGAA TAATTAGAGA ATATGCTGTA GTGCTCTTCA CTAGTATATA 19350 .......... .......... .......... .......... .......... .......... 371 ATAACAAACC GAGGTGTTTT TAGAATTGTG GTTTGAATCT CGTCCTGCAT AGGAAATGAT 19290 .......... .......... .......... .......... .......... .......... 371 TATGTATTCA TGGTAGAGGT AACATTGGCT AGTCATTTGT TTTGTAATGC TTTCTTGATC 19230 .......... .......... .......... .......... .......... .......... 371 AGGTTTTGCT TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC 19170 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTTTTGCT TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC 429 CTGGTGTCCC ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC 19110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTCCC ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC 489 GAGCAAGAGG AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA 19050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAAGAGG AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA 549 TGCACATTGA TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA 18990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACATTGA TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA 609 TCTTGTTGGA TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCC-AGC ATCATATTGC 18931 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TCTTGTTGGA TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCCGAGC ATCATATTGC 669 TGATTTTTGA ATGTGTTATC TGTTTTGCAA AATTAA 18895 |||||||||| |||||||||| || ||||||| || || TGATTTTTGA ATGTGTTATC TG-TTTGCAA AAAAAA 704 hqPGS_C09HBa0278J12.1-_SGN-E549082- (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) ******************************************************************************** EST sequence 380 +strand 707 n (File: SGN-E544679+) 1 GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 61 TGGGTATCGA TCTAGTTGCC GGAGGTAAGT CCAAAAAGAC TAAGCGCATT GCACCAAAAT 121 CCGACGATGT TTATCTCAAG CTTCTCGTCA AGTTGTACCG ATTTCTATCA CGGAGGACTG 181 GTAGTAAGTT CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC 241 CATTGTCTCT ATCACGTTTG GTTACTGCAT TGAGATTCAC GGAAACAGCT AGAGCTAGGA 301 TTGAGAAGGC TGGAGGAGAA TGTTTGACCT TTGATCAGCT TGCTCTCAGA GCCCCTCTTG 361 GGCAGAACAC TGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG 421 GTAAAGCACC TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA 481 AGTTTGAGCG AGCAAGAGGA AAGAGAAATA GCAGAGGCTA CAAGGCTTGA GGAAGTGCTG 541 GTGTTTGAAT GCACATTGAT AGAGTTTCTA TTAGAAGTAT TTGCCAACCT ACTTTTACCA 601 TTAATAGTAT CTTGTTGGAT TTTCTTATTT CAACTCTGTT TCTCTTACAC ACTCCAGCAT 661 CATATTGCTG ATTTTTGAAT GTGTTATCTG TTTTGCAAAA AAAAAAA Predicted gene structure (within gDNA segment 21689 to 18219): Exon 1 21089 21028 ( 62 n); cDNA 1 62 ( 62 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 63 152 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20660 ( 108 n); cDNA 153 260 ( 108 n); score: 1.000 Intron 3 20659 19565 (1095 n); Pd: 0.526 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 19564 19454 ( 111 n); cDNA 261 371 ( 111 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 18895 ( 333 n); cDNA 372 704 ( 333 n); score: 0.994 MATCH C09HBa0278J12.1- SGN-E544679+ 0.997 704 0.996 C PGS_C09HBa0278J12.1-_SGN-E544679+ (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) Alignment (genomic DNA sequence = upper lines): GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 21030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAACCTA TCAGCAGCAG GCGGCGGCGG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 60 TGGTGAATAT TTTTTTTTAG AATATTCCTG CATTTGTTTT CACGGACGCC ATAGCTTGAT 20970 || TG........ .......... .......... .......... .......... .......... 62 TTTGTTATTT TGATTTTCTA TTTAGGGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 20910 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 97 GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAGGTATT 20850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAG..... 152 TTATTTCACT ATTGTCTTTA TAGATTTAGT GCATTTTTGG TTACTATACT GAGAATTGGA 20790 .......... .......... .......... .......... .......... .......... 152 TGTTTAATTG TGTGAATAAT AGTTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 20730 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 190 CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT 20670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT 250 ATCACGTTTG GTTACTTACA TGACTGGAAA GGTATTTTAT TCATTCATTT TAGCTTTGTT 20610 |||||||||| ATCACGTTTG .......... .......... .......... .......... .......... 260 TCACCTTACA CTGTTTGGAT AGTTTCATAA TGTTGTATTG ATTGTATCAT TTTATGTCGT 20550 .......... .......... .......... .......... .......... .......... 260 TGTGTAATAT TATGATCAAT AATTTGAATT ATAAACTTAC AAGTAAATAG CATACAGTGT 20490 .......... .......... .......... .......... .......... .......... 260 AGAGCTAGAC CTATCTAATG TGCCTTTATT TAGTGTTACC ATACAATAAA ATTTGTATAA 20430 .......... .......... .......... .......... .......... .......... 260 CAATCAAACT AACAGTTAAT TTATCCAACA ACACAATGAA ATACAATGTA ACAACCATCC 20370 .......... .......... .......... .......... .......... .......... 260 AAACATGCCT GCTAGTGATC TTTGATTGGA CACATCTACA GCGAGCAGTT ATCAAAATAT 20310 .......... .......... .......... .......... .......... .......... 260 TCTTGCTTTA TACTAGCATC GTTAAATTGT TAATGGTATT AACGACGTCC TGAGTAGCAT 20250 .......... .......... .......... .......... .......... .......... 260 TTATGTGAAT GAAATTGCTA AAAAGTAGTA ATATGCAGCG ATTAGGACTA AAGGAGTGAG 20190 .......... .......... .......... .......... .......... .......... 260 GAATTCACAT ATCAGAGTGT ACAATATAGC TTAACACTTG GGGGCCATTT ATATGCCGGA 20130 .......... .......... .......... .......... .......... .......... 260 CAGGAATATA GATAGTCTTG TGATAGAAAT TAACTACTGC GTATTTCCTT TTTTGGTTAC 20070 .......... .......... .......... .......... .......... .......... 260 TTATCCTAGG ATGACTTATA TTCGCTGTGA TAAGTTATCC ATTCTAGTGG ATGGATTAAT 20010 .......... .......... .......... .......... .......... .......... 260 ACAAGTATCA GGATTACTAT GAAAATGGAA AAAATACTCC CAAGGTTGCT CAAAACACTT 19950 .......... .......... .......... .......... .......... .......... 260 TTTCTATTGA AGAAGGTGGA GGGTTATCTT TGTATACAAC TTTTCCGAAT GTCCCTTTTT 19890 .......... .......... .......... .......... .......... .......... 260 TTATTTCTTA TCCTACATTG TATAAAGTGA TGCATAATTT TGCATATACA GCAAAGTTAT 19830 .......... .......... .......... .......... .......... .......... 260 GTCCCATGAT TATTTATGCA ATGCATAATC TATTCCTCAA CCATGCAGAG ATTTATATTA 19770 .......... .......... .......... .......... .......... .......... 260 GAATTGAAAT GTTAGATCTG TAATCAGAGT ATGTTCCAGG ATTGTTTGTT CTTGTACAGC 19710 .......... .......... .......... .......... .......... .......... 260 AAAGTAAATA ACCCTTGATA TTACTGAAGT ACTATACAGT TTATCTGAAT TGGCTTGTGT 19650 .......... .......... .......... .......... .......... .......... 260 ATGATGATGA TAGGAGGACA ATATTGCTGT TGTTGTTGGG ACTGTTACCG ATGATGTTCG 19590 .......... .......... .......... .......... .......... .......... 260 AGCTTATGAA GTCCCAAAAA TCAAGGTTAC TGCATTGAGA TTCACGGAAA CAGCTAGAGC 19530 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTAC TGCATTGAGA TTCACGGAAA CAGCTAGAGC 295 TAGGATTGAG AAGGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 19470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGATTGAG AAGGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 355 TCTTGGGCAG AACACTGTAC GGAACTTCTC TCTCTCATCA GTTTGCATTT TTATGCCTTT 19410 |||||||||| |||||| TCTTGGGCAG AACACT.... .......... .......... .......... .......... 371 TCTTTCATCA ATCAAGTGAA TAATTAGAGA ATATGCTGTA GTGCTCTTCA CTAGTATATA 19350 .......... .......... .......... .......... .......... .......... 371 ATAACAAACC GAGGTGTTTT TAGAATTGTG GTTTGAATCT CGTCCTGCAT AGGAAATGAT 19290 .......... .......... .......... .......... .......... .......... 371 TATGTATTCA TGGTAGAGGT AACATTGGCT AGTCATTTGT TTTGTAATGC TTTCTTGATC 19230 .......... .......... .......... .......... .......... .......... 371 AGGTTTTGCT TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC 19170 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTTTTGCT TAGGGGTCCA AAGAACTCAA GGGAGGCCGT TAAGCACTTT GGTAAAGCAC 429 CTGGTGTCCC ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC 19110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTCCC ACACAGCCAC ACAAAGCCTT ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC 489 GAGCAAGAGG AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA 19050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAAGAGG AAAGAGAAAT AGCAGAGGCT ACAAGGCTTG AGGAAGTGCT GGTGTTTGAA 549 TGCACATTGA TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA 18990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACATTGA TAGAGTTTCT ATTAGAAGTA TTTGCCAACC TACTTTTACC ATTAATAGTA 609 TCTTGTTGGA TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCCAGCA TCATATTGCT 18930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTTGGA TTTTCTTATT TCAACTCTGT TTCTCTTACA CACTCCAGCA TCATATTGCT 669 GATTTTTGAA TGTGTTATCT GTTTTGCAAA ATTAA 18895 |||||||||| |||||||||| |||||||||| | || GATTTTTGAA TGTGTTATCT GTTTTGCAAA AAAAA 704 hqPGS_C09HBa0278J12.1-_SGN-E544679+ (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) ******************************************************************************** EST sequence 56 -strand 472 n (File: SGN-E281030-) 1 CGAGCTTATG AAGTCCCAAA AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA 61 GCTAGGATTG AGAAGGCTGG AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC 121 CCTCTTGGGC AGAACACTGT TTTGCTTAGG GGTCCAAAGA ACTCAAGGGA GGCCGTTAAG 181 CACTTTGGTA AAGCACCTGG TGTCCCACAC AGCCACACAA AGCTTTATGT TCGCGCAAAG 241 GGAAGGAAGT TTGAGCGAGC AAGAGGAAAG AGAAATAGCA GAGGCTACAA GGCTTGAGGA 301 AGTGCTGGTG TTTGAATGCA CATTGATAGA GTTTCTATTA GAAGTATTTG CCAACCTACT 361 TTTACCATTA ATAGTATCTT GTTGGATTTT CTTATTTCAA CTCTGTTTTT CTTACCCACT 421 CCAGCATCAT ATTGCTGATT TTTGAATGTG TTATCTGTTT TGCAAAAAAA AA Predicted gene structure (within gDNA segment 20201 to 18249): Exon 1 19591 19454 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 19227 18895 ( 333 n); cDNA 139 471 ( 333 n); score: 0.985 MATCH C09HBa0278J12.1- SGN-E281030- 0.989 471 0.998 C PGS_C09HBa0278J12.1-_SGN-E281030- (19591 19454,19227 18895) Alignment (genomic DNA sequence = upper lines): CGAGCTTATG AAGTCCCAAA AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA 19532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGCTTATG AAGTCCCAAA AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA 60 GCTAGGATTG AGAAGGCTGG AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC 19472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGGATTG AGAAGGCTGG AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC 120 CCTCTTGGGC AGAACACTGT ACGGAACTTC TCTCTCTCAT CAGTTTGCAT TTTTATGCCT 19412 |||||||||| |||||||| CCTCTTGGGC AGAACACT.. .......... .......... .......... .......... 138 TTTCTTTCAT CAATCAAGTG AATAATTAGA GAATATGCTG TAGTGCTCTT CACTAGTATA 19352 .......... .......... .......... .......... .......... .......... 138 TAATAACAAA CCGAGGTGTT TTTAGAATTG TGGTTTGAAT CTCGTCCTGC ATAGGAAATG 19292 .......... .......... .......... .......... .......... .......... 138 ATTATGTATT CATGGTAGAG GTAACATTGG CTAGTCATTT GTTTTGTAAT GCTTTCTTGA 19232 .......... .......... .......... .......... .......... .......... 138 TCAGGTTTTG CTTAGGGGTC CAAAGAACTC AAGGGAGGCC GTTAAGCACT TTGGTAAAGC 19172 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTTTTG CTTAGGGGTC CAAAGAACTC AAGGGAGGCC GTTAAGCACT TTGGTAAAGC 194 ACCTGGTGTC CCACACAGCC ACACAAAGCC TTATGTTCGC GCAAAGGGAA GGAAGTTTGA 19112 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACCTGGTGTC CCACACAGCC ACACAAAGCT TTATGTTCGC GCAAAGGGAA GGAAGTTTGA 254 GCGAGCAAGA GGAAAGAGAA ATAGCAGAGG CTACAAGGCT TGAGGAAGTG CTGGTGTTTG 19052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGCAAGA GGAAAGAGAA ATAGCAGAGG CTACAAGGCT TGAGGAAGTG CTGGTGTTTG 314 AATGCACATT GATAGAGTTT CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG 18992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCACATT GATAGAGTTT CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG 374 TATCTTGTTG GATTTTCTTA TTTCAACTCT GTTTCTCTTA CACACTCCAG CATCATATTG 18932 |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| TATCTTGTTG GATTTTCTTA TTTCAACTCT GTTTTTCTTA CCCACTCCAG CATCATATTG 434 CTGATTTTTG AATGTGTTAT CTGTTTTGCA AAATTAA 18895 |||||||||| |||||||||| |||||||||| ||| || CTGATTTTTG AATGTGTTAT CTGTTTTGCA AAAAAAA 471 hqPGS_C09HBa0278J12.1-_SGN-E281030- (19591 19454,19227 18895) ******************************************************************************** EST sequence 210 +strand 677 n (File: SGN-E305444+) 1 AAAATCCGAC GATGTTTATC TCAAGCTTCT CGTCAAGTTG TACCGATTTC TATCACGGAG 61 GACTGGTAGT AAGTTCAATG CTGTGATACT GAAGAGACTC TTCATGAGCA AGATCAATAA 121 AGCTCCATTG TCTCTATCAC GTTTGGTTAC TTACATGACT GGAAAGGAGG ACAATATTGC 181 TGTTGTTGTT GGGACTGTTA CCGATGATGT TCGAGCTTAT GAAGTCCCAA AAATCAAGGT 241 TACTGCATTG AGATTCACGG AAACAGCTAG AGCTAGGATT GAGAAGGCTG GAGGAGAATG 301 TTTGACCTTT GATCAGCTTG CTCTCAGAGC CCCTCTTGGG CAGAACACTG TTTTGCTTAT 361 GGGTCCAAAG AACTCAAGGG AGGCCGTTAA GCACTTTGGT AAAGCACCTG GTGTCCCACA 421 CAGCCACACA AAGCCTTATG TTCTCGCAAA GGGAAGGAAG TTTGAGCGAG CAAGAGGAAA 481 GAGAAATAGC AGAGGCTACA AGGCTTGAGG AAGTGCTGGT GTTTGAATGC ACATTGATAG 541 AGTTTCTATT AGAAGTATTT GCCAACCTAC TTTTACCATT AATAGTATCT TGTTGGATTA 601 TCTTATTTCA ACTCTGTTTC TCTTACACAC TCCAGCATCA TATTGCTGAT TTTTGAATGT 661 GTTATCTGGT TTGCAAA Predicted gene structure (within gDNA segment 21491 to 18209): Exon 1 20891 20855 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 20854 20768 ( 87 n); Pd: 1.000 (s: 0), Pa: 0.785 (s: 1.00) Exon 2 20767 20639 ( 129 n); cDNA 38 166 ( 129 n); score: 1.000 Intron 2 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 19636 19454 ( 183 n); cDNA 167 349 ( 183 n); score: 1.000 Intron 3 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 4 19227 18900 ( 328 n); cDNA 350 677 ( 328 n); score: 0.988 MATCH C09HBa0278J12.1- SGN-E305444+ 0.994 677 1.000 C PGS_C09HBa0278J12.1-_SGN-E305444+ (20891 20855,20767 20639,19636 19454,19227 18900) Alignment (genomic DNA sequence = upper lines): AAAATCCGAC GATGTTTATC TCAAGCTTCT CGTCAAGGTA TTTTATTTCA CTATTGTCTT 20832 |||||||||| |||||||||| |||||||||| ||||||| AAAATCCGAC GATGTTTATC TCAAGCTTCT CGTCAAG... .......... .......... 37 TATAGATTTA GTGCATTTTT GGTTACTATA CTGAGAATTG GATGTTTAAT TGTGTGAATA 20772 .......... .......... .......... .......... .......... .......... 37 ATAGTTGTAC CGATTTCTAT CACGGAGGAC TGGTAGTAAG TTCAATGCTG TGATACTGAA 20712 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TTGTAC CGATTTCTAT CACGGAGGAC TGGTAGTAAG TTCAATGCTG TGATACTGAA 93 GAGACTCTTC ATGAGCAAGA TCAATAAAGC TCCATTGTCT CTATCACGTT TGGTTACTTA 20652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTCTTC ATGAGCAAGA TCAATAAAGC TCCATTGTCT CTATCACGTT TGGTTACTTA 153 CATGACTGGA AAGGTATTTT ATTCATTCAT TTTAGCTTTG TTTCACCTTA CACTGTTTGG 20592 |||||||||| ||| CATGACTGGA AAG....... .......... .......... .......... .......... 166 ATAGTTTCAT AATGTTGTAT TGATTGTATC ATTTTATGTC GTTGTGTAAT ATTATGATCA 20532 .......... .......... .......... .......... .......... .......... 166 ATAATTTGAA TTATAAACTT ACAAGTAAAT AGCATACAGT GTAGAGCTAG ACCTATCTAA 20472 .......... .......... .......... .......... .......... .......... 166 TGTGCCTTTA TTTAGTGTTA CCATACAATA AAATTTGTAT AACAATCAAA CTAACAGTTA 20412 .......... .......... .......... .......... .......... .......... 166 ATTTATCCAA CAACACAATG AAATACAATG TAACAACCAT CCAAACATGC CTGCTAGTGA 20352 .......... .......... .......... .......... .......... .......... 166 TCTTTGATTG GACACATCTA CAGCGAGCAG TTATCAAAAT ATTCTTGCTT TATACTAGCA 20292 .......... .......... .......... .......... .......... .......... 166 TCGTTAAATT GTTAATGGTA TTAACGACGT CCTGAGTAGC ATTTATGTGA ATGAAATTGC 20232 .......... .......... .......... .......... .......... .......... 166 TAAAAAGTAG TAATATGCAG CGATTAGGAC TAAAGGAGTG AGGAATTCAC ATATCAGAGT 20172 .......... .......... .......... .......... .......... .......... 166 GTACAATATA GCTTAACACT TGGGGGCCAT TTATATGCCG GACAGGAATA TAGATAGTCT 20112 .......... .......... .......... .......... .......... .......... 166 TGTGATAGAA ATTAACTACT GCGTATTTCC TTTTTTGGTT ACTTATCCTA GGATGACTTA 20052 .......... .......... .......... .......... .......... .......... 166 TATTCGCTGT GATAAGTTAT CCATTCTAGT GGATGGATTA ATACAAGTAT CAGGATTACT 19992 .......... .......... .......... .......... .......... .......... 166 ATGAAAATGG AAAAAATACT CCCAAGGTTG CTCAAAACAC TTTTTCTATT GAAGAAGGTG 19932 .......... .......... .......... .......... .......... .......... 166 GAGGGTTATC TTTGTATACA ACTTTTCCGA ATGTCCCTTT TTTTATTTCT TATCCTACAT 19872 .......... .......... .......... .......... .......... .......... 166 TGTATAAAGT GATGCATAAT TTTGCATATA CAGCAAAGTT ATGTCCCATG ATTATTTATG 19812 .......... .......... .......... .......... .......... .......... 166 CAATGCATAA TCTATTCCTC AACCATGCAG AGATTTATAT TAGAATTGAA ATGTTAGATC 19752 .......... .......... .......... .......... .......... .......... 166 TGTAATCAGA GTATGTTCCA GGATTGTTTG TTCTTGTACA GCAAAGTAAA TAACCCTTGA 19692 .......... .......... .......... .......... .......... .......... 166 TATTACTGAA GTACTATACA GTTTATCTGA ATTGGCTTGT GTATGATGAT GATAGGAGGA 19632 ||||| .......... .......... .......... .......... .......... .....GAGGA 171 CAATATTGCT GTTGTTGTTG GGACTGTTAC CGATGATGTT CGAGCTTATG AAGTCCCAAA 19572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATTGCT GTTGTTGTTG GGACTGTTAC CGATGATGTT CGAGCTTATG AAGTCCCAAA 231 AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA GCTAGGATTG AGAAGGCTGG 19512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA GCTAGGATTG AGAAGGCTGG 291 AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC CCTCTTGGGC AGAACACTGT 19452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC CCTCTTGGGC AGAACACT.. 349 ACGGAACTTC TCTCTCTCAT CAGTTTGCAT TTTTATGCCT TTTCTTTCAT CAATCAAGTG 19392 .......... .......... .......... .......... .......... .......... 349 AATAATTAGA GAATATGCTG TAGTGCTCTT CACTAGTATA TAATAACAAA CCGAGGTGTT 19332 .......... .......... .......... .......... .......... .......... 349 TTTAGAATTG TGGTTTGAAT CTCGTCCTGC ATAGGAAATG ATTATGTATT CATGGTAGAG 19272 .......... .......... .......... .......... .......... .......... 349 GTAACATTGG CTAGTCATTT GTTTTGTAAT GCTTTCTTGA TCAGGTTTTG CTTAGGGGTC 19212 |||||| |||| ||||| .......... .......... .......... .......... ....GTTTTG CTTATGGGTC 365 CAAAGAACTC AAGGGAGGCC GTTAAGCACT TTGGTAAAGC ACCTGGTGTC CCACACAGCC 19152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAACTC AAGGGAGGCC GTTAAGCACT TTGGTAAAGC ACCTGGTGTC CCACACAGCC 425 ACACAAAGCC TTATGTTCGC GCAAAGGGAA GGAAGTTTGA GCGAGCAAGA GGAAAGAGAA 19092 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ACACAAAGCC TTATGTTCTC GCAAAGGGAA GGAAGTTTGA GCGAGCAAGA GGAAAGAGAA 485 ATAGCAGAGG CTACAAGGCT TGAGGAAGTG CTGGTGTTTG AATGCACATT GATAGAGTTT 19032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCAGAGG CTACAAGGCT TGAGGAAGTG CTGGTGTTTG AATGCACATT GATAGAGTTT 545 CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG TATCTTGTTG GATTTTCTTA 18972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG TATCTTGTTG GATTATCTTA 605 TTTCAACTCT GTTTCTCTTA CACACTCCAG CATCATATTG CTGATTTTTG AATGTGTTAT 18912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAACTCT GTTTCTCTTA CACACTCCAG CATCATATTG CTGATTTTTG AATGTGTTAT 665 CTGTTTTGCA AA 18900 ||| |||||| || CTGGTTTGCA AA 677 hqPGS_C09HBa0278J12.1-_SGN-E305444+ (20891 20855,20767 20639,19636 19454,19227 18900) ******************************************************************************** EST sequence 31 -strand 530 n (File: SGN-E252909-) 1 AAATGAAAAA GAACAGCCAT CAACAAGAAG AGACATAGTT GAAGCCTTGG TTATGCCATG 61 ACAATGGTTC TTACGCAGAA CTTATTTTTA GATGGCTTTT TACATGACAT ATTTTAGATG 121 CGAATCTTGT TCACCTGAAA AAAACCTACT AATATTCAAA TAATAGTTCA AGTTTGACAG 181 CTAGACGGCT AAATAATTAC TAGCACGAGG CTTAAGCTAA CGCAACTTAA AGTTGATGCG 241 TCACAGAATA ATTGGTCTAA CGATTGGTCT TTTAGTTGTT AATACTTAAA AGGTGTCAAT 301 ATTTTCGTTT TTGAAATACA TTCGTTCTTG AAAAATGCTT GAGGAAGTGC TGGTGTTTGA 361 ATGCACATTG ATAGAGTTTC TATTAGAAGT ATTTGCCAAC CTACTTTTAC CATTAATAGT 421 ATCTTGTTGG ATTTTCTTAT TTCAACTCTG TTTCTCTTAC ACACTCCAGC ATCACATTGC 481 TGATTTTTGA ATGTGTTATC TGTTTTGCAA AAAAAAAAAA AAAAAACTCG Predicted gene structure (within gDNA segment 23044 to 18119): Exon 1 19631 19616 ( 16 n); cDNA 297 312 ( 16 n); score: 0.750 Intron 1 19615 19298 ( 318 n); Pd: 0.000 (s: 0), Pa: 0.149 (s: 0) Exon 2 19297 19272 ( 26 n); cDNA 313 336 ( 24 n); score: 0.577 Intron 2 19271 19075 ( 197 n); Pd: 0.538 (s: 0), Pa: 0.000 (s: 1.00) Exon 3 19074 18900 ( 175 n); cDNA 337 511 ( 175 n); score: 0.994 PPA cDNA 512 527 MATCH C09HBa0278J12.1- SGN-E252909- 0.994 217 0.409 C PGS_C09HBa0278J12.1-_SGN-E252909- (19631 19616,19297 19272,19074 18900) Alignment (genomic DNA sequence = upper lines): CAATATTGCT GTTGTTGTTG GGACTGTTAC CGATGATGTT CGAGCTTATG AAGTCCCAAA 19572 ||||||| ||| || CAATATTTTC GTTTTT.... .......... .......... .......... .......... 312 AATCAAGGTT ACTGCATTGA GATTCACGGA AACAGCTAGA GCTAGGATTG AGAAGGCTGG 19512 .......... .......... .......... .......... .......... .......... 312 AGGAGAATGT TTGACCTTTG ATCAGCTTGC TCTCAGAGCC CCTCTTGGGC AGAACACTGT 19452 .......... .......... .......... .......... .......... .......... 312 ACGGAACTTC TCTCTCTCAT CAGTTTGCAT TTTTATGCCT TTTCTTTCAT CAATCAAGTG 19392 .......... .......... .......... .......... .......... .......... 312 AATAATTAGA GAATATGCTG TAGTGCTCTT CACTAGTATA TAATAACAAA CCGAGGTGTT 19332 .......... .......... .......... .......... .......... .......... 312 TTTAGAATTG TGGTTTGAAT CTCGTCCTGC ATAGGAAATG ATTATGTATT CATGGTAGAG 19272 ||||| | || || | || | | .......... .......... .......... ....GAAAT- A-CATTCGTT CTTGAAAAAT 336 GTAACATTGG CTAGTCATTT GTTTTGTAAT GCTTTCTTGA TCAGGTTTTG CTTAGGGGTC 19212 .......... .......... .......... .......... .......... .......... 336 CAAAGAACTC AAGGGAGGCC GTTAAGCACT TTGGTAAAGC ACCTGGTGTC CCACACAGCC 19152 .......... .......... .......... .......... .......... .......... 336 ACACAAAGCC TTATGTTCGC GCAAAGGGAA GGAAGTTTGA GCGAGCAAGA GGAAAGAGAA 19092 .......... .......... .......... .......... .......... .......... 336 ATAGCAGAGG CTACAAGGCT TGAGGAAGTG CTGGTGTTTG AATGCACATT GATAGAGTTT 19032 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCT TGAGGAAGTG CTGGTGTTTG AATGCACATT GATAGAGTTT 379 CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG TATCTTGTTG GATTTTCTTA 18972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTAGAAG TATTTGCCAA CCTACTTTTA CCATTAATAG TATCTTGTTG GATTTTCTTA 439 TTTCAACTCT GTTTCTCTTA CACACTCCAG CATCATATTG CTGATTTTTG AATGTGTTAT 18912 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTCAACTCT GTTTCTCTTA CACACTCCAG CATCACATTG CTGATTTTTG AATGTGTTAT 499 CTGTTTTGCA AA 18900 |||||||||| || CTGTTTTGCA AA 511 hqPGS_C09HBa0278J12.1-_SGN-E252909- (19297 19272,19074 18900) ******************************************************************************** EST sequence 218 +strand 590 n (File: SGN-E339508+) 1 AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GGTATCGATC 61 TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC GACGATGTTT 121 ATCTCAAGCT TCTCGTCAAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA 181 ATGCTGTGAT ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT 241 CACGTTTGGT TACTTACATG ACTGGAAAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG 301 TTACCGATGA TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA 361 CGGAAACAGC TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC 421 TTGCTCTCAG AGCCCCTCTT GGGCAGAACA CTGTTTTGCT TAGGGGTCCA AAGAACTCAA 481 GGGAGGCCGT TAAGCACTTT GGTAAAGCAC CTGGTGTCCC ACACAGCCAC ACAAAGCCTT 541 ATGTTCGCGC AAAGGGAAGG AAGTTTGAGC GAGCAAGAGG AAAGAGAAAT Predicted gene structure (within gDNA segment 21677 to 18480): Exon 1 21077 21028 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 51 140 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 141 269 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 270 452 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19090 ( 138 n); cDNA 453 590 ( 138 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E339508+ 1.000 590 1.000 C PGS_C09HBa0278J12.1-_SGN-E339508+ (21077 21028,20944 20855,20767 20639,19636 19454,19227 19090) Alignment (genomic DNA sequence = upper lines): AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GTGAATATTT 21018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG .......... 50 TTTTTTAGAA TATTCCTGCA TTTGTTTTCA CGGACGCCAT AGCTTGATTT TGTTATTTTG 20958 .......... .......... .......... .......... .......... .......... 50 ATTTTCTATT TAGGGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 20898 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 97 TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGGTATTTT ATTTCACTAT 20838 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAG....... .......... 140 TGTCTTTATA GATTTAGTGC ATTTTTGGTT ACTATACTGA GAATTGGATG TTTAATTGTG 20778 .......... .......... .......... .......... .......... .......... 140 TGAATAATAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 20718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 190 ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 20658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 250 TACTTACATG ACTGGAAAGG TATTTTATTC ATTCATTTTA GCTTTGTTTC ACCTTACACT 20598 |||||||||| ||||||||| TACTTACATG ACTGGAAAG. .......... .......... .......... .......... 269 GTTTGGATAG TTTCATAATG TTGTATTGAT TGTATCATTT TATGTCGTTG TGTAATATTA 20538 .......... .......... .......... .......... .......... .......... 269 TGATCAATAA TTTGAATTAT AAACTTACAA GTAAATAGCA TACAGTGTAG AGCTAGACCT 20478 .......... .......... .......... .......... .......... .......... 269 ATCTAATGTG CCTTTATTTA GTGTTACCAT ACAATAAAAT TTGTATAACA ATCAAACTAA 20418 .......... .......... .......... .......... .......... .......... 269 CAGTTAATTT ATCCAACAAC ACAATGAAAT ACAATGTAAC AACCATCCAA ACATGCCTGC 20358 .......... .......... .......... .......... .......... .......... 269 TAGTGATCTT TGATTGGACA CATCTACAGC GAGCAGTTAT CAAAATATTC TTGCTTTATA 20298 .......... .......... .......... .......... .......... .......... 269 CTAGCATCGT TAAATTGTTA ATGGTATTAA CGACGTCCTG AGTAGCATTT ATGTGAATGA 20238 .......... .......... .......... .......... .......... .......... 269 AATTGCTAAA AAGTAGTAAT ATGCAGCGAT TAGGACTAAA GGAGTGAGGA ATTCACATAT 20178 .......... .......... .......... .......... .......... .......... 269 CAGAGTGTAC AATATAGCTT AACACTTGGG GGCCATTTAT ATGCCGGACA GGAATATAGA 20118 .......... .......... .......... .......... .......... .......... 269 TAGTCTTGTG ATAGAAATTA ACTACTGCGT ATTTCCTTTT TTGGTTACTT ATCCTAGGAT 20058 .......... .......... .......... .......... .......... .......... 269 GACTTATATT CGCTGTGATA AGTTATCCAT TCTAGTGGAT GGATTAATAC AAGTATCAGG 19998 .......... .......... .......... .......... .......... .......... 269 ATTACTATGA AAATGGAAAA AATACTCCCA AGGTTGCTCA AAACACTTTT TCTATTGAAG 19938 .......... .......... .......... .......... .......... .......... 269 AAGGTGGAGG GTTATCTTTG TATACAACTT TTCCGAATGT CCCTTTTTTT ATTTCTTATC 19878 .......... .......... .......... .......... .......... .......... 269 CTACATTGTA TAAAGTGATG CATAATTTTG CATATACAGC AAAGTTATGT CCCATGATTA 19818 .......... .......... .......... .......... .......... .......... 269 TTTATGCAAT GCATAATCTA TTCCTCAACC ATGCAGAGAT TTATATTAGA ATTGAAATGT 19758 .......... .......... .......... .......... .......... .......... 269 TAGATCTGTA ATCAGAGTAT GTTCCAGGAT TGTTTGTTCT TGTACAGCAA AGTAAATAAC 19698 .......... .......... .......... .......... .......... .......... 269 CCTTGATATT ACTGAAGTAC TATACAGTTT ATCTGAATTG GCTTGTGTAT GATGATGATA 19638 .......... .......... .......... .......... .......... .......... 269 GGAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 19578 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 328 CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 19518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 388 GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 19458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 448 CACTGTACGG AACTTCTCTC TCTCATCAGT TTGCATTTTT ATGCCTTTTC TTTCATCAAT 19398 |||| CACT...... .......... .......... .......... .......... .......... 452 CAAGTGAATA ATTAGAGAAT ATGCTGTAGT GCTCTTCACT AGTATATAAT AACAAACCGA 19338 .......... .......... .......... .......... .......... .......... 452 GGTGTTTTTA GAATTGTGGT TTGAATCTCG TCCTGCATAG GAAATGATTA TGTATTCATG 19278 .......... .......... .......... .......... .......... .......... 452 GTAGAGGTAA CATTGGCTAG TCATTTGTTT TGTAATGCTT TCTTGATCAG GTTTTGCTTA 19218 |||||||||| .......... .......... .......... .......... .......... GTTTTGCTTA 462 GGGGTCCAAA GAACTCAAGG GAGGCCGTTA AGCACTTTGG TAAAGCACCT GGTGTCCCAC 19158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTCCAAA GAACTCAAGG GAGGCCGTTA AGCACTTTGG TAAAGCACCT GGTGTCCCAC 522 ACAGCCACAC AAAGCCTTAT GTTCGCGCAA AGGGAAGGAA GTTTGAGCGA GCAAGAGGAA 19098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCCACAC AAAGCCTTAT GTTCGCGCAA AGGGAAGGAA GTTTGAGCGA GCAAGAGGAA 582 AGAGAAAT 19090 |||||||| AGAGAAAT 590 hqPGS_C09HBa0278J12.1-_SGN-E339508+ (21077 21028,20944 20855,20767 20639,19636 19454,19227 19090) ******************************************************************************** EST sequence 292 +strand 491 n (File: SGN-E305139+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTGCATT GAGATTCACG GAAACAGCTA GAGCTAGGAT 301 TGAGAAGGCT GGAGGAGAAT GTTTGACCTT TGATCAGCTT GCTCTCAGAG CCCCTCTTGG 361 GCAGAACACT GTTTTGCTTA GGGGTCCAAA GAACTCAAGG GAGGCCGTTA AGCACTTTGG 421 TAAAGCACCT GGTGTCCCAC ACAGCCACAC AAAGCCTTAT GTTCGCGCAA AGGGAAGGAA 481 GTTTGAGCGA G Predicted gene structure (within gDNA segment 21688 to 18497): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20660 ( 108 n); cDNA 152 259 ( 108 n); score: 1.000 Intron 3 20659 19565 (1095 n); Pd: 0.526 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 19564 19454 ( 111 n); cDNA 260 370 ( 111 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19107 ( 121 n); cDNA 371 491 ( 121 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E305139+ 1.000 491 1.000 C PGS_C09HBa0278J12.1-_SGN-E305139+ (21088 21028,20944 20855,20767 20660,19564 19454,19227 19107) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 ||||||||| TCACGTTTG. .......... .......... .......... .......... .......... 259 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 259 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 259 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 259 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 259 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 259 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 259 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 259 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 259 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 259 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 259 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 259 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 259 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 259 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 259 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 259 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 259 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 .......... .......... .......... .......... .......... .......... 259 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 295 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 355 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 370 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 370 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 370 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 370 GGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 19169 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 429 TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 19109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 489 AG 19107 || AG 491 hqPGS_C09HBa0278J12.1-_SGN-E305139+ (21088 21028,20944 20855,20767 20660,19564 19454,19227 19107) ******************************************************************************** EST sequence 334 +strand 538 n (File: SGN-E307542+) 1 ATGCGGAGCA TCATGGGTAT CGATCTAGTT GCCGGATGTA AGTCCAAAAA GACTAATCGC 61 GTTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAGTTGTA CCGATTTCTA 121 TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT CATGAGCAAT 181 ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG AAAGGAGGAC 241 AATATTGCTG TTGTTGATGG GACTGTTACC GATGATGTTC GAGCTTATGA AGTCCCAAAA 301 ATCAAGGTTA CTGCATTGAG ATTCACGGAA ACAGCTAGAG CTAGGATTGA GAAGGCTGGA 361 GGAGAATGTT TGACCTTTGA TCAGCTTGCT CTCAGAGCCC CTCTTGGGCA GAACACTGTT 421 TTGCTTAGGG GTCCAAAGAA CTCAAGGGAG GCCGTTAAGC ACTTTGGTAA AGCACCTGGT 481 GTCCCACACA GCCACACAAA GCCTTATGTT CGCGCAAAGG GAAGGAAGTT TGAGCGAG Predicted gene structure (within gDNA segment 21685 to 18497): Exon 1 21040 21028 ( 13 n); cDNA 3 15 ( 13 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 0.94) Exon 2 20944 20855 ( 90 n); cDNA 16 105 ( 90 n); score: 0.967 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 0.96), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 106 234 ( 129 n); score: 0.992 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 4 19636 19454 ( 183 n); cDNA 235 417 ( 183 n); score: 0.995 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19107 ( 121 n); cDNA 418 538 ( 121 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E307542+ 0.990 536 0.996 C PGS_C09HBa0278J12.1-_SGN-E307542+ (21040 21028,20944 20855,20767 20639,19636 19454,19227 19107) Alignment (genomic DNA sequence = upper lines): GCGGAGCATC ATGGTGAATA TTTTTTTTTA GAATATTCCT GCATTTGTTT TCACGGACGC 20981 |||||||||| ||| GCGGAGCATC ATG....... .......... .......... .......... .......... 15 CATAGCTTGA TTTTGTTATT TTGATTTTCT ATTTAGGGTA TCGATCTAGT TGCCGGAGGT 20921 |||| |||||||||| ||||||| || .......... .......... .......... ......GGTA TCGATCTAGT TGCCGGATGT 39 AAGTCCAAAA AGACTAAGCG CATTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 20861 |||||||||| ||||||| || | |||||||| |||||||||| |||||||||| |||||||||| AAGTCCAAAA AGACTAATCG CGTTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 99 GTCAAGGTAT TTTATTTCAC TATTGTCTTT ATAGATTTAG TGCATTTTTG GTTACTATAC 20801 |||||| GTCAAG.... .......... .......... .......... .......... .......... 105 TGAGAATTGG ATGTTTAATT GTGTGAATAA TAGTTGTACC GATTTCTATC ACGGAGGACT 20741 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TTGTACC GATTTCTATC ACGGAGGACT 132 GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT CAATAAAGCT 20681 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAATAT CAATAAAGCT 192 CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AGGTATTTTA TTCATTCATT 20621 |||||||||| |||||||||| |||||||||| |||||||||| || CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AG........ .......... 234 TTAGCTTTGT TTCACCTTAC ACTGTTTGGA TAGTTTCATA ATGTTGTATT GATTGTATCA 20561 .......... .......... .......... .......... .......... .......... 234 TTTTATGTCG TTGTGTAATA TTATGATCAA TAATTTGAAT TATAAACTTA CAAGTAAATA 20501 .......... .......... .......... .......... .......... .......... 234 GCATACAGTG TAGAGCTAGA CCTATCTAAT GTGCCTTTAT TTAGTGTTAC CATACAATAA 20441 .......... .......... .......... .......... .......... .......... 234 AATTTGTATA ACAATCAAAC TAACAGTTAA TTTATCCAAC AACACAATGA AATACAATGT 20381 .......... .......... .......... .......... .......... .......... 234 AACAACCATC CAAACATGCC TGCTAGTGAT CTTTGATTGG ACACATCTAC AGCGAGCAGT 20321 .......... .......... .......... .......... .......... .......... 234 TATCAAAATA TTCTTGCTTT ATACTAGCAT CGTTAAATTG TTAATGGTAT TAACGACGTC 20261 .......... .......... .......... .......... .......... .......... 234 CTGAGTAGCA TTTATGTGAA TGAAATTGCT AAAAAGTAGT AATATGCAGC GATTAGGACT 20201 .......... .......... .......... .......... .......... .......... 234 AAAGGAGTGA GGAATTCACA TATCAGAGTG TACAATATAG CTTAACACTT GGGGGCCATT 20141 .......... .......... .......... .......... .......... .......... 234 TATATGCCGG ACAGGAATAT AGATAGTCTT GTGATAGAAA TTAACTACTG CGTATTTCCT 20081 .......... .......... .......... .......... .......... .......... 234 TTTTTGGTTA CTTATCCTAG GATGACTTAT ATTCGCTGTG ATAAGTTATC CATTCTAGTG 20021 .......... .......... .......... .......... .......... .......... 234 GATGGATTAA TACAAGTATC AGGATTACTA TGAAAATGGA AAAAATACTC CCAAGGTTGC 19961 .......... .......... .......... .......... .......... .......... 234 TCAAAACACT TTTTCTATTG AAGAAGGTGG AGGGTTATCT TTGTATACAA CTTTTCCGAA 19901 .......... .......... .......... .......... .......... .......... 234 TGTCCCTTTT TTTATTTCTT ATCCTACATT GTATAAAGTG ATGCATAATT TTGCATATAC 19841 .......... .......... .......... .......... .......... .......... 234 AGCAAAGTTA TGTCCCATGA TTATTTATGC AATGCATAAT CTATTCCTCA ACCATGCAGA 19781 .......... .......... .......... .......... .......... .......... 234 GATTTATATT AGAATTGAAA TGTTAGATCT GTAATCAGAG TATGTTCCAG GATTGTTTGT 19721 .......... .......... .......... .......... .......... .......... 234 TCTTGTACAG CAAAGTAAAT AACCCTTGAT ATTACTGAAG TACTATACAG TTTATCTGAA 19661 .......... .......... .......... .......... .......... .......... 234 TTGGCTTGTG TATGATGATG ATAGGAGGAC AATATTGCTG TTGTTGTTGG GACTGTTACC 19601 |||||| |||||||||| |||||| ||| |||||||||| .......... .......... ....GAGGAC AATATTGCTG TTGTTGATGG GACTGTTACC 270 GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 19541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 330 ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 19481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 390 CTCAGAGCCC CTCTTGGGCA GAACACTGTA CGGAACTTCT CTCTCTCATC AGTTTGCATT 19421 |||||||||| |||||||||| ||||||| CTCAGAGCCC CTCTTGGGCA GAACACT... .......... .......... .......... 417 TTTATGCCTT TTCTTTCATC AATCAAGTGA ATAATTAGAG AATATGCTGT AGTGCTCTTC 19361 .......... .......... .......... .......... .......... .......... 417 ACTAGTATAT AATAACAAAC CGAGGTGTTT TTAGAATTGT GGTTTGAATC TCGTCCTGCA 19301 .......... .......... .......... .......... .......... .......... 417 TAGGAAATGA TTATGTATTC ATGGTAGAGG TAACATTGGC TAGTCATTTG TTTTGTAATG 19241 .......... .......... .......... .......... .......... .......... 417 CTTTCTTGAT CAGGTTTTGC TTAGGGGTCC AAAGAACTCA AGGGAGGCCG TTAAGCACTT 19181 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTTTTGC TTAGGGGTCC AAAGAACTCA AGGGAGGCCG TTAAGCACTT 464 TGGTAAAGCA CCTGGTGTCC CACACAGCCA CACAAAGCCT TATGTTCGCG CAAAGGGAAG 19121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTAAAGCA CCTGGTGTCC CACACAGCCA CACAAAGCCT TATGTTCGCG CAAAGGGAAG 524 GAAGTTTGAG CGAG 19107 |||||||||| |||| GAAGTTTGAG CGAG 538 hqPGS_C09HBa0278J12.1-_SGN-E307542+ (21040 21028,20944 20855,20767 20639,19636 19454,19227 19107) ******************************************************************************** EST sequence 362 +strand 582 n (File: SGN-E257615+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GAGGACAATA TTGCTGTTGT 301 TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA AGGTTACTGC 361 ATTGAGATTC ACGGAAACAG CTAGAGCTAG GATTGAGAAG GCTGGAGGAG AATGTTTGAC 421 CTTTGATCAG CTTGCTCTCA GAGCCCCTCT TGGGCAGAAC ACTGTTTTGC TTAGGGGTCC 481 AAAGAACTCA AGGGAGGCCG TTAAGCACTT TGGTAAAGCA CCTGGTGTCC CACACAGCCA 541 CACAAAGCCT TATGTTCGCG CAAAGGGAAG GAAGTTTGAG CG Predicted gene structure (within gDNA segment 21688 to 18499): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 152 280 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 281 463 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19109 ( 119 n); cDNA 464 582 ( 119 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E257615+ 1.000 582 1.000 C PGS_C09HBa0278J12.1-_SGN-E257615+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19109) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||||| |||||||||| TCACGTTTGG TTACTTACAT GACTGGAAAG .......... .......... .......... 280 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 280 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 280 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 280 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 280 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 280 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 280 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 280 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 280 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 280 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 280 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 280 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 280 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 280 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 280 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 280 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 280 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 328 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 388 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 448 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 463 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 463 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 463 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 463 GGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 19169 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 522 TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 19109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCGCA AAGGGAAGGA AGTTTGAGCG 582 hqPGS_C09HBa0278J12.1-_SGN-E257615+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19109) ******************************************************************************** EST sequence 188 +strand 557 n (File: SGN-E203154+) 1 GCACGAGGGA AAGTAGAAGC AGCAGGCGGA GCATCATGGG TATCGATCTA GTTGCCGGAG 61 GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA CGATGTTTAT CTCAAGCTTC 121 TCGTCAAGTT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT GCTGTGATAC 181 TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA CGTTTGGTTA 241 CTTACATGAC TGGAAAGGAG GACAATATTG CTGTTGTTGT TGGGACTGTT ACCGATGATG 301 TTCGAGCTTA TGAAGTCCCA AAAATCAAGG TTACTGCATT GAGATTCACG GAAACAGCTA 361 GAGCTAGGAT TGAGAAGGCT GGAGGAGAAT GTTTGACCTT TGATCAGCTT GCTCTCAGAG 421 CCCCTCTTGG GCAGAACACT GTTTTGCTTA AGGGTCCAAA GAACTCAAGG GAGGCCGTTA 481 AGCACTTTGG TAAAGCACCT GGTGTCCCAC ACAGCCACAC AAAGCCTTAT GTTCGCGCAA 541 AGGGAATGAA GTTTGAG Predicted gene structure (within gDNA segment 21728 to 18402): Exon 1 21062 21028 ( 35 n); cDNA 4 38 ( 35 n); score: 0.943 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 39 128 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 129 257 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 258 440 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 5 19227 19111 ( 117 n); cDNA 441 557 ( 117 n); score: 0.983 MATCH C09HBa0278J12.1- SGN-E203154+ 0.996 554 0.995 C PGS_C09HBa0278J12.1-_SGN-E203154+ (21062 21028,20944 20855,20767 20639,19636 19454,19227 19111) Alignment (genomic DNA sequence = upper lines): CGGAGGAAAG TAGAAGCAGC AGGCGGAGCA TCATGGTGAA TATTTTTTTT TAGAATATTC 21003 || |||||| |||||||||| |||||||||| ||||| CGAGGGAAAG TAGAAGCAGC AGGCGGAGCA TCATG..... .......... .......... 38 CTGCATTTGT TTTCACGGAC GCCATAGCTT GATTTTGTTA TTTTGATTTT CTATTTAGGG 20943 || .......... .......... .......... .......... .......... ........GG 40 TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA 20883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA 100 CGATGTTTAT CTCAAGCTTC TCGTCAAGGT ATTTTATTTC ACTATTGTCT TTATAGATTT 20823 |||||||||| |||||||||| |||||||| CGATGTTTAT CTCAAGCTTC TCGTCAAG.. .......... .......... .......... 128 AGTGCATTTT TGGTTACTAT ACTGAGAATT GGATGTTTAA TTGTGTGAAT AATAGTTGTA 20763 ||||| .......... .......... .......... .......... .......... .....TTGTA 133 CCGATTTCTA TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT 20703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATTTCTA TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT 193 CATGAGCAAG ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG 20643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGCAAG ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG 253 AAAGGTATTT TATTCATTCA TTTTAGCTTT GTTTCACCTT ACACTGTTTG GATAGTTTCA 20583 |||| AAAG...... .......... .......... .......... .......... .......... 257 TAATGTTGTA TTGATTGTAT CATTTTATGT CGTTGTGTAA TATTATGATC AATAATTTGA 20523 .......... .......... .......... .......... .......... .......... 257 ATTATAAACT TACAAGTAAA TAGCATACAG TGTAGAGCTA GACCTATCTA ATGTGCCTTT 20463 .......... .......... .......... .......... .......... .......... 257 ATTTAGTGTT ACCATACAAT AAAATTTGTA TAACAATCAA ACTAACAGTT AATTTATCCA 20403 .......... .......... .......... .......... .......... .......... 257 ACAACACAAT GAAATACAAT GTAACAACCA TCCAAACATG CCTGCTAGTG ATCTTTGATT 20343 .......... .......... .......... .......... .......... .......... 257 GGACACATCT ACAGCGAGCA GTTATCAAAA TATTCTTGCT TTATACTAGC ATCGTTAAAT 20283 .......... .......... .......... .......... .......... .......... 257 TGTTAATGGT ATTAACGACG TCCTGAGTAG CATTTATGTG AATGAAATTG CTAAAAAGTA 20223 .......... .......... .......... .......... .......... .......... 257 GTAATATGCA GCGATTAGGA CTAAAGGAGT GAGGAATTCA CATATCAGAG TGTACAATAT 20163 .......... .......... .......... .......... .......... .......... 257 AGCTTAACAC TTGGGGGCCA TTTATATGCC GGACAGGAAT ATAGATAGTC TTGTGATAGA 20103 .......... .......... .......... .......... .......... .......... 257 AATTAACTAC TGCGTATTTC CTTTTTTGGT TACTTATCCT AGGATGACTT ATATTCGCTG 20043 .......... .......... .......... .......... .......... .......... 257 TGATAAGTTA TCCATTCTAG TGGATGGATT AATACAAGTA TCAGGATTAC TATGAAAATG 19983 .......... .......... .......... .......... .......... .......... 257 GAAAAAATAC TCCCAAGGTT GCTCAAAACA CTTTTTCTAT TGAAGAAGGT GGAGGGTTAT 19923 .......... .......... .......... .......... .......... .......... 257 CTTTGTATAC AACTTTTCCG AATGTCCCTT TTTTTATTTC TTATCCTACA TTGTATAAAG 19863 .......... .......... .......... .......... .......... .......... 257 TGATGCATAA TTTTGCATAT ACAGCAAAGT TATGTCCCAT GATTATTTAT GCAATGCATA 19803 .......... .......... .......... .......... .......... .......... 257 ATCTATTCCT CAACCATGCA GAGATTTATA TTAGAATTGA AATGTTAGAT CTGTAATCAG 19743 .......... .......... .......... .......... .......... .......... 257 AGTATGTTCC AGGATTGTTT GTTCTTGTAC AGCAAAGTAA ATAACCCTTG ATATTACTGA 19683 .......... .......... .......... .......... .......... .......... 257 AGTACTATAC AGTTTATCTG AATTGGCTTG TGTATGATGA TGATAGGAGG ACAATATTGC 19623 |||| |||||||||| .......... .......... .......... .......... ......GAGG ACAATATTGC 271 TGTTGTTGTT GGGACTGTTA CCGATGATGT TCGAGCTTAT GAAGTCCCAA AAATCAAGGT 19563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTTGTT GGGACTGTTA CCGATGATGT TCGAGCTTAT GAAGTCCCAA AAATCAAGGT 331 TACTGCATTG AGATTCACGG AAACAGCTAG AGCTAGGATT GAGAAGGCTG GAGGAGAATG 19503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGCATTG AGATTCACGG AAACAGCTAG AGCTAGGATT GAGAAGGCTG GAGGAGAATG 391 TTTGACCTTT GATCAGCTTG CTCTCAGAGC CCCTCTTGGG CAGAACACTG TACGGAACTT 19443 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTGACCTTT GATCAGCTTG CTCTCAGAGC CCCTCTTGGG CAGAACACT. .......... 440 CTCTCTCTCA TCAGTTTGCA TTTTTATGCC TTTTCTTTCA TCAATCAAGT GAATAATTAG 19383 .......... .......... .......... .......... .......... .......... 440 AGAATATGCT GTAGTGCTCT TCACTAGTAT ATAATAACAA ACCGAGGTGT TTTTAGAATT 19323 .......... .......... .......... .......... .......... .......... 440 GTGGTTTGAA TCTCGTCCTG CATAGGAAAT GATTATGTAT TCATGGTAGA GGTAACATTG 19263 .......... .......... .......... .......... .......... .......... 440 GCTAGTCATT TGTTTTGTAA TGCTTTCTTG ATCAGGTTTT GCTTAGGGGT CCAAAGAACT 19203 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GTTTT GCTTAAGGGT CCAAAGAACT 465 CAAGGGAGGC CGTTAAGCAC TTTGGTAAAG CACCTGGTGT CCCACACAGC CACACAAAGC 19143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGGAGGC CGTTAAGCAC TTTGGTAAAG CACCTGGTGT CCCACACAGC CACACAAAGC 525 CTTATGTTCG CGCAAAGGGA AGGAAGTTTG AG 19111 |||||||||| |||||||||| | |||||||| || CTTATGTTCG CGCAAAGGGA ATGAAGTTTG AG 557 hqPGS_C09HBa0278J12.1-_SGN-E203154+ (21062 21028,20944 20855,20767 20639,19636 19454,19227 19111) ******************************************************************************** EST sequence 214 +strand 560 n (File: SGN-E270303+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GAGGACAATA TTGCTGTTGT 301 TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA AGGTTACTGC 361 ATTGAGATTC ACGGAAACAG CTAGAGCTAG GATTGAGAAG GCTGGAGGAG AATGTTTGAC 421 CTTTGATCAG CTTGCTCTCA GAGCCCCTCT TGGGCAGAAC ACTGTTTTGC TTAGGGGTCC 481 AAAGAACTCA AGGGAGGCCG TTAAGCACTT TGGTAAAGCA CCTGGTGTCC CACACAGCCA 541 CACAAAGCCT TATGTTCGCG Predicted gene structure (within gDNA segment 21688 to 18521): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 152 280 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 281 463 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19131 ( 97 n); cDNA 464 560 ( 97 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E270303+ 1.000 560 1.000 C PGS_C09HBa0278J12.1-_SGN-E270303+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19131) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||||| |||||||||| TCACGTTTGG TTACTTACAT GACTGGAAAG .......... .......... .......... 280 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 280 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 280 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 280 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 280 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 280 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 280 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 280 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 280 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 280 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 280 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 280 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 280 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 280 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 280 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 280 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 280 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 328 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 388 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 448 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 463 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 463 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 463 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 463 GGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 19169 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 522 TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCG 19131 |||||||||| |||||||||| |||||||||| |||||||| TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTTCGCG 560 hqPGS_C09HBa0278J12.1-_SGN-E270303+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19131) ******************************************************************************** EST sequence 227 +strand 549 n (File: SGN-E337829+) 1 AGCAGCATGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GGTATCGATC 61 TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC GACGATGTTT 121 ATCTCAAGCT TCTCGTCAAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA 181 ATGCTGTGAT ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT 241 CACGTTTGGT TACTTACATG ACTGGAAAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG 301 TTACCGATGA TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA 361 CGGAAACAGC TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC 421 TTGCTCTCAG AGCCCCTCTT GGGCAGAACA CTGTTTTGCT TAGGGGTCCA AAGAACTCAA 481 AGGAGGCCGT TAAGCACTTT GGTAAAGCAC CTGGTGTCCC ACACAGCCAC ACAAAGCCTT 541 ATGTTCGCG Predicted gene structure (within gDNA segment 21749 to 18521): Exon 1 21077 21028 ( 50 n); cDNA 1 50 ( 50 n); score: 0.980 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 51 140 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 141 269 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 270 452 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 5 19227 19131 ( 97 n); cDNA 453 549 ( 97 n); score: 0.990 MATCH C09HBa0278J12.1- SGN-E337829+ 0.996 549 1.000 C PGS_C09HBa0278J12.1-_SGN-E337829+ (21077 21028,20944 20855,20767 20639,19636 19454,19227 19131) Alignment (genomic DNA sequence = upper lines): AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GTGAATATTT 21018 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCATGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG .......... 50 TTTTTTAGAA TATTCCTGCA TTTGTTTTCA CGGACGCCAT AGCTTGATTT TGTTATTTTG 20958 .......... .......... .......... .......... .......... .......... 50 ATTTTCTATT TAGGGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 20898 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 97 TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGGTATTTT ATTTCACTAT 20838 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAG....... .......... 140 TGTCTTTATA GATTTAGTGC ATTTTTGGTT ACTATACTGA GAATTGGATG TTTAATTGTG 20778 .......... .......... .......... .......... .......... .......... 140 TGAATAATAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 20718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 190 ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 20658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 250 TACTTACATG ACTGGAAAGG TATTTTATTC ATTCATTTTA GCTTTGTTTC ACCTTACACT 20598 |||||||||| ||||||||| TACTTACATG ACTGGAAAG. .......... .......... .......... .......... 269 GTTTGGATAG TTTCATAATG TTGTATTGAT TGTATCATTT TATGTCGTTG TGTAATATTA 20538 .......... .......... .......... .......... .......... .......... 269 TGATCAATAA TTTGAATTAT AAACTTACAA GTAAATAGCA TACAGTGTAG AGCTAGACCT 20478 .......... .......... .......... .......... .......... .......... 269 ATCTAATGTG CCTTTATTTA GTGTTACCAT ACAATAAAAT TTGTATAACA ATCAAACTAA 20418 .......... .......... .......... .......... .......... .......... 269 CAGTTAATTT ATCCAACAAC ACAATGAAAT ACAATGTAAC AACCATCCAA ACATGCCTGC 20358 .......... .......... .......... .......... .......... .......... 269 TAGTGATCTT TGATTGGACA CATCTACAGC GAGCAGTTAT CAAAATATTC TTGCTTTATA 20298 .......... .......... .......... .......... .......... .......... 269 CTAGCATCGT TAAATTGTTA ATGGTATTAA CGACGTCCTG AGTAGCATTT ATGTGAATGA 20238 .......... .......... .......... .......... .......... .......... 269 AATTGCTAAA AAGTAGTAAT ATGCAGCGAT TAGGACTAAA GGAGTGAGGA ATTCACATAT 20178 .......... .......... .......... .......... .......... .......... 269 CAGAGTGTAC AATATAGCTT AACACTTGGG GGCCATTTAT ATGCCGGACA GGAATATAGA 20118 .......... .......... .......... .......... .......... .......... 269 TAGTCTTGTG ATAGAAATTA ACTACTGCGT ATTTCCTTTT TTGGTTACTT ATCCTAGGAT 20058 .......... .......... .......... .......... .......... .......... 269 GACTTATATT CGCTGTGATA AGTTATCCAT TCTAGTGGAT GGATTAATAC AAGTATCAGG 19998 .......... .......... .......... .......... .......... .......... 269 ATTACTATGA AAATGGAAAA AATACTCCCA AGGTTGCTCA AAACACTTTT TCTATTGAAG 19938 .......... .......... .......... .......... .......... .......... 269 AAGGTGGAGG GTTATCTTTG TATACAACTT TTCCGAATGT CCCTTTTTTT ATTTCTTATC 19878 .......... .......... .......... .......... .......... .......... 269 CTACATTGTA TAAAGTGATG CATAATTTTG CATATACAGC AAAGTTATGT CCCATGATTA 19818 .......... .......... .......... .......... .......... .......... 269 TTTATGCAAT GCATAATCTA TTCCTCAACC ATGCAGAGAT TTATATTAGA ATTGAAATGT 19758 .......... .......... .......... .......... .......... .......... 269 TAGATCTGTA ATCAGAGTAT GTTCCAGGAT TGTTTGTTCT TGTACAGCAA AGTAAATAAC 19698 .......... .......... .......... .......... .......... .......... 269 CCTTGATATT ACTGAAGTAC TATACAGTTT ATCTGAATTG GCTTGTGTAT GATGATGATA 19638 .......... .......... .......... .......... .......... .......... 269 GGAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 19578 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 328 CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 19518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 388 GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 19458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 448 CACTGTACGG AACTTCTCTC TCTCATCAGT TTGCATTTTT ATGCCTTTTC TTTCATCAAT 19398 |||| CACT...... .......... .......... .......... .......... .......... 452 CAAGTGAATA ATTAGAGAAT ATGCTGTAGT GCTCTTCACT AGTATATAAT AACAAACCGA 19338 .......... .......... .......... .......... .......... .......... 452 GGTGTTTTTA GAATTGTGGT TTGAATCTCG TCCTGCATAG GAAATGATTA TGTATTCATG 19278 .......... .......... .......... .......... .......... .......... 452 GTAGAGGTAA CATTGGCTAG TCATTTGTTT TGTAATGCTT TCTTGATCAG GTTTTGCTTA 19218 |||||||||| .......... .......... .......... .......... .......... GTTTTGCTTA 462 GGGGTCCAAA GAACTCAAGG GAGGCCGTTA AGCACTTTGG TAAAGCACCT GGTGTCCCAC 19158 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GGGGTCCAAA GAACTCAAAG GAGGCCGTTA AGCACTTTGG TAAAGCACCT GGTGTCCCAC 522 ACAGCCACAC AAAGCCTTAT GTTCGCG 19131 |||||||||| |||||||||| ||||||| ACAGCCACAC AAAGCCTTAT GTTCGCG 549 hqPGS_C09HBa0278J12.1-_SGN-E337829+ (21077 21028,20944 20855,20767 20639,19636 19454,19227 19131) ******************************************************************************** EST sequence 358 +strand 556 n (File: SGN-E257380+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GAGGACAATA TTGCTGTTGT 301 TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA AGGTTACTGC 361 ATTGAGATTC ACGGAAACAG CTATAGCTAG GATTGAGAAA GCTGGAGGAG AATGTTTGAC 421 CTTTGATCAG CTTGCTCTCA CAGCCCCTCT TGGGCAGAAC ACTGTTTTGC TTATGGGTCC 481 AAAGAACTCA AGGGAGGCCG TTAAGCACTT TGGTAAAGCA CCTGGTGTGC CACACAGCCA 541 CACAAAGCCT TATGTT Predicted gene structure (within gDNA segment 21688 to 18525): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 152 280 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 281 463 ( 183 n); score: 0.984 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 0.98), Pa: 0.995 (s: 0.98) Exon 5 19227 19135 ( 93 n); cDNA 464 556 ( 93 n); score: 0.978 MATCH C09HBa0278J12.1- SGN-E257380+ 0.991 556 1.000 C PGS_C09HBa0278J12.1-_SGN-E257380+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19135) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||||| |||||||||| TCACGTTTGG TTACTTACAT GACTGGAAAG .......... .......... .......... 280 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 280 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 280 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 280 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 280 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 280 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 280 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 280 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 280 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 280 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 280 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 280 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 280 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 280 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 280 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 280 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 280 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 328 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTATAGCT 388 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| || ||||||| AGGATTGAGA AAGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CACAGCCCCT 448 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 463 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 463 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 463 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 463 GGTTTTGCTT AGGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 19169 ||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTTTGCTT ATGGGTCCAA AGAACTCAAG GGAGGCCGTT AAGCACTTTG GTAAAGCACC 522 TGGTGTCCCA CACAGCCACA CAAAGCCTTA TGTT 19135 |||||| ||| |||||||||| |||||||||| |||| TGGTGTGCCA CACAGCCACA CAAAGCCTTA TGTT 556 hqPGS_C09HBa0278J12.1-_SGN-E257380+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19135) ******************************************************************************** EST sequence 265 +strand 544 n (File: SGN-E291468+) 1 AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA GCATCATGGG 61 TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA 121 CGATGTTTAT CTCAAGCTTC TCGTCAAGTT GTACCGATTT CTATCACGGA GGACTGGTAG 181 TAAGTTCAAT GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT 241 GTCTCTATCA CGTTTGGTTA CTTACATGAC TGGAAAGGAG GACAATATTG CTGTTGTTGT 301 TGGGACTGTT ACCGATGATG TTCGAGCTTA TGAAGTCCCA AAAATCAAGG TTACTGCATT 361 GAGATTCACG GAAACAGCTA GAGCTAGGAT TGAGAAGGCT GGAGGAGAAT GTTTGACCTT 421 TGATCAGCTT GCTCTCAGAG CCCCTCTTGG GCAGAACACT GTTTTGCTTA GGGGTCCAAA 481 GAACTCAAGG GAGGCCGTTA AGCACTTTGG TAAAGCACCT GGTGTCCCAC ACAGCCACAC 541 AAAG Predicted gene structure (within gDNA segment 21685 to 18534): Exon 1 21085 21028 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 59 148 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 149 277 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 278 460 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 19227 19144 ( 84 n); cDNA 461 544 ( 84 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E291468+ 1.000 544 1.000 C PGS_C09HBa0278J12.1-_SGN-E291468+ (21085 21028,20944 20855,20767 20639,19636 19454,19227 19144) Alignment (genomic DNA sequence = upper lines): AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA GCATCATGGT 21026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA GCATCATG.. 58 GAATATTTTT TTTTAGAATA TTCCTGCATT TGTTTTCACG GACGCCATAG CTTGATTTTG 20966 .......... .......... .......... .......... .......... .......... 58 TTATTTTGAT TTTCTATTTA GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT 20906 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT 97 AAGCGCATTG CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA GGTATTTTAT 20846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAGCGCATTG CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA G......... 148 TTCACTATTG TCTTTATAGA TTTAGTGCAT TTTTGGTTAC TATACTGAGA ATTGGATGTT 20786 .......... .......... .......... .......... .......... .......... 148 TAATTGTGTG AATAATAGTT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT 20726 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT 190 GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA 20666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA 250 CGTTTGGTTA CTTACATGAC TGGAAAGGTA TTTTATTCAT TCATTTTAGC TTTGTTTCAC 20606 |||||||||| |||||||||| ||||||| CGTTTGGTTA CTTACATGAC TGGAAAG... .......... .......... .......... 277 CTTACACTGT TTGGATAGTT TCATAATGTT GTATTGATTG TATCATTTTA TGTCGTTGTG 20546 .......... .......... .......... .......... .......... .......... 277 TAATATTATG ATCAATAATT TGAATTATAA ACTTACAAGT AAATAGCATA CAGTGTAGAG 20486 .......... .......... .......... .......... .......... .......... 277 CTAGACCTAT CTAATGTGCC TTTATTTAGT GTTACCATAC AATAAAATTT GTATAACAAT 20426 .......... .......... .......... .......... .......... .......... 277 CAAACTAACA GTTAATTTAT CCAACAACAC AATGAAATAC AATGTAACAA CCATCCAAAC 20366 .......... .......... .......... .......... .......... .......... 277 ATGCCTGCTA GTGATCTTTG ATTGGACACA TCTACAGCGA GCAGTTATCA AAATATTCTT 20306 .......... .......... .......... .......... .......... .......... 277 GCTTTATACT AGCATCGTTA AATTGTTAAT GGTATTAACG ACGTCCTGAG TAGCATTTAT 20246 .......... .......... .......... .......... .......... .......... 277 GTGAATGAAA TTGCTAAAAA GTAGTAATAT GCAGCGATTA GGACTAAAGG AGTGAGGAAT 20186 .......... .......... .......... .......... .......... .......... 277 TCACATATCA GAGTGTACAA TATAGCTTAA CACTTGGGGG CCATTTATAT GCCGGACAGG 20126 .......... .......... .......... .......... .......... .......... 277 AATATAGATA GTCTTGTGAT AGAAATTAAC TACTGCGTAT TTCCTTTTTT GGTTACTTAT 20066 .......... .......... .......... .......... .......... .......... 277 CCTAGGATGA CTTATATTCG CTGTGATAAG TTATCCATTC TAGTGGATGG ATTAATACAA 20006 .......... .......... .......... .......... .......... .......... 277 GTATCAGGAT TACTATGAAA ATGGAAAAAA TACTCCCAAG GTTGCTCAAA ACACTTTTTC 19946 .......... .......... .......... .......... .......... .......... 277 TATTGAAGAA GGTGGAGGGT TATCTTTGTA TACAACTTTT CCGAATGTCC CTTTTTTTAT 19886 .......... .......... .......... .......... .......... .......... 277 TTCTTATCCT ACATTGTATA AAGTGATGCA TAATTTTGCA TATACAGCAA AGTTATGTCC 19826 .......... .......... .......... .......... .......... .......... 277 CATGATTATT TATGCAATGC ATAATCTATT CCTCAACCAT GCAGAGATTT ATATTAGAAT 19766 .......... .......... .......... .......... .......... .......... 277 TGAAATGTTA GATCTGTAAT CAGAGTATGT TCCAGGATTG TTTGTTCTTG TACAGCAAAG 19706 .......... .......... .......... .......... .......... .......... 277 TAAATAACCC TTGATATTAC TGAAGTACTA TACAGTTTAT CTGAATTGGC TTGTGTATGA 19646 .......... .......... .......... .......... .......... .......... 277 TGATGATAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA TGTTCGAGCT 19586 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA TGTTCGAGCT 328 TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC TAGAGCTAGG 19526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC TAGAGCTAGG 388 ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC TTGCTCTCAG AGCCCCTCTT 19466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC TTGCTCTCAG AGCCCCTCTT 448 GGGCAGAACA CTGTACGGAA CTTCTCTCTC TCATCAGTTT GCATTTTTAT GCCTTTTCTT 19406 |||||||||| || GGGCAGAACA CT........ .......... .......... .......... .......... 460 TCATCAATCA AGTGAATAAT TAGAGAATAT GCTGTAGTGC TCTTCACTAG TATATAATAA 19346 .......... .......... .......... .......... .......... .......... 460 CAAACCGAGG TGTTTTTAGA ATTGTGGTTT GAATCTCGTC CTGCATAGGA AATGATTATG 19286 .......... .......... .......... .......... .......... .......... 460 TATTCATGGT AGAGGTAACA TTGGCTAGTC ATTTGTTTTG TAATGCTTTC TTGATCAGGT 19226 || .......... .......... .......... .......... .......... ........GT 462 TTTGCTTAGG GGTCCAAAGA ACTCAAGGGA GGCCGTTAAG CACTTTGGTA AAGCACCTGG 19166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTTAGG GGTCCAAAGA ACTCAAGGGA GGCCGTTAAG CACTTTGGTA AAGCACCTGG 522 TGTCCCACAC AGCCACACAA AG 19144 |||||||||| |||||||||| || TGTCCCACAC AGCCACACAA AG 544 hqPGS_C09HBa0278J12.1-_SGN-E291468+ (21085 21028,20944 20855,20767 20639,19636 19454,19227 19144) ******************************************************************************** EST sequence 355 +strand 749 n (File: SGN-E343275+) 1 CGAGTTTTTT TTTTTTCCAT TCTCCGAACA GAAAAACCTA TCAGCAGCAG GCGGCGGCGG 61 AGGAAAGTAG AAGCAGCAGG CGGAGCATCA TGGGTATCGA TCTAGTTGCC GGAGGTAAGT 121 CCAAAAAGAC TAAGCGCATT GCACCAAAAT CCGACGATGT TTATCTCAAG CTTCTCGTCA 181 AGTTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT CAATGCTGTG ATACTGAAGA 241 GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT ATCACGTTTG GTTACTTACA 301 TGACTGGAAA GGAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG 361 CTTATGAAGT CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA 421 GGATTGAGAA GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC 481 TTGGGCAGAA CACTGTACGG AACTTCTCTC TCTCATCAGT TTGCATTTTT ATGCCTTTTC 541 TTTCATCAAT CAAGTGAATA ATTAGAGAAT ATGCTGTAGT GCTCTTCACT AGTATATAAT 601 AACAAACCGA GGTGTTTTTA GAATTGTGGT TTGAATCTCG TCCTGCATAG GAAATGATTA 661 TGTATTCATG GTAGAGGTAA CATTGGCTAG TCATTTGTTT TGTAATGCTT TCTTGATCAG 721 GTTTTGCTTA GGGGTCCAAA GAACTCAAG Predicted gene structure (within gDNA segment 21818 to 18589): Exon 1 21108 21028 ( 81 n); cDNA 12 92 ( 81 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 93 182 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 183 311 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19199 ( 438 n); cDNA 312 749 ( 438 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E343275+ 1.000 738 0.985 C PGS_C09HBa0278J12.1-_SGN-E343275+ (21108 21028,20944 20855,20767 20639,19636 19199) Alignment (genomic DNA sequence = upper lines): TTTTTCCATT CTCCGAACAG AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA 21049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCCATT CTCCGAACAG AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA 71 AGCAGCAGGC GGAGCATCAT GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC 20989 |||||||||| |||||||||| | AGCAGCAGGC GGAGCATCAT G......... .......... .......... .......... 92 ACGGACGCCA TAGCTTGATT TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG 20929 |||||| |||||||||| .......... .......... .......... .......... ....GGTATC GATCTAGTTG 108 CCGGAGGTAA GTCCAAAAAG ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA 20869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGGTAA GTCCAAAAAG ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA 168 AGCTTCTCGT CAAGGTATTT TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT 20809 |||||||||| |||| AGCTTCTCGT CAAG...... .......... .......... .......... .......... 182 TACTATACTG AGAATTGGAT GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC 20749 ||||||||| |||||||||| .......... .......... .......... .......... .TTGTACCGA TTTCTATCAC 201 GGAGGACTGG TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA 20689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGACTGG TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA 261 ATAAAGCTCC ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT 20629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGCTCC ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG .......... 311 CATTCATTTT AGCTTTGTTT CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA 20569 .......... .......... .......... .......... .......... .......... 311 TTGTATCATT TTATGTCGTT GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA 20509 .......... .......... .......... .......... .......... .......... 311 AGTAAATAGC ATACAGTGTA GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA 20449 .......... .......... .......... .......... .......... .......... 311 TACAATAAAA TTTGTATAAC AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA 20389 .......... .......... .......... .......... .......... .......... 311 TACAATGTAA CAACCATCCA AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG 20329 .......... .......... .......... .......... .......... .......... 311 CGAGCAGTTA TCAAAATATT CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA 20269 .......... .......... .......... .......... .......... .......... 311 ACGACGTCCT GAGTAGCATT TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA 20209 .......... .......... .......... .......... .......... .......... 311 TTAGGACTAA AGGAGTGAGG AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG 20149 .......... .......... .......... .......... .......... .......... 311 GGGCCATTTA TATGCCGGAC AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG 20089 .......... .......... .......... .......... .......... .......... 311 TATTTCCTTT TTTGGTTACT TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA 20029 .......... .......... .......... .......... .......... .......... 311 TTCTAGTGGA TGGATTAATA CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC 19969 .......... .......... .......... .......... .......... .......... 311 AAGGTTGCTC AAAACACTTT TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT 19909 .......... .......... .......... .......... .......... .......... 311 TTTCCGAATG TCCCTTTTTT TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT 19849 .......... .......... .......... .......... .......... .......... 311 GCATATACAG CAAAGTTATG TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC 19789 .......... .......... .......... .......... .......... .......... 311 CATGCAGAGA TTTATATTAG AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA 19729 .......... .......... .......... .......... .......... .......... 311 TTGTTTGTTC TTGTACAGCA AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT 19669 .......... .......... .......... .......... .......... .......... 311 TATCTGAATT GGCTTGTGTA TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA 19609 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA 339 CTGTTACCGA TGATGTTCGA GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT 19549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTACCGA TGATGTTCGA GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT 399 TCACGGAAAC AGCTAGAGCT AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC 19489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACGGAAAC AGCTAGAGCT AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC 459 AGCTTGCTCT CAGAGCCCCT CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG 19429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGCTCT CAGAGCCCCT CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG 519 TTTGCATTTT TATGCCTTTT CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG 19369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCATTTT TATGCCTTTT CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG 579 TGCTCTTCAC TAGTATATAA TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC 19309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCAC TAGTATATAA TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC 639 GTCCTGCATA GGAAATGATT ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT 19249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTGCATA GGAAATGATT ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT 699 TTGTAATGCT TTCTTGATCA GGTTTTGCTT AGGGGTCCAA AGAACTCAAG 19199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAATGCT TTCTTGATCA GGTTTTGCTT AGGGGTCCAA AGAACTCAAG 749 hqPGS_C09HBa0278J12.1-_SGN-E343275+ (21108 21028,20944 20855,20767 20639,19636 19199) ******************************************************************************** EST sequence 367 +strand 477 n (File: SGN-E257387+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCTGG AGGAAAGTAC AAGCAGCAGG CGGAGCATCA 61 TGGGTATCGA TCTAGTTGCC GGAGGTAAGT CCAAAAAGAC TAAGCGCATT GCACCAAAAT 121 CCGACGATGT TTATCTCAAG CTTCTCGTCA AGTTGTACCG ATTTCTATCA CGGAGGACTG 181 GTAGTAAGTT CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC GATAAAGCTC 241 CATTGTCTCT ATCACGTTTG GTTACTTACA TGACTGGAAA GGAGGACAAT ATTGCTGTTG 301 ATGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAAT CCCCAAAATC AACGCTACTG 361 CCTTGAGATT CACGGAAACA TCTATAGCTA GGATTGATAA AGCTGGAGGA GAATGTTTGA 421 CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA CACTGTTTTG CTTAAGG Predicted gene structure (within gDNA segment 21688 to 18732): Exon 1 21088 21028 ( 61 n); cDNA 1 62 ( 62 n); score: 0.943 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0.93), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 63 152 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 153 281 ( 129 n); score: 0.992 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 4 19636 19454 ( 183 n); cDNA 282 464 ( 183 n); score: 0.945 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0) Exon 5 19227 19215 ( 13 n); cDNA 465 477 ( 13 n); score: 0.923 MATCH C09HBa0278J12.1- SGN-E257387+ 0.969 476 0.998 C PGS_C09HBa0278J12.1-_SGN-E257387+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19215) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGC-GG AGGAAAGTAG AAGCAGCAGG CGGAGCATCA 21030 |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCTGG AGGAAAGTAC AAGCAGCAGG CGGAGCATCA 60 TGGTGAATAT TTTTTTTTAG AATATTCCTG CATTTGTTTT CACGGACGCC ATAGCTTGAT 20970 || TG........ .......... .......... .......... .......... .......... 62 TTTGTTATTT TGATTTTCTA TTTAGGGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 20910 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGTAT CGATCTAGTT GCCGGAGGTA AGTCCAAAAA 97 GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAGGTATT 20850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACTAAGCGC ATTGCACCAA AATCCGACGA TGTTTATCTC AAGCTTCTCG TCAAG..... 152 TTATTTCACT ATTGTCTTTA TAGATTTAGT GCATTTTTGG TTACTATACT GAGAATTGGA 20790 .......... .......... .......... .......... .......... .......... 152 TGTTTAATTG TGTGAATAAT AGTTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 20730 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTGTACCG ATTTCTATCA CGGAGGACTG GTAGTAAGTT 190 CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC AATAAAGCTC CATTGTCTCT 20670 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAATGCTGTG ATACTGAAGA GACTCTTCAT GAGCAAGATC GATAAAGCTC CATTGTCTCT 250 ATCACGTTTG GTTACTTACA TGACTGGAAA GGTATTTTAT TCATTCATTT TAGCTTTGTT 20610 |||||||||| |||||||||| |||||||||| | ATCACGTTTG GTTACTTACA TGACTGGAAA G......... .......... .......... 281 TCACCTTACA CTGTTTGGAT AGTTTCATAA TGTTGTATTG ATTGTATCAT TTTATGTCGT 20550 .......... .......... .......... .......... .......... .......... 281 TGTGTAATAT TATGATCAAT AATTTGAATT ATAAACTTAC AAGTAAATAG CATACAGTGT 20490 .......... .......... .......... .......... .......... .......... 281 AGAGCTAGAC CTATCTAATG TGCCTTTATT TAGTGTTACC ATACAATAAA ATTTGTATAA 20430 .......... .......... .......... .......... .......... .......... 281 CAATCAAACT AACAGTTAAT TTATCCAACA ACACAATGAA ATACAATGTA ACAACCATCC 20370 .......... .......... .......... .......... .......... .......... 281 AAACATGCCT GCTAGTGATC TTTGATTGGA CACATCTACA GCGAGCAGTT ATCAAAATAT 20310 .......... .......... .......... .......... .......... .......... 281 TCTTGCTTTA TACTAGCATC GTTAAATTGT TAATGGTATT AACGACGTCC TGAGTAGCAT 20250 .......... .......... .......... .......... .......... .......... 281 TTATGTGAAT GAAATTGCTA AAAAGTAGTA ATATGCAGCG ATTAGGACTA AAGGAGTGAG 20190 .......... .......... .......... .......... .......... .......... 281 GAATTCACAT ATCAGAGTGT ACAATATAGC TTAACACTTG GGGGCCATTT ATATGCCGGA 20130 .......... .......... .......... .......... .......... .......... 281 CAGGAATATA GATAGTCTTG TGATAGAAAT TAACTACTGC GTATTTCCTT TTTTGGTTAC 20070 .......... .......... .......... .......... .......... .......... 281 TTATCCTAGG ATGACTTATA TTCGCTGTGA TAAGTTATCC ATTCTAGTGG ATGGATTAAT 20010 .......... .......... .......... .......... .......... .......... 281 ACAAGTATCA GGATTACTAT GAAAATGGAA AAAATACTCC CAAGGTTGCT CAAAACACTT 19950 .......... .......... .......... .......... .......... .......... 281 TTTCTATTGA AGAAGGTGGA GGGTTATCTT TGTATACAAC TTTTCCGAAT GTCCCTTTTT 19890 .......... .......... .......... .......... .......... .......... 281 TTATTTCTTA TCCTACATTG TATAAAGTGA TGCATAATTT TGCATATACA GCAAAGTTAT 19830 .......... .......... .......... .......... .......... .......... 281 GTCCCATGAT TATTTATGCA ATGCATAATC TATTCCTCAA CCATGCAGAG ATTTATATTA 19770 .......... .......... .......... .......... .......... .......... 281 GAATTGAAAT GTTAGATCTG TAATCAGAGT ATGTTCCAGG ATTGTTTGTT CTTGTACAGC 19710 .......... .......... .......... .......... .......... .......... 281 AAAGTAAATA ACCCTTGATA TTACTGAAGT ACTATACAGT TTATCTGAAT TGGCTTGTGT 19650 .......... .......... .......... .......... .......... .......... 281 ATGATGATGA TAGGAGGACA ATATTGCTGT TGTTGTTGGG ACTGTTACCG ATGATGTTCG 19590 ||||||| |||||||||| || ||||||| |||||||||| |||||||||| .......... ...GAGGACA ATATTGCTGT TGATGTTGGG ACTGTTACCG ATGATGTTCG 328 AGCTTATGAA GTCCCAAAAA TCAAGGTTAC TGCATTGAGA TTCACGGAAA CAGCTAGAGC 19530 |||||||||| |||| |||| |||| | ||| ||| |||||| |||||||||| || ||| ||| AGCTTATGAA ATCCCCAAAA TCAACGCTAC TGCCTTGAGA TTCACGGAAA CATCTATAGC 388 TAGGATTGAG AAGGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 19470 ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGATTGAT AAAGCTGGAG GAGAATGTTT GACCTTTGAT CAGCTTGCTC TCAGAGCCCC 448 TCTTGGGCAG AACACTGTAC GGAACTTCTC TCTCTCATCA GTTTGCATTT TTATGCCTTT 19410 |||||||||| |||||| TCTTGGGCAG AACACT.... .......... .......... .......... .......... 464 TCTTTCATCA ATCAAGTGAA TAATTAGAGA ATATGCTGTA GTGCTCTTCA CTAGTATATA 19350 .......... .......... .......... .......... .......... .......... 464 ATAACAAACC GAGGTGTTTT TAGAATTGTG GTTTGAATCT CGTCCTGCAT AGGAAATGAT 19290 .......... .......... .......... .......... .......... .......... 464 TATGTATTCA TGGTAGAGGT AACATTGGCT AGTCATTTGT TTTGTAATGC TTTCTTGATC 19230 .......... .......... .......... .......... .......... .......... 464 AGGTTTTGCT TAGGG 19215 |||||||| || || ..GTTTTGCT TAAGG 477 hqPGS_C09HBa0278J12.1-_SGN-E257387+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19215) ******************************************************************************** EST sequence 361 +strand 470 n (File: SGN-E257448+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAAGTAAGTC CAAAAAGACT AAACGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTTACCT GACTGGAAAG GAGGACAATA TTGCTGCTGT 301 TGGTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA AGGTTACTGC 361 ATTGAGATTC ACCGAAACAG CTAGAGCTAG GATTGAAAAT GCTGGAGGAG AATGTTTGAC 421 CTTTGATCAG CTTGCTCTCA GAGCCCCTCT TGGGCAGAAC ACTGTTTTGC Predicted gene structure (within gDNA segment 21688 to 18792): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 0.96) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 0.978 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 0.98), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 152 280 ( 129 n); score: 0.992 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 0.98), Pa: 0.999 (s: 0.96) Exon 4 19636 19454 ( 183 n); cDNA 281 463 ( 183 n); score: 0.973 Intron 4 19453 19228 ( 226 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 0) Exon 5 19227 19221 ( 7 n); cDNA 464 470 ( 7 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E257448+ 0.983 470 1.000 C PGS_C09HBa0278J12.1-_SGN-E257448+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19221) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| ||||| |||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAAGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAACGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||| | |||||||||| TCACGTTTGG TTACTTACCT GACTGGAAAG .......... .......... .......... 280 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 280 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 280 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 280 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 280 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 280 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 280 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 280 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 280 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 280 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 280 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 280 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 280 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 280 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 280 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 280 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 280 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||| | |||| ||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGCT GTTGGTGGGA CTGTTACCGA TGATGTTCGA 328 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACCGAAAC AGCTAGAGCT 388 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 19469 |||||||| | | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAAA ATGCTGGAGG AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT 448 CTTGGGCAGA ACACTGTACG GAACTTCTCT CTCTCATCAG TTTGCATTTT TATGCCTTTT 19409 |||||||||| ||||| CTTGGGCAGA ACACT..... .......... .......... .......... .......... 463 CTTTCATCAA TCAAGTGAAT AATTAGAGAA TATGCTGTAG TGCTCTTCAC TAGTATATAA 19349 .......... .......... .......... .......... .......... .......... 463 TAACAAACCG AGGTGTTTTT AGAATTGTGG TTTGAATCTC GTCCTGCATA GGAAATGATT 19289 .......... .......... .......... .......... .......... .......... 463 ATGTATTCAT GGTAGAGGTA ACATTGGCTA GTCATTTGTT TTGTAATGCT TTCTTGATCA 19229 .......... .......... .......... .......... .......... .......... 463 GGTTTTGC 19221 ||||||| .GTTTTGC 470 hqPGS_C09HBa0278J12.1-_SGN-E257448+ (21088 21028,20944 20855,20767 20639,19636 19454,19227 19221) ******************************************************************************** EST sequence 243 +strand 566 n (File: SGN-E317277+) 1 AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GGTATCGATC 61 TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC GACGATGTTT 121 ATCTCAAGCT TCTCGTCAAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA 181 ATGCTGTGAT ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT 241 CACGTTTGGT TACTTACATG ACTGGAAAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG 301 TTACCGATGA TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA 361 CGGAAACAGC TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC 421 TTGCTCTCAG AGCCCCTCTT GGGCAGAACA CTGTACGGAA CTTCTCTCTC TCATCAGTTT 481 GCATTTTTAT GCCTTTTCTT TCATCAATCA AGTGAATAAT TAGAGAATAT GCTGTAGTGC 541 TCTTCACTAG TATATAATAA CAAACC Predicted gene structure (within gDNA segment 21677 to 18730): Exon 1 21077 21028 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 51 140 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 141 269 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19340 ( 297 n); cDNA 270 566 ( 297 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E317277+ 1.000 566 1.000 C PGS_C09HBa0278J12.1-_SGN-E317277+ (21077 21028,20944 20855,20767 20639,19636 19340) Alignment (genomic DNA sequence = upper lines): AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GTGAATATTT 21018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCAGGC GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG .......... 50 TTTTTTAGAA TATTCCTGCA TTTGTTTTCA CGGACGCCAT AGCTTGATTT TGTTATTTTG 20958 .......... .......... .......... .......... .......... .......... 50 ATTTTCTATT TAGGGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 20898 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT 97 TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGGTATTTT ATTTCACTAT 20838 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAG....... .......... 140 TGTCTTTATA GATTTAGTGC ATTTTTGGTT ACTATACTGA GAATTGGATG TTTAATTGTG 20778 .......... .......... .......... .......... .......... .......... 140 TGAATAATAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 20718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 190 ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 20658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 250 TACTTACATG ACTGGAAAGG TATTTTATTC ATTCATTTTA GCTTTGTTTC ACCTTACACT 20598 |||||||||| ||||||||| TACTTACATG ACTGGAAAG. .......... .......... .......... .......... 269 GTTTGGATAG TTTCATAATG TTGTATTGAT TGTATCATTT TATGTCGTTG TGTAATATTA 20538 .......... .......... .......... .......... .......... .......... 269 TGATCAATAA TTTGAATTAT AAACTTACAA GTAAATAGCA TACAGTGTAG AGCTAGACCT 20478 .......... .......... .......... .......... .......... .......... 269 ATCTAATGTG CCTTTATTTA GTGTTACCAT ACAATAAAAT TTGTATAACA ATCAAACTAA 20418 .......... .......... .......... .......... .......... .......... 269 CAGTTAATTT ATCCAACAAC ACAATGAAAT ACAATGTAAC AACCATCCAA ACATGCCTGC 20358 .......... .......... .......... .......... .......... .......... 269 TAGTGATCTT TGATTGGACA CATCTACAGC GAGCAGTTAT CAAAATATTC TTGCTTTATA 20298 .......... .......... .......... .......... .......... .......... 269 CTAGCATCGT TAAATTGTTA ATGGTATTAA CGACGTCCTG AGTAGCATTT ATGTGAATGA 20238 .......... .......... .......... .......... .......... .......... 269 AATTGCTAAA AAGTAGTAAT ATGCAGCGAT TAGGACTAAA GGAGTGAGGA ATTCACATAT 20178 .......... .......... .......... .......... .......... .......... 269 CAGAGTGTAC AATATAGCTT AACACTTGGG GGCCATTTAT ATGCCGGACA GGAATATAGA 20118 .......... .......... .......... .......... .......... .......... 269 TAGTCTTGTG ATAGAAATTA ACTACTGCGT ATTTCCTTTT TTGGTTACTT ATCCTAGGAT 20058 .......... .......... .......... .......... .......... .......... 269 GACTTATATT CGCTGTGATA AGTTATCCAT TCTAGTGGAT GGATTAATAC AAGTATCAGG 19998 .......... .......... .......... .......... .......... .......... 269 ATTACTATGA AAATGGAAAA AATACTCCCA AGGTTGCTCA AAACACTTTT TCTATTGAAG 19938 .......... .......... .......... .......... .......... .......... 269 AAGGTGGAGG GTTATCTTTG TATACAACTT TTCCGAATGT CCCTTTTTTT ATTTCTTATC 19878 .......... .......... .......... .......... .......... .......... 269 CTACATTGTA TAAAGTGATG CATAATTTTG CATATACAGC AAAGTTATGT CCCATGATTA 19818 .......... .......... .......... .......... .......... .......... 269 TTTATGCAAT GCATAATCTA TTCCTCAACC ATGCAGAGAT TTATATTAGA ATTGAAATGT 19758 .......... .......... .......... .......... .......... .......... 269 TAGATCTGTA ATCAGAGTAT GTTCCAGGAT TGTTTGTTCT TGTACAGCAA AGTAAATAAC 19698 .......... .......... .......... .......... .......... .......... 269 CCTTGATATT ACTGAAGTAC TATACAGTTT ATCTGAATTG GCTTGTGTAT GATGATGATA 19638 .......... .......... .......... .......... .......... .......... 269 GGAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 19578 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAGGACAAT ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT 328 CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 19518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAAAATC AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA 388 GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 19458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGGAGGA GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA 448 CACTGTACGG AACTTCTCTC TCTCATCAGT TTGCATTTTT ATGCCTTTTC TTTCATCAAT 19398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTACGG AACTTCTCTC TCTCATCAGT TTGCATTTTT ATGCCTTTTC TTTCATCAAT 508 CAAGTGAATA ATTAGAGAAT ATGCTGTAGT GCTCTTCACT AGTATATAAT AACAAACC 19340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAAGTGAATA ATTAGAGAAT ATGCTGTAGT GCTCTTCACT AGTATATAAT AACAAACC 566 hqPGS_C09HBa0278J12.1-_SGN-E317277+ (21077 21028,20944 20855,20767 20639,19636 19340) ******************************************************************************** EST sequence 282 +strand 442 n (File: SGN-E233460+) 1 GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GGTATCGATC TAGTTGCCGG 61 AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC GACGATGTTT ATCTCAAGCT 121 TCTCGTCAAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 181 ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT 241 TACTTACATG ACTGGAAAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA 301 TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC 361 TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC TTGCTCTCAG 421 AGCCCCTCTT GGGCAGAACA CT Predicted gene structure (within gDNA segment 21667 to 18844): Exon 1 21067 21028 ( 40 n); cDNA 1 40 ( 40 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 41 130 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 131 259 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19454 ( 183 n); cDNA 260 442 ( 183 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E233460+ 1.000 442 1.000 C PGS_C09HBa0278J12.1-_SGN-E233460+ (21067 21028,20944 20855,20767 20639,19636 19454) Alignment (genomic DNA sequence = upper lines): GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GTGAATATTT TTTTTTAGAA 21008 |||||||||| |||||||||| |||||||||| |||||||||| GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG .......... .......... 40 TATTCCTGCA TTTGTTTTCA CGGACGCCAT AGCTTGATTT TGTTATTTTG ATTTTCTATT 20948 .......... .......... .......... .......... .......... .......... 40 TAGGGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT TGCACCAAAA 20888 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT TGCACCAAAA 97 TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGGTATTTT ATTTCACTAT TGTCTTTATA 20828 |||||||||| |||||||||| |||||||||| ||| TCCGACGATG TTTATCTCAA GCTTCTCGTC AAG....... .......... .......... 130 GATTTAGTGC ATTTTTGGTT ACTATACTGA GAATTGGATG TTTAATTGTG TGAATAATAG 20768 .......... .......... .......... .......... .......... .......... 130 TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT ACTGAAGAGA 20708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT ACTGAAGAGA 190 CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT TACTTACATG 20648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT TACTTACATG 250 ACTGGAAAGG TATTTTATTC ATTCATTTTA GCTTTGTTTC ACCTTACACT GTTTGGATAG 20588 ||||||||| ACTGGAAAG. .......... .......... .......... .......... .......... 259 TTTCATAATG TTGTATTGAT TGTATCATTT TATGTCGTTG TGTAATATTA TGATCAATAA 20528 .......... .......... .......... .......... .......... .......... 259 TTTGAATTAT AAACTTACAA GTAAATAGCA TACAGTGTAG AGCTAGACCT ATCTAATGTG 20468 .......... .......... .......... .......... .......... .......... 259 CCTTTATTTA GTGTTACCAT ACAATAAAAT TTGTATAACA ATCAAACTAA CAGTTAATTT 20408 .......... .......... .......... .......... .......... .......... 259 ATCCAACAAC ACAATGAAAT ACAATGTAAC AACCATCCAA ACATGCCTGC TAGTGATCTT 20348 .......... .......... .......... .......... .......... .......... 259 TGATTGGACA CATCTACAGC GAGCAGTTAT CAAAATATTC TTGCTTTATA CTAGCATCGT 20288 .......... .......... .......... .......... .......... .......... 259 TAAATTGTTA ATGGTATTAA CGACGTCCTG AGTAGCATTT ATGTGAATGA AATTGCTAAA 20228 .......... .......... .......... .......... .......... .......... 259 AAGTAGTAAT ATGCAGCGAT TAGGACTAAA GGAGTGAGGA ATTCACATAT CAGAGTGTAC 20168 .......... .......... .......... .......... .......... .......... 259 AATATAGCTT AACACTTGGG GGCCATTTAT ATGCCGGACA GGAATATAGA TAGTCTTGTG 20108 .......... .......... .......... .......... .......... .......... 259 ATAGAAATTA ACTACTGCGT ATTTCCTTTT TTGGTTACTT ATCCTAGGAT GACTTATATT 20048 .......... .......... .......... .......... .......... .......... 259 CGCTGTGATA AGTTATCCAT TCTAGTGGAT GGATTAATAC AAGTATCAGG ATTACTATGA 19988 .......... .......... .......... .......... .......... .......... 259 AAATGGAAAA AATACTCCCA AGGTTGCTCA AAACACTTTT TCTATTGAAG AAGGTGGAGG 19928 .......... .......... .......... .......... .......... .......... 259 GTTATCTTTG TATACAACTT TTCCGAATGT CCCTTTTTTT ATTTCTTATC CTACATTGTA 19868 .......... .......... .......... .......... .......... .......... 259 TAAAGTGATG CATAATTTTG CATATACAGC AAAGTTATGT CCCATGATTA TTTATGCAAT 19808 .......... .......... .......... .......... .......... .......... 259 GCATAATCTA TTCCTCAACC ATGCAGAGAT TTATATTAGA ATTGAAATGT TAGATCTGTA 19748 .......... .......... .......... .......... .......... .......... 259 ATCAGAGTAT GTTCCAGGAT TGTTTGTTCT TGTACAGCAA AGTAAATAAC CCTTGATATT 19688 .......... .......... .......... .......... .......... .......... 259 ACTGAAGTAC TATACAGTTT ATCTGAATTG GCTTGTGTAT GATGATGATA GGAGGACAAT 19628 ||||||||| .......... .......... .......... .......... .......... .GAGGACAAT 268 ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT CCCAAAAATC 19568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT CCCAAAAATC 328 AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA GGCTGGAGGA 19508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA GGCTGGAGGA 388 GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA CACT 19454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GAATGTTTGA CCTTTGATCA GCTTGCTCTC AGAGCCCCTC TTGGGCAGAA CACT 442 hqPGS_C09HBa0278J12.1-_SGN-E233460+ (21067 21028,20944 20855,20767 20639,19636 19454) ******************************************************************************** EST sequence 261 +strand 469 n (File: SGN-E268277+) 1 CGAACAGAAA AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA 61 GCATCATGGG TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC 121 CAAAATCCGA CGATGTTTAT CTCAAGCTTC TCGTCAAGTT GTACCGATTT CTATCACGGA 181 GGACTGGTAG TAAGTTCAAT GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA 241 AAGCTCCATT GTCTCTATCA CGTTTGGTTA CTTACATGAC TGGAAAGGAG GACAATATTG 301 CTGTTGTTGT TGGGACTGTT ACCGATGATG TTCGAGCTTA TGAAGTCCCA AAAATCAAGG 361 TTACTGCATT GAGATTCACG GAAACAGCTA GAGCTAGGAT TGAGAAGGCT GGAGGAGAAT 421 GTTTGACCTT TGATCAGCTT GCTCTCAGAG CCCCTCTTGG GCAGAACAC Predicted gene structure (within gDNA segment 21695 to 18845): Exon 1 21095 21028 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 69 158 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 159 287 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19455 ( 182 n); cDNA 288 469 ( 182 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E268277+ 1.000 469 1.000 C PGS_C09HBa0278J12.1-_SGN-E268277+ (21095 21028,20944 20855,20767 20639,19636 19455) Alignment (genomic DNA sequence = upper lines): CGAACAGAAA AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA 21036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACAGAAA AACCTATCAG CAGCAGGCGG CGGCGGAGGA AAGTAGAAGC AGCAGGCGGA 60 GCATCATGGT GAATATTTTT TTTTAGAATA TTCCTGCATT TGTTTTCACG GACGCCATAG 20976 |||||||| GCATCATG.. .......... .......... .......... .......... .......... 68 CTTGATTTTG TTATTTTGAT TTTCTATTTA GGGTATCGAT CTAGTTGCCG GAGGTAAGTC 20916 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGTATCGAT CTAGTTGCCG GAGGTAAGTC 97 CAAAAAGACT AAGCGCATTG CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA 20856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAGACT AAGCGCATTG CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA 157 GGTATTTTAT TTCACTATTG TCTTTATAGA TTTAGTGCAT TTTTGGTTAC TATACTGAGA 20796 | G......... .......... .......... .......... .......... .......... 158 ATTGGATGTT TAATTGTGTG AATAATAGTT GTACCGATTT CTATCACGGA GGACTGGTAG 20736 || |||||||||| |||||||||| |||||||||| .......... .......... ........TT GTACCGATTT CTATCACGGA GGACTGGTAG 190 TAAGTTCAAT GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT 20676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCAAT GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT 250 GTCTCTATCA CGTTTGGTTA CTTACATGAC TGGAAAGGTA TTTTATTCAT TCATTTTAGC 20616 |||||||||| |||||||||| |||||||||| ||||||| GTCTCTATCA CGTTTGGTTA CTTACATGAC TGGAAAG... .......... .......... 287 TTTGTTTCAC CTTACACTGT TTGGATAGTT TCATAATGTT GTATTGATTG TATCATTTTA 20556 .......... .......... .......... .......... .......... .......... 287 TGTCGTTGTG TAATATTATG ATCAATAATT TGAATTATAA ACTTACAAGT AAATAGCATA 20496 .......... .......... .......... .......... .......... .......... 287 CAGTGTAGAG CTAGACCTAT CTAATGTGCC TTTATTTAGT GTTACCATAC AATAAAATTT 20436 .......... .......... .......... .......... .......... .......... 287 GTATAACAAT CAAACTAACA GTTAATTTAT CCAACAACAC AATGAAATAC AATGTAACAA 20376 .......... .......... .......... .......... .......... .......... 287 CCATCCAAAC ATGCCTGCTA GTGATCTTTG ATTGGACACA TCTACAGCGA GCAGTTATCA 20316 .......... .......... .......... .......... .......... .......... 287 AAATATTCTT GCTTTATACT AGCATCGTTA AATTGTTAAT GGTATTAACG ACGTCCTGAG 20256 .......... .......... .......... .......... .......... .......... 287 TAGCATTTAT GTGAATGAAA TTGCTAAAAA GTAGTAATAT GCAGCGATTA GGACTAAAGG 20196 .......... .......... .......... .......... .......... .......... 287 AGTGAGGAAT TCACATATCA GAGTGTACAA TATAGCTTAA CACTTGGGGG CCATTTATAT 20136 .......... .......... .......... .......... .......... .......... 287 GCCGGACAGG AATATAGATA GTCTTGTGAT AGAAATTAAC TACTGCGTAT TTCCTTTTTT 20076 .......... .......... .......... .......... .......... .......... 287 GGTTACTTAT CCTAGGATGA CTTATATTCG CTGTGATAAG TTATCCATTC TAGTGGATGG 20016 .......... .......... .......... .......... .......... .......... 287 ATTAATACAA GTATCAGGAT TACTATGAAA ATGGAAAAAA TACTCCCAAG GTTGCTCAAA 19956 .......... .......... .......... .......... .......... .......... 287 ACACTTTTTC TATTGAAGAA GGTGGAGGGT TATCTTTGTA TACAACTTTT CCGAATGTCC 19896 .......... .......... .......... .......... .......... .......... 287 CTTTTTTTAT TTCTTATCCT ACATTGTATA AAGTGATGCA TAATTTTGCA TATACAGCAA 19836 .......... .......... .......... .......... .......... .......... 287 AGTTATGTCC CATGATTATT TATGCAATGC ATAATCTATT CCTCAACCAT GCAGAGATTT 19776 .......... .......... .......... .......... .......... .......... 287 ATATTAGAAT TGAAATGTTA GATCTGTAAT CAGAGTATGT TCCAGGATTG TTTGTTCTTG 19716 .......... .......... .......... .......... .......... .......... 287 TACAGCAAAG TAAATAACCC TTGATATTAC TGAAGTACTA TACAGTTTAT CTGAATTGGC 19656 .......... .......... .......... .......... .......... .......... 287 TTGTGTATGA TGATGATAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA 19596 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA 328 TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC 19536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC 388 TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC TTGCTCTCAG 19476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA ATGTTTGACC TTTGATCAGC TTGCTCTCAG 448 AGCCCCTCTT GGGCAGAACA C 19455 |||||||||| |||||||||| | AGCCCCTCTT GGGCAGAACA C 469 hqPGS_C09HBa0278J12.1-_SGN-E268277+ (21095 21028,20944 20855,20767 20639,19636 19455) ******************************************************************************** EST sequence 432 +strand 413 n (File: SGN-E313284+) 1 GCGGAGCATC ATGGGTATCG ATCTAGTTGC CGGAGGTGAG TCCAAAAAGA CTAAGCGCAT 61 TGCACCAAAA TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGTTGTACC GATTTCTATC 121 ACGGAGGACT GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT 181 CAATAAAGCT CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AGGAGGACAA 241 TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA GCTTATGAAG TCCCAAAAAT 301 CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT AGGATTGAGA AGGCTGGAGG 361 AGAATGTTTG ACCTTTGATC AGCTTGCTCT CAGAGCCCCT CTTGGGCAGA ACA Predicted gene structure (within gDNA segment 21665 to 18846): Exon 1 21040 21028 ( 13 n); cDNA 1 13 ( 13 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 0.98) Exon 2 20944 20855 ( 90 n); cDNA 14 103 ( 90 n); score: 0.989 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 104 232 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19456 ( 181 n); cDNA 233 413 ( 181 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E313284+ 0.998 413 1.000 C PGS_C09HBa0278J12.1-_SGN-E313284+ (21040 21028,20944 20855,20767 20639,19636 19456) Alignment (genomic DNA sequence = upper lines): GCGGAGCATC ATGGTGAATA TTTTTTTTTA GAATATTCCT GCATTTGTTT TCACGGACGC 20981 |||||||||| ||| GCGGAGCATC ATG....... .......... .......... .......... .......... 13 CATAGCTTGA TTTTGTTATT TTGATTTTCT ATTTAGGGTA TCGATCTAGT TGCCGGAGGT 20921 |||| |||||||||| |||||||||| .......... .......... .......... ......GGTA TCGATCTAGT TGCCGGAGGT 37 AAGTCCAAAA AGACTAAGCG CATTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 20861 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCCAAAA AGACTAAGCG CATTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 97 GTCAAGGTAT TTTATTTCAC TATTGTCTTT ATAGATTTAG TGCATTTTTG GTTACTATAC 20801 |||||| GTCAAG.... .......... .......... .......... .......... .......... 103 TGAGAATTGG ATGTTTAATT GTGTGAATAA TAGTTGTACC GATTTCTATC ACGGAGGACT 20741 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TTGTACC GATTTCTATC ACGGAGGACT 130 GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT CAATAAAGCT 20681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT CAATAAAGCT 190 CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AGGTATTTTA TTCATTCATT 20621 |||||||||| |||||||||| |||||||||| |||||||||| || CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AG........ .......... 232 TTAGCTTTGT TTCACCTTAC ACTGTTTGGA TAGTTTCATA ATGTTGTATT GATTGTATCA 20561 .......... .......... .......... .......... .......... .......... 232 TTTTATGTCG TTGTGTAATA TTATGATCAA TAATTTGAAT TATAAACTTA CAAGTAAATA 20501 .......... .......... .......... .......... .......... .......... 232 GCATACAGTG TAGAGCTAGA CCTATCTAAT GTGCCTTTAT TTAGTGTTAC CATACAATAA 20441 .......... .......... .......... .......... .......... .......... 232 AATTTGTATA ACAATCAAAC TAACAGTTAA TTTATCCAAC AACACAATGA AATACAATGT 20381 .......... .......... .......... .......... .......... .......... 232 AACAACCATC CAAACATGCC TGCTAGTGAT CTTTGATTGG ACACATCTAC AGCGAGCAGT 20321 .......... .......... .......... .......... .......... .......... 232 TATCAAAATA TTCTTGCTTT ATACTAGCAT CGTTAAATTG TTAATGGTAT TAACGACGTC 20261 .......... .......... .......... .......... .......... .......... 232 CTGAGTAGCA TTTATGTGAA TGAAATTGCT AAAAAGTAGT AATATGCAGC GATTAGGACT 20201 .......... .......... .......... .......... .......... .......... 232 AAAGGAGTGA GGAATTCACA TATCAGAGTG TACAATATAG CTTAACACTT GGGGGCCATT 20141 .......... .......... .......... .......... .......... .......... 232 TATATGCCGG ACAGGAATAT AGATAGTCTT GTGATAGAAA TTAACTACTG CGTATTTCCT 20081 .......... .......... .......... .......... .......... .......... 232 TTTTTGGTTA CTTATCCTAG GATGACTTAT ATTCGCTGTG ATAAGTTATC CATTCTAGTG 20021 .......... .......... .......... .......... .......... .......... 232 GATGGATTAA TACAAGTATC AGGATTACTA TGAAAATGGA AAAAATACTC CCAAGGTTGC 19961 .......... .......... .......... .......... .......... .......... 232 TCAAAACACT TTTTCTATTG AAGAAGGTGG AGGGTTATCT TTGTATACAA CTTTTCCGAA 19901 .......... .......... .......... .......... .......... .......... 232 TGTCCCTTTT TTTATTTCTT ATCCTACATT GTATAAAGTG ATGCATAATT TTGCATATAC 19841 .......... .......... .......... .......... .......... .......... 232 AGCAAAGTTA TGTCCCATGA TTATTTATGC AATGCATAAT CTATTCCTCA ACCATGCAGA 19781 .......... .......... .......... .......... .......... .......... 232 GATTTATATT AGAATTGAAA TGTTAGATCT GTAATCAGAG TATGTTCCAG GATTGTTTGT 19721 .......... .......... .......... .......... .......... .......... 232 TCTTGTACAG CAAAGTAAAT AACCCTTGAT ATTACTGAAG TACTATACAG TTTATCTGAA 19661 .......... .......... .......... .......... .......... .......... 232 TTGGCTTGTG TATGATGATG ATAGGAGGAC AATATTGCTG TTGTTGTTGG GACTGTTACC 19601 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GAGGAC AATATTGCTG TTGTTGTTGG GACTGTTACC 268 GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 19541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 328 ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 19481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 388 CTCAGAGCCC CTCTTGGGCA GAACA 19456 |||||||||| |||||||||| ||||| CTCAGAGCCC CTCTTGGGCA GAACA 413 hqPGS_C09HBa0278J12.1-_SGN-E313284+ (21040 21028,20944 20855,20767 20639,19636 19456) ******************************************************************************** EST sequence 341 +strand 442 n (File: SGN-E281970+) 1 AGCAGGCGGC GGCGGAGGAA AGTAGAAGCA GCAGGCGGAG CATCATGGGT ATCGATCTAG 61 TTGCCGGAGG TAAGTCCAAA AAGACTAAGC GCATTGCACC AAAATCCGAC GATGTTTATC 121 TCAAGCTTCT CGTCAAGTTG TACCGATTTC TATCACGGAG GACTGGTAGT AAGTTCAATG 181 CTGTGATACT GAAGAGACTC TTCATGAGCA AGATCAATAA AGCTCCATTG TCTCTATCAC 241 GTTTGGTTAC TTACATGACT GGAAAGGAGG ACAATATTGC TGTTGTTGTT GGGACTGTTA 301 CCGATGATGT TCGAGCTTAT GAAGTCCCAA AAATCAAGGT TACTGCATTG AGATTCACGG 361 AAACAGCTAG AGCTAGGATT GAGAAGGCTG GAGGAGAATG TTTGACCTTT GATCAGCTTG 421 CTCTCAGAGC CCCTCTTGGG CA Predicted gene structure (within gDNA segment 21674 to 18851): Exon 1 21074 21028 ( 47 n); cDNA 1 47 ( 47 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 48 137 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 138 266 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19461 ( 176 n); cDNA 267 442 ( 176 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E281970+ 1.000 442 1.000 C PGS_C09HBa0278J12.1-_SGN-E281970+ (21074 21028,20944 20855,20767 20639,19636 19461) Alignment (genomic DNA sequence = upper lines): AGCAGGCGGC GGCGGAGGAA AGTAGAAGCA GCAGGCGGAG CATCATGGTG AATATTTTTT 21015 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGCAGGCGGC GGCGGAGGAA AGTAGAAGCA GCAGGCGGAG CATCATG... .......... 47 TTTAGAATAT TCCTGCATTT GTTTTCACGG ACGCCATAGC TTGATTTTGT TATTTTGATT 20955 .......... .......... .......... .......... .......... .......... 47 TTCTATTTAG GGTATCGATC TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC 20895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GGTATCGATC TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC 97 ACCAAAATCC GACGATGTTT ATCTCAAGCT TCTCGTCAAG GTATTTTATT TCACTATTGT 20835 |||||||||| |||||||||| |||||||||| |||||||||| ACCAAAATCC GACGATGTTT ATCTCAAGCT TCTCGTCAAG .......... .......... 137 CTTTATAGAT TTAGTGCATT TTTGGTTACT ATACTGAGAA TTGGATGTTT AATTGTGTGA 20775 .......... .......... .......... .......... .......... .......... 137 ATAATAGTTG TACCGATTTC TATCACGGAG GACTGGTAGT AAGTTCAATG CTGTGATACT 20715 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TTG TACCGATTTC TATCACGGAG GACTGGTAGT AAGTTCAATG CTGTGATACT 190 GAAGAGACTC TTCATGAGCA AGATCAATAA AGCTCCATTG TCTCTATCAC GTTTGGTTAC 20655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGACTC TTCATGAGCA AGATCAATAA AGCTCCATTG TCTCTATCAC GTTTGGTTAC 250 TTACATGACT GGAAAGGTAT TTTATTCATT CATTTTAGCT TTGTTTCACC TTACACTGTT 20595 |||||||||| |||||| TTACATGACT GGAAAG.... .......... .......... .......... .......... 266 TGGATAGTTT CATAATGTTG TATTGATTGT ATCATTTTAT GTCGTTGTGT AATATTATGA 20535 .......... .......... .......... .......... .......... .......... 266 TCAATAATTT GAATTATAAA CTTACAAGTA AATAGCATAC AGTGTAGAGC TAGACCTATC 20475 .......... .......... .......... .......... .......... .......... 266 TAATGTGCCT TTATTTAGTG TTACCATACA ATAAAATTTG TATAACAATC AAACTAACAG 20415 .......... .......... .......... .......... .......... .......... 266 TTAATTTATC CAACAACACA ATGAAATACA ATGTAACAAC CATCCAAACA TGCCTGCTAG 20355 .......... .......... .......... .......... .......... .......... 266 TGATCTTTGA TTGGACACAT CTACAGCGAG CAGTTATCAA AATATTCTTG CTTTATACTA 20295 .......... .......... .......... .......... .......... .......... 266 GCATCGTTAA ATTGTTAATG GTATTAACGA CGTCCTGAGT AGCATTTATG TGAATGAAAT 20235 .......... .......... .......... .......... .......... .......... 266 TGCTAAAAAG TAGTAATATG CAGCGATTAG GACTAAAGGA GTGAGGAATT CACATATCAG 20175 .......... .......... .......... .......... .......... .......... 266 AGTGTACAAT ATAGCTTAAC ACTTGGGGGC CATTTATATG CCGGACAGGA ATATAGATAG 20115 .......... .......... .......... .......... .......... .......... 266 TCTTGTGATA GAAATTAACT ACTGCGTATT TCCTTTTTTG GTTACTTATC CTAGGATGAC 20055 .......... .......... .......... .......... .......... .......... 266 TTATATTCGC TGTGATAAGT TATCCATTCT AGTGGATGGA TTAATACAAG TATCAGGATT 19995 .......... .......... .......... .......... .......... .......... 266 ACTATGAAAA TGGAAAAAAT ACTCCCAAGG TTGCTCAAAA CACTTTTTCT ATTGAAGAAG 19935 .......... .......... .......... .......... .......... .......... 266 GTGGAGGGTT ATCTTTGTAT ACAACTTTTC CGAATGTCCC TTTTTTTATT TCTTATCCTA 19875 .......... .......... .......... .......... .......... .......... 266 CATTGTATAA AGTGATGCAT AATTTTGCAT ATACAGCAAA GTTATGTCCC ATGATTATTT 19815 .......... .......... .......... .......... .......... .......... 266 ATGCAATGCA TAATCTATTC CTCAACCATG CAGAGATTTA TATTAGAATT GAAATGTTAG 19755 .......... .......... .......... .......... .......... .......... 266 ATCTGTAATC AGAGTATGTT CCAGGATTGT TTGTTCTTGT ACAGCAAAGT AAATAACCCT 19695 .......... .......... .......... .......... .......... .......... 266 TGATATTACT GAAGTACTAT ACAGTTTATC TGAATTGGCT TGTGTATGAT GATGATAGGA 19635 || .......... .......... .......... .......... .......... ........GA 268 GGACAATATT GCTGTTGTTG TTGGGACTGT TACCGATGAT GTTCGAGCTT ATGAAGTCCC 19575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAATATT GCTGTTGTTG TTGGGACTGT TACCGATGAT GTTCGAGCTT ATGAAGTCCC 328 AAAAATCAAG GTTACTGCAT TGAGATTCAC GGAAACAGCT AGAGCTAGGA TTGAGAAGGC 19515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCAAG GTTACTGCAT TGAGATTCAC GGAAACAGCT AGAGCTAGGA TTGAGAAGGC 388 TGGAGGAGAA TGTTTGACCT TTGATCAGCT TGCTCTCAGA GCCCCTCTTG GGCA 19461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGAGGAGAA TGTTTGACCT TTGATCAGCT TGCTCTCAGA GCCCCTCTTG GGCA 442 hqPGS_C09HBa0278J12.1-_SGN-E281970+ (21074 21028,20944 20855,20767 20639,19636 19461) ******************************************************************************** EST sequence 278 +strand 397 n (File: SGN-E353915+) 1 GCCGTTAAGC ACTTTGGTAA AGCACCTGGT GTCCCACACA GCCACACAAA GCCTTATGTT 61 CGCGCAAAGG GAAGGAAGTT TGAGCGAGCA AGAGGAAAGA GAAATAGCAG AGGCTACAAG 121 GCTTGAGGAA GTGCTGGTGT TTGAATGCAC ATTGATAGAG TTTCTATTAG AAGTATTTGC 181 CAACCTACTT TTACCATTAA TAGTATCTTG TTGGATTTTC TTATTTCAAC TCTGTTTCTC 241 TTACACACTC CAGCATCATA TTGCTGATTT TTGAATGTGT TATCTGTTTT GCAAAATTAA 301 TCTCTATTTA GAGACTGAAT CTTTACAACA AGGTTATGCT TGGTAATTTA TTTTGTTTTA 361 TACTAATTCC TCTTAATACA TTTTTATAAA AAAAAAA Predicted gene structure (within gDNA segment 19794 to 18116): Exon 1 19194 18806 ( 389 n); cDNA 1 389 ( 389 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E353915+ 1.000 389 0.980 C PGS_C09HBa0278J12.1-_SGN-E353915+ (19194 18806) Alignment (genomic DNA sequence = upper lines): GCCGTTAAGC ACTTTGGTAA AGCACCTGGT GTCCCACACA GCCACACAAA GCCTTATGTT 19135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTAAGC ACTTTGGTAA AGCACCTGGT GTCCCACACA GCCACACAAA GCCTTATGTT 60 CGCGCAAAGG GAAGGAAGTT TGAGCGAGCA AGAGGAAAGA GAAATAGCAG AGGCTACAAG 19075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGCAAAGG GAAGGAAGTT TGAGCGAGCA AGAGGAAAGA GAAATAGCAG AGGCTACAAG 120 GCTTGAGGAA GTGCTGGTGT TTGAATGCAC ATTGATAGAG TTTCTATTAG AAGTATTTGC 19015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGAGGAA GTGCTGGTGT TTGAATGCAC ATTGATAGAG TTTCTATTAG AAGTATTTGC 180 CAACCTACTT TTACCATTAA TAGTATCTTG TTGGATTTTC TTATTTCAAC TCTGTTTCTC 18955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTACTT TTACCATTAA TAGTATCTTG TTGGATTTTC TTATTTCAAC TCTGTTTCTC 240 TTACACACTC CAGCATCATA TTGCTGATTT TTGAATGTGT TATCTGTTTT GCAAAATTAA 18895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACACACTC CAGCATCATA TTGCTGATTT TTGAATGTGT TATCTGTTTT GCAAAATTAA 300 TCTCTATTTA GAGACTGAAT CTTTACAACA AGGTTATGCT TGGTAATTTA TTTTGTTTTA 18835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTATTTA GAGACTGAAT CTTTACAACA AGGTTATGCT TGGTAATTTA TTTTGTTTTA 360 TACTAATTCC TCTTAATACA TTTTTATAA 18806 |||||||||| |||||||||| ||||||||| TACTAATTCC TCTTAATACA TTTTTATAA 389 hqPGS_C09HBa0278J12.1-_SGN-E353915+ (19194 18806) ******************************************************************************** EST sequence 25 -strand 349 n (File: SGN-E203155-) 1 TGTCCCACAC AGCCACACAA AGCCTTATGT TCGCGCAAAG GGAAGGAAGT TTGAGCGAGC 61 AAGAGGAAAG AGAAATAGCA GAGGCTACAA GGCATGAGGA AGTGCTGGTG TTTGAATGCA 121 CATTGATAGA GTTTCTATTA GAAGTATTTG CCAACCTACT TTTACCATTA ATAGTATCCT 181 GTTGGATTTT CTTATTTCAA CTCTGTTTCT CTTACACACT CCAGCATCAT ATTGCTGATT 241 TTTGAATGTG TTATCTGTTT TGCAAAATTA ATCTCTATTT AGAGACTGAA TCTTTACAAC 301 AAGGTTATGC TTGGTAATTT ATTTTGTTTT AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 19775 to 18055): Exon 1 19165 18836 ( 330 n); cDNA 1 330 ( 330 n); score: 0.994 PPA cDNA 331 349 MATCH C09HBa0278J12.1- SGN-E203155- 0.994 330 0.946 C PGS_C09HBa0278J12.1-_SGN-E203155- (19165 18836) Alignment (genomic DNA sequence = upper lines): TGTCCCACAC AGCCACACAA AGCCTTATGT TCGCGCAAAG GGAAGGAAGT TTGAGCGAGC 19106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCCACAC AGCCACACAA AGCCTTATGT TCGCGCAAAG GGAAGGAAGT TTGAGCGAGC 60 AAGAGGAAAG AGAAATAGCA GAGGCTACAA GGCTTGAGGA AGTGCTGGTG TTTGAATGCA 19046 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAGAGGAAAG AGAAATAGCA GAGGCTACAA GGCATGAGGA AGTGCTGGTG TTTGAATGCA 120 CATTGATAGA GTTTCTATTA GAAGTATTTG CCAACCTACT TTTACCATTA ATAGTATCTT 18986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CATTGATAGA GTTTCTATTA GAAGTATTTG CCAACCTACT TTTACCATTA ATAGTATCCT 180 GTTGGATTTT CTTATTTCAA CTCTGTTTCT CTTACACACT CCAGCATCAT ATTGCTGATT 18926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGATTTT CTTATTTCAA CTCTGTTTCT CTTACACACT CCAGCATCAT ATTGCTGATT 240 TTTGAATGTG TTATCTGTTT TGCAAAATTA ATCTCTATTT AGAGACTGAA TCTTTACAAC 18866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAATGTG TTATCTGTTT TGCAAAATTA ATCTCTATTT AGAGACTGAA TCTTTACAAC 300 AAGGTTATGC TTGGTAATTT ATTTTGTTTT 18836 |||||||||| |||||||||| |||||||||| AAGGTTATGC TTGGTAATTT ATTTTGTTTT 330 hqPGS_C09HBa0278J12.1-_SGN-E203155- (19165 18836) ******************************************************************************** EST sequence 211 +strand 431 n (File: SGN-E293713+) 1 AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 61 GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG CACCAAAATC 121 CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA TTTCTATCAC GGAGGACTGG 181 TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC 241 ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GAGGACAATA TTGCTGTTGT 301 TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA AGGTTACTGC 361 ATTGAGATTC ACGGAAACAG CTAGAGCTAG GATTGAGAAG GCTGGAGGAG AATGTTTGAC 421 CTTTGATCAG C Predicted gene structure (within gDNA segment 21688 to 18876): Exon 1 21088 21028 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 62 151 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 152 280 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19486 ( 151 n); cDNA 281 431 ( 151 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E293713+ 1.000 431 1.000 C PGS_C09HBa0278J12.1-_SGN-E293713+ (21088 21028,20944 20855,20767 20639,19636 19486) Alignment (genomic DNA sequence = upper lines): AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACCTAT CAGCAGCAGG CGGCGGCGGA GGAAAGTAGA AGCAGCAGGC GGAGCATCAT 60 GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC ACGGACGCCA TAGCTTGATT 20969 | G......... .......... .......... .......... .......... .......... 61 TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 20909 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTATC GATCTAGTTG CCGGAGGTAA GTCCAAAAAG 97 ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAGGTATTT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA AGCTTCTCGT CAAG...... 151 TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT TACTATACTG AGAATTGGAT 20789 .......... .......... .......... .......... .......... .......... 151 GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 20729 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTGTACCGA TTTCTATCAC GGAGGACTGG TAGTAAGTTC 190 AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA ATAAAGCTCC ATTGTCTCTA 250 TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT CATTCATTTT AGCTTTGTTT 20609 |||||||||| |||||||||| |||||||||| TCACGTTTGG TTACTTACAT GACTGGAAAG .......... .......... .......... 280 CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA TTGTATCATT TTATGTCGTT 20549 .......... .......... .......... .......... .......... .......... 280 GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA AGTAAATAGC ATACAGTGTA 20489 .......... .......... .......... .......... .......... .......... 280 GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA TACAATAAAA TTTGTATAAC 20429 .......... .......... .......... .......... .......... .......... 280 AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA TACAATGTAA CAACCATCCA 20369 .......... .......... .......... .......... .......... .......... 280 AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG CGAGCAGTTA TCAAAATATT 20309 .......... .......... .......... .......... .......... .......... 280 CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA ACGACGTCCT GAGTAGCATT 20249 .......... .......... .......... .......... .......... .......... 280 TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA TTAGGACTAA AGGAGTGAGG 20189 .......... .......... .......... .......... .......... .......... 280 AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG GGGCCATTTA TATGCCGGAC 20129 .......... .......... .......... .......... .......... .......... 280 AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG TATTTCCTTT TTTGGTTACT 20069 .......... .......... .......... .......... .......... .......... 280 TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA TTCTAGTGGA TGGATTAATA 20009 .......... .......... .......... .......... .......... .......... 280 CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC AAGGTTGCTC AAAACACTTT 19949 .......... .......... .......... .......... .......... .......... 280 TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT TTTCCGAATG TCCCTTTTTT 19889 .......... .......... .......... .......... .......... .......... 280 TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT GCATATACAG CAAAGTTATG 19829 .......... .......... .......... .......... .......... .......... 280 TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC CATGCAGAGA TTTATATTAG 19769 .......... .......... .......... .......... .......... .......... 280 AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA TTGTTTGTTC TTGTACAGCA 19709 .......... .......... .......... .......... .......... .......... 280 AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT TATCTGAATT GGCTTGTGTA 19649 .......... .......... .......... .......... .......... .......... 280 TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 19589 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA CTGTTACCGA TGATGTTCGA 328 GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT TCACGGAAAC AGCTAGAGCT 388 AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGC 19486 |||||||||| |||||||||| |||||||||| |||||||||| ||| AGGATTGAGA AGGCTGGAGG AGAATGTTTG ACCTTTGATC AGC 431 hqPGS_C09HBa0278J12.1-_SGN-E293713+ (21088 21028,20944 20855,20767 20639,19636 19486) ******************************************************************************** EST sequence 433 +strand 392 n (File: SGN-E313408+) 1 GGCGGCGGAG GAAAGTAGAA GCATCAGGCG GAGCATCATG GGTATCGATC TAGTTGCCGG 61 AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC GACGATGTTT ATCTCAAGCT 121 TCTCGTCAAG TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT 181 ACTGAAGAGA CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGA 241 TACTTACATG ACTGGAAAGG AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA 301 TGTTCGAGCT TATGAAGTCC CAAAAATCAA GGTTACTGCA TTGAGATTCA CCGAAACAGC 361 TAGAGCTAGG ATTGAGAAGG CTGGAGGAGA AT Predicted gene structure (within gDNA segment 21667 to 18894): Exon 1 21067 21028 ( 40 n); cDNA 1 40 ( 40 n); score: 0.975 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 41 130 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 131 259 ( 129 n); score: 0.992 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 4 19636 19504 ( 133 n); cDNA 260 392 ( 133 n); score: 0.992 MATCH C09HBa0278J12.1- SGN-E313408+ 0.994 392 1.000 C PGS_C09HBa0278J12.1-_SGN-E313408+ (21067 21028,20944 20855,20767 20639,19636 19504) Alignment (genomic DNA sequence = upper lines): GGCGGCGGAG GAAAGTAGAA GCAGCAGGCG GAGCATCATG GTGAATATTT TTTTTTAGAA 21008 |||||||||| |||||||||| ||| |||||| |||||||||| GGCGGCGGAG GAAAGTAGAA GCATCAGGCG GAGCATCATG .......... .......... 40 TATTCCTGCA TTTGTTTTCA CGGACGCCAT AGCTTGATTT TGTTATTTTG ATTTTCTATT 20948 .......... .......... .......... .......... .......... .......... 40 TAGGGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT TGCACCAAAA 20888 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GGTATCG ATCTAGTTGC CGGAGGTAAG TCCAAAAAGA CTAAGCGCAT TGCACCAAAA 97 TCCGACGATG TTTATCTCAA GCTTCTCGTC AAGGTATTTT ATTTCACTAT TGTCTTTATA 20828 |||||||||| |||||||||| |||||||||| ||| TCCGACGATG TTTATCTCAA GCTTCTCGTC AAG....... .......... .......... 130 GATTTAGTGC ATTTTTGGTT ACTATACTGA GAATTGGATG TTTAATTGTG TGAATAATAG 20768 .......... .......... .......... .......... .......... .......... 130 TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT ACTGAAGAGA 20708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTACCGAT TTCTATCACG GAGGACTGGT AGTAAGTTCA ATGCTGTGAT ACTGAAGAGA 190 CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGT TACTTACATG 20648 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTCTTCATGA GCAAGATCAA TAAAGCTCCA TTGTCTCTAT CACGTTTGGA TACTTACATG 250 ACTGGAAAGG TATTTTATTC ATTCATTTTA GCTTTGTTTC ACCTTACACT GTTTGGATAG 20588 ||||||||| ACTGGAAAG. .......... .......... .......... .......... .......... 259 TTTCATAATG TTGTATTGAT TGTATCATTT TATGTCGTTG TGTAATATTA TGATCAATAA 20528 .......... .......... .......... .......... .......... .......... 259 TTTGAATTAT AAACTTACAA GTAAATAGCA TACAGTGTAG AGCTAGACCT ATCTAATGTG 20468 .......... .......... .......... .......... .......... .......... 259 CCTTTATTTA GTGTTACCAT ACAATAAAAT TTGTATAACA ATCAAACTAA CAGTTAATTT 20408 .......... .......... .......... .......... .......... .......... 259 ATCCAACAAC ACAATGAAAT ACAATGTAAC AACCATCCAA ACATGCCTGC TAGTGATCTT 20348 .......... .......... .......... .......... .......... .......... 259 TGATTGGACA CATCTACAGC GAGCAGTTAT CAAAATATTC TTGCTTTATA CTAGCATCGT 20288 .......... .......... .......... .......... .......... .......... 259 TAAATTGTTA ATGGTATTAA CGACGTCCTG AGTAGCATTT ATGTGAATGA AATTGCTAAA 20228 .......... .......... .......... .......... .......... .......... 259 AAGTAGTAAT ATGCAGCGAT TAGGACTAAA GGAGTGAGGA ATTCACATAT CAGAGTGTAC 20168 .......... .......... .......... .......... .......... .......... 259 AATATAGCTT AACACTTGGG GGCCATTTAT ATGCCGGACA GGAATATAGA TAGTCTTGTG 20108 .......... .......... .......... .......... .......... .......... 259 ATAGAAATTA ACTACTGCGT ATTTCCTTTT TTGGTTACTT ATCCTAGGAT GACTTATATT 20048 .......... .......... .......... .......... .......... .......... 259 CGCTGTGATA AGTTATCCAT TCTAGTGGAT GGATTAATAC AAGTATCAGG ATTACTATGA 19988 .......... .......... .......... .......... .......... .......... 259 AAATGGAAAA AATACTCCCA AGGTTGCTCA AAACACTTTT TCTATTGAAG AAGGTGGAGG 19928 .......... .......... .......... .......... .......... .......... 259 GTTATCTTTG TATACAACTT TTCCGAATGT CCCTTTTTTT ATTTCTTATC CTACATTGTA 19868 .......... .......... .......... .......... .......... .......... 259 TAAAGTGATG CATAATTTTG CATATACAGC AAAGTTATGT CCCATGATTA TTTATGCAAT 19808 .......... .......... .......... .......... .......... .......... 259 GCATAATCTA TTCCTCAACC ATGCAGAGAT TTATATTAGA ATTGAAATGT TAGATCTGTA 19748 .......... .......... .......... .......... .......... .......... 259 ATCAGAGTAT GTTCCAGGAT TGTTTGTTCT TGTACAGCAA AGTAAATAAC CCTTGATATT 19688 .......... .......... .......... .......... .......... .......... 259 ACTGAAGTAC TATACAGTTT ATCTGAATTG GCTTGTGTAT GATGATGATA GGAGGACAAT 19628 ||||||||| .......... .......... .......... .......... .......... .GAGGACAAT 268 ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT CCCAAAAATC 19568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGTTG TTGTTGGGAC TGTTACCGAT GATGTTCGAG CTTATGAAGT CCCAAAAATC 328 AAGGTTACTG CATTGAGATT CACGGAAACA GCTAGAGCTA GGATTGAGAA GGCTGGAGGA 19508 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AAGGTTACTG CATTGAGATT CACCGAAACA GCTAGAGCTA GGATTGAGAA GGCTGGAGGA 388 GAAT 19504 |||| GAAT 392 hqPGS_C09HBa0278J12.1-_SGN-E313408+ (21067 21028,20944 20855,20767 20639,19636 19504) ******************************************************************************** EST sequence 356 +strand 382 n (File: SGN-E282111+) 1 AGCATGCGGC GGCGGAGGTA AAGTAGAAGC AGCAGGCGGA GCATCATGGG TATCGATCTA 61 GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA CGATGTTTAT 121 CTCAAGCTTC TCGTCAAGTT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT 181 GCTGTGATAC TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA 241 CGTTTGGTTA CTTACATGAC TGGAAAGGAG GACAATATTG CTGTTGTTGT TGGGACTGTT 301 ACCGATGATG TTCGAGCTTA TGAAGTCCCA AAAATCAAGG TTACTGCATT GAGATTCACG 361 GAAACAGCTA GAGCTAGGAT TG Predicted gene structure (within gDNA segment 21846 to 18912): Exon 1 21074 21028 ( 47 n); cDNA 1 48 ( 48 n); score: 0.926 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0.93), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 49 138 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 139 267 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19522 ( 115 n); cDNA 268 382 ( 115 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E282111+ 1.000 381 0.997 C PGS_C09HBa0278J12.1-_SGN-E282111+ (21074 21028,20944 20855,20767 20639,19636 19522) Alignment (genomic DNA sequence = upper lines): AGCAGGCGGC GGCGGAGG-A AAGTAGAAGC AGCAGGCGGA GCATCATGGT GAATATTTTT 21016 |||| ||||| |||||||| | |||||||||| |||||||||| |||||||| AGCATGCGGC GGCGGAGGTA AAGTAGAAGC AGCAGGCGGA GCATCATG.. .......... 48 TTTTAGAATA TTCCTGCATT TGTTTTCACG GACGCCATAG CTTGATTTTG TTATTTTGAT 20956 .......... .......... .......... .......... .......... .......... 48 TTTCTATTTA GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG 20896 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT AAGCGCATTG 97 CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA GGTATTTTAT TTCACTATTG 20836 |||||||||| |||||||||| |||||||||| |||||||||| | CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA G......... .......... 138 TCTTTATAGA TTTAGTGCAT TTTTGGTTAC TATACTGAGA ATTGGATGTT TAATTGTGTG 20776 .......... .......... .......... .......... .......... .......... 138 AATAATAGTT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT GCTGTGATAC 20716 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT GCTGTGATAC 190 TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA CGTTTGGTTA 20656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA CGTTTGGTTA 250 CTTACATGAC TGGAAAGGTA TTTTATTCAT TCATTTTAGC TTTGTTTCAC CTTACACTGT 20596 |||||||||| ||||||| CTTACATGAC TGGAAAG... .......... .......... .......... .......... 267 TTGGATAGTT TCATAATGTT GTATTGATTG TATCATTTTA TGTCGTTGTG TAATATTATG 20536 .......... .......... .......... .......... .......... .......... 267 ATCAATAATT TGAATTATAA ACTTACAAGT AAATAGCATA CAGTGTAGAG CTAGACCTAT 20476 .......... .......... .......... .......... .......... .......... 267 CTAATGTGCC TTTATTTAGT GTTACCATAC AATAAAATTT GTATAACAAT CAAACTAACA 20416 .......... .......... .......... .......... .......... .......... 267 GTTAATTTAT CCAACAACAC AATGAAATAC AATGTAACAA CCATCCAAAC ATGCCTGCTA 20356 .......... .......... .......... .......... .......... .......... 267 GTGATCTTTG ATTGGACACA TCTACAGCGA GCAGTTATCA AAATATTCTT GCTTTATACT 20296 .......... .......... .......... .......... .......... .......... 267 AGCATCGTTA AATTGTTAAT GGTATTAACG ACGTCCTGAG TAGCATTTAT GTGAATGAAA 20236 .......... .......... .......... .......... .......... .......... 267 TTGCTAAAAA GTAGTAATAT GCAGCGATTA GGACTAAAGG AGTGAGGAAT TCACATATCA 20176 .......... .......... .......... .......... .......... .......... 267 GAGTGTACAA TATAGCTTAA CACTTGGGGG CCATTTATAT GCCGGACAGG AATATAGATA 20116 .......... .......... .......... .......... .......... .......... 267 GTCTTGTGAT AGAAATTAAC TACTGCGTAT TTCCTTTTTT GGTTACTTAT CCTAGGATGA 20056 .......... .......... .......... .......... .......... .......... 267 CTTATATTCG CTGTGATAAG TTATCCATTC TAGTGGATGG ATTAATACAA GTATCAGGAT 19996 .......... .......... .......... .......... .......... .......... 267 TACTATGAAA ATGGAAAAAA TACTCCCAAG GTTGCTCAAA ACACTTTTTC TATTGAAGAA 19936 .......... .......... .......... .......... .......... .......... 267 GGTGGAGGGT TATCTTTGTA TACAACTTTT CCGAATGTCC CTTTTTTTAT TTCTTATCCT 19876 .......... .......... .......... .......... .......... .......... 267 ACATTGTATA AAGTGATGCA TAATTTTGCA TATACAGCAA AGTTATGTCC CATGATTATT 19816 .......... .......... .......... .......... .......... .......... 267 TATGCAATGC ATAATCTATT CCTCAACCAT GCAGAGATTT ATATTAGAAT TGAAATGTTA 19756 .......... .......... .......... .......... .......... .......... 267 GATCTGTAAT CAGAGTATGT TCCAGGATTG TTTGTTCTTG TACAGCAAAG TAAATAACCC 19696 .......... .......... .......... .......... .......... .......... 267 TTGATATTAC TGAAGTACTA TACAGTTTAT CTGAATTGGC TTGTGTATGA TGATGATAGG 19636 | .......... .......... .......... .......... .......... .........G 268 AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA TGTTCGAGCT TATGAAGTCC 19576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACAATAT TGCTGTTGTT GTTGGGACTG TTACCGATGA TGTTCGAGCT TATGAAGTCC 328 CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC TAGAGCTAGG ATTG 19522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CAAAAATCAA GGTTACTGCA TTGAGATTCA CGGAAACAGC TAGAGCTAGG ATTG 382 hqPGS_C09HBa0278J12.1-_SGN-E282111+ (21074 21028,20944 20855,20767 20639,19636 19522) ******************************************************************************** EST sequence 397 +strand 366 n (File: SGN-E279151+) 1 GCACGAGAGG AAAGTAGAAG CAGCAGGCGG AGCATCATGG GTATCGATCT AGTTGCCGGA 61 GGTAAGTCCA AAAAGACTAA GCGCATTGCA CCAAAATCCG ACGATGTTTA TCTCAAGCTT 121 CTCGTCAAGT TGTACCGATT TCTATCACGG AGGACTGGTA GTAAGTTCAA TGCTGTGATA 181 CTGAAGAGAC TCTTCATGAG CAAGATCAAT AAAGCTCCAT TGTCTCTATC ACGTTTGGTT 241 ACTTACATGA CTGGAAAGGA GGACAATATT GCTGTTGTTG TTGGGACTGT TACCGATGAT 301 GTTCGAGCTT ATGAAGTCCC AAAAATCAAG GTTACTGCAT TGAGATTCAC GGAAACAGCT 361 AGAGCT Predicted gene structure (within gDNA segment 21720 to 18919): Exon 1 21066 21028 ( 39 n); cDNA 1 39 ( 39 n); score: 0.897 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 40 129 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 130 258 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19529 ( 108 n); cDNA 259 366 ( 108 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E279151+ 1.000 366 1.000 C PGS_C09HBa0278J12.1-_SGN-E279151+ (21066 21028,20944 20855,20767 20639,19636 19529) Alignment (genomic DNA sequence = upper lines): GCGGCGGAGG AAAGTAGAAG CAGCAGGCGG AGCATCATGG TGAATATTTT TTTTTAGAAT 21007 || |||| |||||||||| |||||||||| ||||||||| GCACGAGAGG AAAGTAGAAG CAGCAGGCGG AGCATCATG. .......... .......... 39 ATTCCTGCAT TTGTTTTCAC GGACGCCATA GCTTGATTTT GTTATTTTGA TTTTCTATTT 20947 .......... .......... .......... .......... .......... .......... 39 AGGGTATCGA TCTAGTTGCC GGAGGTAAGT CCAAAAAGAC TAAGCGCATT GCACCAAAAT 20887 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GGTATCGA TCTAGTTGCC GGAGGTAAGT CCAAAAAGAC TAAGCGCATT GCACCAAAAT 97 CCGACGATGT TTATCTCAAG CTTCTCGTCA AGGTATTTTA TTTCACTATT GTCTTTATAG 20827 |||||||||| |||||||||| |||||||||| || CCGACGATGT TTATCTCAAG CTTCTCGTCA AG........ .......... .......... 129 ATTTAGTGCA TTTTTGGTTA CTATACTGAG AATTGGATGT TTAATTGTGT GAATAATAGT 20767 | .......... .......... .......... .......... .......... .........T 130 TGTACCGATT TCTATCACGG AGGACTGGTA GTAAGTTCAA TGCTGTGATA CTGAAGAGAC 20707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCGATT TCTATCACGG AGGACTGGTA GTAAGTTCAA TGCTGTGATA CTGAAGAGAC 190 TCTTCATGAG CAAGATCAAT AAAGCTCCAT TGTCTCTATC ACGTTTGGTT ACTTACATGA 20647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCATGAG CAAGATCAAT AAAGCTCCAT TGTCTCTATC ACGTTTGGTT ACTTACATGA 250 CTGGAAAGGT ATTTTATTCA TTCATTTTAG CTTTGTTTCA CCTTACACTG TTTGGATAGT 20587 |||||||| CTGGAAAG.. .......... .......... .......... .......... .......... 258 TTCATAATGT TGTATTGATT GTATCATTTT ATGTCGTTGT GTAATATTAT GATCAATAAT 20527 .......... .......... .......... .......... .......... .......... 258 TTGAATTATA AACTTACAAG TAAATAGCAT ACAGTGTAGA GCTAGACCTA TCTAATGTGC 20467 .......... .......... .......... .......... .......... .......... 258 CTTTATTTAG TGTTACCATA CAATAAAATT TGTATAACAA TCAAACTAAC AGTTAATTTA 20407 .......... .......... .......... .......... .......... .......... 258 TCCAACAACA CAATGAAATA CAATGTAACA ACCATCCAAA CATGCCTGCT AGTGATCTTT 20347 .......... .......... .......... .......... .......... .......... 258 GATTGGACAC ATCTACAGCG AGCAGTTATC AAAATATTCT TGCTTTATAC TAGCATCGTT 20287 .......... .......... .......... .......... .......... .......... 258 AAATTGTTAA TGGTATTAAC GACGTCCTGA GTAGCATTTA TGTGAATGAA ATTGCTAAAA 20227 .......... .......... .......... .......... .......... .......... 258 AGTAGTAATA TGCAGCGATT AGGACTAAAG GAGTGAGGAA TTCACATATC AGAGTGTACA 20167 .......... .......... .......... .......... .......... .......... 258 ATATAGCTTA ACACTTGGGG GCCATTTATA TGCCGGACAG GAATATAGAT AGTCTTGTGA 20107 .......... .......... .......... .......... .......... .......... 258 TAGAAATTAA CTACTGCGTA TTTCCTTTTT TGGTTACTTA TCCTAGGATG ACTTATATTC 20047 .......... .......... .......... .......... .......... .......... 258 GCTGTGATAA GTTATCCATT CTAGTGGATG GATTAATACA AGTATCAGGA TTACTATGAA 19987 .......... .......... .......... .......... .......... .......... 258 AATGGAAAAA ATACTCCCAA GGTTGCTCAA AACACTTTTT CTATTGAAGA AGGTGGAGGG 19927 .......... .......... .......... .......... .......... .......... 258 TTATCTTTGT ATACAACTTT TCCGAATGTC CCTTTTTTTA TTTCTTATCC TACATTGTAT 19867 .......... .......... .......... .......... .......... .......... 258 AAAGTGATGC ATAATTTTGC ATATACAGCA AAGTTATGTC CCATGATTAT TTATGCAATG 19807 .......... .......... .......... .......... .......... .......... 258 CATAATCTAT TCCTCAACCA TGCAGAGATT TATATTAGAA TTGAAATGTT AGATCTGTAA 19747 .......... .......... .......... .......... .......... .......... 258 TCAGAGTATG TTCCAGGATT GTTTGTTCTT GTACAGCAAA GTAAATAACC CTTGATATTA 19687 .......... .......... .......... .......... .......... .......... 258 CTGAAGTACT ATACAGTTTA TCTGAATTGG CTTGTGTATG ATGATGATAG GAGGACAATA 19627 |||||||||| .......... .......... .......... .......... .......... GAGGACAATA 268 TTGCTGTTGT TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA 19567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTGT TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC CCAAAAATCA 328 AGGTTACTGC ATTGAGATTC ACGGAAACAG CTAGAGCT 19529 |||||||||| |||||||||| |||||||||| |||||||| AGGTTACTGC ATTGAGATTC ACGGAAACAG CTAGAGCT 366 hqPGS_C09HBa0278J12.1-_SGN-E279151+ (21066 21028,20944 20855,20767 20639,19636 19529) ******************************************************************************** EST sequence 401 +strand 332 n (File: SGN-E247942+) 1 AGCAGCAGGC GGAGCATCAT GGGTATCGAT CTAGTTGCCG GAGGTAAGTC CAAAAAGACT 61 AAGCGCATTG CACCAAAATC CGACGATGTT TATCTCAAGC TTCTCGTCAA GTTGTACCGA 121 TTTCTATCAC GGAGGACTGG TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG 181 AGCAAGATCA ATAAAGCTCC ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG 241 GAGGACAATA TTGCTGTTGT TGTTGGGACT GTTACCGATG ATGTTCGAGC TTATGAAGTC 301 CCAAAAATCA AGGTTACTGC ATTGAGATTC AC Predicted gene structure (within gDNA segment 21745 to 18935): Exon 1 21048 21028 ( 21 n); cDNA 1 21 ( 21 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 20944 20855 ( 90 n); cDNA 22 111 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 112 240 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19636 19545 ( 92 n); cDNA 241 332 ( 92 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E247942+ 1.000 332 1.000 C PGS_C09HBa0278J12.1-_SGN-E247942+ (21048 21028,20944 20855,20767 20639,19636 19545) Alignment (genomic DNA sequence = upper lines): AGCAGCAGGC GGAGCATCAT GGTGAATATT TTTTTTTAGA ATATTCCTGC ATTTGTTTTC 20989 |||||||||| |||||||||| | AGCAGCAGGC GGAGCATCAT G......... .......... .......... .......... 21 ACGGACGCCA TAGCTTGATT TTGTTATTTT GATTTTCTAT TTAGGGTATC GATCTAGTTG 20929 |||||| |||||||||| .......... .......... .......... .......... ....GGTATC GATCTAGTTG 37 CCGGAGGTAA GTCCAAAAAG ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA 20869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGGTAA GTCCAAAAAG ACTAAGCGCA TTGCACCAAA ATCCGACGAT GTTTATCTCA 97 AGCTTCTCGT CAAGGTATTT TATTTCACTA TTGTCTTTAT AGATTTAGTG CATTTTTGGT 20809 |||||||||| |||| AGCTTCTCGT CAAG...... .......... .......... .......... .......... 111 TACTATACTG AGAATTGGAT GTTTAATTGT GTGAATAATA GTTGTACCGA TTTCTATCAC 20749 ||||||||| |||||||||| .......... .......... .......... .......... .TTGTACCGA TTTCTATCAC 130 GGAGGACTGG TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA 20689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGACTGG TAGTAAGTTC AATGCTGTGA TACTGAAGAG ACTCTTCATG AGCAAGATCA 190 ATAAAGCTCC ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG GTATTTTATT 20629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGCTCC ATTGTCTCTA TCACGTTTGG TTACTTACAT GACTGGAAAG .......... 240 CATTCATTTT AGCTTTGTTT CACCTTACAC TGTTTGGATA GTTTCATAAT GTTGTATTGA 20569 .......... .......... .......... .......... .......... .......... 240 TTGTATCATT TTATGTCGTT GTGTAATATT ATGATCAATA ATTTGAATTA TAAACTTACA 20509 .......... .......... .......... .......... .......... .......... 240 AGTAAATAGC ATACAGTGTA GAGCTAGACC TATCTAATGT GCCTTTATTT AGTGTTACCA 20449 .......... .......... .......... .......... .......... .......... 240 TACAATAAAA TTTGTATAAC AATCAAACTA ACAGTTAATT TATCCAACAA CACAATGAAA 20389 .......... .......... .......... .......... .......... .......... 240 TACAATGTAA CAACCATCCA AACATGCCTG CTAGTGATCT TTGATTGGAC ACATCTACAG 20329 .......... .......... .......... .......... .......... .......... 240 CGAGCAGTTA TCAAAATATT CTTGCTTTAT ACTAGCATCG TTAAATTGTT AATGGTATTA 20269 .......... .......... .......... .......... .......... .......... 240 ACGACGTCCT GAGTAGCATT TATGTGAATG AAATTGCTAA AAAGTAGTAA TATGCAGCGA 20209 .......... .......... .......... .......... .......... .......... 240 TTAGGACTAA AGGAGTGAGG AATTCACATA TCAGAGTGTA CAATATAGCT TAACACTTGG 20149 .......... .......... .......... .......... .......... .......... 240 GGGCCATTTA TATGCCGGAC AGGAATATAG ATAGTCTTGT GATAGAAATT AACTACTGCG 20089 .......... .......... .......... .......... .......... .......... 240 TATTTCCTTT TTTGGTTACT TATCCTAGGA TGACTTATAT TCGCTGTGAT AAGTTATCCA 20029 .......... .......... .......... .......... .......... .......... 240 TTCTAGTGGA TGGATTAATA CAAGTATCAG GATTACTATG AAAATGGAAA AAATACTCCC 19969 .......... .......... .......... .......... .......... .......... 240 AAGGTTGCTC AAAACACTTT TTCTATTGAA GAAGGTGGAG GGTTATCTTT GTATACAACT 19909 .......... .......... .......... .......... .......... .......... 240 TTTCCGAATG TCCCTTTTTT TATTTCTTAT CCTACATTGT ATAAAGTGAT GCATAATTTT 19849 .......... .......... .......... .......... .......... .......... 240 GCATATACAG CAAAGTTATG TCCCATGATT ATTTATGCAA TGCATAATCT ATTCCTCAAC 19789 .......... .......... .......... .......... .......... .......... 240 CATGCAGAGA TTTATATTAG AATTGAAATG TTAGATCTGT AATCAGAGTA TGTTCCAGGA 19729 .......... .......... .......... .......... .......... .......... 240 TTGTTTGTTC TTGTACAGCA AAGTAAATAA CCCTTGATAT TACTGAAGTA CTATACAGTT 19669 .......... .......... .......... .......... .......... .......... 240 TATCTGAATT GGCTTGTGTA TGATGATGAT AGGAGGACAA TATTGCTGTT GTTGTTGGGA 19609 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GAGGACAA TATTGCTGTT GTTGTTGGGA 268 CTGTTACCGA TGATGTTCGA GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT 19549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTACCGA TGATGTTCGA GCTTATGAAG TCCCAAAAAT CAAGGTTACT GCATTGAGAT 328 TCAC 19545 |||| TCAC 332 hqPGS_C09HBa0278J12.1-_SGN-E247942+ (21048 21028,20944 20855,20767 20639,19636 19545) ******************************************************************************** EST sequence 377 +strand 287 n (File: SGN-E277272+) 1 GCACGAGGGA AAGTAGAAGC TGCAGGCGGA GCATCATGGG TATCGAGGTA GTTGCCGGAG 61 GTAAGTCCAA ACAGACTAAG CGCATTGCAC CAAAATCCGA CGATGTTTAT CTCAAGCTTC 121 TCGTCAAGTT GTACCGATTT CTATCACGGA GGACTGGTAG TAAGTTCAAT GCTGTGATAC 181 TGAAGAGACT CTTCATGAGC AAGATCAATA AAGCTCCATT GTCTCTATCA CGTTTGGTTA 241 CTTACATGAC TGGAAAGGAG GACAATATTG CTGTTGTTGT TGGGACT Predicted gene structure (within gDNA segment 22014 to 18997): Exon 1 21062 21028 ( 35 n); cDNA 4 38 ( 35 n); score: 0.914 Intron 1 21027 20945 ( 83 n); Pd: 0.851 (s: 0), Pa: 0.999 (s: 0.94) Exon 2 20944 20855 ( 90 n); cDNA 39 128 ( 90 n); score: 0.967 Intron 2 20854 20768 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 3 20767 20639 ( 129 n); cDNA 129 257 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 0) Exon 4 19636 19607 ( 30 n); cDNA 258 287 ( 30 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E277272+ 0.986 284 0.990 C PGS_C09HBa0278J12.1-_SGN-E277272+ (21062 21028,20944 20855,20767 20639,19636 19607) Alignment (genomic DNA sequence = upper lines): CGGAGGAAAG TAGAAGCAGC AGGCGGAGCA TCATGGTGAA TATTTTTTTT TAGAATATTC 21003 || |||||| ||||||| || |||||||||| ||||| CGAGGGAAAG TAGAAGCTGC AGGCGGAGCA TCATG..... .......... .......... 38 CTGCATTTGT TTTCACGGAC GCCATAGCTT GATTTTGTTA TTTTGATTTT CTATTTAGGG 20943 || .......... .......... .......... .......... .......... ........GG 40 TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA 20883 |||||| || |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TATCGAGGTA GTTGCCGGAG GTAAGTCCAA ACAGACTAAG CGCATTGCAC CAAAATCCGA 100 CGATGTTTAT CTCAAGCTTC TCGTCAAGGT ATTTTATTTC ACTATTGTCT TTATAGATTT 20823 |||||||||| |||||||||| |||||||| CGATGTTTAT CTCAAGCTTC TCGTCAAG.. .......... .......... .......... 128 AGTGCATTTT TGGTTACTAT ACTGAGAATT GGATGTTTAA TTGTGTGAAT AATAGTTGTA 20763 ||||| .......... .......... .......... .......... .......... .....TTGTA 133 CCGATTTCTA TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT 20703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATTTCTA TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT 193 CATGAGCAAG ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG 20643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGCAAG ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG 253 AAAGGTATTT TATTCATTCA TTTTAGCTTT GTTTCACCTT ACACTGTTTG GATAGTTTCA 20583 |||| AAAG...... .......... .......... .......... .......... .......... 257 TAATGTTGTA TTGATTGTAT CATTTTATGT CGTTGTGTAA TATTATGATC AATAATTTGA 20523 .......... .......... .......... .......... .......... .......... 257 ATTATAAACT TACAAGTAAA TAGCATACAG TGTAGAGCTA GACCTATCTA ATGTGCCTTT 20463 .......... .......... .......... .......... .......... .......... 257 ATTTAGTGTT ACCATACAAT AAAATTTGTA TAACAATCAA ACTAACAGTT AATTTATCCA 20403 .......... .......... .......... .......... .......... .......... 257 ACAACACAAT GAAATACAAT GTAACAACCA TCCAAACATG CCTGCTAGTG ATCTTTGATT 20343 .......... .......... .......... .......... .......... .......... 257 GGACACATCT ACAGCGAGCA GTTATCAAAA TATTCTTGCT TTATACTAGC ATCGTTAAAT 20283 .......... .......... .......... .......... .......... .......... 257 TGTTAATGGT ATTAACGACG TCCTGAGTAG CATTTATGTG AATGAAATTG CTAAAAAGTA 20223 .......... .......... .......... .......... .......... .......... 257 GTAATATGCA GCGATTAGGA CTAAAGGAGT GAGGAATTCA CATATCAGAG TGTACAATAT 20163 .......... .......... .......... .......... .......... .......... 257 AGCTTAACAC TTGGGGGCCA TTTATATGCC GGACAGGAAT ATAGATAGTC TTGTGATAGA 20103 .......... .......... .......... .......... .......... .......... 257 AATTAACTAC TGCGTATTTC CTTTTTTGGT TACTTATCCT AGGATGACTT ATATTCGCTG 20043 .......... .......... .......... .......... .......... .......... 257 TGATAAGTTA TCCATTCTAG TGGATGGATT AATACAAGTA TCAGGATTAC TATGAAAATG 19983 .......... .......... .......... .......... .......... .......... 257 GAAAAAATAC TCCCAAGGTT GCTCAAAACA CTTTTTCTAT TGAAGAAGGT GGAGGGTTAT 19923 .......... .......... .......... .......... .......... .......... 257 CTTTGTATAC AACTTTTCCG AATGTCCCTT TTTTTATTTC TTATCCTACA TTGTATAAAG 19863 .......... .......... .......... .......... .......... .......... 257 TGATGCATAA TTTTGCATAT ACAGCAAAGT TATGTCCCAT GATTATTTAT GCAATGCATA 19803 .......... .......... .......... .......... .......... .......... 257 ATCTATTCCT CAACCATGCA GAGATTTATA TTAGAATTGA AATGTTAGAT CTGTAATCAG 19743 .......... .......... .......... .......... .......... .......... 257 AGTATGTTCC AGGATTGTTT GTTCTTGTAC AGCAAAGTAA ATAACCCTTG ATATTACTGA 19683 .......... .......... .......... .......... .......... .......... 257 AGTACTATAC AGTTTATCTG AATTGGCTTG TGTATGATGA TGATAGGAGG ACAATATTGC 19623 |||| |||||||||| .......... .......... .......... .......... ......GAGG ACAATATTGC 271 TGTTGTTGTT GGGACT 19607 |||||||||| |||||| TGTTGTTGTT GGGACT 287 hqPGS_C09HBa0278J12.1-_SGN-E277272+ (21062 21028,20944 20855,20767 20639,19636 19607) ******************************************************************************** EST sequence 444 +strand 623 n (File: SGN-E249562+) 1 AGAATCTATG TTTTCTCATC TGAAAGAGTT CAACCTATTC TTTAATGTAA TCTTCCCATA 61 TTTTATAAAC AATCTCTTCT CGATGAGCGT GCATATCCGA ATCAGATGAT CGAGAAGATG 121 AAGTGATGTT GTTACCCTGA GCCAATAGTT TGTCACTTTC ATCACCAACC ATATCATCAT 181 GTTCATATTC ATTGAATATT CCATCACTAC TTTGGTGTTC ACGTAAAAAA TTATTGGTTG 241 GTGTCAATAA ATATATTATT TTTGTAAAAT AAAAAGTTAA GGGTAAAAAT TGAATTTCTA 301 AAACTTTCCA AATAATGAAA TTTGGCCCAA ATACTAGTTT TTTCTATTAT TTGGAAATTT 361 GGAAAATTTG TCGAAAAAAT TTGTCAAGTA ATAAAAAAGT ATATGGACAA ACAAAATTTG 421 CCAAGTTTTT TCCCAAGTTT TACTTGCAAA ATTTATGGCC AAACGGGCAA GTCTTGACTA 481 GAACCTTCCT GCAAGTATTA TATGATATGT TTTCTATAAT TGAGATTGTT CATTTTAAGT 541 TAAAATTTGA TGAAAATACA AGCTTCATTT GATTTTCTGC TTAAAGCTGG ATAAAATGTG 601 TGCTTTCCTT AAATATCTAA AAT Predicted gene structure (within gDNA segment 22843 to 16829): Exon 1 22144 21913 ( 232 n); cDNA 1 232 ( 232 n); score: 0.927 Intron 1 21912 21523 ( 390 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.94) Exon 2 21522 21284 ( 239 n); cDNA 233 470 ( 238 n); score: 0.916 Intron 2 21283 19228 (2056 n); Pd: 0.000 (s: 0.88), Pa: 0.995 (s: 0) Exon 3 19227 19217 ( 11 n); cDNA 471 481 ( 11 n); score: 0.727 Intron 3 19216 18672 ( 545 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 18671 18637 ( 35 n); cDNA 482 515 ( 34 n); score: 0.629 MATCH C09HBa0278J12.1- SGN-E249562+ 0.921 517 0.830 C PGS_C09HBa0278J12.1-_SGN-E249562+ (22144 21913,21522 21284,19227 19217,18671 18637) Alignment (genomic DNA sequence = upper lines): AGAACCTATG CTTTCTCATC TGAAAGAGTT CAACCTATTC TTTAATATAA TCTTCCCACA 22085 |||| ||||| ||||||||| |||||||||| |||||||||| |||||| ||| |||||||| | AGAATCTATG TTTTCTCATC TGAAAGAGTT CAACCTATTC TTTAATGTAA TCTTCCCATA 60 TTTTATGAAC AATCTCTTCT CGATGAGCTT GCATTTTCGA ATCAGACGAT CGAGAAGATG 22025 |||||| ||| |||||||||| |||||||| | |||| | ||| |||||| ||| |||||||||| TTTTATAAAC AATCTCTTCT CGATGAGCGT GCATATCCGA ATCAGATGAT CGAGAAGATG 120 AAGCAATGTT GTTACCCTAA GCCAGTAGTT CGTCACTTTC ATTAACAACC ATATCATCAT 21965 ||| ||||| |||||||| | |||| ||||| ||||||||| || | ||||| |||||||||| AAGTGATGTT GTTACCCTGA GCCAATAGTT TGTCACTTTC ATCACCAACC ATATCATCAT 180 TTTCATATTC ATTGAATATT CCATCACTAC TTTGGTGTTC ACGTAAAAAA TTATGCAATA 21905 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTTCATATTC ATTGAATATT CCATCACTAC TTTGGTGTTC ACGTAAAAAA TT........ 232 CAGCGCAAGC AATTACTATT TTCACTTGCA TGTCACATTC ATAGTTGTTC ATGCATTGTC 21845 .......... .......... .......... .......... .......... .......... 232 TTAGTATTCT GAATCTACTT TTCCACGCAC CAAAAGTTCA TTCAATTACA TTGCGTAGAG 21785 .......... .......... .......... .......... .......... .......... 232 AAGCATGTCT ATAGTTAAAT AGCTCTTTTT CATTCTTAGG CTCTCTTTCA CTTCCTCGGT 21725 .......... .......... .......... .......... .......... .......... 232 AGTCCTGCAA ATGATAGCGC ATACCAATGA ATGGAGCTAA AAATCTCTTG TGTTCCGTAG 21665 .......... .......... .......... .......... .......... .......... 232 ACCAGCATCA ACAACGTAAT ATTTATCTAC CAAAATAAAA TTAATGCAAT TCATGTTTTA 21605 .......... .......... .......... .......... .......... .......... 232 TTTAGTAGCT AGTTCATTAA GACTAACTGT AACAAATGAA TGTATGAAAT CAAAAGAATG 21545 .......... .......... .......... .......... .......... .......... 232 CATGTAGAAG GGAGCTAATT GAATTGGTTG GTGTCAATAA ATATTTTTTT TTTATAAAAT 21485 |||||||| |||||||||| |||| || || ||| |||||| .......... .......... ..ATTGGTTG GTGTCAATAA ATATATTATT TTTGTAAAAT 270 AAAAAGTTAA GGGTAAAAAT TGAATTTCTA AAACTTTCCA AATAACGAAA TTCGGCCCAA 21425 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || ||||||| AAAAAGTTAA GGGTAAAAAT TGAATTTCTA AAACTTTCCA AATAATGAAA TTTGGCCCAA 330 ATACTAGTTT TTTCTAGTAT TTGGGAATTT GAAAAATTTG CCAAAAAAAT TTGCCAAATA 21365 |||||||||| |||||| ||| |||| ||||| | |||||||| | ||||||| ||| ||| || ATACTAGTTT TTTCTATTAT TTGGAAATTT GGAAAATTTG TCGAAAAAAT TTGTCAAGTA 390 ATAAAAAAGT GTATGGACAA ACAAAATTTT GTCAAGTTTT TCCCCAAATT TTACTTGCAA 21305 |||||||||| ||||||||| |||||| ||| | |||||||| | ||||| || |||||||||| ATAAAAAAGT ATATGGACAA ACAAAA-TTT GCCAAGTTTT TTCCCAAGTT TTACTTGCAA 449 AATTTATGGG CAAACGGGCC CTTAAACTTT TTTTTAAACG GAACAAAAAT TAAATAATCG 21245 ||||||||| ||||||||| AATTTATGGC CAAACGGGCA A......... .......... .......... .......... 470 TACTAAAAAA GTTCTTATTT GTGGATATCT CCTTCACACA TAGTATCTTG GGCCTATTGG 21185 .......... .......... .......... .......... .......... .......... 470 GCTGTCACCA ACCAAGCCCA TTAAAAATCT GTATTAGGGT TTTTTTCAAA AAGGGTTAAA 21125 .......... .......... .......... .......... .......... .......... 470 AAGAATCTTC ATCATATTTT TCCATTCTCC GAACAGAAAA ACCTATCAGC AGCAGGCGGC 21065 .......... .......... .......... .......... .......... .......... 470 GGCGGAGGAA AGTAGAAGCA GCAGGCGGAG CATCATGGTG AATATTTTTT TTTAGAATAT 21005 .......... .......... .......... .......... .......... .......... 470 TCCTGCATTT GTTTTCACGG ACGCCATAGC TTGATTTTGT TATTTTGATT TTCTATTTAG 20945 .......... .......... .......... .......... .......... .......... 470 GGTATCGATC TAGTTGCCGG AGGTAAGTCC AAAAAGACTA AGCGCATTGC ACCAAAATCC 20885 .......... .......... .......... .......... .......... .......... 470 GACGATGTTT ATCTCAAGCT TCTCGTCAAG GTATTTTATT TCACTATTGT CTTTATAGAT 20825 .......... .......... .......... .......... .......... .......... 470 TTAGTGCATT TTTGGTTACT ATACTGAGAA TTGGATGTTT AATTGTGTGA ATAATAGTTG 20765 .......... .......... .......... .......... .......... .......... 470 TACCGATTTC TATCACGGAG GACTGGTAGT AAGTTCAATG CTGTGATACT GAAGAGACTC 20705 .......... .......... .......... .......... .......... .......... 470 TTCATGAGCA AGATCAATAA AGCTCCATTG TCTCTATCAC GTTTGGTTAC TTACATGACT 20645 .......... .......... .......... .......... .......... .......... 470 GGAAAGGTAT TTTATTCATT CATTTTAGCT TTGTTTCACC TTACACTGTT TGGATAGTTT 20585 .......... .......... .......... .......... .......... .......... 470 CATAATGTTG TATTGATTGT ATCATTTTAT GTCGTTGTGT AATATTATGA TCAATAATTT 20525 .......... .......... .......... .......... .......... .......... 470 GAATTATAAA CTTACAAGTA AATAGCATAC AGTGTAGAGC TAGACCTATC TAATGTGCCT 20465 .......... .......... .......... .......... .......... .......... 470 TTATTTAGTG TTACCATACA ATAAAATTTG TATAACAATC AAACTAACAG TTAATTTATC 20405 .......... .......... .......... .......... .......... .......... 470 CAACAACACA ATGAAATACA ATGTAACAAC CATCCAAACA TGCCTGCTAG TGATCTTTGA 20345 .......... .......... .......... .......... .......... .......... 470 TTGGACACAT CTACAGCGAG CAGTTATCAA AATATTCTTG CTTTATACTA GCATCGTTAA 20285 .......... .......... .......... .......... .......... .......... 470 ATTGTTAATG GTATTAACGA CGTCCTGAGT AGCATTTATG TGAATGAAAT TGCTAAAAAG 20225 .......... .......... .......... .......... .......... .......... 470 TAGTAATATG CAGCGATTAG GACTAAAGGA GTGAGGAATT CACATATCAG AGTGTACAAT 20165 .......... .......... .......... .......... .......... .......... 470 ATAGCTTAAC ACTTGGGGGC CATTTATATG CCGGACAGGA ATATAGATAG TCTTGTGATA 20105 .......... .......... .......... .......... .......... .......... 470 GAAATTAACT ACTGCGTATT TCCTTTTTTG GTTACTTATC CTAGGATGAC TTATATTCGC 20045 .......... .......... .......... .......... .......... .......... 470 TGTGATAAGT TATCCATTCT AGTGGATGGA TTAATACAAG TATCAGGATT ACTATGAAAA 19985 .......... .......... .......... .......... .......... .......... 470 TGGAAAAAAT ACTCCCAAGG TTGCTCAAAA CACTTTTTCT ATTGAAGAAG GTGGAGGGTT 19925 .......... .......... .......... .......... .......... .......... 470 ATCTTTGTAT ACAACTTTTC CGAATGTCCC TTTTTTTATT TCTTATCCTA CATTGTATAA 19865 .......... .......... .......... .......... .......... .......... 470 AGTGATGCAT AATTTTGCAT ATACAGCAAA GTTATGTCCC ATGATTATTT ATGCAATGCA 19805 .......... .......... .......... .......... .......... .......... 470 TAATCTATTC CTCAACCATG CAGAGATTTA TATTAGAATT GAAATGTTAG ATCTGTAATC 19745 .......... .......... .......... .......... .......... .......... 470 AGAGTATGTT CCAGGATTGT TTGTTCTTGT ACAGCAAAGT AAATAACCCT TGATATTACT 19685 .......... .......... .......... .......... .......... .......... 470 GAAGTACTAT ACAGTTTATC TGAATTGGCT TGTGTATGAT GATGATAGGA GGACAATATT 19625 .......... .......... .......... .......... .......... .......... 470 GCTGTTGTTG TTGGGACTGT TACCGATGAT GTTCGAGCTT ATGAAGTCCC AAAAATCAAG 19565 .......... .......... .......... .......... .......... .......... 470 GTTACTGCAT TGAGATTCAC GGAAACAGCT AGAGCTAGGA TTGAGAAGGC TGGAGGAGAA 19505 .......... .......... .......... .......... .......... .......... 470 TGTTTGACCT TTGATCAGCT TGCTCTCAGA GCCCCTCTTG GGCAGAACAC TGTACGGAAC 19445 .......... .......... .......... .......... .......... .......... 470 TTCTCTCTCT CATCAGTTTG CATTTTTATG CCTTTTCTTT CATCAATCAA GTGAATAATT 19385 .......... .......... .......... .......... .......... .......... 470 AGAGAATATG CTGTAGTGCT CTTCACTAGT ATATAATAAC AAACCGAGGT GTTTTTAGAA 19325 .......... .......... .......... .......... .......... .......... 470 TTGTGGTTTG AATCTCGTCC TGCATAGGAA ATGATTATGT ATTCATGGTA GAGGTAACAT 19265 .......... .......... .......... .......... .......... .......... 470 TGGCTAGTCA TTTGTTTTGT AATGCTTTCT TGATCAGGTT TTGCTTAGGG GTCCAAAGAA 19205 || ||| ||| .......... .......... .......... .......GTC TTGACTAG.. .......... 481 CTCAAGGGAG GCCGTTAAGC ACTTTGGTAA AGCACCTGGT GTCCCACACA GCCACACAAA 19145 .......... .......... .......... .......... .......... .......... 481 GCCTTATGTT CGCGCAAAGG GAAGGAAGTT TGAGCGAGCA AGAGGAAAGA GAAATAGCAG 19085 .......... .......... .......... .......... .......... .......... 481 AGGCTACAAG GCTTGAGGAA GTGCTGGTGT TTGAATGCAC ATTGATAGAG TTTCTATTAG 19025 .......... .......... .......... .......... .......... .......... 481 AAGTATTTGC CAACCTACTT TTACCATTAA TAGTATCTTG TTGGATTTTC TTATTTCAAC 18965 .......... .......... .......... .......... .......... .......... 481 TCTGTTTCTC TTACACACTC CAGCATCATA TTGCTGATTT TTGAATGTGT TATCTGTTTT 18905 .......... .......... .......... .......... .......... .......... 481 GCAAAATTAA TCTCTATTTA GAGACTGAAT CTTTACAACA AGGTTATGCT TGGTAATTTA 18845 .......... .......... .......... .......... .......... .......... 481 TTTTGTTTTA TACTAATTCC TCTTAATACA TTTTTATAAT TAGCTATATT ACCCTTATCT 18785 .......... .......... .......... .......... .......... .......... 481 ATTATGATTT AAACAGCTAC AAATAAAAGT TATTACTTTT ATTATTTGAA TCACTCTTTA 18725 .......... .......... .......... .......... .......... .......... 481 AAAACCCATT AGATTAATGT TCAGTTCTTG AGGTTTGAAG ATTTGTTAAA CACAACTTTC 18665 ||| ||| .......... .......... .......... .......... .......... ...AACCTTC 488 ATTGTTTTTG TCGTTTGATC TTTTTTCT 18637 || | | | |||| | |||||| -CTGCAAGTA TTATATGATA TGTTTTCT 515 hqPGS_C09HBa0278J12.1-_SGN-E249562+ (22144 21913,21522 21284) ******************************************************************************** EST sequence 29 -strand 750 n (File: SGN-E379112-) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 121 ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 181 CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 241 ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 301 ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 361 TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 421 ACTCTAGCTA CTCCATTTAG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAGA 481 GCTTGTATAA AATGGAGAGA AGGAAAAAGA TTTAGAATTA TCGCTTGTGA ATGACAAGAA 541 AAGATTGCAA AATAAGAATT TAGTTGTTTT GCTTTAATAA GTTCCTTAAT CATTTCATTA 601 GGGGTGTAAT AATAGAATAA GAAAAGGGGC TTGAAATTCA GCTATAAACA ACCAGGGCAT 661 AGGTAACGTG TATACTTGAT GTTATAGGTG AGATTTCAGC TTCTCAATTT CGTCTAATTA 721 ACGGAATATA TATATATATA TATTCCCACA Predicted gene structure (within gDNA segment 25739 to 17525): Exon 1 23099 22608 ( 492 n); cDNA 3 468 ( 466 n); score: 0.728 Intron 1 22607 19228 (3380 n); Pd: 0.900 (s: 0.80), Pa: 0.995 (s: 0) Exon 2 19227 19217 ( 11 n); cDNA 469 479 ( 11 n); score: 0.636 MATCH C09HBa0278J12.1- SGN-E379112- 0.728 503 0.671 C PGS_C09HBa0278J12.1-_SGN-E379112- (23099 22608,19227 19217) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATAC- AAAACAAAAA -CACAATTTA TACACTTTTG TTGTATAAAG CGAGAGAAAA 22982 ||||||||| |||||||||| |||||| || ||||||| || |||||||||| |||||||| GCTTTATACA AAAACAAAAA NCACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTTG CTGCAATTGT ATAATCGCTG GCCTATTTCG CTGAAATTAT TGTATAAATT 22922 |||||||| |||||||| | ||||| | | | || | | | | | | || | TTGTATTTCA CTGCAATTAT ATAAT---TC -AC-AATT-G -T-ATAAT-T CGT-T-GGCC 170 TTGCATTTGT ATACAATTGA ATCGAAATAA AATGTTTGTA TATCGTATAA TTAATTGTAT 22862 || ||| | | ||| | | | ||| ||| |||||||||| | |||||| |||| ||||| TT---TTTCT CTGCAA-T-A TTTGAAGTAA AATGTTTGTA ATTTGTATAA TTAAGTGTAT 225 AGCACGAAGA TATATATTTT TGCATGTGTA TATACAATTT TCTCTCGCTT TATACAAAAC 22802 | |||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| AACACGAAGA TATATATTTT TACATGTGTA TATACAATTT TCTCTCGCTT TATACAAAAT 285 AGAAACACAA TTTATGCCCT TCTATTCTAC AAAGCGAGAG AGTCGAGC-A G-AGGGAGAG 22744 ||||||| || ||||| | || ||| | || | ||||||| || ||||| | | | |||||| AGAAACAGAA TTTATACACT TCT-GTGTAT ATAGCGAGAT AGGCGAGCGA GAATGGAGAG 344 AAACGAGTGA GAATGTGAAA GAGGCGACTG AGAGTTTAGG GAGAGAGGCG ACTGACAAAC 22684 |||| || | || | |||| || | | | | || | | | | | ||| TGGCGAGCGA G-ATTTTTGG GAGG-GA--G A-CGCCT--- GACA-A-AC- TTTAGCTAAC 393 GTTTGCTATG AGCCACAATT AAATCAAACA GTAGCTACTC AATTTATTTT AAATTATTAA 22624 |||||||||| ||||||| ||||||||| ||||||||| ||||| || | |||| || GTTTGCTATG GAGCACAATT AAATCAAACT CTAGCTACTC CATTTA-GTT AGATTACTAG 452 TTTGCTATTT TTTACAATAT CCTATATATA TATATATATC AAAAAGGGGT AATTTATCAA 22564 ||||||||| | |||| TTTGCTATTA TATACA.... .......... .......... .......... .......... 468 AAATCGTAAC AAGACAAGTT TTGCTCATTA GAGTTTATGA TTAAATTTAG CTAGCGTTTG 22504 .......... .......... .......... .......... .......... .......... 468 GCCATAGATA TTCAAATATT TTTGGCAAAT ATTATTTGGA TGAAAATTTG GGTGAAATTT 22444 .......... .......... .......... .......... .......... .......... 468 TACCATGTGT TTGGCCATAG AATTTGAGAA ACATATTTCA TTTTTTTAAG AAATATGATT 22384 .......... .......... .......... .......... .......... .......... 468 TATACACATA AGTTTTTAAA ACTATCAAGC TAACCATAAA TTTGTATTAC ATAGCACAAT 22324 .......... .......... .......... .......... .......... .......... 468 AGAAATCTCA CGTAACAAGA TTTATGACTT CCGCAACAAA TCAACAAGAA TCATTACAGT 22264 .......... .......... .......... .......... .......... .......... 468 AAATATTCGT ATAGTGAAAA GGTCTTGGTA CAAATCATGA TAATGAAAAT ACAACTAATA 22204 .......... .......... .......... .......... .......... .......... 468 TAAATTCGGG GAAAAAAAAA GAGAAGAAAA CAAAAGGAAA TAAATATTGC AATCACGGAA 22144 .......... .......... .......... .......... .......... .......... 468 GAACCTATGC TTTCTCATCT GAAAGAGTTC AACCTATTCT TTAATATAAT CTTCCCACAT 22084 .......... .......... .......... .......... .......... .......... 468 TTTATGAACA ATCTCTTCTC GATGAGCTTG CATTTTCGAA TCAGACGATC GAGAAGATGA 22024 .......... .......... .......... .......... .......... .......... 468 AGCAATGTTG TTACCCTAAG CCAGTAGTTC GTCACTTTCA TTAACAACCA TATCATCATT 21964 .......... .......... .......... .......... .......... .......... 468 TTCATATTCA TTGAATATTC CATCACTACT TTGGTGTTCA CGTAAAAAAT TATGCAATAC 21904 .......... .......... .......... .......... .......... .......... 468 AGCGCAAGCA ATTACTATTT TCACTTGCAT GTCACATTCA TAGTTGTTCA TGCATTGTCT 21844 .......... .......... .......... .......... .......... .......... 468 TAGTATTCTG AATCTACTTT TCCACGCACC AAAAGTTCAT TCAATTACAT TGCGTAGAGA 21784 .......... .......... .......... .......... .......... .......... 468 AGCATGTCTA TAGTTAAATA GCTCTTTTTC ATTCTTAGGC TCTCTTTCAC TTCCTCGGTA 21724 .......... .......... .......... .......... .......... .......... 468 GTCCTGCAAA TGATAGCGCA TACCAATGAA TGGAGCTAAA AATCTCTTGT GTTCCGTAGA 21664 .......... .......... .......... .......... .......... .......... 468 CCAGCATCAA CAACGTAATA TTTATCTACC AAAATAAAAT TAATGCAATT CATGTTTTAT 21604 .......... .......... .......... .......... .......... .......... 468 TTAGTAGCTA GTTCATTAAG ACTAACTGTA ACAAATGAAT GTATGAAATC AAAAGAATGC 21544 .......... .......... .......... .......... .......... .......... 468 ATGTAGAAGG GAGCTAATTG AATTGGTTGG TGTCAATAAA TATTTTTTTT TTATAAAATA 21484 .......... .......... .......... .......... .......... .......... 468 AAAAGTTAAG GGTAAAAATT GAATTTCTAA AACTTTCCAA ATAACGAAAT TCGGCCCAAA 21424 .......... .......... .......... .......... .......... .......... 468 TACTAGTTTT TTCTAGTATT TGGGAATTTG AAAAATTTGC CAAAAAAATT TGCCAAATAA 21364 .......... .......... .......... .......... .......... .......... 468 TAAAAAAGTG TATGGACAAA CAAAATTTTG TCAAGTTTTT CCCCAAATTT TACTTGCAAA 21304 .......... .......... .......... .......... .......... .......... 468 ATTTATGGGC AAACGGGCCC TTAAACTTTT TTTTAAACGG AACAAAAATT AAATAATCGT 21244 .......... .......... .......... .......... .......... .......... 468 ACTAAAAAAG TTCTTATTTG TGGATATCTC CTTCACACAT AGTATCTTGG GCCTATTGGG 21184 .......... .......... .......... .......... .......... .......... 468 CTGTCACCAA CCAAGCCCAT TAAAAATCTG TATTAGGGTT TTTTTCAAAA AGGGTTAAAA 21124 .......... .......... .......... .......... .......... .......... 468 AGAATCTTCA TCATATTTTT CCATTCTCCG AACAGAAAAA CCTATCAGCA GCAGGCGGCG 21064 .......... .......... .......... .......... .......... .......... 468 GCGGAGGAAA GTAGAAGCAG CAGGCGGAGC ATCATGGTGA ATATTTTTTT TTAGAATATT 21004 .......... .......... .......... .......... .......... .......... 468 CCTGCATTTG TTTTCACGGA CGCCATAGCT TGATTTTGTT ATTTTGATTT TCTATTTAGG 20944 .......... .......... .......... .......... .......... .......... 468 GTATCGATCT AGTTGCCGGA GGTAAGTCCA AAAAGACTAA GCGCATTGCA CCAAAATCCG 20884 .......... .......... .......... .......... .......... .......... 468 ACGATGTTTA TCTCAAGCTT CTCGTCAAGG TATTTTATTT CACTATTGTC TTTATAGATT 20824 .......... .......... .......... .......... .......... .......... 468 TAGTGCATTT TTGGTTACTA TACTGAGAAT TGGATGTTTA ATTGTGTGAA TAATAGTTGT 20764 .......... .......... .......... .......... .......... .......... 468 ACCGATTTCT ATCACGGAGG ACTGGTAGTA AGTTCAATGC TGTGATACTG AAGAGACTCT 20704 .......... .......... .......... .......... .......... .......... 468 TCATGAGCAA GATCAATAAA GCTCCATTGT CTCTATCACG TTTGGTTACT TACATGACTG 20644 .......... .......... .......... .......... .......... .......... 468 GAAAGGTATT TTATTCATTC ATTTTAGCTT TGTTTCACCT TACACTGTTT GGATAGTTTC 20584 .......... .......... .......... .......... .......... .......... 468 ATAATGTTGT ATTGATTGTA TCATTTTATG TCGTTGTGTA ATATTATGAT CAATAATTTG 20524 .......... .......... .......... .......... .......... .......... 468 AATTATAAAC TTACAAGTAA ATAGCATACA GTGTAGAGCT AGACCTATCT AATGTGCCTT 20464 .......... .......... .......... .......... .......... .......... 468 TATTTAGTGT TACCATACAA TAAAATTTGT ATAACAATCA AACTAACAGT TAATTTATCC 20404 .......... .......... .......... .......... .......... .......... 468 AACAACACAA TGAAATACAA TGTAACAACC ATCCAAACAT GCCTGCTAGT GATCTTTGAT 20344 .......... .......... .......... .......... .......... .......... 468 TGGACACATC TACAGCGAGC AGTTATCAAA ATATTCTTGC TTTATACTAG CATCGTTAAA 20284 .......... .......... .......... .......... .......... .......... 468 TTGTTAATGG TATTAACGAC GTCCTGAGTA GCATTTATGT GAATGAAATT GCTAAAAAGT 20224 .......... .......... .......... .......... .......... .......... 468 AGTAATATGC AGCGATTAGG ACTAAAGGAG TGAGGAATTC ACATATCAGA GTGTACAATA 20164 .......... .......... .......... .......... .......... .......... 468 TAGCTTAACA CTTGGGGGCC ATTTATATGC CGGACAGGAA TATAGATAGT CTTGTGATAG 20104 .......... .......... .......... .......... .......... .......... 468 AAATTAACTA CTGCGTATTT CCTTTTTTGG TTACTTATCC TAGGATGACT TATATTCGCT 20044 .......... .......... .......... .......... .......... .......... 468 GTGATAAGTT ATCCATTCTA GTGGATGGAT TAATACAAGT ATCAGGATTA CTATGAAAAT 19984 .......... .......... .......... .......... .......... .......... 468 GGAAAAAATA CTCCCAAGGT TGCTCAAAAC ACTTTTTCTA TTGAAGAAGG TGGAGGGTTA 19924 .......... .......... .......... .......... .......... .......... 468 TCTTTGTATA CAACTTTTCC GAATGTCCCT TTTTTTATTT CTTATCCTAC ATTGTATAAA 19864 .......... .......... .......... .......... .......... .......... 468 GTGATGCATA ATTTTGCATA TACAGCAAAG TTATGTCCCA TGATTATTTA TGCAATGCAT 19804 .......... .......... .......... .......... .......... .......... 468 AATCTATTCC TCAACCATGC AGAGATTTAT ATTAGAATTG AAATGTTAGA TCTGTAATCA 19744 .......... .......... .......... .......... .......... .......... 468 GAGTATGTTC CAGGATTGTT TGTTCTTGTA CAGCAAAGTA AATAACCCTT GATATTACTG 19684 .......... .......... .......... .......... .......... .......... 468 AAGTACTATA CAGTTTATCT GAATTGGCTT GTGTATGATG ATGATAGGAG GACAATATTG 19624 .......... .......... .......... .......... .......... .......... 468 CTGTTGTTGT TGGGACTGTT ACCGATGATG TTCGAGCTTA TGAAGTCCCA AAAATCAAGG 19564 .......... .......... .......... .......... .......... .......... 468 TTACTGCATT GAGATTCACG GAAACAGCTA GAGCTAGGAT TGAGAAGGCT GGAGGAGAAT 19504 .......... .......... .......... .......... .......... .......... 468 GTTTGACCTT TGATCAGCTT GCTCTCAGAG CCCCTCTTGG GCAGAACACT GTACGGAACT 19444 .......... .......... .......... .......... .......... .......... 468 TCTCTCTCTC ATCAGTTTGC ATTTTTATGC CTTTTCTTTC ATCAATCAAG TGAATAATTA 19384 .......... .......... .......... .......... .......... .......... 468 GAGAATATGC TGTAGTGCTC TTCACTAGTA TATAATAACA AACCGAGGTG TTTTTAGAAT 19324 .......... .......... .......... .......... .......... .......... 468 TGTGGTTTGA ATCTCGTCCT GCATAGGAAA TGATTATGTA TTCATGGTAG AGGTAACATT 19264 .......... .......... .......... .......... .......... .......... 468 GGCTAGTCAT TTGTTTTGTA ATGCTTTCTT GATCAGGTTT TGCTTAG 19217 ||| | | || .......... .......... .......... ......ATTT TCCCAAG 479 hqPGS_C09HBa0278J12.1-_SGN-E379112- (23099 22608) ******************************************************************************** EST sequence 370 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 25719 to 18303): Exon 1 23099 22608 ( 492 n); cDNA 3 467 ( 465 n); score: 0.733 Intron 1 22607 19228 (3380 n); Pd: 0.900 (s: 0.80), Pa: 0.995 (s: 0) Exon 2 19227 19217 ( 11 n); cDNA 468 478 ( 11 n); score: 0.636 MATCH C09HBa0278J12.1- SGN-E394609+ 0.733 503 0.822 C PGS_C09HBa0278J12.1-_SGN-E394609+ (23099 22608,19227 19217) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || | | |||| || | | TGTATTTCAC TGCAATTATA TAAT---T-- CACAATT-G- TATAATT--C GT-T-GGCCT 170 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | ||| | | ||| | | | ||| |||| ||||||||| | ||||||| ||| |||||| T---TTTCTC TGCAA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 225 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 285 GAAACACAAT TTATGCCCTT CTATTCTACA AAGCGAGAGA GTCGAGC-AG -AGGGAGAGA 22743 |||||| ||| |||| | ||| || | || | ||||||| | | ||||| || | |||||| GAAACAGAAT TTATACACTT CT-GTGTATA TAGCGAGATA GGCGAGCGAG AATGGAGAGT 344 AACGAGTGAG AATGTGAAAG AGGCGACTGA GAGTTTAGGG AGAGAGGCGA CTGACAAACG 22683 |||| ||| || | | ||| || || | | | | | | | | | |||| GGCGAGCGAG -ATTTTTGGG AGG-GA--GA -CGCCT---G ACA-A-AC-T TTAGCTAACG 393 TTTGCTATGA GCCACAATTA AATCAAACAG TAGCTACTCA ATTTATTTTA AATTATTAAT 22623 ||||||||| |||||||| |||||||| ||||||||| ||||| ||| |||| || | TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC ATTTA-GTTA GATTACTAGT 452 TTGCTATTTT TTACAATATC CTATATATAT ATATATATCA AAAAGGGGTA ATTTATCAAA 22563 |||||||| | |||| TTGCTATTAT ATACA..... .......... .......... .......... .......... 467 AATCGTAACA AGACAAGTTT TGCTCATTAG AGTTTATGAT TAAATTTAGC TAGCGTTTGG 22503 .......... .......... .......... .......... .......... .......... 467 CCATAGATAT TCAAATATTT TTGGCAAATA TTATTTGGAT GAAAATTTGG GTGAAATTTT 22443 .......... .......... .......... .......... .......... .......... 467 ACCATGTGTT TGGCCATAGA ATTTGAGAAA CATATTTCAT TTTTTTAAGA AATATGATTT 22383 .......... .......... .......... .......... .......... .......... 467 ATACACATAA GTTTTTAAAA CTATCAAGCT AACCATAAAT TTGTATTACA TAGCACAATA 22323 .......... .......... .......... .......... .......... .......... 467 GAAATCTCAC GTAACAAGAT TTATGACTTC CGCAACAAAT CAACAAGAAT CATTACAGTA 22263 .......... .......... .......... .......... .......... .......... 467 AATATTCGTA TAGTGAAAAG GTCTTGGTAC AAATCATGAT AATGAAAATA CAACTAATAT 22203 .......... .......... .......... .......... .......... .......... 467 AAATTCGGGG AAAAAAAAAG AGAAGAAAAC AAAAGGAAAT AAATATTGCA ATCACGGAAG 22143 .......... .......... .......... .......... .......... .......... 467 AACCTATGCT TTCTCATCTG AAAGAGTTCA ACCTATTCTT TAATATAATC TTCCCACATT 22083 .......... .......... .......... .......... .......... .......... 467 TTATGAACAA TCTCTTCTCG ATGAGCTTGC ATTTTCGAAT CAGACGATCG AGAAGATGAA 22023 .......... .......... .......... .......... .......... .......... 467 GCAATGTTGT TACCCTAAGC CAGTAGTTCG TCACTTTCAT TAACAACCAT ATCATCATTT 21963 .......... .......... .......... .......... .......... .......... 467 TCATATTCAT TGAATATTCC ATCACTACTT TGGTGTTCAC GTAAAAAATT ATGCAATACA 21903 .......... .......... .......... .......... .......... .......... 467 GCGCAAGCAA TTACTATTTT CACTTGCATG TCACATTCAT AGTTGTTCAT GCATTGTCTT 21843 .......... .......... .......... .......... .......... .......... 467 AGTATTCTGA ATCTACTTTT CCACGCACCA AAAGTTCATT CAATTACATT GCGTAGAGAA 21783 .......... .......... .......... .......... .......... .......... 467 GCATGTCTAT AGTTAAATAG CTCTTTTTCA TTCTTAGGCT CTCTTTCACT TCCTCGGTAG 21723 .......... .......... .......... .......... .......... .......... 467 TCCTGCAAAT GATAGCGCAT ACCAATGAAT GGAGCTAAAA ATCTCTTGTG TTCCGTAGAC 21663 .......... .......... .......... .......... .......... .......... 467 CAGCATCAAC AACGTAATAT TTATCTACCA AAATAAAATT AATGCAATTC ATGTTTTATT 21603 .......... .......... .......... .......... .......... .......... 467 TAGTAGCTAG TTCATTAAGA CTAACTGTAA CAAATGAATG TATGAAATCA AAAGAATGCA 21543 .......... .......... .......... .......... .......... .......... 467 TGTAGAAGGG AGCTAATTGA ATTGGTTGGT GTCAATAAAT ATTTTTTTTT TATAAAATAA 21483 .......... .......... .......... .......... .......... .......... 467 AAAGTTAAGG GTAAAAATTG AATTTCTAAA ACTTTCCAAA TAACGAAATT CGGCCCAAAT 21423 .......... .......... .......... .......... .......... .......... 467 ACTAGTTTTT TCTAGTATTT GGGAATTTGA AAAATTTGCC AAAAAAATTT GCCAAATAAT 21363 .......... .......... .......... .......... .......... .......... 467 AAAAAAGTGT ATGGACAAAC AAAATTTTGT CAAGTTTTTC CCCAAATTTT ACTTGCAAAA 21303 .......... .......... .......... .......... .......... .......... 467 TTTATGGGCA AACGGGCCCT TAAACTTTTT TTTAAACGGA ACAAAAATTA AATAATCGTA 21243 .......... .......... .......... .......... .......... .......... 467 CTAAAAAAGT TCTTATTTGT GGATATCTCC TTCACACATA GTATCTTGGG CCTATTGGGC 21183 .......... .......... .......... .......... .......... .......... 467 TGTCACCAAC CAAGCCCATT AAAAATCTGT ATTAGGGTTT TTTTCAAAAA GGGTTAAAAA 21123 .......... .......... .......... .......... .......... .......... 467 GAATCTTCAT CATATTTTTC CATTCTCCGA ACAGAAAAAC CTATCAGCAG CAGGCGGCGG 21063 .......... .......... .......... .......... .......... .......... 467 CGGAGGAAAG TAGAAGCAGC AGGCGGAGCA TCATGGTGAA TATTTTTTTT TAGAATATTC 21003 .......... .......... .......... .......... .......... .......... 467 CTGCATTTGT TTTCACGGAC GCCATAGCTT GATTTTGTTA TTTTGATTTT CTATTTAGGG 20943 .......... .......... .......... .......... .......... .......... 467 TATCGATCTA GTTGCCGGAG GTAAGTCCAA AAAGACTAAG CGCATTGCAC CAAAATCCGA 20883 .......... .......... .......... .......... .......... .......... 467 CGATGTTTAT CTCAAGCTTC TCGTCAAGGT ATTTTATTTC ACTATTGTCT TTATAGATTT 20823 .......... .......... .......... .......... .......... .......... 467 AGTGCATTTT TGGTTACTAT ACTGAGAATT GGATGTTTAA TTGTGTGAAT AATAGTTGTA 20763 .......... .......... .......... .......... .......... .......... 467 CCGATTTCTA TCACGGAGGA CTGGTAGTAA GTTCAATGCT GTGATACTGA AGAGACTCTT 20703 .......... .......... .......... .......... .......... .......... 467 CATGAGCAAG ATCAATAAAG CTCCATTGTC TCTATCACGT TTGGTTACTT ACATGACTGG 20643 .......... .......... .......... .......... .......... .......... 467 AAAGGTATTT TATTCATTCA TTTTAGCTTT GTTTCACCTT ACACTGTTTG GATAGTTTCA 20583 .......... .......... .......... .......... .......... .......... 467 TAATGTTGTA TTGATTGTAT CATTTTATGT CGTTGTGTAA TATTATGATC AATAATTTGA 20523 .......... .......... .......... .......... .......... .......... 467 ATTATAAACT TACAAGTAAA TAGCATACAG TGTAGAGCTA GACCTATCTA ATGTGCCTTT 20463 .......... .......... .......... .......... .......... .......... 467 ATTTAGTGTT ACCATACAAT AAAATTTGTA TAACAATCAA ACTAACAGTT AATTTATCCA 20403 .......... .......... .......... .......... .......... .......... 467 ACAACACAAT GAAATACAAT GTAACAACCA TCCAAACATG CCTGCTAGTG ATCTTTGATT 20343 .......... .......... .......... .......... .......... .......... 467 GGACACATCT ACAGCGAGCA GTTATCAAAA TATTCTTGCT TTATACTAGC ATCGTTAAAT 20283 .......... .......... .......... .......... .......... .......... 467 TGTTAATGGT ATTAACGACG TCCTGAGTAG CATTTATGTG AATGAAATTG CTAAAAAGTA 20223 .......... .......... .......... .......... .......... .......... 467 GTAATATGCA GCGATTAGGA CTAAAGGAGT GAGGAATTCA CATATCAGAG TGTACAATAT 20163 .......... .......... .......... .......... .......... .......... 467 AGCTTAACAC TTGGGGGCCA TTTATATGCC GGACAGGAAT ATAGATAGTC TTGTGATAGA 20103 .......... .......... .......... .......... .......... .......... 467 AATTAACTAC TGCGTATTTC CTTTTTTGGT TACTTATCCT AGGATGACTT ATATTCGCTG 20043 .......... .......... .......... .......... .......... .......... 467 TGATAAGTTA TCCATTCTAG TGGATGGATT AATACAAGTA TCAGGATTAC TATGAAAATG 19983 .......... .......... .......... .......... .......... .......... 467 GAAAAAATAC TCCCAAGGTT GCTCAAAACA CTTTTTCTAT TGAAGAAGGT GGAGGGTTAT 19923 .......... .......... .......... .......... .......... .......... 467 CTTTGTATAC AACTTTTCCG AATGTCCCTT TTTTTATTTC TTATCCTACA TTGTATAAAG 19863 .......... .......... .......... .......... .......... .......... 467 TGATGCATAA TTTTGCATAT ACAGCAAAGT TATGTCCCAT GATTATTTAT GCAATGCATA 19803 .......... .......... .......... .......... .......... .......... 467 ATCTATTCCT CAACCATGCA GAGATTTATA TTAGAATTGA AATGTTAGAT CTGTAATCAG 19743 .......... .......... .......... .......... .......... .......... 467 AGTATGTTCC AGGATTGTTT GTTCTTGTAC AGCAAAGTAA ATAACCCTTG ATATTACTGA 19683 .......... .......... .......... .......... .......... .......... 467 AGTACTATAC AGTTTATCTG AATTGGCTTG TGTATGATGA TGATAGGAGG ACAATATTGC 19623 .......... .......... .......... .......... .......... .......... 467 TGTTGTTGTT GGGACTGTTA CCGATGATGT TCGAGCTTAT GAAGTCCCAA AAATCAAGGT 19563 .......... .......... .......... .......... .......... .......... 467 TACTGCATTG AGATTCACGG AAACAGCTAG AGCTAGGATT GAGAAGGCTG GAGGAGAATG 19503 .......... .......... .......... .......... .......... .......... 467 TTTGACCTTT GATCAGCTTG CTCTCAGAGC CCCTCTTGGG CAGAACACTG TACGGAACTT 19443 .......... .......... .......... .......... .......... .......... 467 CTCTCTCTCA TCAGTTTGCA TTTTTATGCC TTTTCTTTCA TCAATCAAGT GAATAATTAG 19383 .......... .......... .......... .......... .......... .......... 467 AGAATATGCT GTAGTGCTCT TCACTAGTAT ATAATAACAA ACCGAGGTGT TTTTAGAATT 19323 .......... .......... .......... .......... .......... .......... 467 GTGGTTTGAA TCTCGTCCTG CATAGGAAAT GATTATGTAT TCATGGTAGA GGTAACATTG 19263 .......... .......... .......... .......... .......... .......... 467 GCTAGTCATT TGTTTTGTAA TGCTTTCTTG ATCAGGTTTT GCTTAG 19217 |||| | || .......... .......... .......... .....ATTTT CCCAAG 478 hqPGS_C09HBa0278J12.1-_SGN-E394609+ (23099 22608) ******************************************************************************** EST sequence 191 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 25709 to 19313): Exon 1 23099 22608 ( 492 n); cDNA 2 466 ( 465 n); score: 0.733 MATCH C09HBa0278J12.1- SGN-E379618+ 0.733 492 0.863 C PGS_C09HBa0278J12.1-_SGN-E379618+ (23099 22608) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || | | |||| || | | TGTATTTCAC TGCAATTATA TAAT---T-- CACAATT-G- TATAATT--C GT-T-GGCCT 169 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | ||| | | ||| | | | ||| |||| ||||||||| | ||||||| ||| |||||| T---TTTCTC TGCAA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 224 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 284 GAAACACAAT TTATGCCCTT CTATTCTACA AAGCGAGAGA GTCGAGC-AG -AGGGAGAGA 22743 |||||| ||| |||| | ||| || | || | ||||||| | | ||||| || | |||||| GAAACAGAAT TTATACACTT CT-GTGTATA TAGCGAGATA GGCGAGCGAG AATGGAGAGT 343 AACGAGTGAG AATGTGAAAG AGGCGACTGA GAGTTTAGGG AGAGAGGCGA CTGACAAACG 22683 |||| ||| || | | ||| || || | | | | | | | | | |||| GGCGAGCGAG -ATTTTTGGG AGG-GA--GA -CGCCT---G ACA-A-AC-T TTAGCTAACG 392 TTTGCTATGA GCCACAATTA AATCAAACAG TAGCTACTCA ATTTATTTTA AATTATTAAT 22623 ||||||||| |||||||| |||||||| ||||||||| ||||| ||| |||| || | TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC ATTTA-GTTA GATTACTAGT 451 TTGCTATTTT TTACA 22608 |||||||| | |||| TTGCTATTAT ATACA 466 hqPGS_C09HBa0278J12.1-_SGN-E379618+ (23099 22608) ******************************************************************************** EST sequence 315 +strand 530 n (File: SGN-E393065+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGCATAAT TCCTTGGCCT TTTTCACTGC 181 CATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTCACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATATAAAC ATAATCTATA 301 CACTTCTGTG TATATAACGA GATATGCCAG CGATAATGGA AAATGGCCAG CGAGATTTTT 361 GGGAGGCAGA CGCCTGACCA ACTTTAGCTA ACGTTTGCCA TGAAGCACAA TAAGATCTAA 421 CTCTATCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TGTCCCATAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA Predicted gene structure (within gDNA segment 25719 to 19723): Exon 1 23099 22608 ( 492 n); cDNA 3 467 ( 465 n); score: 0.694 MATCH C09HBa0278J12.1- SGN-E393065+ 0.694 492 0.928 C PGS_C09HBa0278J12.1-_SGN-E393065+ (23099 22608) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATA-AGC GCATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||| ||||| GCTTTATACT AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGACAAAAT 121 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || || |||| | | ||| TGTATTTCAC TGCAATTATA TAAT---TC- AC-AATT-GC -ATAATTCCT -T-GGCCTTT 172 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | || || | | | | | ||| |||| ||||||||| | ||||||| ||| |||||| TTCA-CTG-- --CCA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 225 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTC ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 285 GAAACACAAT TTATGCCCTT CTATTCTACA AAGCGAGAGA GTCGAGC-A- GAGGGAGAGA 22743 ||||| ||| ||| | ||| || | || | | ||||| | | ||| | | ||| | TAAACATAAT CTATACACTT CT-GTGTATA TAACGAGATA TGCCAGCGAT AATGGAAAAT 344 AACGAGTGAG AATGTGAAAG AGGCGACTGA GAGTTTAGGG AGAGAGGCGA CTGACAAACG 22683 | || ||| || | | |||| | || | | | | | | | | |||| GGCCAGCGAG -ATTTTTGGG AGGC-A--GA -CGCCT---G A-CCA-AC-T TTAGCTAACG 393 TTTGCTATGA GCCACAATTA AATCAAACAG TAGCTACTCA ATTTATTTTA AATTATTAAT 22623 ||||| |||| |||||| | ||| ||| || |||||| ||||| ||| |||| || | TTTGCCATGA AGCACAATAA GATCTAACTC TATCTACTCC ATTTA-GTTA GATTACTAGT 452 TTGCTATTTT TTACA 22608 |||||||| | |||| TTGCTATTAT ATACA 467 hqPGS_C09HBa0278J12.1-_SGN-E393065+ (23099 22608) ******************************************************************************** EST sequence 73 -strand 605 n (File: SGN-E392605-) 1 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 61 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 121 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 181 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 241 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 301 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 361 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 421 GGGTGTAATA ATAGAATAAG AAAAGGGGCT TGAAATTCAG CTATAAACAA CCAGGGCATA 481 GGTAACGTGT ATACTTGATG TTATAGGTGA AATTTCAGCT TCTCAATTTC GATTAATTAA 541 CATTATAGAT ATATATATAT ATTCCCACAG TATCACATTT GATAGGAAAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 23929 to 17183): Exon 1 22898 22608 ( 291 n); cDNA 8 287 ( 280 n); score: 0.770 Intron 1 22607 19228 (3380 n); Pd: 0.900 (s: 0.80), Pa: 0.995 (s: 0) Exon 2 19227 19217 ( 11 n); cDNA 288 298 ( 11 n); score: 0.636 PPA cDNA 587 605 MATCH C09HBa0278J12.1- SGN-E392605- 0.770 302 0.499 C PGS_C09HBa0278J12.1-_SGN-E392605- (22898 22608,19227 19217) Alignment (genomic DNA sequence = upper lines): GAAATAAAAT GTTTGTATAT CGTATAATTA ATTGTATAGC ACGAAGATAT ATATTTTTGC 22839 ||| |||||| ||||||| | ||||||||| | |||||| | |||||||||| |||||||| | GAAGTAAAAT GTTTGTAATT TGTATAATTA AGTGTATAAC ACGAAGATAT ATATTTTTAC 67 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACACAATTT ATGCCCTTCT 22779 |||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| || | ||||| ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAATAGA AACAGAATTT ATACACTTCT 127 ATTCTACAAA GCGAGAGAGT CGAGC-AG-A GGGAGAGAAA CGAGTGAGAA TGTGAAAGAG 22721 | || | | |||||| || ||||| || | |||||| |||| ||| | | | ||| -GTGTATATA GCGAGATAGG CGAGCGAGAA TGGAGAGTGG CGAGCGAG-A TTTTTGGGAG 185 GCGACTGAGA GTTTAGGGAG AGAGGCGACT GACAAACGTT TGCTATGAGC CACAATTAAA 22661 | || || | | || | | | | | |||||| ||||||| |||||||||| G-GA--GA-C GCCT---GAC A-A-AC-TTT AGCTAACGTT TGCTATGGAG CACAATTAAA 235 TCAAACAGTA GCTACTCAAT TTATTTTAAA TTATTAATTT GCTATTTTTT ACAATATCCT 22601 |||||| || ||||||| || ||| ||| | ||| || ||| |||||| | | ||| TCAAACTCTA GCTACTCCAT TTA-GTTAGA TTACTAGTTT GCTATTATAT ACA....... 287 ATATATATAT ATATATCAAA AAGGGGTAAT TTATCAAAAA TCGTAACAAG ACAAGTTTTG 22541 .......... .......... .......... .......... .......... .......... 287 CTCATTAGAG TTTATGATTA AATTTAGCTA GCGTTTGGCC ATAGATATTC AAATATTTTT 22481 .......... .......... .......... .......... .......... .......... 287 GGCAAATATT ATTTGGATGA AAATTTGGGT GAAATTTTAC CATGTGTTTG GCCATAGAAT 22421 .......... .......... .......... .......... .......... .......... 287 TTGAGAAACA TATTTCATTT TTTTAAGAAA TATGATTTAT ACACATAAGT TTTTAAAACT 22361 .......... .......... .......... .......... .......... .......... 287 ATCAAGCTAA CCATAAATTT GTATTACATA GCACAATAGA AATCTCACGT AACAAGATTT 22301 .......... .......... .......... .......... .......... .......... 287 ATGACTTCCG CAACAAATCA ACAAGAATCA TTACAGTAAA TATTCGTATA GTGAAAAGGT 22241 .......... .......... .......... .......... .......... .......... 287 CTTGGTACAA ATCATGATAA TGAAAATACA ACTAATATAA ATTCGGGGAA AAAAAAAGAG 22181 .......... .......... .......... .......... .......... .......... 287 AAGAAAACAA AAGGAAATAA ATATTGCAAT CACGGAAGAA CCTATGCTTT CTCATCTGAA 22121 .......... .......... .......... .......... .......... .......... 287 AGAGTTCAAC CTATTCTTTA ATATAATCTT CCCACATTTT ATGAACAATC TCTTCTCGAT 22061 .......... .......... .......... .......... .......... .......... 287 GAGCTTGCAT TTTCGAATCA GACGATCGAG AAGATGAAGC AATGTTGTTA CCCTAAGCCA 22001 .......... .......... .......... .......... .......... .......... 287 GTAGTTCGTC ACTTTCATTA ACAACCATAT CATCATTTTC ATATTCATTG AATATTCCAT 21941 .......... .......... .......... .......... .......... .......... 287 CACTACTTTG GTGTTCACGT AAAAAATTAT GCAATACAGC GCAAGCAATT ACTATTTTCA 21881 .......... .......... .......... .......... .......... .......... 287 CTTGCATGTC ACATTCATAG TTGTTCATGC ATTGTCTTAG TATTCTGAAT CTACTTTTCC 21821 .......... .......... .......... .......... .......... .......... 287 ACGCACCAAA AGTTCATTCA ATTACATTGC GTAGAGAAGC ATGTCTATAG TTAAATAGCT 21761 .......... .......... .......... .......... .......... .......... 287 CTTTTTCATT CTTAGGCTCT CTTTCACTTC CTCGGTAGTC CTGCAAATGA TAGCGCATAC 21701 .......... .......... .......... .......... .......... .......... 287 CAATGAATGG AGCTAAAAAT CTCTTGTGTT CCGTAGACCA GCATCAACAA CGTAATATTT 21641 .......... .......... .......... .......... .......... .......... 287 ATCTACCAAA ATAAAATTAA TGCAATTCAT GTTTTATTTA GTAGCTAGTT CATTAAGACT 21581 .......... .......... .......... .......... .......... .......... 287 AACTGTAACA AATGAATGTA TGAAATCAAA AGAATGCATG TAGAAGGGAG CTAATTGAAT 21521 .......... .......... .......... .......... .......... .......... 287 TGGTTGGTGT CAATAAATAT TTTTTTTTTA TAAAATAAAA AGTTAAGGGT AAAAATTGAA 21461 .......... .......... .......... .......... .......... .......... 287 TTTCTAAAAC TTTCCAAATA ACGAAATTCG GCCCAAATAC TAGTTTTTTC TAGTATTTGG 21401 .......... .......... .......... .......... .......... .......... 287 GAATTTGAAA AATTTGCCAA AAAAATTTGC CAAATAATAA AAAAGTGTAT GGACAAACAA 21341 .......... .......... .......... .......... .......... .......... 287 AATTTTGTCA AGTTTTTCCC CAAATTTTAC TTGCAAAATT TATGGGCAAA CGGGCCCTTA 21281 .......... .......... .......... .......... .......... .......... 287 AACTTTTTTT TAAACGGAAC AAAAATTAAA TAATCGTACT AAAAAAGTTC TTATTTGTGG 21221 .......... .......... .......... .......... .......... .......... 287 ATATCTCCTT CACACATAGT ATCTTGGGCC TATTGGGCTG TCACCAACCA AGCCCATTAA 21161 .......... .......... .......... .......... .......... .......... 287 AAATCTGTAT TAGGGTTTTT TTCAAAAAGG GTTAAAAAGA ATCTTCATCA TATTTTTCCA 21101 .......... .......... .......... .......... .......... .......... 287 TTCTCCGAAC AGAAAAACCT ATCAGCAGCA GGCGGCGGCG GAGGAAAGTA GAAGCAGCAG 21041 .......... .......... .......... .......... .......... .......... 287 GCGGAGCATC ATGGTGAATA TTTTTTTTTA GAATATTCCT GCATTTGTTT TCACGGACGC 20981 .......... .......... .......... .......... .......... .......... 287 CATAGCTTGA TTTTGTTATT TTGATTTTCT ATTTAGGGTA TCGATCTAGT TGCCGGAGGT 20921 .......... .......... .......... .......... .......... .......... 287 AAGTCCAAAA AGACTAAGCG CATTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 20861 .......... .......... .......... .......... .......... .......... 287 GTCAAGGTAT TTTATTTCAC TATTGTCTTT ATAGATTTAG TGCATTTTTG GTTACTATAC 20801 .......... .......... .......... .......... .......... .......... 287 TGAGAATTGG ATGTTTAATT GTGTGAATAA TAGTTGTACC GATTTCTATC ACGGAGGACT 20741 .......... .......... .......... .......... .......... .......... 287 GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT CAATAAAGCT 20681 .......... .......... .......... .......... .......... .......... 287 CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AGGTATTTTA TTCATTCATT 20621 .......... .......... .......... .......... .......... .......... 287 TTAGCTTTGT TTCACCTTAC ACTGTTTGGA TAGTTTCATA ATGTTGTATT GATTGTATCA 20561 .......... .......... .......... .......... .......... .......... 287 TTTTATGTCG TTGTGTAATA TTATGATCAA TAATTTGAAT TATAAACTTA CAAGTAAATA 20501 .......... .......... .......... .......... .......... .......... 287 GCATACAGTG TAGAGCTAGA CCTATCTAAT GTGCCTTTAT TTAGTGTTAC CATACAATAA 20441 .......... .......... .......... .......... .......... .......... 287 AATTTGTATA ACAATCAAAC TAACAGTTAA TTTATCCAAC AACACAATGA AATACAATGT 20381 .......... .......... .......... .......... .......... .......... 287 AACAACCATC CAAACATGCC TGCTAGTGAT CTTTGATTGG ACACATCTAC AGCGAGCAGT 20321 .......... .......... .......... .......... .......... .......... 287 TATCAAAATA TTCTTGCTTT ATACTAGCAT CGTTAAATTG TTAATGGTAT TAACGACGTC 20261 .......... .......... .......... .......... .......... .......... 287 CTGAGTAGCA TTTATGTGAA TGAAATTGCT AAAAAGTAGT AATATGCAGC GATTAGGACT 20201 .......... .......... .......... .......... .......... .......... 287 AAAGGAGTGA GGAATTCACA TATCAGAGTG TACAATATAG CTTAACACTT GGGGGCCATT 20141 .......... .......... .......... .......... .......... .......... 287 TATATGCCGG ACAGGAATAT AGATAGTCTT GTGATAGAAA TTAACTACTG CGTATTTCCT 20081 .......... .......... .......... .......... .......... .......... 287 TTTTTGGTTA CTTATCCTAG GATGACTTAT ATTCGCTGTG ATAAGTTATC CATTCTAGTG 20021 .......... .......... .......... .......... .......... .......... 287 GATGGATTAA TACAAGTATC AGGATTACTA TGAAAATGGA AAAAATACTC CCAAGGTTGC 19961 .......... .......... .......... .......... .......... .......... 287 TCAAAACACT TTTTCTATTG AAGAAGGTGG AGGGTTATCT TTGTATACAA CTTTTCCGAA 19901 .......... .......... .......... .......... .......... .......... 287 TGTCCCTTTT TTTATTTCTT ATCCTACATT GTATAAAGTG ATGCATAATT TTGCATATAC 19841 .......... .......... .......... .......... .......... .......... 287 AGCAAAGTTA TGTCCCATGA TTATTTATGC AATGCATAAT CTATTCCTCA ACCATGCAGA 19781 .......... .......... .......... .......... .......... .......... 287 GATTTATATT AGAATTGAAA TGTTAGATCT GTAATCAGAG TATGTTCCAG GATTGTTTGT 19721 .......... .......... .......... .......... .......... .......... 287 TCTTGTACAG CAAAGTAAAT AACCCTTGAT ATTACTGAAG TACTATACAG TTTATCTGAA 19661 .......... .......... .......... .......... .......... .......... 287 TTGGCTTGTG TATGATGATG ATAGGAGGAC AATATTGCTG TTGTTGTTGG GACTGTTACC 19601 .......... .......... .......... .......... .......... .......... 287 GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 19541 .......... .......... .......... .......... .......... .......... 287 ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 19481 .......... .......... .......... .......... .......... .......... 287 CTCAGAGCCC CTCTTGGGCA GAACACTGTA CGGAACTTCT CTCTCTCATC AGTTTGCATT 19421 .......... .......... .......... .......... .......... .......... 287 TTTATGCCTT TTCTTTCATC AATCAAGTGA ATAATTAGAG AATATGCTGT AGTGCTCTTC 19361 .......... .......... .......... .......... .......... .......... 287 ACTAGTATAT AATAACAAAC CGAGGTGTTT TTAGAATTGT GGTTTGAATC TCGTCCTGCA 19301 .......... .......... .......... .......... .......... .......... 287 TAGGAAATGA TTATGTATTC ATGGTAGAGG TAACATTGGC TAGTCATTTG TTTTGTAATG 19241 .......... .......... .......... .......... .......... .......... 287 CTTTCTTGAT CAGGTTTTGC TTAG 19217 |||| | || .......... ...ATTTTCC CAAG 298 hqPGS_C09HBa0278J12.1-_SGN-E392605- (22898 22608) ******************************************************************************** EST sequence 114 -strand 651 n (File: SGN-E394141-) 1 CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 61 AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 121 ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 181 ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 241 CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 301 ATTTAGTTAG ATTACTAGTT TGCTATTATA TACAATTTTC CCAAGAGCTT GTATAAAATG 361 GAGAGAAGGA AAAAGATTTA GAATTATCGC TTGTGAATGA CAAGAAAAGA TTGCAAAATA 421 AGAATTTAGT TGTTTTGCTT TAATAAGTTC CTTAATCATT TCATTAGGGG TGTAATAATA 481 GAATAAGAAA AGGGGCTTGA AATTCAGCTA TAAACAACCA GGGCATAGGT AACGTGTATA 541 CTTGATGTTA TAGGTGAAAT TTCAGCTTCT CAATTTCGAT TAATTAACAT TAAAAAGATA 601 TATATATATT CCCCCAGTAT CACATTGATA GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 24399 to 17193): Exon 1 22898 22608 ( 291 n); cDNA 55 334 ( 280 n); score: 0.770 Intron 1 22607 19228 (3380 n); Pd: 0.900 (s: 0.80), Pa: 0.995 (s: 0) Exon 2 19227 19217 ( 11 n); cDNA 335 345 ( 11 n); score: 0.636 PPA cDNA 632 651 MATCH C09HBa0278J12.1- SGN-E394141- 0.770 302 0.464 C PGS_C09HBa0278J12.1-_SGN-E394141- (22898 22608,19227 19217) Alignment (genomic DNA sequence = upper lines): GAAATAAAAT GTTTGTATAT CGTATAATTA ATTGTATAGC ACGAAGATAT ATATTTTTGC 22839 ||| |||||| ||||||| | ||||||||| | |||||| | |||||||||| |||||||| | GAAGTAAAAT GTTTGTAATT TGTATAATTA AGTGTATAAC ACGAAGATAT ATATTTTTAC 114 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACACAATTT ATGCCCTTCT 22779 |||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| || | ||||| ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAATAGA AACAGAATTT ATACACTTCT 174 ATTCTACAAA GCGAGAGAGT CGAGC-AG-A GGGAGAGAAA CGAGTGAGAA TGTGAAAGAG 22721 | || | | |||||| || ||||| || | |||||| |||| ||| | | | ||| -GTGTATATA GCGAGATAGG CGAGCGAGAA TGGAGAGTGG CGAGCGAG-A TTTTTGGGAG 232 GCGACTGAGA GTTTAGGGAG AGAGGCGACT GACAAACGTT TGCTATGAGC CACAATTAAA 22661 | || || | | || | | | | | |||||| ||||||| |||||||||| G-GA--GA-C GCCT---GAC A-A-AC-TTT AGCTAACGTT TGCTATGGAG CACAATTAAA 282 TCAAACAGTA GCTACTCAAT TTATTTTAAA TTATTAATTT GCTATTTTTT ACAATATCCT 22601 |||||| || ||||||| || ||| ||| | ||| || ||| |||||| | | ||| TCAAACTCTA GCTACTCCAT TTA-GTTAGA TTACTAGTTT GCTATTATAT ACA....... 334 ATATATATAT ATATATCAAA AAGGGGTAAT TTATCAAAAA TCGTAACAAG ACAAGTTTTG 22541 .......... .......... .......... .......... .......... .......... 334 CTCATTAGAG TTTATGATTA AATTTAGCTA GCGTTTGGCC ATAGATATTC AAATATTTTT 22481 .......... .......... .......... .......... .......... .......... 334 GGCAAATATT ATTTGGATGA AAATTTGGGT GAAATTTTAC CATGTGTTTG GCCATAGAAT 22421 .......... .......... .......... .......... .......... .......... 334 TTGAGAAACA TATTTCATTT TTTTAAGAAA TATGATTTAT ACACATAAGT TTTTAAAACT 22361 .......... .......... .......... .......... .......... .......... 334 ATCAAGCTAA CCATAAATTT GTATTACATA GCACAATAGA AATCTCACGT AACAAGATTT 22301 .......... .......... .......... .......... .......... .......... 334 ATGACTTCCG CAACAAATCA ACAAGAATCA TTACAGTAAA TATTCGTATA GTGAAAAGGT 22241 .......... .......... .......... .......... .......... .......... 334 CTTGGTACAA ATCATGATAA TGAAAATACA ACTAATATAA ATTCGGGGAA AAAAAAAGAG 22181 .......... .......... .......... .......... .......... .......... 334 AAGAAAACAA AAGGAAATAA ATATTGCAAT CACGGAAGAA CCTATGCTTT CTCATCTGAA 22121 .......... .......... .......... .......... .......... .......... 334 AGAGTTCAAC CTATTCTTTA ATATAATCTT CCCACATTTT ATGAACAATC TCTTCTCGAT 22061 .......... .......... .......... .......... .......... .......... 334 GAGCTTGCAT TTTCGAATCA GACGATCGAG AAGATGAAGC AATGTTGTTA CCCTAAGCCA 22001 .......... .......... .......... .......... .......... .......... 334 GTAGTTCGTC ACTTTCATTA ACAACCATAT CATCATTTTC ATATTCATTG AATATTCCAT 21941 .......... .......... .......... .......... .......... .......... 334 CACTACTTTG GTGTTCACGT AAAAAATTAT GCAATACAGC GCAAGCAATT ACTATTTTCA 21881 .......... .......... .......... .......... .......... .......... 334 CTTGCATGTC ACATTCATAG TTGTTCATGC ATTGTCTTAG TATTCTGAAT CTACTTTTCC 21821 .......... .......... .......... .......... .......... .......... 334 ACGCACCAAA AGTTCATTCA ATTACATTGC GTAGAGAAGC ATGTCTATAG TTAAATAGCT 21761 .......... .......... .......... .......... .......... .......... 334 CTTTTTCATT CTTAGGCTCT CTTTCACTTC CTCGGTAGTC CTGCAAATGA TAGCGCATAC 21701 .......... .......... .......... .......... .......... .......... 334 CAATGAATGG AGCTAAAAAT CTCTTGTGTT CCGTAGACCA GCATCAACAA CGTAATATTT 21641 .......... .......... .......... .......... .......... .......... 334 ATCTACCAAA ATAAAATTAA TGCAATTCAT GTTTTATTTA GTAGCTAGTT CATTAAGACT 21581 .......... .......... .......... .......... .......... .......... 334 AACTGTAACA AATGAATGTA TGAAATCAAA AGAATGCATG TAGAAGGGAG CTAATTGAAT 21521 .......... .......... .......... .......... .......... .......... 334 TGGTTGGTGT CAATAAATAT TTTTTTTTTA TAAAATAAAA AGTTAAGGGT AAAAATTGAA 21461 .......... .......... .......... .......... .......... .......... 334 TTTCTAAAAC TTTCCAAATA ACGAAATTCG GCCCAAATAC TAGTTTTTTC TAGTATTTGG 21401 .......... .......... .......... .......... .......... .......... 334 GAATTTGAAA AATTTGCCAA AAAAATTTGC CAAATAATAA AAAAGTGTAT GGACAAACAA 21341 .......... .......... .......... .......... .......... .......... 334 AATTTTGTCA AGTTTTTCCC CAAATTTTAC TTGCAAAATT TATGGGCAAA CGGGCCCTTA 21281 .......... .......... .......... .......... .......... .......... 334 AACTTTTTTT TAAACGGAAC AAAAATTAAA TAATCGTACT AAAAAAGTTC TTATTTGTGG 21221 .......... .......... .......... .......... .......... .......... 334 ATATCTCCTT CACACATAGT ATCTTGGGCC TATTGGGCTG TCACCAACCA AGCCCATTAA 21161 .......... .......... .......... .......... .......... .......... 334 AAATCTGTAT TAGGGTTTTT TTCAAAAAGG GTTAAAAAGA ATCTTCATCA TATTTTTCCA 21101 .......... .......... .......... .......... .......... .......... 334 TTCTCCGAAC AGAAAAACCT ATCAGCAGCA GGCGGCGGCG GAGGAAAGTA GAAGCAGCAG 21041 .......... .......... .......... .......... .......... .......... 334 GCGGAGCATC ATGGTGAATA TTTTTTTTTA GAATATTCCT GCATTTGTTT TCACGGACGC 20981 .......... .......... .......... .......... .......... .......... 334 CATAGCTTGA TTTTGTTATT TTGATTTTCT ATTTAGGGTA TCGATCTAGT TGCCGGAGGT 20921 .......... .......... .......... .......... .......... .......... 334 AAGTCCAAAA AGACTAAGCG CATTGCACCA AAATCCGACG ATGTTTATCT CAAGCTTCTC 20861 .......... .......... .......... .......... .......... .......... 334 GTCAAGGTAT TTTATTTCAC TATTGTCTTT ATAGATTTAG TGCATTTTTG GTTACTATAC 20801 .......... .......... .......... .......... .......... .......... 334 TGAGAATTGG ATGTTTAATT GTGTGAATAA TAGTTGTACC GATTTCTATC ACGGAGGACT 20741 .......... .......... .......... .......... .......... .......... 334 GGTAGTAAGT TCAATGCTGT GATACTGAAG AGACTCTTCA TGAGCAAGAT CAATAAAGCT 20681 .......... .......... .......... .......... .......... .......... 334 CCATTGTCTC TATCACGTTT GGTTACTTAC ATGACTGGAA AGGTATTTTA TTCATTCATT 20621 .......... .......... .......... .......... .......... .......... 334 TTAGCTTTGT TTCACCTTAC ACTGTTTGGA TAGTTTCATA ATGTTGTATT GATTGTATCA 20561 .......... .......... .......... .......... .......... .......... 334 TTTTATGTCG TTGTGTAATA TTATGATCAA TAATTTGAAT TATAAACTTA CAAGTAAATA 20501 .......... .......... .......... .......... .......... .......... 334 GCATACAGTG TAGAGCTAGA CCTATCTAAT GTGCCTTTAT TTAGTGTTAC CATACAATAA 20441 .......... .......... .......... .......... .......... .......... 334 AATTTGTATA ACAATCAAAC TAACAGTTAA TTTATCCAAC AACACAATGA AATACAATGT 20381 .......... .......... .......... .......... .......... .......... 334 AACAACCATC CAAACATGCC TGCTAGTGAT CTTTGATTGG ACACATCTAC AGCGAGCAGT 20321 .......... .......... .......... .......... .......... .......... 334 TATCAAAATA TTCTTGCTTT ATACTAGCAT CGTTAAATTG TTAATGGTAT TAACGACGTC 20261 .......... .......... .......... .......... .......... .......... 334 CTGAGTAGCA TTTATGTGAA TGAAATTGCT AAAAAGTAGT AATATGCAGC GATTAGGACT 20201 .......... .......... .......... .......... .......... .......... 334 AAAGGAGTGA GGAATTCACA TATCAGAGTG TACAATATAG CTTAACACTT GGGGGCCATT 20141 .......... .......... .......... .......... .......... .......... 334 TATATGCCGG ACAGGAATAT AGATAGTCTT GTGATAGAAA TTAACTACTG CGTATTTCCT 20081 .......... .......... .......... .......... .......... .......... 334 TTTTTGGTTA CTTATCCTAG GATGACTTAT ATTCGCTGTG ATAAGTTATC CATTCTAGTG 20021 .......... .......... .......... .......... .......... .......... 334 GATGGATTAA TACAAGTATC AGGATTACTA TGAAAATGGA AAAAATACTC CCAAGGTTGC 19961 .......... .......... .......... .......... .......... .......... 334 TCAAAACACT TTTTCTATTG AAGAAGGTGG AGGGTTATCT TTGTATACAA CTTTTCCGAA 19901 .......... .......... .......... .......... .......... .......... 334 TGTCCCTTTT TTTATTTCTT ATCCTACATT GTATAAAGTG ATGCATAATT TTGCATATAC 19841 .......... .......... .......... .......... .......... .......... 334 AGCAAAGTTA TGTCCCATGA TTATTTATGC AATGCATAAT CTATTCCTCA ACCATGCAGA 19781 .......... .......... .......... .......... .......... .......... 334 GATTTATATT AGAATTGAAA TGTTAGATCT GTAATCAGAG TATGTTCCAG GATTGTTTGT 19721 .......... .......... .......... .......... .......... .......... 334 TCTTGTACAG CAAAGTAAAT AACCCTTGAT ATTACTGAAG TACTATACAG TTTATCTGAA 19661 .......... .......... .......... .......... .......... .......... 334 TTGGCTTGTG TATGATGATG ATAGGAGGAC AATATTGCTG TTGTTGTTGG GACTGTTACC 19601 .......... .......... .......... .......... .......... .......... 334 GATGATGTTC GAGCTTATGA AGTCCCAAAA ATCAAGGTTA CTGCATTGAG ATTCACGGAA 19541 .......... .......... .......... .......... .......... .......... 334 ACAGCTAGAG CTAGGATTGA GAAGGCTGGA GGAGAATGTT TGACCTTTGA TCAGCTTGCT 19481 .......... .......... .......... .......... .......... .......... 334 CTCAGAGCCC CTCTTGGGCA GAACACTGTA CGGAACTTCT CTCTCTCATC AGTTTGCATT 19421 .......... .......... .......... .......... .......... .......... 334 TTTATGCCTT TTCTTTCATC AATCAAGTGA ATAATTAGAG AATATGCTGT AGTGCTCTTC 19361 .......... .......... .......... .......... .......... .......... 334 ACTAGTATAT AATAACAAAC CGAGGTGTTT TTAGAATTGT GGTTTGAATC TCGTCCTGCA 19301 .......... .......... .......... .......... .......... .......... 334 TAGGAAATGA TTATGTATTC ATGGTAGAGG TAACATTGGC TAGTCATTTG TTTTGTAATG 19241 .......... .......... .......... .......... .......... .......... 334 CTTTCTTGAT CAGGTTTTGC TTAG 19217 |||| | || .......... ...ATTTTCC CAAG 345 hqPGS_C09HBa0278J12.1-_SGN-E394141- (22898 22608) ******************************************************************************** EST sequence 446 +strand 450 n (File: SGN-E200845+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG Predicted gene structure (within gDNA segment 25709 to 20513): Exon 1 23099 22732 ( 368 n); cDNA 2 354 ( 353 n); score: 0.749 MATCH C09HBa0278J12.1- SGN-E200845+ 0.749 368 0.818 C PGS_C09HBa0278J12.1-_SGN-E200845+ (23099 22732) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || | | |||| || | | TGTATTTCAC TGCAATTATA TAAT---T-- CACAATT-G- TATAATT--C GT-T-GGCCT 169 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | ||| | | ||| | | | ||| |||| ||||||||| | ||||||| ||| |||||| T---TTTCTC TGCAA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 224 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 284 GAAACACAAT TTATGCCCTT CTATTCTACA AAGCGAGAGA GTCGAGC-AG -AGGGAGAGA 22743 |||||| ||| |||| | ||| || | || | ||||||| | | ||||| || | |||||| GAAACAGAAT TTATACACTT CT-GTGTATA TAGCGAGATA GGCGAGCGAG AATGGAGAGT 343 AACGAGTGAG A 22732 |||| ||| | GGCGAGCGAG A 354 hqPGS_C09HBa0278J12.1-_SGN-E200845+ (23099 22732) ******************************************************************************** EST sequence 320 +strand 325 n (File: SGN-E393076+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 301 TTTTTTTGTG TATATAGCGA GATAG Predicted gene structure (within gDNA segment 25719 to 21773): Exon 1 23099 22760 ( 340 n); cDNA 3 325 ( 323 n); score: 0.749 MATCH C09HBa0278J12.1- SGN-E393076+ 0.749 340 1.046 C PGS_C09HBa0278J12.1-_SGN-E393076+ (23099 22760) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || | | |||| || | | TGTATTTCAC TGCAATTATA TAAT---T-- CACAATT-G- TATAATT--C GT-T-GGCCT 170 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | ||| | | ||| | | | ||| |||| ||||||||| | ||||||| ||| |||||| T---TTTCTC TGCAA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 225 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 285 GAAACACAAT TTATGCCCTT CTATTCTACA AAGCGAGAGA G 22760 ||||| ||| |||| || | | || | ||||||| | | AAAACAGAAT TTAT-TTTTT TTTGTGTATA TAGCGAGATA G 325 hqPGS_C09HBa0278J12.1-_SGN-E393076+ (23099 22760) ******************************************************************************** EST sequence 318 +strand 308 n (File: SGN-E393075+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 301 TTTTTTTT Predicted gene structure (within gDNA segment 25719 to 21943): Exon 1 23099 22795 ( 305 n); cDNA 3 291 ( 289 n); score: 0.762 MATCH C09HBa0278J12.1- SGN-E393075+ 0.762 305 0.990 C PGS_C09HBa0278J12.1-_SGN-E393075+ (23099 22795) Alignment (genomic DNA sequence = upper lines): AATTATAAGT GTATACGAAG AAGATATATG TTTTTGCATT TCTATATACA ATTTTCTCTC 23040 || | || || ||| | | ||| || | | ||| |||||| |||| |||| AAATGTATGT ATATTGCATA ATTATAAGTG -TATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATAC- AAAACAAAAA CACAATTTAT ACACTTTTGT TGTATAAAGC GAGAGAAAAT 22981 ||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTTGC TGCAATTGTA TAATCGCTGG CCTATTTCGC TGAAATTATT GTATAAATTT 22921 ||||||| | ||||||| || |||| | | | || | | |||| || | | TGTATTTCAC TGCAATTATA TAAT---T-- CACAATT-G- TATAATT--C GT-T-GGCCT 170 TGCATTTGTA TACAATTGAA TCGAAATAAA ATGTTTGTAT ATCGTATAAT TAATTGTATA 22861 | ||| | | ||| | | | ||| |||| ||||||||| | ||||||| ||| |||||| T---TTTCTC TGCAA-T-AT TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA 225 GCACGAAGAT ATATATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAACA 22801 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA 285 GAAACA 22795 |||||| GAAACA 291 hqPGS_C09HBa0278J12.1-_SGN-E393075+ (23099 22795) ******************************************************************************** EST sequence 38 +strand 386 n (File: SGN-E278802+) 1 TCCAGTTACA GACGTCAAAT ATTATGCCTG CATTTCCTTA TGTTGCACCG TTTTCGTGTA 61 CGGTGCCTGA TTGCTGTAGA ATAGTGCGGT CCTTTATCGA GGATTCAGTT AGTTTTATGT 121 CACATGGTGG TCAGCTTGAT TTCTATGATG TGGTGAAGAA GTACTTGGAT CGGCTTTTAA 181 CTGAAGTCCT GGATGGAGCC CTGTTGAAGC TCATTCATAC GTCTATCGGT GGTGTTACCC 241 AAGCAATGCA GATGGCAGCT AACATGGCTG TGTTTGAACG CGCTTGTGAT TTTTTCTTTC 301 GTCATGCTGC ACAGCTTTCA GGGATTCCAT TGAGAATGGC AGAGAGGGGG AGGAGACTGT 361 TCCCTTTGAC TAAAGCCCGC GATGCT Predicted gene structure (within gDNA segment 24845 to 26440): Exon 1 25445 25830 ( 386 n); cDNA 1 386 ( 386 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E278802+ 1.000 386 1.000 C PGS_C09HBa0278J12.1+_SGN-E278802+ (25445 25830) Alignment (genomic DNA sequence = upper lines): TCCAGTTACA GACGTCAAAT ATTATGCCTG CATTTCCTTA TGTTGCACCG TTTTCGTGTA 25504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTTACA GACGTCAAAT ATTATGCCTG CATTTCCTTA TGTTGCACCG TTTTCGTGTA 60 CGGTGCCTGA TTGCTGTAGA ATAGTGCGGT CCTTTATCGA GGATTCAGTT AGTTTTATGT 25564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGCCTGA TTGCTGTAGA ATAGTGCGGT CCTTTATCGA GGATTCAGTT AGTTTTATGT 120 CACATGGTGG TCAGCTTGAT TTCTATGATG TGGTGAAGAA GTACTTGGAT CGGCTTTTAA 25624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATGGTGG TCAGCTTGAT TTCTATGATG TGGTGAAGAA GTACTTGGAT CGGCTTTTAA 180 CTGAAGTCCT GGATGGAGCC CTGTTGAAGC TCATTCATAC GTCTATCGGT GGTGTTACCC 25684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGTCCT GGATGGAGCC CTGTTGAAGC TCATTCATAC GTCTATCGGT GGTGTTACCC 240 AAGCAATGCA GATGGCAGCT AACATGGCTG TGTTTGAACG CGCTTGTGAT TTTTTCTTTC 25744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGCA GATGGCAGCT AACATGGCTG TGTTTGAACG CGCTTGTGAT TTTTTCTTTC 300 GTCATGCTGC ACAGCTTTCA GGGATTCCAT TGAGAATGGC AGAGAGGGGG AGGAGACTGT 25804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGCTGC ACAGCTTTCA GGGATTCCAT TGAGAATGGC AGAGAGGGGG AGGAGACTGT 360 TCCCTTTGAC TAAAGCCCGC GATGCT 25830 |||||||||| |||||||||| |||||| TCCCTTTGAC TAAAGCCCGC GATGCT 386 hqPGS_C09HBa0278J12.1+_SGN-E278802+ (25445 25830) ******************************************************************************** EST sequence 58 +strand 451 n (File: SGN-E205095+) 1 AGAATAGTGC GGTCCTTTAT CGAGGATTCA GTTAGTTTTA TGTCACATGG TGGTCAGCTT 61 GATTTCTATG ATGTGGTGAA GAAGTACTTG GATCGGCTTT TAACTGAAGT CCTGGATGGA 121 GCCCTGTTGA AGCTCATTCA TACGTCTATC GGTGGTGTTA CCCAAGCAAT GCAGATGGCA 181 GCTAACATGG CTGTGTTTGA ACGCGCTTGT GATTTTTTCT TTCGTCATGC TGCACAGCTT 241 TCAGGGATTC CATTGAGAAT GGCAGAGAGG GGGAGGAGAC TGTTCCCTTT GACTAAAGCC 301 CGCGATGCTG CTGAAGAGAT GCTTTCAGGT CTGCTTAAGC AAAAGGTTGA TGGGTTCCTT 361 TTGTTGATTG AGAATGTGAA TTGGATGGCC GATGATCCTC TACAGAGTGG AAATGAATAT 421 GTGCATGAGG TGATTATTTT TCTTGAAACA C Predicted gene structure (within gDNA segment 24922 to 26582): Exon 1 25522 25972 ( 451 n); cDNA 1 451 ( 451 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E205095+ 1.000 451 1.000 C PGS_C09HBa0278J12.1+_SGN-E205095+ (25522 25972) Alignment (genomic DNA sequence = upper lines): AGAATAGTGC GGTCCTTTAT CGAGGATTCA GTTAGTTTTA TGTCACATGG TGGTCAGCTT 25581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATAGTGC GGTCCTTTAT CGAGGATTCA GTTAGTTTTA TGTCACATGG TGGTCAGCTT 60 GATTTCTATG ATGTGGTGAA GAAGTACTTG GATCGGCTTT TAACTGAAGT CCTGGATGGA 25641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTCTATG ATGTGGTGAA GAAGTACTTG GATCGGCTTT TAACTGAAGT CCTGGATGGA 120 GCCCTGTTGA AGCTCATTCA TACGTCTATC GGTGGTGTTA CCCAAGCAAT GCAGATGGCA 25701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCTGTTGA AGCTCATTCA TACGTCTATC GGTGGTGTTA CCCAAGCAAT GCAGATGGCA 180 GCTAACATGG CTGTGTTTGA ACGCGCTTGT GATTTTTTCT TTCGTCATGC TGCACAGCTT 25761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAACATGG CTGTGTTTGA ACGCGCTTGT GATTTTTTCT TTCGTCATGC TGCACAGCTT 240 TCAGGGATTC CATTGAGAAT GGCAGAGAGG GGGAGGAGAC TGTTCCCTTT GACTAAAGCC 25821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGGATTC CATTGAGAAT GGCAGAGAGG GGGAGGAGAC TGTTCCCTTT GACTAAAGCC 300 CGCGATGCTG CTGAAGAGAT GCTTTCAGGT CTGCTTAAGC AAAAGGTTGA TGGGTTCCTT 25881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGATGCTG CTGAAGAGAT GCTTTCAGGT CTGCTTAAGC AAAAGGTTGA TGGGTTCCTT 360 TTGTTGATTG AGAATGTGAA TTGGATGGCC GATGATCCTC TACAGAGTGG AAATGAATAT 25941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGATTG AGAATGTGAA TTGGATGGCC GATGATCCTC TACAGAGTGG AAATGAATAT 420 GTGCATGAGG TGATTATTTT TCTTGAAACA C 25972 |||||||||| |||||||||| |||||||||| | GTGCATGAGG TGATTATTTT TCTTGAAACA C 451 hqPGS_C09HBa0278J12.1+_SGN-E205095+ (25522 25972) ******************************************************************************** EST sequence 50 +strand 610 n (File: SGN-E372915+) 1 AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 61 AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 121 TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 181 AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTACTGCC CAGCAAATAT 241 TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 301 TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 361 TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATCTG 421 AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 481 TCTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 541 CTTTGGACTA CCGCACAGTT GTTACTATCT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 601 TTTTTGGGTC Predicted gene structure (within gDNA segment 25157 to 26976): Exon 1 25757 26366 ( 610 n); cDNA 1 610 ( 610 n); score: 0.998 MATCH C09HBa0278J12.1+ SGN-E372915+ 0.998 610 1.000 C PGS_C09HBa0278J12.1+_SGN-E372915+ (25757 26366) Alignment (genomic DNA sequence = upper lines): AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 25816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 60 AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 25876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 120 TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 25936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 180 AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTACTGCC CAGCAAATAT 25996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTACTGCC CAGCAAATAT 240 TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 26056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 300 TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 26116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 360 TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATCTG 26176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATCTG 420 AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 26236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 480 TCTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 26296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 540 CTTTGGACTA CCGCAAAGTT GTTACTATCT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 26356 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGACTA CCGCACAGTT GTTACTATCT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 600 TTTTTGGGTC 26366 |||||||||| TTTTTGGGTC 610 hqPGS_C09HBa0278J12.1+_SGN-E372915+ (25757 26366) ******************************************************************************** EST sequence 137 +strand 225 n (File: SGN-E292818+) 1 AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 61 AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 121 TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 181 AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTA Predicted gene structure (within gDNA segment 25157 to 26591): Exon 1 25757 25981 ( 225 n); cDNA 1 225 ( 225 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E292818+ 1.000 225 1.000 C PGS_C09HBa0278J12.1+_SGN-E292818+ (25757 25981) Alignment (genomic DNA sequence = upper lines): AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 25816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCAGG GATTCCATTG AGAATGGCAG AGAGGGGGAG GAGACTGTTC CCTTTGACTA 60 AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 25876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCGCGA TGCTGCTGAA GAGATGCTTT CAGGTCTGCT TAAGCAAAAG GTTGATGGGT 120 TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 25936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTGTT GATTGAGAAT GTGAATTGGA TGGCCGATGA TCCTCTACAG AGTGGAAATG 180 AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTA 25981 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AATATGTGCA TGAGGTGATT ATTTTTCTTG AAACACTAAC TTCTA 225 hqPGS_C09HBa0278J12.1+_SGN-E292818+ (25757 25981) ******************************************************************************** EST sequence 246 -strand 669 n (File: SGN-E372914-) 1 TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 61 TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 121 TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATTTG 181 AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 241 TTTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 301 CTTTGGACTA CCGCAAAGTT GTTACTATTT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 361 TTTTTGGGTC TTTTGGCACA AGGGGAGCTA AGCAGAACAC TAAAAAGAAA TTTTTTGATG 421 CATTAATTAA AAGATTGAAG GACGTCAACT GAGTTTGCGA ATCTTTGTAT GTTATGTTCC 481 TTAGGGAGAT TTCCATATTG TAGTTGTGTT GATTACTTGC TGATTTCATA TCTAGCTTCC 541 TTTTTTTTTG CAAATTGCCT ACCATTTTAC GTAATTTTTT CCTCCCCTAG TTCCACATTG 601 ATTGCTGTAT TATTTTTCAG AGCATACATA TTTTTTTGCA ACTCAAAAAA AAAAAAAAAA 661 AAAAAAAAA Predicted gene structure (within gDNA segment 25387 to 28198): Exon 1 25997 26642 ( 646 n); cDNA 1 646 ( 646 n); score: 0.981 Intron 1 26643 27180 ( 538 n); Pd: 0.000 (s: 0.94), Pa: 0.853 (s: 0) Exon 2 27181 27192 ( 12 n); cDNA 647 658 ( 12 n); score: 0.667 Intron 2 27193 27645 ( 453 n); Pd: 0.610 (s: 0), Pa: 0.376 (s: 0) Exon 3 27646 27656 ( 11 n); cDNA 659 669 ( 11 n); score: 0.636 MATCH C09HBa0278J12.1+ SGN-E372914- 0.981 669 1.000 C PGS_C09HBa0278J12.1+_SGN-E372914- (25997 26642,27181 27192,27646 27656) Alignment (genomic DNA sequence = upper lines): TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 26056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGTTCA AGTTCTGAAG AGAGTTTTGC AAGATGTTCT GTGTCATATA TCAGAGATGA 60 TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 26116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGGGGC TTTACTGGGG GAATCAGTTA AAAGGTTCAA CGTGAATGCT GTTATGGCTC 120 TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATCTG 26176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTGATGTTGA TATCCGTATG TTGGAATCAT TTGCTGAAAA CCAAGCTCCT CTCCTATTTG 180 AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 26236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGATGC TAGTCAGCTG AAAGCAGCAT TGGGCGAGTC CAGGCAGTTG GTTAATCTAC 240 TCTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 26296 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAAGCAA TCACCCGGAA AATTTCCTGA ATCCAGTTAT TAGAGAGAGA AGTTATAATG 300 CTTTGGACTA CCGCAAAGTT GTTACTATCT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 26356 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| CTTTGGACTA CCGCAAAGTT GTTACTATTT CGGAAAAGAT GAAGGATCAA AGTGACAGAC 360 TTTTTGGGTC TTTTGGCACA AGGGGAGCTA AGCAGAACAC TAAAAAGAAA TCTCTTGATG 26416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | | |||||| TTTTTGGGTC TTTTGGCACA AGGGGAGCTA AGCAGAACAC TAAAAAGAAA TTTTTTGATG 420 CATTAATTAA AAGATTGAAG GACGTCAACT GAGTCTGCGA ATCTCTGTAT GTTATGTTCC 26476 |||||||||| |||||||||| |||||||||| |||| ||||| |||| ||||| |||||||||| CATTAATTAA AAGATTGAAG GACGTCAACT GAGTTTGCGA ATCTTTGTAT GTTATGTTCC 480 TTAGGGAGAT CTCCATATTG TAGTTGTGTT GATTACTTGC TGATTTCATA TCTAGCTTCC 26536 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGGAGAT TTCCATATTG TAGTTGTGTT GATTACTTGC TGATTTCATA TCTAGCTTCC 540 TTTTTTTCTG CAAATTGCCT ACCATTTTAC GTAATTTTTT CCTCCCCTAG TTCCACATTG 26596 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTG CAAATTGCCT ACCATTTTAC GTAATTTTTT CCTCCCCTAG TTCCACATTG 600 ATTGCTGTAT TATTCTTCAG AGCATACATA TTCTTTTGCA ACTCAGATAT AGTCTTTTTA 26656 |||||||||| |||| ||||| |||||||||| || ||||||| ||||| ATTGCTGTAT TATTTTTCAG AGCATACATA TTTTTTTGCA ACTCAA.... .......... 646 TCTCATGAAA CTAGTCTCTT CTCGTTTGGC TTCTTTTTCC GTAGAATAAT TACATCTTCT 26716 .......... .......... .......... .......... .......... .......... 646 CTTCGATTTA TTTGCTGTAT TGTATCTCTC TATCGTATAA TCATATATTT GCTGCTGTGT 26776 .......... .......... .......... .......... .......... .......... 646 CTTATGAGTT ACACAACACT TTCTGCTTAA CTTGGCAAAA CTTCAGCTTG CATATGAGAA 26836 .......... .......... .......... .......... .......... .......... 646 ATGGCTTCAA ATACCAGGTG AACCTGACAT TTACAGGATG ATATTGGATT TATTTATACA 26896 .......... .......... .......... .......... .......... .......... 646 GTGATTCTAA TAGATTTCCT TTTCTCATTA AACCTGTAGC TTTAGTACTA GTTTGACTGT 26956 .......... .......... .......... .......... .......... .......... 646 GATTGTTTGA GAACAGAATA TTTATGGAAT AATTTCATTA AGAGACTTGT AATTACTTGT 27016 .......... .......... .......... .......... .......... .......... 646 TACTGGACTA GAATAAGACA CGGTAGCTAG TCCAGCTAAA AAGTTGAGGG ACTTGTACGC 27076 .......... .......... .......... .......... .......... .......... 646 ATTTTTAATA ATCACGGTGT TCGAATCAGT ATTTGATTCA ACTACCAATC CAATGGACTA 27136 .......... .......... .......... .......... .......... .......... 646 TTTGTTGTAC AAATTATATT AATGAAACGT GGACAACGAA ACAGAGCAAC AAACAAGTTA 27196 | || ||| || .......... .......... .......... .......... ....AAAAAA AAAAAA.... 658 GTCATACCTA TAAAACAAAC ATCTGTCAAC CTCATATCTT ACCATACTAT GCATTCACCC 27256 .......... .......... .......... .......... .......... .......... 658 TTATAAAAAA AAACGGTGAA CTTTGGAACA ACGAAAAACA TCAATGTTCA CAGAAATGTC 27316 .......... .......... .......... .......... .......... .......... 658 AATAGCTTCA ACAAGAAGTA TTTTTTACCT CTTTCTCTTC TTTTTTGCCA CTGCAGTTTC 27376 .......... .......... .......... .......... .......... .......... 658 AAGAAATGAG AAGCTATCAG CTTATGAAGA GCTACAGCGT TATGATTTCC CAATGGGGAT 27436 .......... .......... .......... .......... .......... .......... 658 TCTTCCAAAA GGAGTAAAAG ACTACAAATT AAACCCCAAA ACAGGTGAAT TCTCAGCTTA 27496 .......... .......... .......... .......... .......... .......... 658 TCTTAATTCT ACCTGCAGCT TCAAATTGGA GAACTCATAT CAACTGAATT ACAAGCCTGT 27556 .......... .......... .......... .......... .......... .......... 658 TATAAAAGGA GTTATATCTA AAGGCAGGCT TAGGAAACTG TGTGGTGTTA GTGTAAAGGT 27616 .......... .......... .......... .......... .......... .......... 658 GGTGTTGCTA TGGCTTAACA TTGTTGAAGT TAACAGAAAA 27656 || | |||| .......... .......... .........A AAAAAAAAAA 669 hqPGS_C09HBa0278J12.1+_SGN-E372914- (25997 26642) ******************************************************************************** EST sequence 123 +strand 507 n (File: SGN-E356588+) 1 AGTTGGTTAA TCTACTCTTA AGCAATCACC CGGAAAATTT CCTGAATCCA GTTATTAGAG 61 AGAGAAGTTA TAATGCTTTG GACTACCGCA AAGTTGTTAC TATCTCGGAA AAGATGAAGG 121 ATCAAAGTGA CAGACTTTTT GGGTCTTTTG GCACAAGGGG AGCTAAGCAG AACACTAAAA 181 AGAAATCTCT TGATGCATTA ATTAAAAGAT TGAAGGACGT CAACTGAGTC TGCGAATCTC 241 TGTATGTTAT GTTCCTTAGG GAGATCTCCA TATTGTAGTT GTGTTGATTA CTTGCTGATT 301 TCATATCTAG CTTCCTTTTT TTCTGCAAAT TGCCTACCAT TTTACGTAAT TTTTTCCTCC 361 CCTAGTTCCA CATTGATTGC TGTATTATTC TTCAGAGCAT ACATATTCTT TTGCAACTCA 421 GATATAGTCT TTTTATCTCA TGAAACTAGT CTCTTCTCGT TTGGCTTCTT TTTCCGTAGA 481 ATAATTACAT CTTCTCTTCG ATTTAAA Predicted gene structure (within gDNA segment 25622 to 27356): Exon 1 26222 26726 ( 505 n); cDNA 1 505 ( 505 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E356588+ 1.000 505 0.996 C PGS_C09HBa0278J12.1+_SGN-E356588+ (26222 26726) Alignment (genomic DNA sequence = upper lines): AGTTGGTTAA TCTACTCTTA AGCAATCACC CGGAAAATTT CCTGAATCCA GTTATTAGAG 26281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGGTTAA TCTACTCTTA AGCAATCACC CGGAAAATTT CCTGAATCCA GTTATTAGAG 60 AGAGAAGTTA TAATGCTTTG GACTACCGCA AAGTTGTTAC TATCTCGGAA AAGATGAAGG 26341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAGTTA TAATGCTTTG GACTACCGCA AAGTTGTTAC TATCTCGGAA AAGATGAAGG 120 ATCAAAGTGA CAGACTTTTT GGGTCTTTTG GCACAAGGGG AGCTAAGCAG AACACTAAAA 26401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGTGA CAGACTTTTT GGGTCTTTTG GCACAAGGGG AGCTAAGCAG AACACTAAAA 180 AGAAATCTCT TGATGCATTA ATTAAAAGAT TGAAGGACGT CAACTGAGTC TGCGAATCTC 26461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATCTCT TGATGCATTA ATTAAAAGAT TGAAGGACGT CAACTGAGTC TGCGAATCTC 240 TGTATGTTAT GTTCCTTAGG GAGATCTCCA TATTGTAGTT GTGTTGATTA CTTGCTGATT 26521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGTTAT GTTCCTTAGG GAGATCTCCA TATTGTAGTT GTGTTGATTA CTTGCTGATT 300 TCATATCTAG CTTCCTTTTT TTCTGCAAAT TGCCTACCAT TTTACGTAAT TTTTTCCTCC 26581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATCTAG CTTCCTTTTT TTCTGCAAAT TGCCTACCAT TTTACGTAAT TTTTTCCTCC 360 CCTAGTTCCA CATTGATTGC TGTATTATTC TTCAGAGCAT ACATATTCTT TTGCAACTCA 26641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAGTTCCA CATTGATTGC TGTATTATTC TTCAGAGCAT ACATATTCTT TTGCAACTCA 420 GATATAGTCT TTTTATCTCA TGAAACTAGT CTCTTCTCGT TTGGCTTCTT TTTCCGTAGA 26701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATAGTCT TTTTATCTCA TGAAACTAGT CTCTTCTCGT TTGGCTTCTT TTTCCGTAGA 480 ATAATTACAT CTTCTCTTCG ATTTA 26726 |||||||||| |||||||||| ||||| ATAATTACAT CTTCTCTTCG ATTTA 505 hqPGS_C09HBa0278J12.1+_SGN-E356588+ (26222 26726) ******************************************************************************** EST sequence 6 +strand 604 n (File: SGN-E313277+) 1 CCTTATAAAA AAAAAACGGT GAACTTTGGA ACAACGAAAA ACATCAATGT TCACAGAAAT 61 GTCAATAGCT TCAACAAGAA GTATTTTTTA CCTCTTTCTC TTCTTTTTTG CCACTGCAGT 121 TTCAAGAAAT GAGAAGCTAT CAGCTTATGA AGAGCTACAG CGTTATGATT TCCCAATGGG 181 GATTCTTCCA AAAGGAGTAA AAGACTACAA ATTAAACCCC AAAACAGGTG AATTCTCAGC 241 TTATCTTAAT TCTACCTGCA GCTTCAAATT GGAGAACTCA TATCAACTGA ATTACAAGCC 301 TGTTATAAAA GGAGTTATAT CTAAAGGCAG GCTTAGGAAA CTGTGTGGTG TTAGTGTAAA 361 GGTGGTGTTG CTATGGCTTA ACATTGTTGA AGTTAACAGA AAAGGTAAGA ATCTTGAGTT 421 TTCAGTTGGA CTCGCTTCGG CGAATTTTCC GGTTGAGAAT TTTGAGGAAT GTCCACAGTG 481 TGGACGTGGA TTGAATTGTG TTGATGAAGA TGACAATGTT GTGTCTTCCT TTTAACTACT 541 TTGATTGAAA TCTAGTTGTT TTTTTTTTTT TGTTTTCTGG TGGTGGAAAT GATGTGTTTT 601 TTTG Predicted gene structure (within gDNA segment 26591 to 28467): Exon 1 27255 27857 ( 603 n); cDNA 1 604 ( 604 n); score: 0.996 MATCH C09HBa0278J12.1+ SGN-E313277+ 0.996 603 0.998 C PGS_C09HBa0278J12.1+_SGN-E313277+ (27255 27857) Alignment (genomic DNA sequence = upper lines): CCTTAT-AAA AAAAAACGGT GAACTTTGGA ACAACGAAAA ACATCAATGT TCACAGAAAT 27313 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTATAAAA AAAAAACGGT GAACTTTGGA ACAACGAAAA ACATCAATGT TCACAGAAAT 60 GTCAATAGCT TCAACAAGAA GTATTTTTTA CCTCTTTCTC TTCTTTTTTG CCACTGCAGT 27373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAATAGCT TCAACAAGAA GTATTTTTTA CCTCTTTCTC TTCTTTTTTG CCACTGCAGT 120 TTCAAGAAAT GAGAAGCTAT CAGCTTATGA AGAGCTACAG CGTTATGATT TCCCAATGGG 27433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGAAAT GAGAAGCTAT CAGCTTATGA AGAGCTACAG CGTTATGATT TCCCAATGGG 180 GATTCTTCCA AAAGGAGTAA AAGACTACAA ATTAAACCCC AAAACAGGTG AATTCTCAGC 27493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTTCCA AAAGGAGTAA AAGACTACAA ATTAAACCCC AAAACAGGTG AATTCTCAGC 240 TTATCTTAAT TCTACCTGCA GCTTCAAATT GGAGAACTCA TATCAACTGA ATTACAAGCC 27553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTTAAT TCTACCTGCA GCTTCAAATT GGAGAACTCA TATCAACTGA ATTACAAGCC 300 TGTTATAAAA GGAGTTATAT CTAAAGGCAG GCTTAGGAAA CTGTGTGGTG TTAGTGTAAA 27613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATAAAA GGAGTTATAT CTAAAGGCAG GCTTAGGAAA CTGTGTGGTG TTAGTGTAAA 360 GGTGGTGTTG CTATGGCTTA ACATTGTTGA AGTTAACAGA AAAGGTAAGA ATCTTGAGTT 27673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTGTTG CTATGGCTTA ACATTGTTGA AGTTAACAGA AAAGGTAAGA ATCTTGAGTT 420 TTCAGTTGGA CTCGCTTCGG CGAATTTTCC GGTTGAGAAT TTTGAGGAAT GTCCACAGTG 27733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTTGGA CTCGCTTCGG CGAATTTTCC GGTTGAGAAT TTTGAGGAAT GTCCACAGTG 480 TGGACGTGGA TTGAATTGTG TTGATGAAGA TGACAATGTT GTGTCTTCCT TTTAACTACT 27793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACGTGGA TTGAATTGTG TTGATGAAGA TGACAATGTT GTGTCTTCCT TTTAACTACT 540 TTGATTGAAA TCTAGTTGTT TTTTTTTTTT TGTTTTCTGG TGGTGGAAAT GATGTGTTTT 27853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTGAAA TCTAGTTGTT TTTTTTTTTT TGTTTTCTGG TGGTGGAAAT GATGTGTTTT 600 TTTG 27857 |||| TTTG 604 hqPGS_C09HBa0278J12.1+_SGN-E313277+ (27255 27857) ******************************************************************************** EST sequence 49 +strand 421 n (File: SGN-E338920+) 1 AGCTTCTCCG GTCATCGGCG ATGAGGATTC TCAGTCCCCG ACGGCATACG AGATTCTACA 61 GGAATACGAT ATTCCGGCAG GGATACTTCC GAAAGGCGTA ACAAGGTACG AACTCGACAA 121 AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 181 TGATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGGC TTGCGAAACT 241 GAAAGGCGTA CAGGTGAAAC TGCTTTTTTT TTTTGTCAAT ATTGTGGGAG TTACTCGTGA 301 CGGCGATGAT CTCGGTTTCT CCGTCGGTGT TTCTTCTGTT GATTTTGCAA TTGAGTACTT 361 CTATGAACCG CCAGAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAACGGGAC 421 T Predicted gene structure (within gDNA segment 32577 to 34243): Exon 1 33177 33597 ( 421 n); cDNA 1 421 ( 421 n); score: 0.990 MATCH C09HBa0278J12.1+ SGN-E338920+ 0.990 421 1.000 C PGS_C09HBa0278J12.1+_SGN-E338920+ (33177 33597) Alignment (genomic DNA sequence = upper lines): AGCTTCTCCG GTCATCGGCG ATGAGGATTC TCAGTCCCCG ACGGCATACG AGATTCTACA 33236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCTCCG GTCATCGGCG ATGAGGATTC TCAGTCCCCG ACGGCATACG AGATTCTACA 60 GGAATACGAT ATTCCGGCAG GGATACTTCC GAAGGGCGTA ACAAGGTACG AACTCGACAA 33296 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GGAATACGAT ATTCCGGCAG GGATACTTCC GAAAGGCGTA ACAAGGTACG AACTCGACAA 120 AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 33356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 180 TGATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGGC TTGCGAACTT 33416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | TGATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGGC TTGCGAAACT 240 GAAAGGCGTA CAGGTGAAAC TGCTTTTTTT TTTTGTCAAT ATTGTGGGAG TTACTCGTGA 33476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGCGTA CAGGTGAAAC TGCTTTTTTT TTTTGTCAAT ATTGTGGGAG TTACTCGTGA 300 CGGCGATGAT CTCGGTTTCT CCGTCGGTGT TTCTTCTGTT GATTTTGCAA TTGAGTACTT 33536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCGATGAT CTCGGTTTCT CCGTCGGTGT TTCTTCTGTT GATTTTGCAA TTGAGTACTT 360 CTATGAACCG CCAGAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAACGGTAC 33596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CTATGAACCG CCAGAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAACGGGAC 420 T 33597 | T 421 hqPGS_C09HBa0278J12.1+_SGN-E338920+ (33177 33597) ******************************************************************************** EST sequence 151 +strand 580 n (File: SGN-E347597+) 1 GGTAACTACG AACAAGATAT GCCTTCTGTA GCCCTTCCCT TATGCATCCT CCTACTCCTA 61 CTCCAACTCT CTGCAGCTTC ACCGGTCGTC GGCGATGAGG ATTCTCAGTC CCCGACGGCG 121 TATGAGATTC TTCAGGAATA CGACTTTCCG GTAGGGATAC TTCCGAAGGG CGTAACAAGG 181 TACGAACTCG ACAAAACAAC GGGCAATTTC GCCGTTTACT TTAACAAATC GTGCAGTTTC 241 AGCATAAGCG GCTATAATCT CAAGTATATG AGTAAAATTA CTGGTAAAAT CTCTAAGGAT 301 CGACTTGCGA ACTTGAAAGG CGTACAGGTG AAAGTGCTTT TGTTTTGGAT TAATATTGTC 361 GAAGTTACTC GTGACGGCGA CGATCTCGAT TTCTCCGTCG GTATTGCTTC TGCTGATTTT 421 GCAATTGATA ACTTCTATGA ATCGCCACAG TGTGGATGTG GATTTGATTG TGTCAATTCT 481 GGAGAAAATG GCACAGGTAA GTTCGATTTG AAGCTGCTTA TCACTTCGTC TTGAATCGTA 541 AATTTTCAGA AATCGACTGT AGATTAAGAT GTTTTAGGAT Predicted gene structure (within gDNA segment 31711 to 35120): Exon 1 33179 33688 ( 510 n); cDNA 77 580 ( 504 n); score: 0.898 MATCH C09HBa0278J12.1+ SGN-E347597+ 0.898 510 0.879 C PGS_C09HBa0278J12.1+_SGN-E347597+ (33179 33688) Alignment (genomic DNA sequence = upper lines): CTTCTCCGGT CATCGGCGAT GAGGATTCTC AGTCCCCGAC GGCATACGAG ATTCTACAGG 33238 |||| ||||| | |||||||| |||||||||| |||||||||| ||| || ||| ||||| |||| CTTCACCGGT CGTCGGCGAT GAGGATTCTC AGTCCCCGAC GGCGTATGAG ATTCTTCAGG 136 AATACGATAT TCCGGCAGGG ATACTTCCGA AGGGCGTAAC AAGGTACGAA CTCGACAAAA 33298 ||||||| | ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AATACGACTT TCCGGTAGGG ATACTTCCGA AGGGCGTAAC AAGGTACGAA CTCGACAAAA 196 CAACGGGCAA TTTCGCCGTT TACTTTAACA AATCGTGCAG TTTCAGCATA AGCGGCTATG 33358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAACGGGCAA TTTCGCCGTT TACTTTAACA AATCGTGCAG TTTCAGCATA AGCGGCTATA 256 ATCTCAAGTA TATGAGTAAA ATTACTGGTA AAATCTCTAA GGATCGGCTT GCGAACTTGA 33418 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ATCTCAAGTA TATGAGTAAA ATTACTGGTA AAATCTCTAA GGATCGACTT GCGAACTTGA 316 AAGGCGTACA GGTGAAACTG CTTTTTTTTT TTGTCAATAT TGTGGGAGTT ACTCGTGACG 33478 |||||||||| ||||||| || ||||| |||| | ||||| ||| | |||| |||||||||| AAGGCGTACA GGTGAAAGTG CTTTTGTTTT GGATTAATAT TGTCGAAGTT ACTCGTGACG 376 GCGATGATCT CGGTTTCTCC GTCGGTGTTT CTTCTGTTGA TTTTGCAATT GAGTACTTCT 33538 |||| ||||| || ||||||| |||||| || |||||| ||| |||||||||| || |||||| GCGACGATCT CGATTTCTCC GTCGGTATTG CTTCTGCTGA TTTTGCAATT GATAACTTCT 436 ATGAACCGCC AGAGTGTGGA TGTGGATTTG ATTGTGTCAA TTCTGGAGAA AACGGTACTG 33598 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| || || || | ATGAATCGCC ACAGTGTGGA TGTGGATTTG ATTGTGTCAA TTCTGGAGAA AATGGCACAG 496 GTGAGTTCAA TTTAAAGCAG CTTATCTCTT CCACTTGAAT TGTTAACTAA AATTTTCAGA 33658 || ||||| | ||| |||| | |||||| ||| | ||||||| | | | |||||||||| GTAAGTTCGA TTTGAAGCTG CTTATCACTT CGTCTTGAAT CG-----T-A AATTTTCAGA 550 GATTGGCTGT AAATTCAGTT GATTTGGGAT 33688 || | |||| | ||| || | | ||| |||| AATCGACTGT AGATTAAGAT GTTTTAGGAT 580 hqPGS_C09HBa0278J12.1+_SGN-E347597+ (33179 33688) ******************************************************************************** EST sequence 163 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 36540 to 29335): Exon 1 35925 35860 ( 66 n); cDNA 84 148 ( 65 n); score: 0.705 Intron 1 35859 35706 ( 154 n); Pd: 0.622 (s: 0.68), Pa: 0.000 (s: 0.90) Exon 2 35705 35545 ( 161 n); cDNA 149 304 ( 156 n); score: 0.863 MATCH C09HBa0278J12.1- SGN-E578389+ 0.817 227 0.324 C PGS_C09HBa0278J12.1-_SGN-E578389+ (35925 35860,35705 35545) Alignment (genomic DNA sequence = upper lines): ATTTTACTTC AAATATTGCA GAGAAAAAGG CCAACGAATT ATACAATTG- CGAATTATAC 35867 |||||| | ||||||||| | |||| ||| || |||||| ||||||||| | ||| ATTTTA-TAA TAATATTGCA GCGAAATAGG -CAGCGAATT ATACAATTGT AGTTAAATAG 141 AATTGCAGTG AAATACAATT TTCTCTAGCT TTATACAACA GAAGTGTATA TATTGTGTTT 35807 || || GATAGCG... .......... .......... .......... .......... .......... 148 CTATTTTTGT ATAAAGCGAG AAAAGTATAT ATCTTCTTGC TATACACTTA TAATTATGCA 35747 .......... .......... .......... .......... .......... .......... 148 ATATACATAT ATTTTAATTC GATTCAACTG TATGCAAAAC AAATTATACA ATTGCAGCAA 35687 ||||||||| |||||||| | .......... .......... .......... .......... .AATTATACA ATTGCAGCGA 167 AATAGGCCAG CGAATTATAC AATTGTATAT GTATAGCAAA TTATACAGTT TTATGTTTGC 35627 |||||||||| |||||||||| || | | || || ||| || ||||||| || |||||||||| AATAGGCCAG CGAATTATAC AA-T-T-TAG GT-CAGCGAA TTATACAATT TTATGTTTGC 223 TATGGAGTGC AATTATACAA AATTTTGCTA TAACATACAA ATATAAATTT TTTATTTGCT 35567 ||||||| || |||||| | | || |||| || || ||||||| |||| ||||| ||| |||| | TATGGAGCGC AATTATGC-A AACTTTGTTA TAGCATACAA ATATGAATTT TTTGTTTGTT 282 ATACGTGAAA GTCGTCCATA AA 35545 ||| |||||| || | |||| || ATATGTGAAA GTTGCCCATT AA 304 hqPGS_C09HBa0278J12.1-_SGN-E578389+ (35925 35860,35705 35545) ******************************************************************************** EST sequence 369 +strand 651 n (File: SGN-E394141+) 1 TTTTTTTTTT TTTTTTTTTT CTATCAATGT GATACTGGGG GAATATATAT ATATCTTTTT 61 AATGTTAATT AATCGAAATT GAGAAGCTGA AATTTCACCT ATAACATCAA GTATACACGT 121 TACCTATGCC CTGGTTGTTT ATAGCTGAAT TTCAAGCCCC TTTTCTTATT CTATTATTAC 181 ACCCCTAATG AAATGATTAA GGAACTTATT AAAGCAAAAC AACTAAATTC TTATTTTGCA 241 ATCTTTTCTT GTCATTCACA AGCGATAATT CTAAATCTTT TTCCTTCTCT CCATTTTATA 301 CAAGCTCTTG GGAAAATTGT ATATAATAGC AAACTAGTAA TCTAACTAAA TGGAGTAGCT 361 AGAGTTTGAT TTAATTGTGC TCCATAGCAA ACGTTAGCTA AAGTTTGTCA GGCGTCTCCC 421 TCCCAAAAAT CTCGCTCGCC ACTCTCCATT CTCGCTCGCC TATCTCGCTA TATACACAGA 481 AGTGTATAAA TTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 541 AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 601 TATTGCAAAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT G Predicted gene structure (within gDNA segment 41509 to 35117): Exon 1 40784 40753 ( 32 n); cDNA 221 250 ( 30 n); score: 0.750 Intron 1 40752 36845 (3908 n); Pd: 0.000 (s: 0), Pa: 0.373 (s: 0.52) Exon 2 36844 36785 ( 60 n); cDNA 251 308 ( 58 n); score: 0.550 Intron 2 36784 36204 ( 581 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0.90) Exon 3 36203 35862 ( 342 n); cDNA 309 651 ( 343 n); score: 0.909 PPA cDNA 20 1 MATCH C09HBa0278J12.1- SGN-E394141+ 0.856 434 0.667 C PGS_C09HBa0278J12.1-_SGN-E394141+ (40784 40753,36844 36785,36203 35862) Alignment (genomic DNA sequence = upper lines): AATTACATTC TTATGAATGT CAATCTTTAT TTGCTAATAA AAATTTAGTC AACTTTCAAA 40725 || || |||| |||| || |||||||| || AACTAAATTC TTAT-TTTG- CAATCTTTTC TT........ .......... .......... 250 ATTCTATTGT GCCTCATAAA ATGGAATTTA AAATATATTA TTTGAAGATG ACCTTAAAAT 40665 .......... .......... .......... .......... .......... .......... 250 TACTAAGAAT CACAGTAATT ATCAACATGA AATATTTAAA AGGCTTTAAA AAATTATTTG 40605 .......... .......... .......... .......... .......... .......... 250 ATTCAAACAC AGAAGGTGAC ATATGTTATT CAAAAAAATA TTATAAATTA CAAAATTTAA 40545 .......... .......... .......... .......... .......... .......... 250 TACTTTAGCA TATCTCATAA AATATCTTGT ATCTCACTTT GTAAAGAGAC AAGGAAAAAA 40485 .......... .......... .......... .......... .......... .......... 250 TATTGAAAAA TTGGCTCTTG CCTCCCCAAG AACTTGTCTT CCTTACTTGC TTTCTTTACT 40425 .......... .......... .......... .......... .......... .......... 250 GTTTTGTGGC CTGTTTGTTT GACTGTCTTG CTTATTGTTC CTTGTGTGTT TGGTTGGCTG 40365 .......... .......... .......... .......... .......... .......... 250 TTGGACTGAG TTTTGAAGAG TTGTGCAAGC CTTCATATAC TGTCCCACGA GGTGAAAATT 40305 .......... .......... .......... .......... .......... .......... 250 TGACCCTGTG ACAAGAATAT CTCAAGACAA CTAACAAAAG GCTAATTTTT GCACTGCTGG 40245 .......... .......... .......... .......... .......... .......... 250 GATGATTTTA AAATATTTAA TTTTAATTCT ATATTATAAT TTGATCAAAA AATTAAAATG 40185 .......... .......... .......... .......... .......... .......... 250 ATATAATTTT TTAAAAATAC TTTCTTTTTT TCAAAAAGAT TAGCCTAGTT TGACTTAGAA 40125 .......... .......... .......... .......... .......... .......... 250 TGAAGTTTTA GAAAATAAAG AAGATTTTTT AATTTTGTGA TTCTAATTTA AAGTTATATC 40065 .......... .......... .......... .......... .......... .......... 250 AAACATACCA AAATACCCTT TAATCTTGTA ATCTTAAATA TGTTACGTAA AAATTAAAAT 40005 .......... .......... .......... .......... .......... .......... 250 AAAAGTGTTG TAAAAAAAAA TGAATCATTC TTTTTAAAAT AGATTAAAAA AAATAAGATC 39945 .......... .......... .......... .......... .......... .......... 250 ATTCTTTTGA AACGGAGAGA GTTGCTCTAA TATTACTTCT ATTCTATTTA CTTTTATCTA 39885 .......... .......... .......... .......... .......... .......... 250 AATTTAGAAA GTTTATTTAC TATTTGAAAT CGGATTTAAA AAATGTAAAA TTACTTAAAT 39825 .......... .......... .......... .......... .......... .......... 250 ACACTACTTT AATTATCTTA ATAACCATTT ATCCCAATTT ATTTTAAAAT TTTCAAAAAT 39765 .......... .......... .......... .......... .......... .......... 250 CCCTTATTCC CCCAATTTAA AAAAATATAA AAGATAGATA CATCAAGATT TCCCACCTTT 39705 .......... .......... .......... .......... .......... .......... 250 TTTTCACCCA ATTGGCAAGT TTTACTTTAA CAAAAACTAA ATCCTATTTT CAAGCTATCC 39645 .......... .......... .......... .......... .......... .......... 250 ACTTCCCCAT TAACATCACC AATTAAAATT TACCATATTA ATTTTATTCC TTTTCCTTTT 39585 .......... .......... .......... .......... .......... .......... 250 TATTTCCCTA CATTGTAGGT GTATAATTGT CTACTCCCCA TTCCACACGT TTGCAGGTAA 39525 .......... .......... .......... .......... .......... .......... 250 ATTTTGAATT CCAGTTCAAA TTTTCATCCA TATTTAATAT TTTGTAGGAC TCTCTTTCCA 39465 .......... .......... .......... .......... .......... .......... 250 TCTAACCAGA TTTTCTCCTT CATTCTCTTT CATCTTGTGA GTTTACAAAT ATCATGGAAG 39405 .......... .......... .......... .......... .......... .......... 250 ATTGTGGTAA TTTCAAACGT GTTTATGATT CTGATGATGA GTTGTGGGCT GAGAATAGAT 39345 .......... .......... .......... .......... .......... .......... 250 CTAAGAGACT ACATGACCCA TTGTTGATGA AGAACAACAA TGTACTTGAG CCAAAGAAGA 39285 .......... .......... .......... .......... .......... .......... 250 AGACTGAAGA AATCAAGAAA AAAAGGCCAA GAAAAGTTAC ATCAACTGTT TCAAGACCCA 39225 .......... .......... .......... .......... .......... .......... 250 CACTTCCTAA GGTATGTGTT TAAAATTCAT AATTTTGTGT TTTTGTTTAT AATACCCTAA 39165 .......... .......... .......... .......... .......... .......... 250 TTGTAAACTG TTGTATGTGT TTGTAAACTG AAATTAACAA TGAAGATTGA TACATTCAAA 39105 .......... .......... .......... .......... .......... .......... 250 TTAAAGTACA ACCAACATGT TTCTTTACAT TTTATAGTGT GTATCAGATT CATAATTTTT 39045 .......... .......... .......... .......... .......... .......... 250 GTCAATAATT TTGAGTTGTG TATCACTGAA AGCACAGTGT CTGTAAAATT TTAAGATTCT 38985 .......... .......... .......... .......... .......... .......... 250 TCAGTAAAAT TTCGATTAGT AAAAGCATTA TGTGGTTTTC AGTTTTAAGG TCTATAATAT 38925 .......... .......... .......... .......... .......... .......... 250 GGTAATAATT TTGTGAGTTG TTATTAGTAA AATATAACTG TGTGGTACAG TTGTGAGATG 38865 .......... .......... .......... .......... .......... .......... 250 TATCAGATAC ATTAACTCTA TTTACAATGT TTATAAGTTC AGTTAATAAA ATGTATCATA 38805 .......... .......... .......... .......... .......... .......... 250 TACATATTAT GATTCTTATG TCTTATAATT TAACTTTAAT GTATCATATA CATTCAATTA 38745 .......... .......... .......... .......... .......... .......... 250 AAACTTAATA TGATGGTTGT TATAGAATAT AATAGGTACC ACTTATAGAA TGTATCATAT 38685 .......... .......... .......... .......... .......... .......... 250 ACATCTTAAA AGCATTACGT GGTTTTCAGT TTTAAGGTCT ATAATATGGT AATAATTTTG 38625 .......... .......... .......... .......... .......... .......... 250 TGGGTTATTA TTAGTAAAAT AAAATTTTGT GGTACAGTTG TGGGATGTAT CAGATACACT 38565 .......... .......... .......... .......... .......... .......... 250 AAGTCTATTT ACAATGTTTA TAAGTTTAGT TAATAAGATG TATCATATAC ATATTATGAT 38505 .......... .......... .......... .......... .......... .......... 250 TTCTTTGTCT TATAAATTAA AATTTAATGT ATCATATATA TTCATATAAT GCAGTGCATG 38445 .......... .......... .......... .......... .......... .......... 250 AATTATGTTA TTTTATTTTT TGTATAAACA GGGTATGCAT TATGTTATTA AAAAAATTCC 38385 .......... .......... .......... .......... .......... .......... 250 GGTGCATCCA TTGTAGGGAC TGCGGGTTAT ACGTAGCTAC ATTTGCAGAG TTTTTGAGTG 38325 .......... .......... .......... .......... .......... .......... 250 ACCAACTTGT TATACCACCT GATACTGATA GACATCTTGC AAATTACCTA CGCAATAGAT 38265 .......... .......... .......... .......... .......... .......... 250 ATGCTGCATT GTTATGGAGA TACGGCAGTG ACAAGGTCAA TGGTGGATAC ATAAGTGACA 38205 .......... .......... .......... .......... .......... .......... 250 ATGACGATAC ACCAAAGCCT AAGGATCAAT TCACAACACC AACTGAAGAT GACATTGTTA 38145 .......... .......... .......... .......... .......... .......... 250 ACATAGATTA GTAATTAGCT GGGACAGGAT GAACAAGTTT ATATGTTGTT TTTTGTTGAA 38085 .......... .......... .......... .......... .......... .......... 250 GACAATTATC TTTTGTGTTT TTCTAAAAGC TTATTGGTAT TACAATTTTT TGTTAGCTAT 38025 .......... .......... .......... .......... .......... .......... 250 GAATGTTATG TTTTTTCAAG TTATTGTTTT AGAAACAGTT GTTTCTTTAC AAATTTTTTA 37965 .......... .......... .......... .......... .......... .......... 250 CTGTTTCAGT TTAAGTAATT TTGACATTTA ATTTACAAAA TGAAGTATAT GACACTTAAG 37905 .......... .......... .......... .......... .......... .......... 250 TTCTAATGTG TATGATACAT TATTAAGTAT TTTTCACTTA TAAAAATGAT GTATATGATA 37845 .......... .......... .......... .......... .......... .......... 250 CATAAGTATA ATATATACAT GAAAAAATAT TGCAGTTATA TATTTAGCAA CTTGAATTAT 37785 .......... .......... .......... .......... .......... .......... 250 ATGAATGTAT ATGATACATC ATATACATAA ACAAACTTAA CCCTGATTAA TATTACAGTG 37725 .......... .......... .......... .......... .......... .......... 250 AAACGTACCA CTAGAATGTA CTATATCAAA ATTATAGTTC ATAAGGCTTT ACACACTAAA 37665 .......... .......... .......... .......... .......... .......... 250 CATGTCGTAC ACATTTGAAC AAGTCAAGTT TTGGGACACT AGAATAACTC ATGATGGAGT 37605 .......... .......... .......... .......... .......... .......... 250 ATACACGAAA AATATAATAT ATTTTTCACT CAAATGAATG TATCTGATAC ATAAGTTACA 37545 .......... .......... .......... .......... .......... .......... 250 CAAATAAACT CAGGTTGAAT TACTGTTACA CTGAAACCCA AACACTGTTG AATATAATAT 37485 .......... .......... .......... .......... .......... .......... 250 ATCAAATTTA TAACTCATAA GTATGTATAC ACGAACCATA TAGTAAACAA TTGAACAAAT 37425 .......... .......... .......... .......... .......... .......... 250 CAATTTTTTT GTACACTTGA ATATCTCAAA ATACAATATA TTTGAACATC AAATTAAGTT 37365 .......... .......... .......... .......... .......... .......... 250 GTGTAACCAA TACACTTTAT TTAATCAAAA TTATAAAGAA AAACATGGAT AGAAGTACCA 37305 .......... .......... .......... .......... .......... .......... 250 TGAACACTAA TGTCCTATTT TAAAACATTC TTTCAATTCT CTTTCGGGAA GAAAGTACAA 37245 .......... .......... .......... .......... .......... .......... 250 GTTCTCCTGT TATGTCCTTC TTGTCCACAC TGCCCACAAC AATTATTGTT CACTGTTATT 37185 .......... .......... .......... .......... .......... .......... 250 TTCTCATCCG CATTTTTCTT TCTTCGCTTT CTTGGTCGTC CAGCCAACCT TCTGTACCTA 37125 .......... .......... .......... .......... .......... .......... 250 GGTGGCCGGA CAATTTTATC TAAAACACAT TCTGGAACGT TCCAATCATC CTTATCTGGC 37065 .......... .......... .......... .......... .......... .......... 250 ATTGGAACCA TTACAACCTC GTACGTTTTT TCTAATGCAT ACGACTTGTA GTAATCAGAG 37005 .......... .......... .......... .......... .......... .......... 250 CAATATGGGT GCAAATTGGT AACATTCTTG TGCTTCAAAA CTGCAATTGC GTGTGCGCAA 36945 .......... .......... .......... .......... .......... .......... 250 GGTATCTCAT CATGTTGAAA CCTTCCACAT GTGCAAGTTT TCCTCTCAAG GCATACAATG 36885 .......... .......... .......... .......... .......... .......... 250 TATCTTTTTT CGGATTCATG AACTGTGAAA ATATATTCAG ATGATGGAAC AACCTAAAAA 36825 | || || || | | || .......... .......... .......... .......... GTCAT-TCAC AAGCGATAAT 269 TTTAAGAAGT TAGTGATACA TTACGTAATA TACAATTTAT ATATCATTTT TAAAAAAAAC 36765 | ||| | | | | | | | | | || ||||| | | TCTAA-ATCT TTTTCCTTCT CTCCATTTTA TACAAGCTCT .......... .......... 308 AATTAACATT GAAAAATAAT TTGTATCTGA TACATAAAAC AGAAAGTCAA TGAAATTGAT 36705 .......... .......... .......... .......... .......... .......... 308 AAATACCTTC ATCTTTGAAC TTTTAGATGC GTTTACAATC AATATCTCCT CAAATCTTCG 36645 .......... .......... .......... .......... .......... .......... 308 GCCAACAACA ATTCCATCAA CTTTGTAACC TTCATAATTA ATATCGATTA CCCAAATTCC 36585 .......... .......... .......... .......... .......... .......... 308 AGAATGCCGC AGCAGAATTG AGATATTCAT CTTCAAAACT TTTTTTTTTA AATTCTTAAT 36525 .......... .......... .......... .......... .......... .......... 308 ATGCAGATCA ACCTTTACAA GAATATTTTT GAATTATGAA GCTCATCTGA TTTAAAATTT 36465 .......... .......... .......... .......... .......... .......... 308 GAATTTACTA ATCAGTTACA CAATCTGATG ACCTTTAATA ACGTGATTTC AGTTAATAAT 36405 .......... .......... .......... .......... .......... .......... 308 AACAGAAATC ACGATAATTA ATCCTAATTA ATCGCAGCAG CTGTTAAAAT GGGATGTATC 36345 .......... .......... .......... .......... .......... .......... 308 AGTACTTATG TATCCCGCGC CAGAGTGATG TATCCCGCTT CTTTGATTTT TAAGGGATTT 36285 .......... .......... .......... .......... .......... .......... 308 TTAGTAATTT CAATTCTTAA AGGGACAAAT GGTCATTTTG TATTTATAAT ATGTGGTTCC 36225 .......... .......... .......... .......... .......... .......... 308 TATAATTTAT ACTTTAAAAA ATGGGAAAAT TGTATATAAT AGCAAACTAA TAACCTAAAT 36165 ||||||||| |||||||||| ||||||||| ||| || || .......... .......... .TGGGAAAAT TGTATATAAT AGCAAACTAG TAATCT-AAC 346 TAAATGGAAT AACTAGGGTT TGATTTAATT GTGCTCCATA GTAAACATTA GCTAAAATTT 36105 |||||||| | | |||| ||| |||||||||| |||||||||| | |||| ||| |||||| ||| TAAATGGAGT AGCTAGAGTT TGATTTAATT GTGCTCCATA GCAAACGTTA GCTAAAGTTT 406 GCCA-GCGTC TCTCCTCCAA AAATCTCGCT CGCCACTCTC CATTCTCGCT CGCCTCTCTC 36046 | || ||||| || | |||| |||||||||| |||||||||| |||||||||| ||||| |||| GTCAGGCGTC TCCCTCCCAA AAATCTCGCT CGCCACTCTC CATTCTCGCT CGCCTATCTC 466 GCTTTATACA CAGAAGTGTA T-AATTTTAT TTCTGTTTTG TATAAAGCGA GAGAAAATTG 35987 ||| |||||| |||||||||| | |||| | | |||| ||||| |||||||||| |||||||||| GCTATATACA CAGAAGTGTA TAAATTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG 526 TATATTCACA TGCAAAAATG TATATCTTCG TGTTATACAC TTAATTATAC AATTTACAAA 35927 ||||| |||| || |||||| |||||||||| |||||||||| |||||||||| || ||||||| TATATACACA TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA 586 CATTTTACTT CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG CGAATTATAC 35867 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||| CATTTTACTT CAAATATTGC AAAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT 646 AATTG 35862 ||||| AATTG 651 hqPGS_C09HBa0278J12.1-_SGN-E394141+ (40784 40753,36844 36785,36203 35862) ******************************************************************************** EST sequence 283 +strand 605 n (File: SGN-E392605+) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGTG GGAATATATA TATATATCTA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATT Predicted gene structure (within gDNA segment 41519 to 35299): Exon 1 40784 40753 ( 32 n); cDNA 222 251 ( 30 n); score: 0.750 Intron 1 40752 36845 (3908 n); Pd: 0.000 (s: 0), Pa: 0.373 (s: 0.52) Exon 2 36844 36785 ( 60 n); cDNA 252 309 ( 58 n); score: 0.550 Intron 2 36784 36204 ( 581 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0.90) Exon 3 36203 35909 ( 295 n); cDNA 310 605 ( 296 n); score: 0.905 PPA cDNA 19 1 MATCH C09HBa0278J12.1- SGN-E392605+ 0.845 387 0.640 C PGS_C09HBa0278J12.1-_SGN-E392605+ (40784 40753,36844 36785,36203 35909) Alignment (genomic DNA sequence = upper lines): AATTACATTC TTATGAATGT CAATCTTTAT TTGCTAATAA AAATTTAGTC AACTTTCAAA 40725 || || |||| |||| || |||||||| || AACTAAATTC TTAT-TTTG- CAATCTTTTC TT........ .......... .......... 251 ATTCTATTGT GCCTCATAAA ATGGAATTTA AAATATATTA TTTGAAGATG ACCTTAAAAT 40665 .......... .......... .......... .......... .......... .......... 251 TACTAAGAAT CACAGTAATT ATCAACATGA AATATTTAAA AGGCTTTAAA AAATTATTTG 40605 .......... .......... .......... .......... .......... .......... 251 ATTCAAACAC AGAAGGTGAC ATATGTTATT CAAAAAAATA TTATAAATTA CAAAATTTAA 40545 .......... .......... .......... .......... .......... .......... 251 TACTTTAGCA TATCTCATAA AATATCTTGT ATCTCACTTT GTAAAGAGAC AAGGAAAAAA 40485 .......... .......... .......... .......... .......... .......... 251 TATTGAAAAA TTGGCTCTTG CCTCCCCAAG AACTTGTCTT CCTTACTTGC TTTCTTTACT 40425 .......... .......... .......... .......... .......... .......... 251 GTTTTGTGGC CTGTTTGTTT GACTGTCTTG CTTATTGTTC CTTGTGTGTT TGGTTGGCTG 40365 .......... .......... .......... .......... .......... .......... 251 TTGGACTGAG TTTTGAAGAG TTGTGCAAGC CTTCATATAC TGTCCCACGA GGTGAAAATT 40305 .......... .......... .......... .......... .......... .......... 251 TGACCCTGTG ACAAGAATAT CTCAAGACAA CTAACAAAAG GCTAATTTTT GCACTGCTGG 40245 .......... .......... .......... .......... .......... .......... 251 GATGATTTTA AAATATTTAA TTTTAATTCT ATATTATAAT TTGATCAAAA AATTAAAATG 40185 .......... .......... .......... .......... .......... .......... 251 ATATAATTTT TTAAAAATAC TTTCTTTTTT TCAAAAAGAT TAGCCTAGTT TGACTTAGAA 40125 .......... .......... .......... .......... .......... .......... 251 TGAAGTTTTA GAAAATAAAG AAGATTTTTT AATTTTGTGA TTCTAATTTA AAGTTATATC 40065 .......... .......... .......... .......... .......... .......... 251 AAACATACCA AAATACCCTT TAATCTTGTA ATCTTAAATA TGTTACGTAA AAATTAAAAT 40005 .......... .......... .......... .......... .......... .......... 251 AAAAGTGTTG TAAAAAAAAA TGAATCATTC TTTTTAAAAT AGATTAAAAA AAATAAGATC 39945 .......... .......... .......... .......... .......... .......... 251 ATTCTTTTGA AACGGAGAGA GTTGCTCTAA TATTACTTCT ATTCTATTTA CTTTTATCTA 39885 .......... .......... .......... .......... .......... .......... 251 AATTTAGAAA GTTTATTTAC TATTTGAAAT CGGATTTAAA AAATGTAAAA TTACTTAAAT 39825 .......... .......... .......... .......... .......... .......... 251 ACACTACTTT AATTATCTTA ATAACCATTT ATCCCAATTT ATTTTAAAAT TTTCAAAAAT 39765 .......... .......... .......... .......... .......... .......... 251 CCCTTATTCC CCCAATTTAA AAAAATATAA AAGATAGATA CATCAAGATT TCCCACCTTT 39705 .......... .......... .......... .......... .......... .......... 251 TTTTCACCCA ATTGGCAAGT TTTACTTTAA CAAAAACTAA ATCCTATTTT CAAGCTATCC 39645 .......... .......... .......... .......... .......... .......... 251 ACTTCCCCAT TAACATCACC AATTAAAATT TACCATATTA ATTTTATTCC TTTTCCTTTT 39585 .......... .......... .......... .......... .......... .......... 251 TATTTCCCTA CATTGTAGGT GTATAATTGT CTACTCCCCA TTCCACACGT TTGCAGGTAA 39525 .......... .......... .......... .......... .......... .......... 251 ATTTTGAATT CCAGTTCAAA TTTTCATCCA TATTTAATAT TTTGTAGGAC TCTCTTTCCA 39465 .......... .......... .......... .......... .......... .......... 251 TCTAACCAGA TTTTCTCCTT CATTCTCTTT CATCTTGTGA GTTTACAAAT ATCATGGAAG 39405 .......... .......... .......... .......... .......... .......... 251 ATTGTGGTAA TTTCAAACGT GTTTATGATT CTGATGATGA GTTGTGGGCT GAGAATAGAT 39345 .......... .......... .......... .......... .......... .......... 251 CTAAGAGACT ACATGACCCA TTGTTGATGA AGAACAACAA TGTACTTGAG CCAAAGAAGA 39285 .......... .......... .......... .......... .......... .......... 251 AGACTGAAGA AATCAAGAAA AAAAGGCCAA GAAAAGTTAC ATCAACTGTT TCAAGACCCA 39225 .......... .......... .......... .......... .......... .......... 251 CACTTCCTAA GGTATGTGTT TAAAATTCAT AATTTTGTGT TTTTGTTTAT AATACCCTAA 39165 .......... .......... .......... .......... .......... .......... 251 TTGTAAACTG TTGTATGTGT TTGTAAACTG AAATTAACAA TGAAGATTGA TACATTCAAA 39105 .......... .......... .......... .......... .......... .......... 251 TTAAAGTACA ACCAACATGT TTCTTTACAT TTTATAGTGT GTATCAGATT CATAATTTTT 39045 .......... .......... .......... .......... .......... .......... 251 GTCAATAATT TTGAGTTGTG TATCACTGAA AGCACAGTGT CTGTAAAATT TTAAGATTCT 38985 .......... .......... .......... .......... .......... .......... 251 TCAGTAAAAT TTCGATTAGT AAAAGCATTA TGTGGTTTTC AGTTTTAAGG TCTATAATAT 38925 .......... .......... .......... .......... .......... .......... 251 GGTAATAATT TTGTGAGTTG TTATTAGTAA AATATAACTG TGTGGTACAG TTGTGAGATG 38865 .......... .......... .......... .......... .......... .......... 251 TATCAGATAC ATTAACTCTA TTTACAATGT TTATAAGTTC AGTTAATAAA ATGTATCATA 38805 .......... .......... .......... .......... .......... .......... 251 TACATATTAT GATTCTTATG TCTTATAATT TAACTTTAAT GTATCATATA CATTCAATTA 38745 .......... .......... .......... .......... .......... .......... 251 AAACTTAATA TGATGGTTGT TATAGAATAT AATAGGTACC ACTTATAGAA TGTATCATAT 38685 .......... .......... .......... .......... .......... .......... 251 ACATCTTAAA AGCATTACGT GGTTTTCAGT TTTAAGGTCT ATAATATGGT AATAATTTTG 38625 .......... .......... .......... .......... .......... .......... 251 TGGGTTATTA TTAGTAAAAT AAAATTTTGT GGTACAGTTG TGGGATGTAT CAGATACACT 38565 .......... .......... .......... .......... .......... .......... 251 AAGTCTATTT ACAATGTTTA TAAGTTTAGT TAATAAGATG TATCATATAC ATATTATGAT 38505 .......... .......... .......... .......... .......... .......... 251 TTCTTTGTCT TATAAATTAA AATTTAATGT ATCATATATA TTCATATAAT GCAGTGCATG 38445 .......... .......... .......... .......... .......... .......... 251 AATTATGTTA TTTTATTTTT TGTATAAACA GGGTATGCAT TATGTTATTA AAAAAATTCC 38385 .......... .......... .......... .......... .......... .......... 251 GGTGCATCCA TTGTAGGGAC TGCGGGTTAT ACGTAGCTAC ATTTGCAGAG TTTTTGAGTG 38325 .......... .......... .......... .......... .......... .......... 251 ACCAACTTGT TATACCACCT GATACTGATA GACATCTTGC AAATTACCTA CGCAATAGAT 38265 .......... .......... .......... .......... .......... .......... 251 ATGCTGCATT GTTATGGAGA TACGGCAGTG ACAAGGTCAA TGGTGGATAC ATAAGTGACA 38205 .......... .......... .......... .......... .......... .......... 251 ATGACGATAC ACCAAAGCCT AAGGATCAAT TCACAACACC AACTGAAGAT GACATTGTTA 38145 .......... .......... .......... .......... .......... .......... 251 ACATAGATTA GTAATTAGCT GGGACAGGAT GAACAAGTTT ATATGTTGTT TTTTGTTGAA 38085 .......... .......... .......... .......... .......... .......... 251 GACAATTATC TTTTGTGTTT TTCTAAAAGC TTATTGGTAT TACAATTTTT TGTTAGCTAT 38025 .......... .......... .......... .......... .......... .......... 251 GAATGTTATG TTTTTTCAAG TTATTGTTTT AGAAACAGTT GTTTCTTTAC AAATTTTTTA 37965 .......... .......... .......... .......... .......... .......... 251 CTGTTTCAGT TTAAGTAATT TTGACATTTA ATTTACAAAA TGAAGTATAT GACACTTAAG 37905 .......... .......... .......... .......... .......... .......... 251 TTCTAATGTG TATGATACAT TATTAAGTAT TTTTCACTTA TAAAAATGAT GTATATGATA 37845 .......... .......... .......... .......... .......... .......... 251 CATAAGTATA ATATATACAT GAAAAAATAT TGCAGTTATA TATTTAGCAA CTTGAATTAT 37785 .......... .......... .......... .......... .......... .......... 251 ATGAATGTAT ATGATACATC ATATACATAA ACAAACTTAA CCCTGATTAA TATTACAGTG 37725 .......... .......... .......... .......... .......... .......... 251 AAACGTACCA CTAGAATGTA CTATATCAAA ATTATAGTTC ATAAGGCTTT ACACACTAAA 37665 .......... .......... .......... .......... .......... .......... 251 CATGTCGTAC ACATTTGAAC AAGTCAAGTT TTGGGACACT AGAATAACTC ATGATGGAGT 37605 .......... .......... .......... .......... .......... .......... 251 ATACACGAAA AATATAATAT ATTTTTCACT CAAATGAATG TATCTGATAC ATAAGTTACA 37545 .......... .......... .......... .......... .......... .......... 251 CAAATAAACT CAGGTTGAAT TACTGTTACA CTGAAACCCA AACACTGTTG AATATAATAT 37485 .......... .......... .......... .......... .......... .......... 251 ATCAAATTTA TAACTCATAA GTATGTATAC ACGAACCATA TAGTAAACAA TTGAACAAAT 37425 .......... .......... .......... .......... .......... .......... 251 CAATTTTTTT GTACACTTGA ATATCTCAAA ATACAATATA TTTGAACATC AAATTAAGTT 37365 .......... .......... .......... .......... .......... .......... 251 GTGTAACCAA TACACTTTAT TTAATCAAAA TTATAAAGAA AAACATGGAT AGAAGTACCA 37305 .......... .......... .......... .......... .......... .......... 251 TGAACACTAA TGTCCTATTT TAAAACATTC TTTCAATTCT CTTTCGGGAA GAAAGTACAA 37245 .......... .......... .......... .......... .......... .......... 251 GTTCTCCTGT TATGTCCTTC TTGTCCACAC TGCCCACAAC AATTATTGTT CACTGTTATT 37185 .......... .......... .......... .......... .......... .......... 251 TTCTCATCCG CATTTTTCTT TCTTCGCTTT CTTGGTCGTC CAGCCAACCT TCTGTACCTA 37125 .......... .......... .......... .......... .......... .......... 251 GGTGGCCGGA CAATTTTATC TAAAACACAT TCTGGAACGT TCCAATCATC CTTATCTGGC 37065 .......... .......... .......... .......... .......... .......... 251 ATTGGAACCA TTACAACCTC GTACGTTTTT TCTAATGCAT ACGACTTGTA GTAATCAGAG 37005 .......... .......... .......... .......... .......... .......... 251 CAATATGGGT GCAAATTGGT AACATTCTTG TGCTTCAAAA CTGCAATTGC GTGTGCGCAA 36945 .......... .......... .......... .......... .......... .......... 251 GGTATCTCAT CATGTTGAAA CCTTCCACAT GTGCAAGTTT TCCTCTCAAG GCATACAATG 36885 .......... .......... .......... .......... .......... .......... 251 TATCTTTTTT CGGATTCATG AACTGTGAAA ATATATTCAG ATGATGGAAC AACCTAAAAA 36825 | || || || | | || .......... .......... .......... .......... GTCAT-TCAC AAGCGATAAT 270 TTTAAGAAGT TAGTGATACA TTACGTAATA TACAATTTAT ATATCATTTT TAAAAAAAAC 36765 | ||| | | | | | | | | | || ||||| | | TCTAA-ATCT TTTTCCTTCT CTCCATTTTA TACAAGCTCT .......... .......... 309 AATTAACATT GAAAAATAAT TTGTATCTGA TACATAAAAC AGAAAGTCAA TGAAATTGAT 36705 .......... .......... .......... .......... .......... .......... 309 AAATACCTTC ATCTTTGAAC TTTTAGATGC GTTTACAATC AATATCTCCT CAAATCTTCG 36645 .......... .......... .......... .......... .......... .......... 309 GCCAACAACA ATTCCATCAA CTTTGTAACC TTCATAATTA ATATCGATTA CCCAAATTCC 36585 .......... .......... .......... .......... .......... .......... 309 AGAATGCCGC AGCAGAATTG AGATATTCAT CTTCAAAACT TTTTTTTTTA AATTCTTAAT 36525 .......... .......... .......... .......... .......... .......... 309 ATGCAGATCA ACCTTTACAA GAATATTTTT GAATTATGAA GCTCATCTGA TTTAAAATTT 36465 .......... .......... .......... .......... .......... .......... 309 GAATTTACTA ATCAGTTACA CAATCTGATG ACCTTTAATA ACGTGATTTC AGTTAATAAT 36405 .......... .......... .......... .......... .......... .......... 309 AACAGAAATC ACGATAATTA ATCCTAATTA ATCGCAGCAG CTGTTAAAAT GGGATGTATC 36345 .......... .......... .......... .......... .......... .......... 309 AGTACTTATG TATCCCGCGC CAGAGTGATG TATCCCGCTT CTTTGATTTT TAAGGGATTT 36285 .......... .......... .......... .......... .......... .......... 309 TTAGTAATTT CAATTCTTAA AGGGACAAAT GGTCATTTTG TATTTATAAT ATGTGGTTCC 36225 .......... .......... .......... .......... .......... .......... 309 TATAATTTAT ACTTTAAAAA ATGGGAAAAT TGTATATAAT AGCAAACTAA TAACCTAAAT 36165 ||||||||| |||||||||| ||||||||| ||| || || .......... .......... .TGGGAAAAT TGTATATAAT AGCAAACTAG TAATCT-AAC 347 TAAATGGAAT AACTAGGGTT TGATTTAATT GTGCTCCATA GTAAACATTA GCTAAAATTT 36105 |||||||| | | |||| ||| |||||||||| |||||||||| | |||| ||| |||||| ||| TAAATGGAGT AGCTAGAGTT TGATTTAATT GTGCTCCATA GCAAACGTTA GCTAAAGTTT 407 GCCA-GCGTC TCTCCTCCAA AAATCTCGCT CGCCACTCTC CATTCTCGCT CGCCTCTCTC 36046 | || ||||| || | |||| |||||||||| |||||||||| |||||||||| ||||| |||| GTCAGGCGTC TCCCTCCCAA AAATCTCGCT CGCCACTCTC CATTCTCGCT CGCCTATCTC 467 GCTTTATACA CAGAAGTGTA T-AATTTTAT TTCTGTTTTG TATAAAGCGA GAGAAAATTG 35987 ||| |||||| |||||||||| | |||| | | |||| ||||| |||||||||| |||||||||| GCTATATACA CAGAAGTGTA TAAATTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG 527 TATATTCACA TGCAAAAATG TATATCTTCG TGTTATACAC TTAATTATAC AATTTACAAA 35927 ||||| |||| || |||||| |||||||||| |||||||||| |||||||||| || ||||||| TATATACACA TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA 587 CATTTTACTT CAAATATT 35909 |||||||||| |||||||| CATTTTACTT CAAATATT 605 hqPGS_C09HBa0278J12.1-_SGN-E392605+ (40784 40753,36844 36785,36203 35909) ******************************************************************************** EST sequence 294 +strand 372 n (File: SGN-E200682+) 1 AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 61 GCTATGCAGC GCAATTATGC AAAGTTTGCT AGCATACAAA TATGAATTTT TTATTTGCTA 121 TATGTAAAAG TTGCCCAATA ATGTATCATG GACATATGAA AATAGTTCTT CCAAAATCAG 181 TTTATCTCCG AGTTAATACT TTAGATGGTC ATTCAACTAA TCTTTGTGCT CAAAACCCCG 241 ATTCAAATAG TCATTTGTTT GGTATCGCCG AAGGAGCGGG AACGGTCATT CTAACTCTTC 301 TCGGGGGATT CCACCCATAC TTTCTCTCAA AAAGTCACTC AACTTTCAAT TTTTCCTTAA 361 AAGTATTCAA TT Predicted gene structure (within gDNA segment 36324 to 31953): Exon 1 35688 35533 ( 156 n); cDNA 1 154 ( 154 n); score: 0.849 MATCH C09HBa0278J12.1- SGN-E200682+ 0.849 156 0.419 C PGS_C09HBa0278J12.1-_SGN-E200682+ (35688 35533) Alignment (genomic DNA sequence = upper lines): AAAATAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 35629 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 60 GCTATGGAGT GCAATTATAC AAAATTTTGC TATAACATAC AAATATAAAT TTTTTATTTG 35569 |||||| || |||||||| | ||| | |||| || ||||| |||||| ||| |||||||||| GCTATGCAGC GCAATTATGC AAAGT-TTGC --TAGCATAC AAATATGAAT TTTTTATTTG 117 CTATACGTGA AAGTCGTCCA -TAAAAAATA AATGACA 35533 ||||| || | |||| | ||| ||| || | |||| CTATATGTAA AAGTTGCCCA ATAATGTATC ATGGACA 154 hqPGS_C09HBa0278J12.1-_SGN-E200682+ (35688 35533) ******************************************************************************** EST sequence 197 +strand 680 n (File: SGN-E379333+) 1 AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 61 GCTATGCAGC GCAATTATGC AAAGTTTGCT AGCATACAAA TATGAATTTT TTATTTGCTA 121 TATGTAAAAG TTGCCCAATA ATGTATCATG GACATATGAA AATAGTTCTT CCAAAATCAG 181 TTTATCTCCG AGTTAATACT TTAGATGGTC ATTCAACTAA TCTTTGTGCT CAAAACCCCG 241 ATTCAAATAG TCATTTGTTT GGTATCGCCG AAGGAGCGGG AACGGTCATT CTAACTCTTC 301 TCGGGGGATT CCACCCATAC TTTCTCTCAA AAAGTCACTC AACTTTCAAT TTTTCCTTAA 361 AAGTATTCAA TTATCCATAC ATTTCTCAAA AAGTGACTCA ACTTTGAATT TTAACTCAAA 421 AGTGACTCAA CTATTTATTT TTTCCTCAAG TCACTCAATC TATTAAATTA CTTTTTAAAT 481 TAAAATTTAT TTACGTTAAT TGTTTATATA ACAAATCAAA ATTTTTTAAA AAAATAAAAA 541 ATACTATTTA GTGATCCACC CACCTAACCC GACCCATTAA AAAATATAAT ATGAACCATT 601 TTATTTTACC CTTAATTCTA AATTATTCCC TCTCTTTCTC CTCTACATTT AATATATACA 661 CATAGCTTAT TTAATTCGAT Predicted gene structure (within gDNA segment 36324 to 28873): Exon 1 35688 35550 ( 139 n); cDNA 1 136 ( 136 n); score: 0.892 Intron 1 35549 32908 (2642 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.62) Exon 2 32907 32849 ( 59 n); cDNA 137 191 ( 55 n); score: 0.610 Intron 2 32848 29597 (3252 n); Pd: 0.000 (s: 0.62), Pa: 0.969 (s: 0.67) Exon 3 29596 29555 ( 42 n); cDNA 192 229 ( 38 n); score: 0.667 MATCH C09HBa0278J12.1- SGN-E379333+ 0.808 240 0.353 C PGS_C09HBa0278J12.1-_SGN-E379333+ (35688 35550,32907 32849,29596 29555) Alignment (genomic DNA sequence = upper lines): AAAATAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 35629 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 60 GCTATGGAGT GCAATTATAC AAAATTTTGC TATAACATAC AAATATAAAT TTTTTATTTG 35569 |||||| || |||||||| | ||| | |||| || ||||| |||||| ||| |||||||||| GCTATGCAGC GCAATTATGC AAAGT-TTGC --TAGCATAC AAATATGAAT TTTTTATTTG 117 CTATACGTGA AAGTCGTCCA TAAAAAATAA ATGACAAAGC GCGTCTGTAT TTTGTTTTTT 35509 ||||| || | |||| | || CTATATGTAA AAGTTGCCC. .......... .......... .......... .......... 136 ACTTTGCCTC AGCCGAAAAA TTCTTTGATT TTCCCATGCA TGTGGGCCAT TCCAAGTCTC 35449 .......... .......... .......... .......... .......... .......... 136 TTAATAAATA TGGAGCCCAC CTCACAATCC CTTTCCATTC TATTTTTTTT AAAAAATTAT 35389 .......... .......... .......... .......... .......... .......... 136 TTAAATTCAT TTATCTTACT TTTTTTAAAA AAATTTACAG TATACTTAAA AATTACATTT 35329 .......... .......... .......... .......... .......... .......... 136 AAGATATTAT AAATTATGAT ATAGTAAAAA ATTTATAAAT TGATATAAGC GGGATTGTGA 35269 .......... .......... .......... .......... .......... .......... 136 AATTTTATTA TTTCATAACG ATATTATTTA ATCGATAAAT TAATATTTAT TAGTTTAAAG 35209 .......... .......... .......... .......... .......... .......... 136 AACGATTTGA AATTTGATGA AACTTAATTT TGATTATATC AATCATTGTA TCTTACTAAT 35149 .......... .......... .......... .......... .......... .......... 136 TTATGTATCA TATTTATTGA TTTAATATAA AAACAATATA TATAAAATAC GTCAAGATTA 35089 .......... .......... .......... .......... .......... .......... 136 TTGTATCTTA CTGATTTCAA CCTTGTAATG TTGTGATAAT AAGAGCTTTC AAGATGTACT 35029 .......... .......... .......... .......... .......... .......... 136 ATCAAACAAA TTTTATCATG AGATATTAAA AAGTTATGAA GTGGCACAAA TTGTTGCAGC 34969 .......... .......... .......... .......... .......... .......... 136 AAAGATCAAT ATTTTGTATG CTATGAATTT TGAGATTTCT ATTTGGACAA CAAATGTTCA 34909 .......... .......... .......... .......... .......... .......... 136 ACGAGAGACA ATAGCAAATA ATTTTTTTTG CAATCTTAGA TAATTTGAAT GAACCTACTT 34849 .......... .......... .......... .......... .......... .......... 136 GTGAAAACGT CATTTATGAA CTTGAGATCA TGATTAATGA TCTCGATTAC CTCAATAAAA 34789 .......... .......... .......... .......... .......... .......... 136 TAGATGTGCA ATAACATGTT TGATTATTCG GGTGAAAGGG ATACATATTT AGAGGTTTAG 34729 .......... .......... .......... .......... .......... .......... 136 AAATTAGAAG AAATTGTGAA TACCGTCGGA AAAAGCAATG TTGAAGATGA TACTGTATCG 34669 .......... .......... .......... .......... .......... .......... 136 TTGGAACCAA TTGCGCATTA GACAACACTT ATTGCATCTA GAGAACTCTT CACAAATTTA 34609 .......... .......... .......... .......... .......... .......... 136 TTGTGCAATT TAAAAATACA ATATTAGAGC TTTTGAATGC AATAAAAAAA AAGTAGATAT 34549 .......... .......... .......... .......... .......... .......... 136 ATTTGTAGTT TTAAAGAATT ATTAATTTAT CATATTAATG GAACCATATA TTTATATAGA 34489 .......... .......... .......... .......... .......... .......... 136 CGTCTTCAGA AATTATATTA TCTATTATCT TATCAAAATT CATAATTTTT TCATTGGCCC 34429 .......... .......... .......... .......... .......... .......... 136 AAATCAAAAT CGGAGAAAAT AATTATTCTA GAGAAAATAT TAATTTATCA AGTATTTATT 34369 .......... .......... .......... .......... .......... .......... 136 TATACGGATA TTACTTTAAA AATTACATAA CATACACTAT AAATTATAAT AATTAAAGAC 34309 .......... .......... .......... .......... .......... .......... 136 TTAAAGTATT TTTACTATTT GATAAGAGGC AATAAACATA CTAATCTTAA ACACACGTCA 34249 .......... .......... .......... .......... .......... .......... 136 TATGTTTGAA ATTTTATAAA TCATAATAGT TAACAACTTA AAATACTCTA TCATGTATTA 34189 .......... .......... .......... .......... .......... .......... 136 ATGATGCTAA AATTACAATA AAATGACGTC AAAAGAACTA TAAAAAATAA TAATTAACAA 34129 .......... .......... .......... .......... .......... .......... 136 TTTAAAATAT TTTTAAAAAA ATTAAATCAA TTTTTAAAAT TCTATTAGTA AAACATGAAT 34069 .......... .......... .......... .......... .......... .......... 136 TCTTATTGAT AAAAAAATAC TTTTAAAAGA ACATTTAGGA CTCTCCTAAT TAGACATGTC 34009 .......... .......... .......... .......... .......... .......... 136 ACATGTGTCA CGAAAATTAA AATAAAAAGA ATAATATATA TTATTTAAAA TTAATATAAA 33949 .......... .......... .......... .......... .......... .......... 136 CTGTTAATAA ATTCTAATAA TTAGCAAGTT AAAATATTTC AGAAAAAATA ATAAATTTTT 33889 .......... .......... .......... .......... .......... .......... 136 CAAGTTTATT TATATCACAT AAATTAAAAT TAAAAATTAA TATGTAGCGA ATAAAAGAAA 33829 .......... .......... .......... .......... .......... .......... 136 ATTTTATTTA TTTCAATTTC CATAAGAGTC CACGGAGATA TATGAAAAAA AATACATATT 33769 .......... .......... .......... .......... .......... .......... 136 CATTCTAAAG GAGCATCAAA AGCATATGCT TCCAGTCCCG TGGGATTCTG AAATACAAAG 33709 .......... .......... .......... .......... .......... .......... 136 TTGCCCTAAT TCCAAATTCC ATCCCAAATC AACTGAATTT ACAGCCAATC TCTGAAAATT 33649 .......... .......... .......... .......... .......... .......... 136 TTAGTTAACA ATTCAAGTGG AAGAGATAAG CTGCTTTAAA TTGAACTCAC CAGTACCGTT 33589 .......... .......... .......... .......... .......... .......... 136 TTCTCCAGAA TTGACACAAT CAAATCCACA TCCACACTCT GGCGGTTCAT AGAAGTACTC 33529 .......... .......... .......... .......... .......... .......... 136 AATTGCAAAA TCAACAGAAG AAACACCGAC GGAGAAACCG AGATCATCGC CGTCACGAGT 33469 .......... .......... .......... .......... .......... .......... 136 AACTCCCACA ATATTGACAA AAAAAAAAAG CAGTTTCACC TGTACGCCTT TCAAGTTCGC 33409 .......... .......... .......... .......... .......... .......... 136 AAGCCGATCC TTAGAGATTT TACCAGTAAT TTTACTCATA TACTTGAGAT CATAGCCGCT 33349 .......... .......... .......... .......... .......... .......... 136 TATGCTGAAA CTGCACGATT TGTTAAAGTA AACGGCGAAA TTGCCCGTTG TTTTGTCGAG 33289 .......... .......... .......... .......... .......... .......... 136 TTCGTACCTT GTTACGCCCT TCGGAAGTAT CCCTGCCGGA ATATCGTATT CCTGTAGAAT 33229 .......... .......... .......... .......... .......... .......... 136 CTCGTATGCC GTCGGGGACT GAGAATCCTC ATCGCCGATG ACCGGAGAAG CTGCAAAGAG 33169 .......... .......... .......... .......... .......... .......... 136 TAGGAGGAGG AAAATGCATA AGGGAAAAGC TACAGAAGGC ATATCTGGTT AGTAGTTAAA 33109 .......... .......... .......... .......... .......... .......... 136 TTAAATTAAC TTGAAGTTGA GATATTACTC TTATTTATTT TAATTTGAAA TTGAGATATT 33049 .......... .......... .......... .......... .......... .......... 136 AATCTTAAAT ATTGAAGAGC TTGAATTTGA AACTTGAACT ATTGAGTAGC TATGGTGTAG 32989 .......... .......... .......... .......... .......... .......... 136 CCCTATGAAA AACGTTGGGT AAATGGGGAA GACAACGGAA ATAAGTTATT TTAGAATTAA 32929 .......... .......... .......... .......... .......... .......... 136 TTAATTATTT TCTAATCAAA GATAAAAATA ATATTGCTAT ATCAAAATAA GTAATTGCCG 32869 | || || || | || || ||||| | || || || .......... .......... .AATAATGTA TCATGGACAT ATGAAAAT-A GTTCTT-CC- 172 ATGAATTATT TTATCATCTT GTTGCAATGT ATCTCGAGCA TTAAATTAGC TTATCATGTA 32809 | ||| | | ||||| | A-AAATCAGT TTATCTCCGA .......... .......... .......... .......... 191 TAAAAGTTAT ATTATATTAG TGTATCATGT GTAAAATATA ATGTATCTTA CTTAACGATT 32749 .......... .......... .......... .......... .......... .......... 191 AATGTATTCG TGCATCAGAT TAATGTACAA CACTTATATT ATTATATCAG TTTAAGTTTT 32689 .......... .......... .......... .......... .......... .......... 191 TCTGTAAGTG CAACTTTCAC ATATAGCGAA TATAAAATTT ATATTTGTAT ACTATAACAA 32629 .......... .......... .......... .......... .......... .......... 191 AGTTTGCATA ATTGCGTTGT ATAGCAAACA TATATATGTA TAATTTGCTG TACATATACA 32569 .......... .......... .......... .......... .......... .......... 191 ATTTAAGTGA ATTGTATAAA AGAAAGTGTA TAAAAAGAGA AAGATAAAGA GACTTGGCTA 32509 .......... .......... .......... .......... .......... .......... 191 GAGAATTGCA TAGAACGAAG TGTATAATTA TAAGTGTATA GAACGATTAT ATGATTTGAA 32449 .......... .......... .......... .......... .......... .......... 191 TTTGTATAAA ATGAGAAAGA GAGAAAGACA AAAGAGACTT TGGTAGGGAA TATACAACTG 32389 .......... .......... .......... .......... .......... .......... 191 AATCGAATTG TATAAAACGA GAAATAGATA AATTATATAC AATTTGAATT TGTATAATAC 32329 .......... .......... .......... .......... .......... .......... 191 GAGAAAGAGA GAGATTGGAC AGGGGAGTAC TTTTATTGTA ATAATTATAA GCGTATATGA 32269 .......... .......... .......... .......... .......... .......... 191 TAAAAATACA TGTATTTGAA TGTGTTTATA TAATTTTCTC TCGCTTTATA CAATTAGAAA 32209 .......... .......... .......... .......... .......... .......... 191 CACAATTTAT ATAACTTTAT ATAAAAATAA CACTCCACAC ACATTTAAGA TGATAAATAT 32149 .......... .......... .......... .......... .......... .......... 191 CAAGTTATAA GTGTAAATTG GGTATATAGC ATTTTATGTA GTCATAAACT TATAAGGGAC 32089 .......... .......... .......... .......... .......... .......... 191 AAATAGTACA TTTGTCGTAA CAGTATGTGA TTTTTGACAT TTTCTCTTTA TTTTTCTTTT 32029 .......... .......... .......... .......... .......... .......... 191 TAGTCGATCT CAAAAAGATT GACACATTTC TATATTAAGT ATTCCCTTCA TTCACTATTG 31969 .......... .......... .......... .......... .......... .......... 191 ATTGTATGAT AAAATCATGT CCTTGAAAAA AAAATTAATA TAAGGTGCAA TTTTATTAAT 31909 .......... .......... .......... .......... .......... .......... 191 ATAACCTTAC TACTAATCAT AATTAAAATG GTCTAAACAA CTTTTTTCAC ATTAAAGTAG 31849 .......... .......... .......... .......... .......... .......... 191 TCGTTTAACA TTAAAATGAT TACTTTTTGA AATTAGTATT ATAAAATCAC TAACAGTTTA 31789 .......... .......... .......... .......... .......... .......... 191 TTGATTGTTT AAAATCAACA ATTCGTTTAG ATAACTATTT AAGTAGCTAT GTAATTATTA 31729 .......... .......... .......... .......... .......... .......... 191 AGGACAAAAT TGAAAAAACA TAACTAATTA TTTGTTAATT ATTTAAATTG ACAATTAGTT 31669 .......... .......... .......... .......... .......... .......... 191 AGGACAATTA TTTTAGTGTA CTTATCAAAT TATAATAAAC GGAATGAATA ACAATTTAAA 31609 .......... .......... .......... .......... .......... .......... 191 AATAAAGTAG CTATTTTATT CTTAATAAAA TCCACAATTA TGTAATATTT TTTTACATCA 31549 .......... .......... .......... .......... .......... .......... 191 TAAATTTTAA AAATCTCTTT CTTAAATTTA CGCAAAATCA AAATACCTTA GAAGAAAAGA 31489 .......... .......... .......... .......... .......... .......... 191 TAAAATTTAT TTTTTCTACT TCCTCACACT TCACGTGGGC AAACCCAAGA ACCCACACGC 31429 .......... .......... .......... .......... .......... .......... 191 TGCACGTGAG AACTCTACGG GTCAGCACGT GTCCTCTTCT TTGACATATT GTTTGGTGAA 31369 .......... .......... .......... .......... .......... .......... 191 AAGATCAACT TGAGCGATTT ACAACAATTA TCTACTCCCA TAATTTAATT ATAAGATTCT 31309 .......... .......... .......... .......... .......... .......... 191 TATAGAAACT AATAAATTTT TAAATATCAT AATATTTTTA ATTTCATAGA AAATTCTTTA 31249 .......... .......... .......... .......... .......... .......... 191 AAAATAAAAT AAAATGTTTA AACTCATTCC TTGCAAATAT AAAAAATACA CCAATCGTAG 31189 .......... .......... .......... .......... .......... .......... 191 TTACCAATAA CATAAATAGG TGTATTACAT ATGAATTTAT ATAGAGTATG TAATGCTTAT 31129 .......... .......... .......... .......... .......... .......... 191 TTTTACCCTA TTACAACACC TTCAATGGTG ATGCCCAAAT AAGTTTGAAA TGACACAATG 31069 .......... .......... .......... .......... .......... .......... 191 AATGTGACCG TTTAATCTTT AATAAAAAAA ATTAAATTTT GGTTTTGAAT ATGAAGTTTT 31009 .......... .......... .......... .......... .......... .......... 191 TGATTTTTCG TGGTGTGAAT TGAAATATGA GATTCGAAGA GTTTTTTTTA AAAAATATTG 30949 .......... .......... .......... .......... .......... .......... 191 TTAAATTATA CCTCAAATTT AACTATATCC TCAAAGTTTA ATTTTATCAG GAAACATTAT 30889 .......... .......... .......... .......... .......... .......... 191 TCAAGTATTT AAAAGTGAAT AATTTTCATC CTTTTATTAG ATATTTTCAA AAAAATTAAG 30829 .......... .......... .......... .......... .......... .......... 191 GGATCTTACA AAACATGAAT AGTTCACGTG ATTATCAACA AAAGTTTTTC TGTCTAATTT 30769 .......... .......... .......... .......... .......... .......... 191 CATTACCTAG TGTAAGAAGT TCCTAAAAAA ATATTTAAAA TCTTAGACAC TACTGCTTAC 30709 .......... .......... .......... .......... .......... .......... 191 TATAATAAAA AAATATTTGA AAGGTGTGAT AATACACGAC CTGCTCTTTT TAACATTAGT 30649 .......... .......... .......... .......... .......... .......... 191 AACTGAAAGA AGCTGGACTT AAATATATTT ACCTTTTACA AAGCTAGATT GTATTTAGAT 30589 .......... .......... .......... .......... .......... .......... 191 CAATAAATGT TACAGTCAAT TTAATATAGA AGTGATTAAA ATATTGATTA TGTCTCGTAT 30529 .......... .......... .......... .......... .......... .......... 191 TTGAGTTTCA TTCTATAGTA TTAGAATAAA AAATCTTCAA TAAGCGCTGC TTCTAGCTAG 30469 .......... .......... .......... .......... .......... .......... 191 CATATCAACT GAGAAGAAAT ATATTTCAAC TAAAATATAT TTAATATCAA ATTACATGAA 30409 .......... .......... .......... .......... .......... .......... 191 AAAATAAATG ATAAAACTGT CAAATGAATT TCTTTTTCAT AATGCTGAAC TTAATTACTG 30349 .......... .......... .......... .......... .......... .......... 191 AAAAAGTTCA CGATAATATT CTTGATGTAT ACAGAATAAC ATATAATTAC GAAGAAATGG 30289 .......... .......... .......... .......... .......... .......... 191 CTCAATTTTT GAGAAATTTA ATCGTTGTCC AATAAATTCA AATAGAAGGA TGAAAATTTT 30229 .......... .......... .......... .......... .......... .......... 191 CCATTTTAAA TACTTAAAAA TGTTTTCTAC TGAATACTCT AAGGATATAA TTGAAGTTTG 30169 .......... .......... .......... .......... .......... .......... 191 GAATATAGTT AGAAAGATGT TCTTGAAAAA AAAAAGGGAA CATTATTCCT TAATAGGTAA 30109 .......... .......... .......... .......... .......... .......... 191 TGATGAGATG CATACAAATT TAAATTAATA GAATATATTA AGTCTTAATT ACCAAATAAT 30049 .......... .......... .......... .......... .......... .......... 191 TAAAAAAAAA TGACACATTC TTTAAATTAT TATTCTTAAC CACTATGAAC TGCTATTTCT 29989 .......... .......... .......... .......... .......... .......... 191 TTTTTAGCTT CTATGGGGAA GTAGGTGAGA AAAATTAGGA GTGTGATGAG AACTGTTGGG 29929 .......... .......... .......... .......... .......... .......... 191 ACTGAAAGAA GGGTTGTCAT TAATATATTT TTGTCTTGTT TTCTAAGCTA CATTACAAAA 29869 .......... .......... .......... .......... .......... .......... 191 TTTGACCAAA GCTTGCATCT CTAGGCACAT TATTTTTATT ACATTTAATA CTTTTCACCA 29809 .......... .......... .......... .......... .......... .......... 191 TTTTTTTCTA AAGAAATGAA ATTTAAGTCA TTCAGCGCCG CTTAAAGTTG ACTAATAGAT 29749 .......... .......... .......... .......... .......... .......... 191 AATACGATAG GTGTATAATA TACTTCACAT ATTCTATCCT TCATTTTTTT GCCTATCAAC 29689 .......... .......... .......... .......... .......... .......... 191 TTGATAGTCA AGCTATCTTA ATTCGGCTTC GACTTTGATT CACTTATAAT TCTATAAAAA 29629 .......... .......... .......... .......... .......... .......... 191 AATGCTTCTT TCATTCGTTT ACGTTTGTTT AGGTTATATG TAATTTAAAA GAGCAAACAG 29569 |||| | || |||| | | || || .......... .......... .......... ..GTTA-A-- TACTTTAGAT GGTCATTCA- 215 GCTAAACTTT GAGC 29555 |||| |||| | || ACTAATCTTT GTGC 229 hqPGS_C09HBa0278J12.1-_SGN-E379333+ (35688 35550) ******************************************************************************** EST sequence 207 +strand 680 n (File: SGN-E379427+) 1 ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 61 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 121 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 181 ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 241 AATAAGCAGC GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAGCGAAT 301 TATACAATTG CAGCGAAATA GGCCATCAAA TTATACAATT TAGGCCAGCG AATTATACAA 361 TTGTATATGT ATAGCGAATT ATACAGTTTT ATGTTTGCTA TGGAGCGCAA TTATGCAAAC 421 TTTGTTATAA CATACAAATA TGAATTTTTT ATTTGCTATA CGTGAAAGTT GCCCTTAATT 481 AAATGCTCCA CAGTCTATAC GAATATTTCC ATTCTTACCC GTCTTCACAC CAACTCGGCC 541 CAATTTAGTC ATCGCATTAA CAAATGCGGT TTCAAAAACT TTAGAATTAC TGGCCCACAA 601 ATTAACAGTA CCTTTAGACC TTTGGTCTGT GAACAAAACT TGATCTGATG TGAATAGGCC 661 CATTCCGTTT TGCAAGTTTT Predicted gene structure (within gDNA segment 36754 to 32835): Exon 1 35920 35657 ( 264 n); cDNA 1 269 ( 269 n); score: 0.852 MATCH C09HBa0278J12.1- SGN-E379427+ 0.852 264 0.388 C PGS_C09HBa0278J12.1-_SGN-E379427+ (35920 35657) Alignment (genomic DNA sequence = upper lines): ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGCGAATT ATACAATTGC 35861 |||||||||| ||| |||| ||||| |||| |||||||||| |||| ||||| ||| |||||| ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 60 AGTGAAATAC AATTTTCTCT AGCTTTATAC AACAGAAGTG TATATATTGT GTTTCTATTT 35801 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||| | ||| AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 120 TTGTATAAAG CGAG--AAAA GTATATATCT TCTTGCTATA CACTTATAAT TATGCAATAT 35743 |||||||||| |||| |||| |||||| | |||||| ||| |||||||||| |||||||||| TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 180 ACATATATTT TAATTCGATT CAACTGTATG CAAAACAAA- TTAT--ACA- ATTGCAGCAA 35687 ||||| |||| |||||||||| |||| ||||| |||| |||| |||| | | |||||||| | ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 240 AATAGGCCAG CGAATTATAC AATTGTATAT 35657 |||| | ||| ||| |||||| ||||| || AATAAG-CAG CGATTTATAC GATTGTGCAT 269 hqPGS_C09HBa0278J12.1-_SGN-E379427+ (35920 35657) ******************************************************************************** EST sequence 193 +strand 750 n (File: SGN-E379112+) 1 TGTGGGAATA TATATATATA TATATTCCGT TAATTAGACG AAATTGAGAA GCTGAAATCT 61 CACCTATAAC ATCAAGTATA CACGTTACCT ATGCCCTGGT TGTTTATAGC TGAATTTCAA 121 GCCCCTTTTC TTATTCTATT ATTACACCCC TAATGAAATG ATTAAGGAAC TTATTAAAGC 181 AAAACAACTA AATTCTTATT TTGCAATCTT TTCTTGTCAT TCACAAGCGA TAATTCTAAA 241 TCTTTTTCCT TCTCTCCATT TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT 301 AGTAATCTAA CTAAATGGAG TAGCTAGAGT TTGATTTAAT TGTGCTCCAT AGCAAACGTT 361 AGCTAAAGTT TGTCAGGCGT CTCCCTCCCA AAAATCTCGC TCGCCACTCT CCATTCTCGC 421 TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 481 AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 541 CAAATTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA GGCCAACGAA TTATACAATT 601 GTGAATTATA TAATTGCAGT GAAATACAAT TTTCTCTAAC TTTATACAAC AGAAGTGTAT 661 ATATTGTGNT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 721 CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 40559 to 34606): Exon 1 36836 36785 ( 52 n); cDNA 223 273 ( 51 n); score: 0.577 Intron 1 36784 36204 ( 581 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0.90) Exon 2 36203 35731 ( 473 n); cDNA 274 750 ( 477 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E379112+ 0.871 525 0.700 C PGS_C09HBa0278J12.1-_SGN-E379112+ (36836 36785,36203 35731) Alignment (genomic DNA sequence = upper lines): ACAACCTAAA AATTTAAGAA GTTAGTGATA CATTACGTAA TATACAATTT ATATATCATT 36777 |||| | | | | | ||| | || | | | | | | ||||||| | | ACAAGCGATA ATTCTAA-AT CTTTTTCCTT CTCTCCATTT TATACAAGCT CT........ 273 TTTAAAAAAA ACAATTAACA TTGAAAAATA ATTTGTATCT GATACATAAA ACAGAAAGTC 36717 .......... .......... .......... .......... .......... .......... 273 AATGAAATTG ATAAATACCT TCATCTTTGA ACTTTTAGAT GCGTTTACAA TCAATATCTC 36657 .......... .......... .......... .......... .......... .......... 273 CTCAAATCTT CGGCCAACAA CAATTCCATC AACTTTGTAA CCTTCATAAT TAATATCGAT 36597 .......... .......... .......... .......... .......... .......... 273 TACCCAAATT CCAGAATGCC GCAGCAGAAT TGAGATATTC ATCTTCAAAA CTTTTTTTTT 36537 .......... .......... .......... .......... .......... .......... 273 TAAATTCTTA ATATGCAGAT CAACCTTTAC AAGAATATTT TTGAATTATG AAGCTCATCT 36477 .......... .......... .......... .......... .......... .......... 273 GATTTAAAAT TTGAATTTAC TAATCAGTTA CACAATCTGA TGACCTTTAA TAACGTGATT 36417 .......... .......... .......... .......... .......... .......... 273 TCAGTTAATA ATAACAGAAA TCACGATAAT TAATCCTAAT TAATCGCAGC AGCTGTTAAA 36357 .......... .......... .......... .......... .......... .......... 273 ATGGGATGTA TCAGTACTTA TGTATCCCGC GCCAGAGTGA TGTATCCCGC TTCTTTGATT 36297 .......... .......... .......... .......... .......... .......... 273 TTTAAGGGAT TTTTAGTAAT TTCAATTCTT AAAGGGACAA ATGGTCATTT TGTATTTATA 36237 .......... .......... .......... .......... .......... .......... 273 ATATGTGGTT CCTATAATTT ATACTTTAAA AAATGGGAAA ATTGTATATA ATAGCAAACT 36177 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TGGGAAA ATTGTATATA ATAGCAAACT 300 AATAACCTAA ATTAAATGGA ATAACTAGGG TTTGATTTAA TTGTGCTCCA TAGTAAACAT 36117 | ||| || | | |||||||| || |||| | |||||||||| |||||||||| ||| |||| | AGTAATCT-A ACTAAATGGA GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT 359 TAGCTAAAAT TTGCCA-GCG TCTCTCCTCC AAAAATCTCG CTCGCCACTC TCCATTCTCG 36058 |||||||| | ||| || ||| |||| | || |||||||||| |||||||||| |||||||||| TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG CTCGCCACTC TCCATTCTCG 419 CTCGCCTCTC TCGCTTTATA CACAGAAGTG TAT-AATTTT ATTTCTGTTT TGTATAAAGC 35999 ||||||| || ||||| |||| |||||||||| ||| |||| | ||||| ||| |||||||||| CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT GTTTCTATTT TGTATAAAGC 479 GAGAGAAAAT TGTATATTCA CATGCAAAAA TGTATATCTT CGTGTTATAC ACTTAATTAT 35939 |||||||||| ||||||| || |||| ||||| | |||||||| |||||||||| |||||||||| GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT CGTGTTATAC ACTTAATTAT 539 ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACGA ATTATACAAT 35879 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATTACA AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACGA ATTATACAAT 599 TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG CTTTATACAA CAGAAGTGTA 35819 || ||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA 659 TATATTGTG- TTTCTATTTT TGTATAAAGC GAG--AAAAG TATATATCTT CTTGCTATAC 35762 ||||||||| ||| | |||| |||||||||| ||| |||| |||||| || ||||| |||| TATATTGTGN TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 719 ACTTATAATT ATGCAATATA CATATATTTT A 35731 |||||||||| |||||||||| |||| ||||| | ACTTATAATT ATGCAATATA CATACATTTT A 750 hqPGS_C09HBa0278J12.1-_SGN-E379112+ (36203 35731) ******************************************************************************** EST sequence 115 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 39199 to 34598): Exon 1 36836 36785 ( 52 n); cDNA 86 136 ( 51 n); score: 0.577 Intron 1 36784 36204 ( 581 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0.90) Exon 2 36203 35731 ( 473 n); cDNA 137 612 ( 476 n); score: 0.909 MATCH C09HBa0278J12.1- SGN-E394609- 0.876 525 0.858 C PGS_C09HBa0278J12.1-_SGN-E394609- (36836 36785,36203 35731) Alignment (genomic DNA sequence = upper lines): ACAACCTAAA AATTTAAGAA GTTAGTGATA CATTACGTAA TATACAATTT ATATATCATT 36777 |||| | | | | | ||| | || | | | | | | ||||||| | | ACAAGCGATA ATTCTAA-AT CTTTTTCCTT CTCTCCATTT TATACAAGCT CT........ 136 TTTAAAAAAA ACAATTAACA TTGAAAAATA ATTTGTATCT GATACATAAA ACAGAAAGTC 36717 .......... .......... .......... .......... .......... .......... 136 AATGAAATTG ATAAATACCT TCATCTTTGA ACTTTTAGAT GCGTTTACAA TCAATATCTC 36657 .......... .......... .......... .......... .......... .......... 136 CTCAAATCTT CGGCCAACAA CAATTCCATC AACTTTGTAA CCTTCATAAT TAATATCGAT 36597 .......... .......... .......... .......... .......... .......... 136 TACCCAAATT CCAGAATGCC GCAGCAGAAT TGAGATATTC ATCTTCAAAA CTTTTTTTTT 36537 .......... .......... .......... .......... .......... .......... 136 TAAATTCTTA ATATGCAGAT CAACCTTTAC AAGAATATTT TTGAATTATG AAGCTCATCT 36477 .......... .......... .......... .......... .......... .......... 136 GATTTAAAAT TTGAATTTAC TAATCAGTTA CACAATCTGA TGACCTTTAA TAACGTGATT 36417 .......... .......... .......... .......... .......... .......... 136 TCAGTTAATA ATAACAGAAA TCACGATAAT TAATCCTAAT TAATCGCAGC AGCTGTTAAA 36357 .......... .......... .......... .......... .......... .......... 136 ATGGGATGTA TCAGTACTTA TGTATCCCGC GCCAGAGTGA TGTATCCCGC TTCTTTGATT 36297 .......... .......... .......... .......... .......... .......... 136 TTTAAGGGAT TTTTAGTAAT TTCAATTCTT AAAGGGACAA ATGGTCATTT TGTATTTATA 36237 .......... .......... .......... .......... .......... .......... 136 ATATGTGGTT CCTATAATTT ATACTTTAAA AAATGGGAAA ATTGTATATA ATAGCAAACT 36177 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TGGGAAA ATTGTATATA ATAGCAAACT 163 AATAACCTAA ATTAAATGGA ATAACTAGGG TTTGATTTAA TTGTGCTCCA TAGTAAACAT 36117 | ||| ||| | |||||||| || |||| | |||||||||| |||||||||| ||| |||| | AGTAATCTA- ACTAAATGGA GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT 222 TAGCTAAAAT TTGCCAG-CG TCTCTCCTCC AAAAATCTCG CTCGCCACTC TCCATTCTCG 36058 |||||||| | ||| ||| || |||| | || |||||||||| |||||||||| |||||||||| TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG CTCGCCACTC TCCATTCTCG 282 CTCGCCTCTC TCGCTTTATA CACAGAAGTG TAT-AATTTT ATTTCTGTTT TGTATAAAGC 35999 ||||||| || ||||| |||| |||||||||| ||| |||| | ||||| ||| |||||||||| CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT GTTTCTATTT TGTATAAAGC 342 GAGAGAAAAT TGTATATTCA CATGCAAAAA TGTATATCTT CGTGTTATAC ACTTAATTAT 35939 |||||||||| ||||||| || |||| ||||| | |||||||| |||||||||| |||||||||| GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT CGTGTTATAC ACTTAATTAT 402 ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACGA ATTATACAAT 35879 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATTACA AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACGA ATTATACAAT 462 TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG CTTTATACAA CAGAAGTGTA 35819 || ||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA 522 TATATTGTGT TTCTATTTTT GTATAAAGCG AG--AAAAGT ATATATCTTC TTGCTATACA 35761 |||||||||| || | ||||| |||||||||| || |||| |||||| ||| |||| ||||| TATATTGTGT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 582 CTTATAATTA TGCAATATAC ATATATTTTA 35731 |||||||||| |||||||||| ||| |||||| CTTATAATTA TGCAATATAC ATACATTTTA 612 hqPGS_C09HBa0278J12.1-_SGN-E394609- (36203 35731) ******************************************************************************** EST sequence 93 -strand 530 n (File: SGN-E393065-) 1 TTCACAAGCG ATAATTCTAA ATCTTTTTCC TTCTCTCCAT TTTATACAAG CTATGGGACA 61 AATTGTATAT AATAGCAAAC TAGTAATCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 121 TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 181 CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 241 GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 301 CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 361 AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 421 CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 481 ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 38811 to 34427): Exon 1 36198 35731 ( 468 n); cDNA 60 530 ( 471 n); score: 0.855 MATCH C09HBa0278J12.1- SGN-E393065- 0.855 468 0.883 C PGS_C09HBa0278J12.1-_SGN-E393065- (36198 35731) Alignment (genomic DNA sequence = upper lines): AAATTGTATA TAATAGCAAA CTAATAACCT AAATTAAATG GAATAACTAG GGTTTGATTT 36139 |||||||||| |||||||||| ||| ||| || || | ||||| || || ||| ||| ||| | AAATTGTATA TAATAGCAAA CTAGTAATCT AACT-AAATG GAGTAGATAG AGTTAGATCT 118 AATTGTGCTC CATAGTAAAC ATTAGCTAAA ATTTGCCA-G CGTCTCTCCT CCAAAAATCT 36080 |||||||| ||| | |||| ||||||||| || | || | ||||| | |||||||||| TATTGTGCTT CATGGCAAAC GTTAGCTAAA GTTGGTCAGG CGTCTGCCTC CCAAAAATCT 178 CGCTCGCCAC TCTCCATTCT CGCTCGCCTC TCTCGCTTTA TACACAGAAG TGTATA-ATT 36021 |||| |||| | |||||| | |||| || | ||||| | || |||||||||| |||||| ||| CGCTGGCCAT TTTCCATTAT CGCTGGCATA TCTCGTTATA TACACAGAAG TGTATAGATT 238 TTATTTCTGT TTTGTATAAA GCGAGAGAAA ATTGTATATT CACATGCAAA AATGTATATC 35961 | ||| | | |||||||||| |||||||||| ||||||||| |||||| || ||| |||||| ATGTTTATAT TTTGTATAAA GCGAGAGAAA ATTGTATATA CACATGTGAA AATATATATC 298 TTCGTGTTAT ACACTTAATT ATACAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA 35901 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| | |||| ||| TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT ACTTCAAATA TGGCAGTGAA 358 AAAGGCCAAC GAATTATACA ATTGCGAATT ATACAATTGC AGTGAAATAC AATTTTCTCT 35841 ||||||||| ||||||| || |||| ||||| ||| |||||| |||||||||| |||||| ||| AAAGGCCAAG GAATTATGCA ATTGTGAATT ATATAATTGC AGTGAAATAC AATTTTGTCT 418 AGCTTTATAC AACAGAAGTG TATATATTGT GTTTCTATTT TTGTATAAAG CGAG--AAAA 35783 | |||||||| |||||||||| |||||||||| |||| | ||| | |||||||| |||| |||| AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT TAGTATAAAG CGAGACAAAA 478 GTATATATCT TCTTGCTATA CACTTATAAT TATGCAATAT ACATATATTT TA 35731 |||||| | |||||| || | |||||||| |||||||||| ||||| |||| || ACATATATAT TCTTGCCATG CGCTTATAAT TATGCAATAT ACATACATTT TA 530 hqPGS_C09HBa0278J12.1-_SGN-E393065- (36198 35731) ******************************************************************************** EST sequence 96 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 37041 to 34598): Exon 1 36052 35731 ( 322 n); cDNA 1 325 ( 325 n); score: 0.899 MATCH C09HBa0278J12.1- SGN-E393076- 0.899 322 0.991 C PGS_C09HBa0278J12.1-_SGN-E393076- (36052 35731) Alignment (genomic DNA sequence = upper lines): CTCTCTCGCT TTATACACAG AAGTGTATAA TTT-TATTTC TGTTTTGTAT AAAGCGAGAG 35994 || ||||||| |||||||| || |||| || | ||| | |||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATTCACATGC AAAAATGTAT ATCTTCGTGT TATACACTTA ATTATACAAT 35934 |||||||||| || |||||| |||||| ||| |||||||||| |||||||||| ||||||||| AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGCGA 35874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 180 ATTATACAAT TGCAGTGAAA TACAATTTTC TCTAGCTTTA TACAACAGAA GTGTATATAT 35814 |||||| ||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 240 TGTGTTTCTA TTTTTGTATA AAGCGAG--A AAAGTATATA TCTTCTTGCT ATACACTTAT 35756 ||||||| | |||||||||| ||||||| | ||| ||||| | ||||||| |||||||||| TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 300 AATTATGCAA TATACATATA TTTTA 35731 |||||||||| |||||||| | ||||| AATTATGCAA TATACATACA TTTTA 325 hqPGS_C09HBa0278J12.1-_SGN-E393076- (36052 35731) ******************************************************************************** EST sequence 94 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 36871 to 34598): Exon 1 36032 35731 ( 302 n); cDNA 5 308 ( 304 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E393075- 0.904 302 0.981 C PGS_C09HBa0278J12.1-_SGN-E393075- (36032 35731) Alignment (genomic DNA sequence = upper lines): AAGTGTATAA TTTTATTTCT GTTTTGTATA AAGCGAGAGA AAATTGTATA TTCACATGCA 35973 || | | | | ||||| ||||||||| |||||||||| |||||||||| | |||||| | AAAAAAAAAC CTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 64 AAAATGTATA TCTTCGTGTT ATACACTTAA TTATACAATT TACAAACATT TTACTTCAAA 35913 ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 124 TATTGCAGAG AAAAAGGCCA ACGAATTATA CAATTGCGAA TTATACAATT GCAGTGAAAT 35853 |||||||||| |||||||||| |||||||||| |||||| ||| ||||| |||| |||||||||| TATTGCAGAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT GCAGTGAAAT 184 ACAATTTTCT CTAGCTTTAT ACAACAGAAG TGTATATATT GTGTTTCTAT TTTTGTATAA 35793 |||||||||| ||| |||||| |||||||||| |||||||||| |||||| | | |||||||||| ACAATTTTCT CTAACTTTAT ACAACAGAAG TGTATATATT GTGTTTTTGT TTTTGTATAA 244 AGCGAG--AA AAGTATATAT CTTCTTGCTA TACACTTATA ATTATGCAAT ATACATATAT 35735 |||||| || || |||||| ||||||| | |||||||||| |||||||||| ||||||| || AGCGAGACAA AAACATATAT ATTCTTGCCA TACACTTATA ATTATGCAAT ATACATACAT 304 TTTA 35731 |||| TTTA 308 hqPGS_C09HBa0278J12.1-_SGN-E393075- (36032 35731) ******************************************************************************** EST sequence 97 -strand 153 n (File: SGN-E392727-) 1 AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 61 GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 121 ACACTTATAA TTATGCAATA TACATACATA TTA Predicted gene structure (within gDNA segment 36626 to 34427): Exon 1 35881 35731 ( 151 n); cDNA 1 153 ( 153 n); score: 0.881 MATCH C09HBa0278J12.1- SGN-E392727- 0.881 151 0.987 C PGS_C09HBa0278J12.1-_SGN-E392727- (35881 35731) Alignment (genomic DNA sequence = upper lines): AATTGCGAAT TATACAATTG CAGTGAAATA CAATTTTCTC TAGCTTTATA CAACAGAAGT 35822 ||||| |||| |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 60 GTATATATTG TGTTTCTATT TTTGTATAAA GCGAGA-AAA -GTATATATC TTCTTGCTAT 35764 |||||||||| ||||| | | |||||||||| ||| || ||| |||||| ||||||| || GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 120 ACACTTATAA TTATGCAATA TACATATATT TTA 35731 |||||||||| |||||||||| |||||| || ||| ACACTTATAA TTATGCAATA TACATACATA TTA 153 hqPGS_C09HBa0278J12.1-_SGN-E392727- (35881 35731) ******************************************************************************** EST sequence 27 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 38789 to 34608): Exon 1 36203 35732 ( 472 n); cDNA 96 570 ( 475 n); score: 0.909 MATCH C09HBa0278J12.1- SGN-E379618- 0.909 472 0.828 C PGS_C09HBa0278J12.1-_SGN-E379618- (36203 35732) Alignment (genomic DNA sequence = upper lines): TGGGAAAATT GTATATAATA GCAAACTAAT AACCTAAATT AAATGGAATA ACTAGGGTTT 36144 |||||||||| |||||||||| |||||||| | || || || | ||||||| || |||| |||| TGGGAAAATT GTATATAATA GCAAACTAGT AATCT-AACT AAATGGAGTA GCTAGAGTTT 154 GATTTAATTG TGCTCCATAG TAAACATTAG CTAAAATTTG CCA-GCGTCT CTCCTCCAAA 36085 |||||||||| |||||||||| |||| |||| ||||| |||| || |||||| | | ||||| GATTTAATTG TGCTCCATAG CAAACGTTAG CTAAAGTTTG TCAGGCGTCT CCCTCCCAAA 214 AATCTCGCTC GCCACTCTCC ATTCTCGCTC GCCTCTCTCG CTTTATACAC AGAAGTGTAT 36025 |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| |||||||||| AATCTCGCTC GCCACTCTCC ATTCTCGCTC GCCTATCTCG CTATATACAC AGAAGTGTAT 274 -AATTTTATT TCTGTTTTGT ATAAAGCGAG AGAAAATTGT ATATTCACAT GCAAAAATGT 35966 |||| | || ||| |||||| |||||||||| |||||||||| |||| ||||| | |||||| | AAATTCTGTT TCTATTTTGT ATAAAGCGAG AGAAAATTGT ATATACACAT GTAAAAATAT 334 ATATCTTCGT GTTATACACT TAATTATACA ATTTACAAAC ATTTTACTTC AAATATTGCA 35906 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATATCTTCGT GTTATACACT TAATTATACA AATTACAAAC ATTTTACTTC AAATATTGCA 394 GAGAAAAAGG CCAACGAATT ATACAATTGC GAATTATACA ATTGCAGTGA AATACAATTT 35846 |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| GAGAAAAAGG CCAACGAATT ATACAATTGT GAATTATATA ATTGCAGTGA AATACAATTT 454 TCTCTAGCTT TATACAACAG AAGTGTATAT ATTGTGTTTC TATTTTTGTA TAAAGCGAG- 35787 |||||| ||| |||||||||| |||||||||| ||||||||| | |||||||| ||||||||| TCTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT TGTTTTTGTA TAAAGCGAGA 514 -AAAAGTATA TATCTTCTTG CTATACACTT ATAATTATGC AATATACATA TATTTT 35732 |||| ||| ||| |||||| | |||||||| |||||||||| |||||||||| ||||| CAAAAACATA TATATTCTTG CCATACACTT ATAATTATGC AATATACATA CATTTT 570 hqPGS_C09HBa0278J12.1-_SGN-E379618- (36203 35732) ******************************************************************************** EST sequence 152 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 37589 to 34608): Exon 1 36178 35732 ( 447 n); cDNA 1 450 ( 450 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E200845- 0.904 447 0.993 C PGS_C09HBa0278J12.1-_SGN-E200845- (36178 35732) Alignment (genomic DNA sequence = upper lines): CTAATAACCT AAATTAAATG GAATAACTAG GGTTTGATTT AATTGTGCTC CATAGTAAAC 36119 ||| ||| || | | |||||| || || |||| ||||||||| |||||||||| ||||| |||| CTAGTAATCT A-ACTAAATG GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC 59 ATTAGCTAAA ATTTGCCA-G CGTCTCTCCT CCAAAAATCT CGCTCGCCAC TCTCCATTCT 36060 ||||||||| |||| || | |||||| | |||||||||| |||||||||| |||||||||| GTTAGCTAAA GTTTGTCAGG CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT 119 CGCTCGCCTC TCTCGCTTTA TACACAGAAG TGTAT-AATT TTATTTCTGT TTTGTATAAA 36001 ||||||||| ||||||| || |||||||||| ||||| |||| | ||||| | |||||||||| CGCTCGCCTA TCTCGCTATA TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA 179 GCGAGAGAAA ATTGTATATT CACATGCAAA AATGTATATC TTCGTGTTAT ACACTTAATT 35941 |||||||||| ||||||||| |||||| ||| ||| |||||| |||||||||| |||||||||| GCGAGAGAAA ATTGTATATA CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT 239 ATACAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA 35881 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACAAATTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA 299 ATTGCGAATT ATACAATTGC AGTGAAATAC AATTTTCTCT AGCTTTATAC AACAGAAGTG 35821 |||| ||||| ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| ATTGTGAATT ATATAATTGC AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG 359 TATATATTGT GTTTCTATTT TTGTATAAAG CGAG--AAAA GTATATATCT TCTTGCTATA 35763 |||||||||| |||| | ||| |||||||||| |||| |||| |||||| | |||||| ||| TATATATTGT GTTTTTGTTT TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA 419 CACTTATAAT TATGCAATAT ACATATATTT T 35732 |||||||||| |||||||||| ||||| |||| | CACTTATAAT TATGCAATAT ACATACATTT T 450 hqPGS_C09HBa0278J12.1-_SGN-E200845- (36178 35732) ******************************************************************************** EST sequence 140 -strand 461 n (File: SGN-E315035-) 1 TTTAATTATG ATGTATCAGT TAATATGTAT CCCGTGCCAG AGTGATGTAT CCCTTGCCAG 61 AGTGATGTAT CCCTACTAAT CCGTTACACA ATCTGATGAC CATTAATTAC GTGATTTCAG 121 TTAAGAATAA CAGAAATCAC GTTAATTAAC CCTAATTAAT CGCAACAGCC TTTAACTTTG 181 ATGTATCAGT TCTTATGTAT CCCGTGCCAG ACTGATGTAT CCCGGTTCTT TGCTTTTTAA 241 GGGATTTTTA GTAATTTCAA TTCTTAAAGG GATAAATGGT CATTTTGTAT TTATAATATG 301 TGGTTCCTAT AATTTATACT AAAATAAATC TGGGATTCTT GGCCCAAAAT CTTCAACTTC 361 TTGGAGTTTT GAGTCCTTCC GACTTTAGGA CATGTACGCC TTTTTCGGGG TCAACTCGAA 421 GGTAGCAATT TGAGTTTATG ACGAACACGG ACAAATTCAC A Predicted gene structure (within gDNA segment 37880 to 34202): Exon 1 36449 36203 ( 247 n); cDNA 84 329 ( 246 n); score: 0.915 MATCH C09HBa0278J12.1- SGN-E315035- 0.915 247 0.536 C PGS_C09HBa0278J12.1-_SGN-E315035- (36449 36203) Alignment (genomic DNA sequence = upper lines): TTACACAATC TGATGACCTT TAATAACGTG ATTTCAGTTA ATAATAACAG AAATCACGAT 36390 |||||||||| |||||||| | |||| ||||| |||||||||| | |||||||| |||||||| | TTACACAATC TGATGACCAT TAATTACGTG ATTTCAGTTA AGAATAACAG AAATCACGTT 143 AATTAATCCT AATTAATCGC AGCAGCTGTT AAAATGGGAT GTATCAGTAC TTATGTATCC 36330 |||||| ||| |||||||||| | |||| || || | ||| |||||||| | |||||||||| AATTAACCCT AATTAATCGC AACAGC-CTT TAACTTTGAT GTATCAGTTC TTATGTATCC 202 CGCGCCAGAG TGATGTATCC CGCTTCTTTG ATTTTTAAGG GATTTTTAGT AATTTCAATT 36270 || |||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| CGTGCCAGAC TGATGTATCC CGGTTCTTTG CTTTTTAAGG GATTTTTAGT AATTTCAATT 262 CTTAAAGGGA CAAATGGTCA TTTTGTATTT ATAATATGTG GTTCCTATAA TTTATACTTT 36210 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTAAAGGGA TAAATGGTCA TTTTGTATTT ATAATATGTG GTTCCTATAA TTTATACTAA 322 AAAAAAT 36203 || |||| AATAAAT 329 hqPGS_C09HBa0278J12.1-_SGN-E315035- (36449 36203) ******************************************************************************** EST sequence 172 +strand 729 n (File: SGN-E550212+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAACTCG 721 GGGGGGGGC Predicted gene structure (within gDNA segment 43201 to 38540): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41942 ( 246 n); cDNA 311 555 ( 245 n); score: 0.809 Intron 2 41941 41333 ( 609 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 3 41332 41304 ( 29 n); cDNA 556 583 ( 28 n); score: 0.724 Intron 3 41303 40690 ( 614 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 40689 40624 ( 66 n); cDNA 584 647 ( 64 n); score: 0.659 PPA cDNA 699 716 MATCH C09HBa0278J12.1- SGN-E550212+ 0.821 653 0.896 C PGS_C09HBa0278J12.1-_SGN-E550212+ (42601 42290,42187 41942,41332 41304,40689 40624) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACACAAGCT CCAAAAATCT TTAGGGTTAT TTTAATAATA GATAAACATG TGCATCAATT 41885 ||| TAC....... .......... .......... .......... .......... .......... 555 GTGTATTTAA AAAATCTCAG ATGATGATAT GGAACTTTCA TACCATAATT TTTGGAGAAT 41825 .......... .......... .......... .......... .......... .......... 555 ACCAAATTTC ATCTCATGAC ATGAGATCAA CATGAAATCG CATGTTCAAA CGCTGATTAC 41765 .......... .......... .......... .......... .......... .......... 555 ATCTCACAAT TCTATATCGT GATATGATAT GACCAAACGC CTACTAAGTC AAGATTTTTT 41705 .......... .......... .......... .......... .......... .......... 555 TTTATATAAA TATAATTTCT TTGCTATTGA TTATTGATTA ATCCATTAAA AATGAATTAT 41645 .......... .......... .......... .......... .......... .......... 555 CCAATAAAAA ATCGAAGACT CTTATCAAGA TTTTGAACTA ATAATCCATT AGCAACAAAT 41585 .......... .......... .......... .......... .......... .......... 555 TAACAACTTT ATTTAAATAA TCAACTTTGC GTCAATTATA AATAATCCTA AGATAAATAC 41525 .......... .......... .......... .......... .......... .......... 555 ATATTTTAAA CTCACTCACA AAAAGTAAAT CACGTTAAGA TACAATAGTT CGCAACAAAT 41465 .......... .......... .......... .......... .......... .......... 555 AGAAGAATAC CGTGTAAACC CCTACTAATA GAAAATGGAC AAGAATATCA AAAAATTGAA 41405 .......... .......... .......... .......... .......... .......... 555 GTGATTTTAA TTTTCTCGTT TGATGTTAGT TTTTTCCTTC AAAAGTTTGG AATTGTCAAT 41345 .......... .......... .......... .......... .......... .......... 555 AGTACCTTTA CTATTTTTTT ACTTATCTAC TATACTATTA TATAAATGTA AATAAGTATA 41285 |||| | | ||| |||| | | ||||| | .......... ..ATTTATGT TCTT-CCTAC TTAAATATTA T......... .......... 583 AAACTAGGCG TCAACATGTC TGCTTCAATT TTATTATAAT TACTATTTGA CTTACTGGCC 41225 .......... .......... .......... .......... .......... .......... 583 AAAGTTAGAT ATTCCATGTA CAATGTCCCA GTTTCAAACC TGGCCAACAT TTTTTTTCAT 41165 .......... .......... .......... .......... .......... .......... 583 CTCATTTTTA ATGCCTTTAG TAGTTTTTTT AAATAATTTA TTTCATTAAT TAAATACTAA 41105 .......... .......... .......... .......... .......... .......... 583 TAATCTATAT TATTACTTAT TTATGTTTTA GTTATTTCAA TTTATTTCTT TTAGACTCAA 41045 .......... .......... .......... .......... .......... .......... 583 ATTATAGACA ATATAATTAT TTTATTATAT TAATATGCAA AAAGCTACAA TTTATAGTTA 40985 .......... .......... .......... .......... .......... .......... 583 TTTTTTGTAT AATTTTTGAG TATCTAATTT TTTTGTTAAA AATGTATAAC TATATTTAAT 40925 .......... .......... .......... .......... .......... .......... 583 TTAATTTAAC TTATAAAATT AATTAAACTG ACTTTTTTAA AAAGCGTAAC ATGACAATTA 40865 .......... .......... .......... .......... .......... .......... 583 AAAGTGAATG AAAGAAGTAG TAAATAGTAC AATTATTTGG GGGCCACTTC AATTAGTATT 40805 .......... .......... .......... .......... .......... .......... 583 TCCGATCATA AATTTTTTTA AATTACATTC TTATGAATGT CAATCTTTAT TTGCTAATAA 40745 .......... .......... .......... .......... .......... .......... 583 AAATTTAGTC AACTTTCAAA ATTCTATTGT GCCTCATAAA ATGGAATTTA AAATATATTA 40685 ||||| .......... .......... .......... .......... .......... .....TATTA 588 TTTGAAGATG ACCTTAAAAT TACTAAGAAT CACAGTAATT ATCAA-CATG AAATATTTAA 40626 ||| | ||| ||| | || | |||| || || || |||| |||| || || | || TTTTACGAT- -TTATAACAC TA-TTAGAAA CAAAGATTTT CTCAACCATG AATTAATGAA 645 AA 40624 || AA 647 hqPGS_C09HBa0278J12.1-_SGN-E550212+ (42601 42290,42187 41942,41332 41304) ******************************************************************************** EST sequence 2 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 47471 to 39810): Exon 1 43531 43084 ( 448 n); cDNA 1 458 ( 458 n); score: 0.788 Intron 1 43083 43047 ( 37 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.94) Exon 2 43046 42863 ( 184 n); cDNA 459 630 ( 172 n); score: 0.772 Intron 2 42862 41950 ( 913 n); Pd: 0.000 (s: 0.80), Pa: 0.552 (s: 0) Exon 3 41949 41920 ( 30 n); cDNA 631 660 ( 30 n); score: 0.500 Intron 3 41919 41373 ( 547 n); Pd: 0.702 (s: 0), Pa: 0.000 (s: 0) Exon 4 41372 41344 ( 29 n); cDNA 661 686 ( 26 n); score: 0.759 MATCH C09HBa0278J12.1- SGN-E349977- 0.783 691 0.893 C PGS_C09HBa0278J12.1-_SGN-E349977- (43531 43084,43046 42863,41949 41920,41372 41344) Alignment (genomic DNA sequence = upper lines): AGTAGGTATC ATCGGCCAAC TCAAAATAGA AAACAGTATA TACCAAGTAA TATCATAAAA 43472 ||||| |||| ||| || ||| ||||||||| |||| |||| || ||| ||| || | ||| AGTAGATATC ATC-GCTAAC TCAAAATAGG GAACAATATA TATCAA-TAA TAATGT-AAA 57 TCAACTATGA TACTCAACAT GTAGCATTTA CAATTACCAT AACCCTTGGT TA-CAACACC 43413 ||||||| | |||||| ||| |||||| | ||||| | | | | || | | | | TCAACTACAA TACTCATCAT GTAGCAATAG CAATT-TCTT NATCATTAAC AATTACCGTC 116 AAGCTCGTCA ATGAGGACTC ACGCCTCCTC ATCATACTCA TTTGGGATTT AGGTTCATTA 43353 ||| || |||||||||| | ||||| | |||||||| ||||||| || | |||||||| AAGTTCACAC ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATT AAGTTCATTA 176 GATTGAGTAT ATT-AACATC TTTCAGGATT CATTATCTTT ATTTCTCTCG TGTCGGTACG 43294 |||||||||| ||| | ||| ||||| |||| |||||||||| || |||| | |||||||||| GATTGAGTAT ATTCATTATC TTTCAAGATT CATTATCTTT CTTCCTCTTG TGTCGGTACG 236 TGACACTCCG CTCCTCATAT ACTATCCTGG TGTCGGAACG TGACACTCCG ATCCTCATA- 43235 |||||||||| |||||| | ||||||||| || ||||||| || ||||||| ||||||||| TGACACTCCG CTCCTCTATT TCTATCCTGG TGCCGGAACG TGGCACTCCG ATCCTCATAT 296 T-A--CTATC CTGGTACCGG AACGTGGCAC GCAAT-C-CA TATTCTATCC TGGTGTCGGA 43180 | | ||||| |||||||||| |||||||||| | || | || |||||||||| |||||||||| TCATTCTATC CTGGTACCGG AACGTGGCAC CCGATCCTCA TATTCTATCC TGGTGTCGGA 356 ACGTGACACT CCGATCCTCA TA-T-A--CT ATCCTGGTAC CGGAACGTGG CACCCGAT-C 43125 |||| ||||| |||||||||| || | | || |||||||||| |||||||||| |||||||| | ACGTAACACT CCGATCCTCA TATTCATTCT ATCCTGGTAC CGGAACGTGG CACCCGATCC 416 -CATATTCTA TTCTGGTGTC GGAACGTGAC ACTCCGATCC TCATATACTA TCATGGTACC 43066 ||||||||| | |||||||| |||||||||| |||||||||| || TCATATTCTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TC........ .......... 458 GGAACGTGGC ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACACT CCGATCCTCA 43006 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TATTCTATCC TGGTGTCGGA ACGTGACACT CCGATCCTCA 499 TATACTATCC TGGTACCGGA ACGTGGTACC CGATCCCCTA ATCTCCTTCT ATCAATTCAT 42946 ||| | || | | | | || || | || | | || ||| || | | ||||||| TATTC-ATTC T-ATCCTGGT AC-CGAAACG TG-GCACCCG ATC-CC--C- -T-AATTCAT 549 CAAGCCTTCT TTCTTACCAA AGACATCATC AATCTCATTA TTTTAGTTCA TTACGCCTTC 42886 ||||||||| |||| | | || ||||||| | |||||||| | || || | | | |||||| CAAGCCTTC- TTCTACACTA AGGCATCATC ATTCTCATTA -TATAATTTA TCAAGCCTTC 607 TTTTATACCA AGGCCTCATC ATTAACAAAG AGATTAGGGT TTTTCAAGAT TTGGGATTCA 42826 | | |||| | |||||||||| | | TCTCATACTA AGGCCTCATC AAT....... .......... .......... .......... 630 ATAACTTCAT CATGCTTATA TAATCACAAT TATATAATTA CATTCATGCA AGCATACAAT 42766 .......... .......... .......... .......... .......... .......... 630 TAAGCACATA GCAGGGTTTA CAACATTATC AATACATATC ATTCGCTATT AAGAGTTTAC 42706 .......... .......... .......... .......... .......... .......... 630 TACGAATATC GTAAGAGAAA CCATAACCTA CCTCCACCGA AGACTAATGA TCAAGCAAGA 42646 .......... .......... .......... .......... .......... .......... 630 ATTTTCCAAA GCCTTGTGTT TTTCCTCTTC GTTCGTCTCT CTCTATCGAT TCTCCTTCTC 42586 .......... .......... .......... .......... .......... .......... 630 TCTCTTTCTG TTCTTTTCTT TTTCTTATTC AAACCCTCTT TCTTTTACCC TAATTAGCAT 42526 .......... .......... .......... .......... .......... .......... 630 ATAATTAAGA ATAAAATGTG GCAATAATAA CCCATTAATT AACTTAAGGT TACCTCTTTT 42466 .......... .......... .......... .......... .......... .......... 630 AACCCCCAAG AAATTTAGTC ATTAATATAA ACCCACGAAA TATATAATTA TAGCAGGAAT 42406 .......... .......... .......... .......... .......... .......... 630 AGTCCAAAAC GCCCCTTTAA AACTTAACCA GAAATCTGAC TCCGACTGGG ATTACGCAAC 42346 .......... .......... .......... .......... .......... .......... 630 CTGTGACGGC CCGTCGCGCC TGCGACGGTT CGTCATGCAG GTTCGTCAGA GACTCGATTT 42286 .......... .......... .......... .......... .......... .......... 630 CCTTAAGGAG TCTGTGACGG CCCGTCGTAC CTACGACGGT CCGTCCTGCA CTTCCGTCAC 42226 .......... .......... .......... .......... .......... .......... 630 GACGTTCAGA GAATCGTTCC CTGTACCAAA TTCTCAAGAG TTGAAGTGTT TTGAAACGGT 42166 .......... .......... .......... .......... .......... .......... 630 GGATCACGAC GGTTCGTCGT GCCTGTGACG GTCCGTCCTG CAGGTCCGTC ACAGAGTTCA 42106 .......... .......... .......... .......... .......... .......... 630 GAGAGTCGAT TTTAGCACCC AAATTTCAGA ATTTCTAAGT GTTTTGGGAC GAGACACCCT 42046 .......... .......... .......... .......... .......... .......... 630 CGACGGTCCG TCGTGCCCAT GACGTTCCGT CGTGGGTTCC GTCGTCTCAG CCTATTTTTC 41986 .......... .......... .......... .......... .......... .......... 630 CAGAAATAAA ATCTGCTGCT CAAAATGACT AAACAGGTCG TTACACAAGC TCCAAAAATC 41926 | ||| | || | || .......... .......... .......... ......CTTA TTATATAATA TATCAAGTGA 654 TTTAGGGTTA TTTTAATAAT AGATAAACAT GTGCATCAAT TGTGTATTTA AAAAATCTCA 41866 ||||| ATTAGG.... .......... .......... .......... .......... .......... 660 GATGATGATA TGGAACTTTC ATACCATAAT TTTTGGAGAA TACCAAATTT CATCTCATGA 41806 .......... .......... .......... .......... .......... .......... 660 CATGAGATCA ACATGAAATC GCATGTTCAA ACGCTGATTA CATCTCACAA TTCTATATCG 41746 .......... .......... .......... .......... .......... .......... 660 TGATATGATA TGACCAAACG CCTACTAAGT CAAGATTTTT TTTTATATAA ATATAATTTC 41686 .......... .......... .......... .......... .......... .......... 660 TTTGCTATTG ATTATTGATT AATCCATTAA AAATGAATTA TCCAATAAAA AATCGAAGAC 41626 .......... .......... .......... .......... .......... .......... 660 TCTTATCAAG ATTTTGAACT AATAATCCAT TAGCAACAAA TTAACAACTT TATTTAAATA 41566 .......... .......... .......... .......... .......... .......... 660 ATCAACTTTG CGTCAATTAT AAATAATCCT AAGATAAATA CATATTTTAA ACTCACTCAC 41506 .......... .......... .......... .......... .......... .......... 660 AAAAAGTAAA TCACGTTAAG ATACAATAGT TCGCAACAAA TAGAAGAATA CCGTGTAAAC 41446 .......... .......... .......... .......... .......... .......... 660 CCCTACTAAT AGAAAATGGA CAAGAATATC AAAAAATTGA AGTGATTTTA ATTTTCTCGT 41386 .......... .......... .......... .......... .......... .......... 660 TTGATGTTAG TTTTTTCCTT CAAAAGTTTG GAATTGTCAA TA 41344 ||| || ||| | |||| | | | |||| || .......... ...GTTCTTT CAAGA-TTTG GGA-T-TCAA TA 686 hqPGS_C09HBa0278J12.1-_SGN-E349977- (43531 43084,43046 42863,41949 41920,41372 41344) ******************************************************************************** EST sequence 175 +strand 726 n (File: SGN-E550322+) 1 TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 61 CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT 121 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 181 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 241 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 301 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 361 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 421 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 481 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 541 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 601 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 661 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA 721 AAAAAC Predicted gene structure (within gDNA segment 43291 to 38660): Exon 1 42610 42290 ( 321 n); cDNA 1 319 ( 319 n); score: 0.852 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 320 565 ( 246 n); score: 0.810 PPA cDNA 708 725 MATCH C09HBa0278J12.1- SGN-E550322+ 0.834 568 0.782 C PGS_C09HBa0278J12.1-_SGN-E550322+ (42610 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 42551 || | | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 60 CTCTTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT 42491 ||| |||||| |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC 119 TAATTAACTT AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC 42432 ||||| ||| |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| TAATTTACTC AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC 179 ACGAAATATA TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA 42372 || || | || |||||| || |||||||||| ||||||| || | ||||||| | ||||| ACTAACTTTA TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA 238 TCTGACTCCG ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC 42312 || ||| | | |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| TCCGACCCAG ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC 298 ATGCAGGTTC GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC 42252 |||||| || ||| | | CTGCAGG-TC GTCGCAAGGT TC........ .......... .......... .......... 319 GACGGTCCGT CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT 42192 .......... .......... .......... .......... .......... .......... 319 CAAGAGTTGA AGTGTTTTGA AACGGTGGAT C-ACGACGGT TCGTCGTGCC TGTGACGGTC 42133 || || ||| | | | | | |||||| |||| ||| ||||||||| ....AG-AGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 374 CGTCCTGCAG GTCCGTCACA GAGTTCAGAG AGTCGA-TTT TAGCACCCAA ATTTCAGAAT 42074 |||| ||| ||||| || ||||||||| |||||| ||| ||| |||| | |||||||||| CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCC-A ATTTCAGAAT 433 TTCTAAGTGT TTTGGGACGA GACACCCTCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG 42014 |||||||||| |||| |||| ||| ||||| ||||||| || |||| ||||| || ||||||| TTCTAAGTGT TTTGAAACGA GAC-TCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 492 TGGGTTCCGT CGTCTCAGCC TATTTTTCCA GAAATAAAAT CTGCTGCTCA AAATGACTAA 41954 |||||||||| ||||||| || | |||||||| ||||||||| ||||| |||| ||| |||||| TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 552 ACAGGTCGTT ACA 41941 |||||||||| ||| ACAGGTCGTT ACA 565 hqPGS_C09HBa0278J12.1-_SGN-E550322+ (42610 42290,42187 41941) ******************************************************************************** EST sequence 18 -strand 679 n (File: SGN-E550127-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTGCACAA CCATGAATTA ATGAAAAAAT TATGACATAA 661 AATATAAAAA ATTACTCAT Predicted gene structure (within gDNA segment 43211 to 39050): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.854 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 MATCH C09HBa0278J12.1- SGN-E550127- 0.835 559 0.823 C PGS_C09HBa0278J12.1-_SGN-E550127- (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| ||||||| || |||||||||| |||| |||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550127- (42601 42290,42187 41941) ******************************************************************************** EST sequence 22 -strand 673 n (File: SGN-E550140-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTACTCN 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATGTTATCAA CCATGAATTA ACAAAAAATT AGACCAAAAA 661 TATAAAAAAT TAC Predicted gene structure (within gDNA segment 43211 to 39110): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.857 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 MATCH C09HBa0278J12.1- SGN-E550140- 0.836 559 0.831 C PGS_C09HBa0278J12.1-_SGN-E550140- (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| |||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTACTC 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | NAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550140- (42601 42290,42187 41941) ******************************************************************************** EST sequence 39 -strand 681 n (File: SGN-E389553-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCGTTCC TACTTAAATA TTATTATTAT TTTACGATTT 601 ATAACACTAT TAGAAACAAA GATTTTCTCA ACCATGAATT AATGAAAAAA TTATGGAATA 661 AAATATAAAA AATTACTCAT T Predicted gene structure (within gDNA segment 43211 to 39030): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 MATCH C09HBa0278J12.1- SGN-E389553- 0.840 559 0.821 C PGS_C09HBa0278J12.1-_SGN-E389553- (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E389553- (42601 42290,42187 41941) ******************************************************************************** EST sequence 173 +strand 710 n (File: SGN-E550065+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATGA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTGATTCAT AAGAAAAAAA Predicted gene structure (within gDNA segment 43201 to 38730): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 MATCH C09HBa0278J12.1- SGN-E550065+ 0.840 559 0.787 C PGS_C09HBa0278J12.1-_SGN-E550065+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550065+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 176 +strand 732 n (File: SGN-E550201+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCNA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAAACT 721 CGAGGGGGGG CC Predicted gene structure (within gDNA segment 43201 to 38510): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 699 718 MATCH C09HBa0278J12.1- SGN-E550201+ 0.840 559 0.764 C PGS_C09HBa0278J12.1-_SGN-E550201+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550201+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 177 +strand 709 n (File: SGN-E550207+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTNCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 43201 to 38740): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 699 709 MATCH C09HBa0278J12.1- SGN-E550207+ 0.840 559 0.788 C PGS_C09HBa0278J12.1-_SGN-E550207+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550207+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 179 +strand 715 n (File: SGN-E550335+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAATCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCNAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 43201 to 38670): Exon 1 42601 42290 ( 312 n); cDNA 1 309 ( 309 n); score: 0.861 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.54) Exon 2 42187 41941 ( 247 n); cDNA 310 555 ( 246 n); score: 0.814 PPA cDNA 698 715 MATCH C09HBa0278J12.1- SGN-E550335+ 0.840 559 0.782 C PGS_C09HBa0278J12.1-_SGN-E550335+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 237 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 296 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 309 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 313 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAA TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 373 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 432 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 491 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 551 TACA 41941 |||| TACA 555 hqPGS_C09HBa0278J12.1-_SGN-E550335+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 222 +strand 714 n (File: SGN-E390013+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACNAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 43201 to 38690): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 699 714 MATCH C09HBa0278J12.1- SGN-E390013+ 0.840 559 0.783 C PGS_C09HBa0278J12.1-_SGN-E390013+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E390013+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 231 +strand 717 n (File: SGN-E550484+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 43201 to 38660): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 699 717 MATCH C09HBa0278J12.1- SGN-E550484+ 0.840 559 0.780 C PGS_C09HBa0278J12.1-_SGN-E550484+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550484+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 232 +strand 713 n (File: SGN-E550211+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 43201 to 38690): Exon 1 42601 42290 ( 312 n); cDNA 1 309 ( 309 n); score: 0.861 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 310 555 ( 246 n); score: 0.810 PPA cDNA 698 713 MATCH C09HBa0278J12.1- SGN-E550211+ 0.838 559 0.784 C PGS_C09HBa0278J12.1-_SGN-E550211+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 237 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 296 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 309 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 313 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 373 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 432 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 491 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 551 TACA 41941 |||| TACA 555 hqPGS_C09HBa0278J12.1-_SGN-E550211+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 234 +strand 713 n (File: SGN-E549941+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA TATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCGA CCNATGATTA ATGAAAAATT ATGCCATCAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 43201 to 38700): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.806 PPA cDNA 699 713 MATCH C09HBa0278J12.1- SGN-E549941+ 0.838 559 0.784 C PGS_C09HBa0278J12.1-_SGN-E549941+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||| | |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAATA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E549941+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 239 +strand 714 n (File: SGN-E550025+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 43201 to 38690): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 699 714 MATCH C09HBa0278J12.1- SGN-E550025+ 0.840 559 0.783 C PGS_C09HBa0278J12.1-_SGN-E550025+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E550025+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 306 +strand 711 n (File: SGN-E396039+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AAAAACAAAG ATTTTCTCCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AAATAAAAAA AATTTACTCA TTTTTTCTTG GAGCTAATTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 43201 to 38720): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 661 672 MATCH C09HBa0278J12.1- SGN-E396039+ 0.840 559 0.786 C PGS_C09HBa0278J12.1-_SGN-E396039+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E396039+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 312 +strand 711 n (File: SGN-E396056+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAA ATTTTCTCAC CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATAATAAAA ATTTACTCAT TTTTTCTTTG AGCTAATTCA TAAAAAAAAA A Predicted gene structure (within gDNA segment 43201 to 38720): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 311 556 ( 246 n); score: 0.810 PPA cDNA 700 711 MATCH C09HBa0278J12.1- SGN-E396056+ 0.840 559 0.786 C PGS_C09HBa0278J12.1-_SGN-E396056+ (42601 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 552 TACA 41941 |||| TACA 556 hqPGS_C09HBa0278J12.1-_SGN-E396056+ (42601 42290,42187 41941) ******************************************************************************** EST sequence 254 +strand 558 n (File: SGN-E231589+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA TAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTT Predicted gene structure (within gDNA segment 43200 to 40240): Exon 1 42600 42290 ( 311 n); cDNA 1 310 ( 310 n); score: 0.862 Intron 1 42289 42186 ( 104 n); Pd: 0.900 (s: 0.77), Pa: 0.000 (s: 0.54) Exon 2 42185 41941 ( 245 n); cDNA 311 555 ( 245 n); score: 0.812 MATCH C09HBa0278J12.1- SGN-E231589+ 0.840 556 0.996 C PGS_C09HBa0278J12.1-_SGN-E231589+ (42600 42290,42185 41941) Alignment (genomic DNA sequence = upper lines): TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCTTTCTTT 42541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 60 TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT TAATTAACTT 42481 |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 119 AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC ACGAAATATA 42422 |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| || || | || AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 179 TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA TCTGACTCCG 42362 |||||| || |||||||||| ||||||| || | ||||||| | ||||| || ||| | | TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA TCCGACCCAG 238 ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC 42302 |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| |||||| || ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGG-TC 297 GTC-AGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 ||| || || GTCGCAAGGT TCA....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 | | .......... .......... .......... .......... .......... .......TAG 313 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 373 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 432 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 491 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAGGTCGT 41945 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| |||||||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT 551 TACA 41941 |||| TACA 555 hqPGS_C09HBa0278J12.1-_SGN-E231589+ (42600 42290,42185 41941) ******************************************************************************** EST sequence 295 +strand 649 n (File: SGN-E374999+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CCAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTTCAC CCTGAATTAA TGAAAAAAT Predicted gene structure (within gDNA segment 43200 to 39330): Exon 1 42600 42290 ( 311 n); cDNA 1 309 ( 309 n); score: 0.863 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 310 555 ( 246 n); score: 0.806 MATCH C09HBa0278J12.1- SGN-E374999+ 0.838 558 0.860 C PGS_C09HBa0278J12.1-_SGN-E374999+ (42600 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCTTTCTTT 42541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 60 TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT TAATTAACTT 42481 |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 119 AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC ACGAAATATA 42422 |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| || || | || AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 179 TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA TCTGACTCCG 42362 |||||| || |||||||||| ||||||| || | ||||||| | ||||| || ||| | | TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA TCCGACCCAG 238 ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC 42302 |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| |||||| || ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGG-TC 297 GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC GACGGTCCGT 42242 ||| | | GTCGCAAGGT TC........ .......... .......... .......... .......... 309 CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT CAAGAGTTGA 42182 || || .......... .......... .......... .......... .......... ....AG-AGA 314 AGTGTTTTGA AACGGTGGAT C-ACGACGGT TCGTCGTGCC TGTGACGGTC CGTCCTGCAG 42123 ||| | | | | | |||||| |||| ||| ||||||||| |||| ||| CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC CGTCGTGCCA 374 GTCCGTCACA GAGTTCAGAG AGTCGA-TTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT 42064 ||||| || ||||||||| |||||| ||| ||| |||| | |||||||||| |||||||||| TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCC-A ATTTCAGAAT TTCTAAGTGT 433 TTTGGGACGA GACACCCTCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG TGGGTTCCGT 42004 |||| |||| ||| ||||| ||||||| || |||| ||||| || ||||||| |||||||||| TTTGAAACGA GAC-TCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG TGGGTTCCGT 492 CGTCTCAGCC TATTTTTCCA GAAATAAAAT CTGCTGCTCA AAATGACTAA ACAGGTCGTT 41944 ||||||| || | |||||||| ||||||||| ||||| ||| ||| |||||| |||||||||| CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCC AAACGACTAA ACAGGTCGTT 552 ACA 41941 ||| ACA 555 hqPGS_C09HBa0278J12.1-_SGN-E374999+ (42600 42290,42187 41941) ******************************************************************************** EST sequence 350 +strand 690 n (File: SGN-E377133+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG Predicted gene structure (within gDNA segment 43200 to 38920): Exon 1 42600 42290 ( 311 n); cDNA 1 309 ( 309 n); score: 0.863 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41941 ( 247 n); cDNA 310 555 ( 246 n); score: 0.810 MATCH C09HBa0278J12.1- SGN-E377133+ 0.840 558 0.809 C PGS_C09HBa0278J12.1-_SGN-E377133+ (42600 42290,42187 41941) Alignment (genomic DNA sequence = upper lines): TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCTTTCTTT 42541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 60 TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT TAATTAACTT 42481 |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 119 AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC ACGAAATATA 42422 |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| || || | || AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 179 TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA TCTGACTCCG 42362 |||||| || |||||||||| ||||||| || | ||||||| | ||||| || ||| | | TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA TCCGACCCAG 238 ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC 42302 |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| |||||| || ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGG-TC 297 GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC GACGGTCCGT 42242 ||| | | GTCGCAAGGT TC........ .......... .......... .......... .......... 309 CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT CAAGAGTTGA 42182 || || .......... .......... .......... .......... .......... ....AG-AGA 314 AGTGTTTTGA AACGGTGGAT C-ACGACGGT TCGTCGTGCC TGTGACGGTC CGTCCTGCAG 42123 ||| | | | | | |||||| |||| ||| ||||||||| |||| ||| CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC CGTCGTGCCA 374 GTCCGTCACA GAGTTCAGAG AGTCGA-TTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT 42064 ||||| || ||||||||| |||||| ||| ||| |||| | |||||||||| |||||||||| TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCC-A ATTTCAGAAT TTCTAAGTGT 433 TTTGGGACGA GACACCCTCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG TGGGTTCCGT 42004 |||| |||| ||| ||||| ||||||| || |||| ||||| || ||||||| |||||||||| TTTGAAACGA GAC-TCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG TGGGTTCCGT 492 CGTCTCAGCC TATTTTTCCA GAAATAAAAT CTGCTGCTCA AAATGACTAA ACAGGTCGTT 41944 ||||||| || | |||||||| ||||||||| ||||| |||| ||| |||||| |||||||||| CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA ACAGGTCGTT 552 ACA 41941 ||| ACA 555 hqPGS_C09HBa0278J12.1-_SGN-E377133+ (42600 42290,42187 41941) ******************************************************************************** EST sequence 223 +strand 720 n (File: SGN-E389834+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTA CGTCGACTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAGAACGAC 541 TAAACAGGAC GTTACATTTA TGATCGTCCT ACTTAAATAT CATTATTATT TTACGATTTA 601 TAACACTATT AGAAACGAAG ATTTTCTCGA CCATGAATTA ATGAAAAAAT ATGCCATGAA 661 ATATAAAAAT TTACTCGTTC TTCATTGAGC TATTCGTGAA AAAAAAAAAA AAATCGAGGG Predicted gene structure (within gDNA segment 43201 to 38630): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41950 ( 238 n); cDNA 311 547 ( 237 n); score: 0.790 PPA cDNA 699 714 MATCH C09HBa0278J12.1- SGN-E389834+ 0.832 550 0.764 C PGS_C09HBa0278J12.1-_SGN-E389834+ (42601 42290,42187 41950) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| ||||||| || TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTACG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAG 41950 ||| |||| | || ||||||| | |||||||| |||||| ||| | || ||||| ||||| TCGACTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AGAACGACTA AACAG 547 hqPGS_C09HBa0278J12.1-_SGN-E389834+ (42601 42290,42187 41950) ******************************************************************************** EST sequence 233 +strand 713 n (File: SGN-E550464+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GNTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCTA CCATGAATTA ATGAAAAATT ATGCCATAAG 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 43201 to 38700): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41950 ( 238 n); cDNA 311 547 ( 237 n); score: 0.803 PPA cDNA 698 713 MATCH C09HBa0278J12.1- SGN-E550464+ 0.837 550 0.771 C PGS_C09HBa0278J12.1-_SGN-E550464+ (42601 42290,42187 41950) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAG 41950 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| ||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAG 547 hqPGS_C09HBa0278J12.1-_SGN-E550464+ (42601 42290,42187 41950) ******************************************************************************** EST sequence 309 +strand 618 n (File: SGN-E396054+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAA Predicted gene structure (within gDNA segment 43201 to 39650): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41950 ( 238 n); cDNA 311 547 ( 237 n); score: 0.803 MATCH C09HBa0278J12.1- SGN-E396054+ 0.837 550 0.890 C PGS_C09HBa0278J12.1-_SGN-E396054+ (42601 42290,42187 41950) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAG 41950 |||||||| | || ||||||| | |||||||| |||||| ||| |||| ||||| ||||| TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA AACAG 547 hqPGS_C09HBa0278J12.1-_SGN-E396054+ (42601 42290,42187 41950) ******************************************************************************** EST sequence 314 +strand 610 n (File: SGN-E396058+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTGTTT CCAAAAATAA AATCTGCTAC TCACAACGAC 541 TAAACAGGTC GTTACATTTA GGTTCTTCAT AGTTAACTAT TATTATTATT TTACGATTTA 601 TAACACTATT Predicted gene structure (within gDNA segment 43201 to 39730): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41950 ( 238 n); cDNA 311 547 ( 237 n); score: 0.794 MATCH C09HBa0278J12.1- SGN-E396058+ 0.834 550 0.902 C PGS_C09HBa0278J12.1-_SGN-E396058+ (42601 42290,42187 41950) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGA-TT TTAGCACCCA AATTTCAGAA TTTCTAAGTG 42065 ||||| || |||||||| ||||||| || |||| |||| |||||||||| |||||||||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCC- AATTTCAGAA TTTCTAAGTG 433 TTTTGGGACG AGACACCCTC GACGGTCCGT CGTGCCCATG ACGTTCCGTC GTGGGTTCCG 42005 ||||| ||| |||| |||| |||||||| | ||||| |||| ||| |||||| |||||||||| TTTTGAAACG AGAC-TCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG 492 TCGTCTCAGC CTATTTTTCC AGAAATAAAA TCTGCTGCTC AAAATGACTA AACAG 41950 |||||||| | || | ||||| | |||||||| |||||| ||| | || ||||| ||||| TCGTCTCAAC CTGTGTTTCC AAAAATAAAA TCTGCTACTC ACAACGACTA AACAG 547 hqPGS_C09HBa0278J12.1-_SGN-E396058+ (42601 42290,42187 41950) ******************************************************************************** EST sequence 445 +strand 545 n (File: SGN-E241959+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACA Predicted gene structure (within gDNA segment 43200 to 40370): Exon 1 42600 42290 ( 311 n); cDNA 1 309 ( 309 n); score: 0.863 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 41951 ( 237 n); cDNA 310 545 ( 236 n); score: 0.802 MATCH C09HBa0278J12.1- SGN-E241959+ 0.837 548 1.006 C PGS_C09HBa0278J12.1-_SGN-E241959+ (42600 42290,42187 41951) Alignment (genomic DNA sequence = upper lines): TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCTTTCTTT 42541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 60 TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT TAATTAACTT 42481 |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 119 AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC ACGAAATATA 42422 |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| || || | || AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 179 TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA TCTGACTCCG 42362 |||||| || |||||||||| ||||||| || | ||||||| | ||||| || ||| | | TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA TCCGACCCAG 238 ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC 42302 |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| |||||| || ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGG-TC 297 GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC GACGGTCCGT 42242 ||| | | GTCGCAAGGT TC........ .......... .......... .......... .......... 309 CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT CAAGAGTTGA 42182 || || .......... .......... .......... .......... .......... ....AG-AGA 314 AGTGTTTTGA AACGGTGGAT C-ACGACGGT TCGTCGTGCC TGTGACGGTC CGTCCTGCAG 42123 ||| | | | | | |||||| |||| ||| ||||||||| |||| ||| CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC CGTCGTGCCA 374 GTCCGTCACA GAGTTCAGAG AGTCGA-TTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT 42064 ||||| || ||||||||| |||||| ||| ||| |||| | |||||||||| |||||||||| TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCC-A ATTTCAGAAT TTCTAAGTGT 433 TTTGGGACGA GACACCCTCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG TGGGTTCCGT 42004 |||| |||| ||| ||||| ||||||| || |||| ||||| || ||||||| |||||||||| TTTGAAACGA GAC-TCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG TGGGTTCCGT 492 CGTCTCAGCC TATTTTTCCA GAAATAAAAT CTGCTGCTCA AAATGACTAA ACA 41951 ||||||| || | |||||||| ||||||||| ||||| |||| ||| |||||| ||| CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA ACA 545 hqPGS_C09HBa0278J12.1-_SGN-E241959+ (42600 42290,42187 41951) ******************************************************************************** EST sequence 143 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 43669 to 40433): Exon 1 42744 42290 ( 455 n); cDNA 1 459 ( 459 n); score: 0.821 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.74), Pa: 0.000 (s: 0.52) Exon 2 42187 41986 ( 202 n); cDNA 460 660 ( 201 n); score: 0.748 MATCH C09HBa0278J12.1- SGN-E349296- 0.798 657 0.995 C PGS_C09HBa0278J12.1-_SGN-E349296- (42744 42290,42187 41986) Alignment (genomic DNA sequence = upper lines): AACATTATCA ATACATATCA TTCGCTATTA AGAGTTTACT ACGAATATCG TAAGAGAAAC 42685 || ||||||| |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 60 CATAACCTAC CTCCACCGAA GACTAATGAT CAAGCAAGAA TTTTCCAAAG CCTTGTG-TT 42626 |||||||||| |||||||||| || | |||| |||||||| ||||| ||| | ||||| || CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 120 TTTCCTCTTC GTTCGTCTCT CTCTATCGAT TCTCCTTCTC TCTCTTTCTG TT-CT-TTTC 42568 ||||||| || ||||| || || | ||| | | ||||| ||||||||| || | |||| TTTCCTC-TC GTTCGATCCT CTTTCTCGTT CGACTTTCTC TCTCTTTCTC TTGTTCTTTC 179 T-TTTTC-TT ATTCAAACCC TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA 42510 | ||||| || |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TATTTTCTTT ATTCAAACCC TCTTTCTTTT ACCCTAATTA GTATATAATT AAGAATAAAA 239 TGTGGCAATA ATAACCCATT AATTAACTTA AGGTTACCTC TTTTAACCCC CAAGAAATT- 42451 | |||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||| |||| TATGGCAATA ATAACCCACT AATTAACTTA AGGTTACCTC TTTTAACCCC CAAGTAATTA 299 TAGTCATTAA TATAAACCCA CGAAATATAT AATTATAGCA GGAATAGTCC AAAACGCCCC 42391 | | ||||| || |||||| | || | ||| ||||| |||| ||||||||| |||||| ||| GACTTATTAA CATTAACCCA CTAACTTTAT AATTAAAGCA GGAATAGTCA AAAACGTCCC 359 TTTAAAACTT AACCAGAAAT CTGACTCCGA CTGGGA-TTA CGCAACCTGT GACGGCCCGT 42332 ||||||| ||| | | ||||| || |||||| ||| |||| ||||| ||| |||||| -TTAAAACAA TTGAGGAATT CCGACTCAGA CTGGGATTTA CGCAGCCTGT GACAGCCCGT 418 CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC GTCAGAGACT CGATTTCCTT AAGGAGTCTG 42272 | ||||||| ||||| |||| |||||| || ||| | | TGTGCCTGCG ACGGTCCGTC CTGCAGG-TC GTCGCAAGGT TC........ .......... 459 TGACGGCCCG TCGTACCTAC GACGGTCCGT CCTGCACTTC CGTCACGACG TTCAGAGAAT 42212 .......... .......... .......... .......... .......... .......... 459 CGTTCCCTGT ACCAAATTCT CAAGAGTTGA AGTGTTTTGA AACGGTGGAT C-ACGACGGT 42153 || || | ||| | | | | | || ||| .......... .......... ....AG-AGA CTGGATTTTC ACTGAAGACT CTGTGATGGT 494 TCGTCGTGCC TGTGACGGTC CGTCCTGCAG GTCCGTCACA GAGTTCAGAG AGTCGATTTT 42093 | || ||| |||||||||| |||| ||| ||||| || ||||||||| |||||||||| CCATCACGCC TGTGACGGTC CGTCTTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT 554 -AGCACCCAA ATTTCAGAAT TTCTAAGTGT TTTGGGACGA GACACCCTCG ACGGTCCGTC 42034 || |||| | |||||||| | | |||||||| |||| | || ||| || || |||||||||| CAGTACCC-A ATTTCAGATT TCCTAAGTGT TTTGAAATGA GAC-CCTGCG ACGGTCCGTC 612 GTGCCCATGA CGTTCCGTCG TGGGTTCCGT CGTCTCAGCC TATTTTTC 41986 |||||||||| | ||||||| |||| ||||| | | || ||| |||||| GTGCCCATGA TGGTCCGTCG TGGGGTCCGT CATTTCTGCC AGTTTTTC 660 hqPGS_C09HBa0278J12.1-_SGN-E349296- (42744 42290,42187 41986) ******************************************************************************** EST sequence 82 -strand 390 n (File: SGN-E242274-) 1 AATTAATTCA AGGTTATCTC CTTCAACCCC CCAAGTAATT GAATTATTAA CATTAAACCA 61 CTAATTTCAT AATTATAAGC AGGAATAGTC CAAAACGCCC CTTAAAACAT TTAACAAAAA 121 TCCGACCCAG TCAGGGTTAC GCAGTCTGTG ACGACCAGTC GTGCCTGCGA CGGTCCGTCC 181 TGCTGCTTCC GTCACAAAGT TCAGAGATTA AATTTCACTA AGGGTTTGTG ACAGCCCGTC 241 ATGCCTGTGA CGGTCCGTCG TGCCATTTCG TCGCGAAGTT CAGAGAGTCG ATCTCAGTAC 301 CCAAATTTCA GAATTCTAAG TGTTTTGGAA CGAGACACCC TCCACGGTCC GTCGTGCTCA 361 TGACGGTCCG TCGTGGGATC CGTCGACTCA Predicted gene structure (within gDNA segment 45166 to 40723): Exon 1 42489 42306 ( 184 n); cDNA 1 185 ( 185 n); score: 0.777 Intron 1 42305 42236 ( 70 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.64) Exon 2 42235 42192 ( 44 n); cDNA 186 229 ( 44 n); score: 0.636 Intron 2 42191 42159 ( 33 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 3 42158 41997 ( 162 n); cDNA 230 390 ( 161 n); score: 0.864 MATCH C09HBa0278J12.1- SGN-E242274- 0.818 390 1.000 C PGS_C09HBa0278J12.1-_SGN-E242274- (42489 42306,42235 42192,42158 41997) Alignment (genomic DNA sequence = upper lines): AATTAACTTA AGGTTACCTC TTTTAA-CCC CCAAGAAATT TAGTCATTAA TATAAACCCA 42431 |||||| | | |||||| ||| || || ||| ||||| |||| | | ||||| || || ||| AATTAATTCA AGGTTATCTC CTTCAACCCC CCAAGTAATT GAATTATTAA CATTAAACCA 60 CGAAATATAT AATTAT-AGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA 42372 | || | || |||||| ||| |||||||||| |||||||||| ||| ||| | | | || ||| CTAATTTCAT AATTATAAGC AGGAATAGTC CAAAACGCCC CTTAAAACAT TTAACAAAAA 120 TCTGACTCCG ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC 42312 || ||| | | | ||| ||| |||| |||| |||| || || || ||||||| ||||| |||| TCCGACCCAG TCAGGG-TTA CGCAGTCTGT GACGACCAGT CGTGCCTGCG ACGGTCCGTC 179 ATGCAGGTTC GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC 42252 ||| | CTGCTG.... .......... .......... .......... .......... .......... 185 GACGGTCCGT CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT 42192 |||| |||||| | | |||||||| | | | | | || | .......... ......CTTC CGTCACAAAG TTCAGAGATT AAATTTCACT AAGGGTTTGT 229 CAAGAGTTGA AGTGTTTTGA AACGGTGGAT CACGACGGTT CGTCGTGCCT GTGACGGTCC 42132 ||| | |||| ||||| |||||||||| .......... .......... .......... ...GACAGCC CGTCATGCCT GTGACGGTCC 256 GTCCTGCAGG TCCGTCACAG AGTTCAGAGA GTCGATTTTA GCACCCAAAT TTCAGAATTT 42072 ||| ||| | |||| | |||||||||| |||||| | | | |||||||| ||||||| || GTCGTGCCAT TTCGTCGCGA AGTTCAGAGA GTCGATCTCA GTACCCAAAT TTCAGAA-TT 315 CTAAGTGTTT TGGGACGAGA CACCCTCGAC GGTCCGTCGT GCCCATGACG TTCCGTCGTG 42012 |||||||||| ||| |||||| ||||||| || |||||||||| || ||||||| ||||||||| CTAAGTGTTT TGGAACGAGA CACCCTCCAC GGTCCGTCGT GCTCATGACG GTCCGTCGTG 375 GGTTCCGTCG TCTCA 41997 || ||||||| |||| GGATCCGTCG ACTCA 390 hqPGS_C09HBa0278J12.1-_SGN-E242274- (42489 42306,42235 42192,42158 41997) ******************************************************************************** EST sequence 326 +strand 472 n (File: SGN-E236652+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GA Predicted gene structure (within gDNA segment 43200 to 41100): Exon 1 42600 42290 ( 311 n); cDNA 1 309 ( 309 n); score: 0.863 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 42024 ( 164 n); cDNA 310 472 ( 163 n); score: 0.750 MATCH C09HBa0278J12.1- SGN-E236652+ 0.824 475 1.006 C PGS_C09HBa0278J12.1-_SGN-E236652+ (42600 42290,42187 42024) Alignment (genomic DNA sequence = upper lines): TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCTTTCTTT 42541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 60 TACCCTAATT AGCATATAAT TAAGAATAAA ATGTGGCAAT AATAACCCAT TAATTAACTT 42481 |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 119 AAGGTTACCT CTTTTAACCC CCAAGAAATT -TAGTCATTA ATATAAACCC ACGAAATATA 42422 |||||||||| |||||||||| ||| | |||| | | |||| | |||||||| || || | || AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 179 TAATTATAGC AGGAATAGTC CAAAACGCCC CTTTAAAACT TAACCAGAAA TCTGACTCCG 42362 |||||| || |||||||||| ||||||| || | ||||||| | ||||| || ||| | | TAATTAAAGT AGGAATAGTC CAAAACGTCC C-TTAAAACG TGTAAAGAAA TCCGACCCAG 238 ACTGGGATTA CGCAACCTGT GACGGCCCGT CGCGCCTGCG ACGGTTCGTC ATGCAGGTTC 42302 |||||||||| |||||||||| || ||||||| || ||||||| ||||| |||| |||||| || ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGG-TC 297 GTCAGAGACT CGATTTCCTT AAGGAGTCTG TGACGGCCCG TCGTACCTAC GACGGTCCGT 42242 ||| | | GTCGCAAGGT TC........ .......... .......... .......... .......... 309 CCTGCACTTC CGTCACGACG TTCAGAGAAT CGTTCCCTGT ACCAAATTCT CAAGAGTTGA 42182 || || .......... .......... .......... .......... .......... ....AG-AGA 314 AGTGTTTTGA AACGGTGGAT C-ACGACGGT TCGTCGTGCC TGTGACGGTC CGTCCTGCAG 42123 ||| | | | | | |||||| |||| ||| ||||||||| |||| ||| CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC CGTCGTGCCA 374 GTCCGTCACA GAGTTCAGAG AGTCGA-TTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT 42064 ||||| || ||||||||| |||||| ||| ||| |||| | |||||||||| |||||||||| TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCC-A ATTTCAGAAT TTCTAAGTGT 433 TTTGGGACGA GACACCCTCG ACGGTCCGTC GTGCCCATGA 42024 |||| |||| ||| ||||| ||||||| || |||| ||||| TTTGAAACGA GAC-TCCTCG ACGGTCCATC GTGCTCATGA 472 hqPGS_C09HBa0278J12.1-_SGN-E236652+ (42600 42290,42187 42024) ******************************************************************************** EST sequence 121 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 44715 to 39205): Exon 1 42555 42290 ( 266 n); cDNA 156 422 ( 267 n); score: 0.808 Intron 1 42289 42186 ( 104 n); Pd: 0.900 (s: 0.70), Pa: 0.000 (s: 0.54) Exon 2 42185 42061 ( 125 n); cDNA 423 548 ( 126 n); score: 0.728 MATCH C09HBa0278J12.1- SGN-E356257- 0.783 391 0.714 C PGS_C09HBa0278J12.1-_SGN-E356257- (42555 42290,42185 42061) Alignment (genomic DNA sequence = upper lines): AAACCCTCTT TCTTTTACCC -TAATTAGCA TATAATTAAG AATAAAATGT GGCAATAATA 42497 |||||||||| |||||||||| ||||| || |||||||||| ||||||| | |||||||||| AAACCCTCTT TCTTTTACCC CAAATTAACA TATAATTAAG AATAAAAGAT GGCAATAATA 215 ACCCATTAAT TAACTTAAGG TTACCTCTTT TAACCCCCAA GAAATTTAGT CATTAATATA 42437 |||| |||| ||||||| || |||||||||| ||| |||||| ||| || ||| ||||||||| CCCCACTAAT TAACTTAGGG TTACCTCTTT TAA-CCCCAA GAATTTGAGT TATTAATATA 274 AACCCACGAA ATATATAATT ATAGCAGGAA TAGTCC-AAA ACGCCCCTTT AAAACTTAAC 42378 |||||||||| || ||||||| | | | ||| |||||| ||| ||| ||| || ||||| | AACCCACGAA ATCTATAATT AAGGAAAGAA TAGTCCAAAA ACGTCCC-TT AAAACGTGTA 333 CAGAAATCTG ACTCCGACTG GGA-TTACGC AACCTGTGAC GGCCCGTCGC GCCTGCGACG 42319 |||||| | | || | ||| ||| || ||| |||||||||| || |||||| | ||| |||| AGGAAATCCG ATTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GACTGTGACG 393 GTTCGTCATG CAGGTTCGTC -AGAGACTCG ATTTCCTTAA GGAGTCTGTG ACGGCCCGTC 42260 || |||| || |||| ||||| || || GTCCGTCCTG CAGG-TCGTC GCAAGGGTCA .......... .......... .......... 422 GTACCTACGA CGGTCCGTCC TGCACTTCCG TCACGACGTT CAGAGAATCG TTCCCTGTAC 42200 .......... .......... .......... .......... .......... .......... 422 CAAATTCTCA AGAGTTGAAG TGTTTTGAAA CGGTGGATC- ACGACGGTTC GTCGTGCCTG 42141 || ||| | | ||| | |||||| | ||| ||||| .......... ....GAGAGT CAATTTCCAC TGAACAATCT ATGACGGTCC GTCACGCCTG 468 TGACGGTCCG TCCTGCAGGT CCGTCACAGA GTTCAGAGAG TCGATTTT-A GCACCCAAAT 42082 ||| |||||| ||||| | ||||||| | |||||||||| |||||||| | | |||| ||| TGATGGTCCG TCCTGTCATT CCGTCACGAA GTTCAGAGAG TCGATTTTCA GTACCC-AAT 527 TTCAGAATTT CTAAGTGTTT T 42061 |||||| ||| |||||||||| | TTCAGATTTT CTAAGTGTTT T 548 hqPGS_C09HBa0278J12.1-_SGN-E356257- (42555 42290,42185 42061) ******************************************************************************** EST sequence 107 -strand 565 n (File: SGN-E275667-) 1 GAGACATCTG TGACGGACCG TCGTGCCTGT GACGGTCCGT CGTGGGTTCC GTTGTTTCAG 61 CCAATTTTCC AGAAATAAAA TCTGCTGCTC AAAACGACTA AACAGGTCGT TACAGTAATG 121 AAAAAAAAGA AGAAAGAGAA TAAAGAAAGA AGAAAGAAAG AGAAAAGGGA AGAAGAAGAA 181 AGAGAAAAAG AAAAAGAAAA AGAAAATGAA ATTGATAAAA TAAGAAAAAT AAAAATAAAA 241 ATTAATACGT GGCAGATTAT AATTGATGCG TAATTGAACT TCTTTTTTTG CAAGTGAGGA 301 TGGTTAAAAA ATGAGATATT TACAACACTT TAAAATTATT TAAGGGAGTA ATAAAATGTC 361 CGCTAAGTTA AGATATCTTT TTAATAATTT AAAATAACTT TAATGGTATT TTTATATCTT 421 TTCTCAAATA TTAAACTTTT TTAGAATACA CTCAATTCGC CTCAATGTCT TTTAAAATTT 481 TGACATTATG AATATCGACA TCACATGGTG CATATGCAAA AGTAATCACA TTATTATTGA 541 ATAGATCTAA TCTTTCATTG AGCGC Predicted gene structure (within gDNA segment 42980 to 36831): Exon 1 42055 41938 ( 118 n); cDNA 1 117 ( 117 n); score: 0.873 Intron 1 41937 39963 (1975 n); Pd: 0.000 (s: 0.94), Pa: 0.321 (s: 0) Exon 2 39962 39945 ( 18 n); cDNA 118 135 ( 18 n); score: 0.778 Intron 2 39944 39567 ( 378 n); Pd: 0.000 (s: 0), Pa: 0.763 (s: 0) Exon 3 39566 39560 ( 7 n); cDNA 136 142 ( 7 n); score: 0.714 Intron 3 39559 39310 ( 250 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62) Exon 4 39309 39238 ( 72 n); cDNA 143 212 ( 70 n); score: 0.611 Intron 4 39237 39148 ( 90 n); Pd: 0.128 (s: 0.64), Pa: 0.000 (s: 0.60) Exon 5 39147 39102 ( 46 n); cDNA 213 259 ( 47 n); score: 0.598 MATCH C09HBa0278J12.1- SGN-E275667- 0.774 261 0.462 C PGS_C09HBa0278J12.1-_SGN-E275667- (42055 41938,39962 39945,39566 39560,39309 39238,39147 39102) Alignment (genomic DNA sequence = upper lines): GAGACACCCT CGACGGTCCG TCGTGCCCAT GACGTTCCGT CGTGGGTTCC GTCGTCTCAG 41996 |||||| | ||||| ||| ||||||| | |||| ||||| |||||||||| || || |||| GAGACATCTG TGACGGACCG TCGTGCCTGT GACGGTCCGT CGTGGGTTCC GTTGTTTCAG 60 CCTATTTTTC CAGAAATAAA ATCTGCTGCT CAAAATGACT AAACAGGTCG TTACACAAGC 41936 || | ||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||| | CC-AATTTTC CAGAAATAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAGTA.. 117 TCCAAAAATC TTTAGGGTTA TTTTAATAAT AGATAAACAT GTGCATCAAT TGTGTATTTA 41876 .......... .......... .......... .......... .......... .......... 117 AAAAATCTCA GATGATGATA TGGAACTTTC ATACCATAAT TTTTGGAGAA TACCAAATTT 41816 .......... .......... .......... .......... .......... .......... 117 CATCTCATGA CATGAGATCA ACATGAAATC GCATGTTCAA ACGCTGATTA CATCTCACAA 41756 .......... .......... .......... .......... .......... .......... 117 TTCTATATCG TGATATGATA TGACCAAACG CCTACTAAGT CAAGATTTTT TTTTATATAA 41696 .......... .......... .......... .......... .......... .......... 117 ATATAATTTC TTTGCTATTG ATTATTGATT AATCCATTAA AAATGAATTA TCCAATAAAA 41636 .......... .......... .......... .......... .......... .......... 117 AATCGAAGAC TCTTATCAAG ATTTTGAACT AATAATCCAT TAGCAACAAA TTAACAACTT 41576 .......... .......... .......... .......... .......... .......... 117 TATTTAAATA ATCAACTTTG CGTCAATTAT AAATAATCCT AAGATAAATA CATATTTTAA 41516 .......... .......... .......... .......... .......... .......... 117 ACTCACTCAC AAAAAGTAAA TCACGTTAAG ATACAATAGT TCGCAACAAA TAGAAGAATA 41456 .......... .......... .......... .......... .......... .......... 117 CCGTGTAAAC CCCTACTAAT AGAAAATGGA CAAGAATATC AAAAAATTGA AGTGATTTTA 41396 .......... .......... .......... .......... .......... .......... 117 ATTTTCTCGT TTGATGTTAG TTTTTTCCTT CAAAAGTTTG GAATTGTCAA TAGTACCTTT 41336 .......... .......... .......... .......... .......... .......... 117 ACTATTTTTT TACTTATCTA CTATACTATT ATATAAATGT AAATAAGTAT AAAACTAGGC 41276 .......... .......... .......... .......... .......... .......... 117 GTCAACATGT CTGCTTCAAT TTTATTATAA TTACTATTTG ACTTACTGGC CAAAGTTAGA 41216 .......... .......... .......... .......... .......... .......... 117 TATTCCATGT ACAATGTCCC AGTTTCAAAC CTGGCCAACA TTTTTTTTCA TCTCATTTTT 41156 .......... .......... .......... .......... .......... .......... 117 AATGCCTTTA GTAGTTTTTT TAAATAATTT ATTTCATTAA TTAAATACTA ATAATCTATA 41096 .......... .......... .......... .......... .......... .......... 117 TTATTACTTA TTTATGTTTT AGTTATTTCA ATTTATTTCT TTTAGACTCA AATTATAGAC 41036 .......... .......... .......... .......... .......... .......... 117 AATATAATTA TTTTATTATA TTAATATGCA AAAAGCTACA ATTTATAGTT ATTTTTTGTA 40976 .......... .......... .......... .......... .......... .......... 117 TAATTTTTGA GTATCTAATT TTTTTGTTAA AAATGTATAA CTATATTTAA TTTAATTTAA 40916 .......... .......... .......... .......... .......... .......... 117 CTTATAAAAT TAATTAAACT GACTTTTTTA AAAAGCGTAA CATGACAATT AAAAGTGAAT 40856 .......... .......... .......... .......... .......... .......... 117 GAAAGAAGTA GTAAATAGTA CAATTATTTG GGGGCCACTT CAATTAGTAT TTCCGATCAT 40796 .......... .......... .......... .......... .......... .......... 117 AAATTTTTTT AAATTACATT CTTATGAATG TCAATCTTTA TTTGCTAATA AAAATTTAGT 40736 .......... .......... .......... .......... .......... .......... 117 CAACTTTCAA AATTCTATTG TGCCTCATAA AATGGAATTT AAAATATATT ATTTGAAGAT 40676 .......... .......... .......... .......... .......... .......... 117 GACCTTAAAA TTACTAAGAA TCACAGTAAT TATCAACATG AAATATTTAA AAGGCTTTAA 40616 .......... .......... .......... .......... .......... .......... 117 AAAATTATTT GATTCAAACA CAGAAGGTGA CATATGTTAT TCAAAAAAAT ATTATAAATT 40556 .......... .......... .......... .......... .......... .......... 117 ACAAAATTTA ATACTTTAGC ATATCTCATA AAATATCTTG TATCTCACTT TGTAAAGAGA 40496 .......... .......... .......... .......... .......... .......... 117 CAAGGAAAAA ATATTGAAAA ATTGGCTCTT GCCTCCCCAA GAACTTGTCT TCCTTACTTG 40436 .......... .......... .......... .......... .......... .......... 117 CTTTCTTTAC TGTTTTGTGG CCTGTTTGTT TGACTGTCTT GCTTATTGTT CCTTGTGTGT 40376 .......... .......... .......... .......... .......... .......... 117 TTGGTTGGCT GTTGGACTGA GTTTTGAAGA GTTGTGCAAG CCTTCATATA CTGTCCCACG 40316 .......... .......... .......... .......... .......... .......... 117 AGGTGAAAAT TTGACCCTGT GACAAGAATA TCTCAAGACA ACTAACAAAA GGCTAATTTT 40256 .......... .......... .......... .......... .......... .......... 117 TGCACTGCTG GGATGATTTT AAAATATTTA ATTTTAATTC TATATTATAA TTTGATCAAA 40196 .......... .......... .......... .......... .......... .......... 117 AAATTAAAAT GATATAATTT TTTAAAAATA CTTTCTTTTT TTCAAAAAGA TTAGCCTAGT 40136 .......... .......... .......... .......... .......... .......... 117 TTGACTTAGA ATGAAGTTTT AGAAAATAAA GAAGATTTTT TAATTTTGTG ATTCTAATTT 40076 .......... .......... .......... .......... .......... .......... 117 AAAGTTATAT CAAACATACC AAAATACCCT TTAATCTTGT AATCTTAAAT ATGTTACGTA 40016 .......... .......... .......... .......... .......... .......... 117 AAAATTAAAA TAAAAGTGTT GTAAAAAAAA ATGAATCATT CTTTTTAAAA TAGATTAAAA 39956 || |||| .......... .......... .......... .......... .......... ...ATGAAAA 124 AAAATAAGAT CATTCTTTTG AAACGGAGAG AGTTGCTCTA ATATTACTTC TATTCTATTT 39896 |||| |||| AAAAGAAGAA A......... .......... .......... .......... .......... 135 ACTTTTATCT AAATTTAGAA AGTTTATTTA CTATTTGAAA TCGGATTTAA AAAATGTAAA 39836 .......... .......... .......... .......... .......... .......... 135 ATTACTTAAA TACACTACTT TAATTATCTT AATAACCATT TATCCCAATT TATTTTAAAA 39776 .......... .......... .......... .......... .......... .......... 135 TTTTCAAAAA TCCCTTATTC CCCCAATTTA AAAAAATATA AAAGATAGAT ACATCAAGAT 39716 .......... .......... .......... .......... .......... .......... 135 TTCCCACCTT TTTTTCACCC AATTGGCAAG TTTTACTTTA ACAAAAACTA AATCCTATTT 39656 .......... .......... .......... .......... .......... .......... 135 TCAAGCTATC CACTTCCCCA TTAACATCAC CAATTAAAAT TTACCATATT AATTTTATTC 39596 .......... .......... .......... .......... .......... .......... 135 CTTTTCCTTT TTATTTCCCT ACATTGTAGG TGTATAATTG TCTACTCCCC ATTCCACACG 39536 | | ||| .......... .......... .........G AGAATA.... .......... .......... 142 TTTGCAGGTA AATTTTGAAT TCCAGTTCAA ATTTTCATCC ATATTTAATA TTTTGTAGGA 39476 .......... .......... .......... .......... .......... .......... 142 CTCTCTTTCC ATCTAACCAG ATTTTCTCCT TCATTCTCTT TCATCTTGTG AGTTTACAAA 39416 .......... .......... .......... .......... .......... .......... 142 TATCATGGAA GATTGTGGTA ATTTCAAACG TGTTTATGAT TCTGATGATG AGTTGTGGGC 39356 .......... .......... .......... .......... .......... .......... 142 TGAGAATAGA TCTAAGAGAC TACATGACCC ATTGTTGATG AAGAACAACA ATGTACTTGA 39296 || | | | | | .......... .......... .......... .......... ......AAGA AAG-AAGAAA 155 GCCAAAGAAG AAGACTGAAG AAATCAAGAA AAAAAGGCCA AGAAAAGTTA CATCAACTGT 39236 | | |||| | | |||| || |||| |||||| | |||||| | || || | GAAAGAGAAA AGGGAAGAAG -AAGAAAGAG AAAAAGAAAA AGAAAAAGAA AATGAAAT.. 212 TTCAAGACCC ACACTTCCTA AGGTATGTGT TTAAAATTCA TAATTTTGTG TTTTTGTTTA 39176 .......... .......... .......... .......... .......... .......... 212 TAATACCCTA ATTGTAAACT GTTGTATGTG TTTGTAAACT GAAATTAACA ATGAAGATTG 39116 || | | | ||| ||| | || || ||| .......... .......... ........TG ATAAAATAAG AAAAATAAAA ATAAAAATTA 244 ATACAT-TCA AATTA 39102 |||| | || |||| ATACGTGGCA GATTA 259 hqPGS_C09HBa0278J12.1-_SGN-E275667- (42055 41938) ******************************************************************************** EST sequence 139 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 43842 to 36244): Exon 1 43148 43078 ( 71 n); cDNA 1 71 ( 71 n); score: 0.972 Intron 1 43077 43045 ( 33 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.78) Exon 2 43044 42901 ( 144 n); cDNA 72 209 ( 138 n); score: 0.705 Intron 2 42900 42866 ( 35 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.77) Exon 3 42865 42370 ( 496 n); cDNA 210 716 ( 507 n); score: 0.741 MATCH C09HBa0278J12.1- SGN-E546548- 0.757 711 0.981 C PGS_C09HBa0278J12.1-_SGN-E546548- (43148 43078,43044 42901,42865 42370) Alignment (genomic DNA sequence = upper lines): GGTACCGGAA CGTGGCACCC GATCCATATT CTATTCTGGT GTCGGAACGT GACACTCCGA 43089 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 60 TCCTCATATA CTATCATGGT ACCGGAACGT GGCACCCGAT CCATATTCTA TCCTGGTGTC 43029 ||||||||| | |||||| ||||||| | TCCTCATATT C......... .......... .......... ....ATTCTA TCCTGGTACC 87 GGAACGTGAC ACTCCGATCC TCATATACTA TCCTG-GTAC CGGAACGTGG TACCCGATCC 42970 |||||||| | || ||||||| | || | | || | | | || || ||| GGAACGTGGC AC-CCGATCC -CCTAATCCA TCAAGCCTTC TTTTAC--AC TAAGGCATCA 143 CCTAATCTCC TTCTATCAAT TCATCAAGCC TTCTTTCTTA CCAAAGACAT CATCAATCTC 42910 | | |||| || ||| ||| | |||||||| ||||||| || | ||| ||| ||||| |||| TC-ATTCTCA TTATAT-AAT TTATCAAGCC TTCTTTCATA -CTAAGGCAT CATCATTCTC 200 ATTATTTTAG TTCATTACGC CTTCTTTTAT ACCAAGGCCT CATCATTAAC AAAGAGATTA 42850 ||||| | | || | || |||| ATTATATAA. .......... .......... .......... ....TATATC AAGCGAATTA 225 GGGTT-TTTC AAGATTTGGG ATTCAATAAC TTCATCATGC -TT-AT-A-T AATCACAATT 42795 ||||| |||| |||||||||| ||||||| | |||||||||| || | | | ||| ||||| GGGTTCTTTC AAGATTTGGG ATTCAATTGC TTCATCATGC TTTGTTAATT CATCGCAATT 285 ATATAATTAC ATTCATGCAA GCATACAA-T TAAGCACATA GCAGGGTTTA CAACATTATC 42736 ||||| | | |||||||| |||||||| | |||||||||| |||||||||| ||| | |||| TCATAATCAT AATCATGCAA GCATACAACT TAAGCACATA GCAGGGTTTA CAATACTATC 345 AATACATATC ATTCGCTATT AAGAGTTTAC TACGAATATC GTAAGAGAAA CCATAACCTA 42676 || ||||| |||| ||||| ||||||| || |||||||||| |||| | ||| |||||||||| AACACATAAT ATTCACTATT AAGAGTTCAC TACGAATATC GTAACATAAA CCATAACCTA 405 CCTCCACCGA AG-ACT-AAT GATCAAGCAA GAATTTTCCA AAGCCTTGTG TTTTTCCTC- 42619 |||||||||| || | | ||| | ||||| | || || | || ||||| | || || CCTCCACCGA AGAATTGAAT CAACAAGCTA -TCTTCTCAA AATCCTTGCT ATCCTCTTCG 464 TTCGTTCGTC TCT-CTCTAT CGATTCTCCT TCTCTCTCT- TTCTGTTCTT TTCTTTT-TC 42562 || | || ||| ||| | || |||||| ||||| ||| |||| ||||| || |||| | TTTCTCTCTC TCTACTCGTT CGTTTCTCC- TCTCTTTCTG TTCTTTTCTT TTGTTTTGTT 523 TTATTCAAAC CCTCTTTC-T TTTACCCTAA TTAGCA-TAT AATTAAGAAT AAAATGTGGC 42504 |||||||||| |||| ||| | |||||||||| ||| | ||| ||||||| | ||| | | TTATTCAAAC CCTCCTTCTT TTTACCCTAA TTAAAAGTAT AATTAAGTGT AAAGGAGGAC 583 AATAATAACC CATTAATTAA CTTAAGGTTA CCTCTTTTAA CCCCCAAGAA ATT-TAGTCA 42445 ||||| |||| || ||||||| |||||||||| |||||||||| |||||||| | ||| | | AATAA-AACC CACTAATTAA CTTAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACCTA 642 TTAATATAAA CCCACGAAAT ATATAATTAT AGCAGGAATA GTCCAAAACG CCCCTTTAAA 42385 ||||||| || ||| | | | |||||||| | | ||||| |||||||||| ||| |||| TTAATATTAA CCCTCAATCT TTATAATTAA GGAAAGAATA GTCCAAAACG ACCC-CTAAA 701 ACTTAACCAG AAATC 42370 || | || |||| ACGTGTAGAG GAATC 716 hqPGS_C09HBa0278J12.1-_SGN-E546548- (43148 43078,43044 42901,42865 42370) ******************************************************************************** EST sequence 63 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 42993 to 38791): Exon 1 42158 41930 ( 229 n); cDNA 90 298 ( 209 n); score: 0.803 MATCH C09HBa0278J12.1- SGN-E252199- 0.803 229 0.423 C PGS_C09HBa0278J12.1-_SGN-E252199- (42158 41930) Alignment (genomic DNA sequence = upper lines): GACGGTTCGT CGTGCCTGTG ACGGTCCGTC CTGCAGGTCC GTCACAGAGT TCAGAGAGTC 42099 ||||| | | | ||||||| |||||||||| |||| ||| ||||| ||| |||||||||| GACGGCCCAT CACGCCTGTG ACGGTCCGTC CTGCCATTCC GTCACGAAGT TCAGAGAGTC 149 GATTTTAGCA CCCAAATTTC AGAATTTCTA AGTGTTTTGG GACGAGACAC CCTCGACGGT 42039 ||||| || | |||||||||| |||| ||||| |||||||||| ||||||| | |||||||||| GATTTCAGTA CCCAAATTTC AGAA-TTCTA AGTGTTTTGG AACGAGACCC CCTCGACGGT 208 CCGTCGTGCC CATGACGTTC CGTCGTGGGT TCCGTCGTCT CAGCCTATTT TTCCAGAAAT 41979 |||||||| | | || |||||| | | | | ||| ||| |||||||||| CCGTCGTG-- ---G--GATC CGTCGT---C T-C--AG--T CAG----TTT TTCCAGAAAT 249 AAAATCTGCT GCTCAAAATG ACTAAACAGG TCGTTACACA AGCTCCAAA 41930 |||||||| | ||||||| | |||||||||| |||||||| || | | || AAAATCTGTT ACTCAAAACG ACTAAACAGG TCGTTACAAT AGATACCAA 298 hqPGS_C09HBa0278J12.1-_SGN-E252199- (42158 41930) ******************************************************************************** EST sequence 1 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 46792 to 41123): Exon 1 43187 43084 ( 104 n); cDNA 85 180 ( 96 n); score: 0.707 Intron 1 43083 43039 ( 45 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0) Exon 2 43038 43007 ( 32 n); cDNA 181 212 ( 32 n); score: 0.844 Intron 2 43006 42968 ( 39 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.78) Exon 3 42967 42652 ( 316 n); cDNA 213 522 ( 310 n); score: 0.858 MATCH C09HBa0278J12.1- SGN-E347579- 0.820 452 0.747 C PGS_C09HBa0278J12.1-_SGN-E347579- (43187 43084,43038 43007,42967 42652) Alignment (genomic DNA sequence = upper lines): GTGTCGGAAC GTGACACTCC GATCCTCATA TACTATCCTG GTACCGGAAC GTGGCACCCG 43128 ||| ||| | ||||||| || ||||| | || | | | | || || | | ||| |||||| GTGCCGGTTC GTGACAC-CC GATCCCC-TA -ATTCTAC-- GTGCCAGTTC GTGACACCCG 139 AT-CCATATT CTATTCTGGT GTCGGAACGT GACACTCCGA TCCTCATATA CTATCATGGT 43069 || || || | | | | || ||||| ||| ||||| |||| ||| | ATCCCCTAAT -TCTAC--GT GTCGGTTCGT GACAC-CCGA TCCCC..... .......... 180 ACCGGAACGT GGCACCCGAT CCATATTCTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC 43009 | | ||||| || ||||||| |||||||||| .......... .......... .......... TGCATGTGTC GGTACGTGAC ACTCCGATCC 210 TCATATACTA TCCTGGTACC GGAACGTGGT ACCCGATCCC CTAATCTCCT TCTATCAATT 42949 | |||| || | ||| | || | AC........ .......... .......... .......... .TAATATCAT TCTGT-AAAT 230 CATCAAGCCT TCTTTCTTAC CAAAGACATC ATCAATCTCA TTATTTTAGT TCATTACGCC 42889 ||||| |||| ||| | ||| | ||| |||| ||||||| || ||| ||| | |||| | ||| CATCAGGCCT TCTCT-ATAC C-AAGGCATC ATCAATCCCA TTACTTTTAT TCATCAAGCC 288 TTCTTTTATA CCAAGGCCTC ATCATTAACA AAGAGATTAG GGTTTT-TCA AGATTTGGGA 42830 ||||| |||| ||||||| || |||||||| |||||||||| |||| ||| |||||||||| TTCTTCTATA CCAAGGCATC ATCATTAA-T AAGAGATTAG ATTTTTATCA AGATTTGGGA 347 TTCAATAACT TCATCATGCT T-ATATAATC ACAATTATAT AATTACATTC ATGCAAGCAT 42771 |||||||||| |||||||||| | |||||||| |||||||||| ||| || ||| ||||| |||| TTCAATAACT TCATCATGCT TAATATAATC ACAATTATAT AATCACGTTC ATGCATGCAT 407 ACAATTAAGC ACATAGCAGG GTTTACAACA TTATCAATAC ATATCATTCG CTATTAAGAG 42711 |||||||||| | |||||||| |||||||| | || |||||| ||||||||| |||||||||| ACAATTAAGC ATATAGCAGG GTTTACAATA CTACCAATAC ATATCATTCT CTATTAAGAG 467 TTTACTACGA ATATCGTAAG AGAAACCATA ACCTACCTCC ACCGAAGACT AATGATCAA 42652 ||||||| || | | | | | | |||||||| |||||||||| |||||||| | | ||||||| TTTACTATGA A-A--GCATG A-AAACCATA ACCTACCTCC ACCGAAGATT AGTGATCAA 522 hqPGS_C09HBa0278J12.1-_SGN-E347579- (43187 43084,43038 43007,42967 42652) ******************************************************************************** EST sequence 85 -strand 515 n (File: SGN-E242359-) 1 AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 61 TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 121 ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 181 ATTTATTCCC CTCGTGTCCT TACGTGACAC TCCACTCCTC AATATACTAT CCTGGCACCG 241 GAACGTGGCA CCCGATCCAT ATTCTATCCT GGTGTCAGAA CGTGACACCC GATCCATATT 301 CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATTCTA TCCTGGTACC GGAACGTGGC 361 ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACACC CGATCCATAT TCTATCCTGG 421 TACCGGAACG TGGCACCCGA TCCCCTAATC TCACCACTTT CGTTCATCAA GCCTTCTTTT 481 ATACCAAGGC ATCATTATTA ACAAAGTAGA TTAGG Predicted gene structure (within gDNA segment 46882 to 41078): Exon 1 43497 43277 ( 221 n); cDNA 1 221 ( 221 n); score: 0.851 Intron 1 43276 43238 ( 39 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.94) Exon 2 43237 43171 ( 67 n); cDNA 222 288 ( 67 n); score: 0.940 Intron 2 43170 43131 ( 40 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.92) Exon 3 43130 42966 ( 165 n); cDNA 289 447 ( 159 n); score: 0.933 Intron 3 42965 42915 ( 51 n); Pd: 0.900 (s: 0.92), Pa: 0.000 (s: 0.84) Exon 4 42914 42848 ( 67 n); cDNA 448 515 ( 68 n); score: 0.843 MATCH C09HBa0278J12.1- SGN-E242359- 0.887 520 1.010 C PGS_C09HBa0278J12.1-_SGN-E242359- (43497 43277,43237 43171,43130 42966,42914 42848) Alignment (genomic DNA sequence = upper lines): AGTATATACC AAGTAATATC ATAAAATCAA CTATGATACT CAACATGTAG CATTTACAAT 43438 ||||| || ||| |||||| ||||||| || ||| || || | |||| || ||||| |||| AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 60 TACCATAACC CTTGGTTACA ACACCAAGCT CGTCAATGAG GACTCACGCC TCCTCATCAT 43378 |||||||||| ||||||| || |||||||| | |||||||| ||||||| || |||||||||| TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 120 ACTCATTTGG GATTTAGGTT CATTAGATTG AGTATATTAA CATCTTTCAG GATTCATTAT 43318 ||| |||||| || || ||| |||| ||||| |||||||| ||| ||||| ||||||| || ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 180 CTTTATTTCT CTCGTGTCGG TACGTGACAC TCCGCTCCTC ATATACTATC CTGGTGTCGG 43258 |||||| | |||||||| |||||||||| ||| |||||| | ATTTATTCCC CTCGTGTCCT TACGTGACAC TCCACTCCTC A......... .......... 221 AACGTGACAC TCCGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC GCAATCCATA 43198 |||||||||| |||| ||||| |||||||||| | ||||||| .......... .......... ATATACTATC CTGGCACCGG AACGTGGCAC CCGATCCATA 261 TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TACTATCCTG GTACCGGAAC 43138 |||||||||| ||||| |||| ||||||| TTCTATCCTG GTGTCAGAAC GTGACAC... .......... .......... .......... 288 GTGGCACCCG ATCCATATTC TATTCTGGTG TCGGAACGTG ACACTCCGAT CCTCATATAC 43078 ||| |||||||||| ||| |||||| |||||||||| |||| ||||| | ||||| | .......CCG ATCCATATTC TATCCTGGTG TCGGAACGTG ACAC-CCGAT -C-CATATTC 338 TATCATGGTA CCGGAACGTG GCACCCGATC CATATTCTAT CCTGGTGTCG GAACGTGACA 43018 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTGGTA CCGGAACGTG GCACCCGATC CATATTCTAT CCTGGTGTCG GAACGTGACA 398 CTCCGATCCT CATATACTAT CCTGGTACCG GAACGTGGTA CCCGATCCCC TAATCTCCTT 42958 | ||||| | ||||| |||| |||||||||| |||||||| | |||||||||| || C-CCGAT-C- CATATTCTAT CCTGGTACCG GAACGTGGCA CCCGATCCCC TA........ 447 CTATCAATTC ATCAAGCCTT CTTTCTTACC AAAGACATCA TCAATCTCAT TATTTTAGTT 42898 |||||| | ||| ||| .......... .......... .......... .......... ...ATCTCAC CACTTTCGTT 464 CATTACGCCT TCTTTTATAC CAAGGCCTCA TCATTAACAA AG-AGATTAG G 42848 ||| | |||| |||||||||| |||||| ||| | |||||||| || ||||||| | CATCAAGCCT TCTTTTATAC CAAGGCATCA TTATTAACAA AGTAGATTAG G 515 hqPGS_C09HBa0278J12.1-_SGN-E242359- (43497 43277,43237 43171,43130 42966,42914 42848) ******************************************************************************** EST sequence 286 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 45493 to 38259): Exon 1 43729 43313 ( 417 n); cDNA 1 417 ( 417 n); score: 0.826 Intron 1 43312 43196 ( 117 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.82) Exon 2 43195 42966 ( 230 n); cDNA 418 629 ( 212 n); score: 0.726 Intron 2 42965 42915 ( 51 n); Pd: 0.900 (s: 0.74), Pa: 0.000 (s: 0.88) Exon 3 42914 42858 ( 57 n); cDNA 630 686 ( 57 n); score: 0.895 MATCH C09HBa0278J12.1- SGN-E241789+ 0.799 704 1.026 C PGS_C09HBa0278J12.1-_SGN-E241789+ (43729 43313,43195 42966,42914 42858) Alignment (genomic DNA sequence = upper lines): ATGCCAGAAC TTCAAGG-CA TCAAGACATG AA-GAG-GAA GATCCAGTCC AAGCTAGAAG 43673 ||| | || | ||||||| || |||||||||| || ||| || ||||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CATTAGCTCA CCCTGATATC CGGAGTAGTG AAGACTGGCT AGAGTTACTG TTGAGTCGAA 43613 || ||||||| |||||| ||| | || || |||||||| | |||||| | | |||||| ||| CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 120 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAAGAA GAAAACATAA AAGTAGGGGG 43553 || ||||| | |||||||||| ||||||||| ||||||| || |||||||||| ||||| |||| GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAA-AA GAAAACATAA AAGTA-GGGG 178 TCAGTACAAA CACAAGTACT GAGTAGGTAT CATCGGCCAA CTCAAAATAG AAAACAGTAT 43493 |||||||||| ||| |||||| |||||| ||| |||||||||| |||| ||||| | |||| ||| TCAGTACAAA CACGAGTACT GAGTAGATAT CATCGGCCAA CTCAGAATAG AGAACAATAT 238 ATACCAAGTA ATATCATAAA ATCAACTATG ATACTCAACA TGTAGCATTT ACAATTACCA 43433 ||| ||| || ||| ||||| |||||| || | ||| |||| || || |||| ||||| ATATCAAATA ATAAAATAAA ATCAACCATA ACACTTAACA GGTGACAACA ACAAGTACCA 298 TAACCCTTGG TTACAACACC AAGCTCGTCA ATGAGGACTC ACGCCTCCTC ATCATACTCA 43373 ||||| |||| ||||| || ||| | || |||||||||| | |||||| | | |||||||| TAACCATTGG GCACAAC-CC AAGAACATCT ATGAGGACTC AAGCCTCCAC ACCATACTCA 357 TTTGGGATTT AGGTTCATTA GATTGAGTAT ATTAACATCT TTCAGGATTC ATTATCTTTA 43313 ||||||| |||||||||| |||||||| |||||||| |||| ||||| ||| | |||| TTTGGGAAAC AGGTTCATTA AATTGAGTAC ATTAACATAA TTCAAGATTC ATTCTTTTTA 417 TTTCTCTCGT GTCGGTACGT GACACTCCGC TCCTCATATA CTATCCTGGT GTCGGAACGT 43253 .......... .......... .......... .......... .......... .......... 417 GACACTCCGA TCCTCATATA CTATCCTGGT ACCGGAACGT GGCACGCAAT CCATATTCTA 43193 ||| .......... .......... .......... .......... .......... .......CTA 420 TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATATACTA TCCTGGTACC GGAACGTGGC 43133 || ||||||| ||||||||| |||||||||| | || ||| | | || | || |||| | TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA -CGT-GT--C GGTTCGTGAC 476 ACCCGATCCA TATTCTATTC TGGTGTCGGA ACGTGACACT CCGATCCTCA TATACTATCA 43073 ||||||||| | || | ||||||| ||| |||| ||||| ||| || | || | ACCCGATCC- CCTAATACT- ACGTGTCGGT TCGTTACAC- CCGAT-CTCC TA-A-TA-CT 529 TGGTACCGGA ACGTGGCACC CGATCCATAT TCTATCCTGG TGTCGGAACG TGACACTCCG 43013 || ||| |||| |||| |||||||| | || | | |||||| || |||||| ||| ACGTGCCGAT TCGTGACACC CGATCCAT-T AATA-CTATG TGTCGGTTCG TGACAC-CCG 586 ATCCTCATAT ACTATCCTGG TACCGGAACG TGGTACCCGA TCCCCTAATC TCCTTCTATC 42953 |||| || |||| | | | | ||| || || |||||| ||||||| ATCCATTAAT ACTA-CGT-G T--CGGTTCG TGACACCCGA TCCCCTA... .......... 629 AATTCATCAA GCCTTCTTTC TTACCAAAGA CATCATCAAT CTCATTATTT TAGTTCATTA 42893 | |||||| ||| |||||||| | .......... .......... .......... ........AC CTCATTCTTT TAGTTCATCA 651 CGCCTTCTTT TATACCAAGG CCTCATCATT AACAA 42858 ||||||||| ||||||||| | |||||||| ||||| AGCCTTCTTT TATACCAAGA CATCATCATT AACAA 686 hqPGS_C09HBa0278J12.1-_SGN-E241789+ (43729 43313,43195 42966,42914 42858) ******************************************************************************** EST sequence 317 +strand 454 n (File: SGN-E396070+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCGGGGGGGG 421 GAGTTTCTAA TTGTTTTGAA ACTAGACTCC TCGA Predicted gene structure (within gDNA segment 43201 to 38280): Exon 1 42601 42290 ( 312 n); cDNA 1 310 ( 310 n); score: 0.864 Intron 1 42289 42188 ( 102 n); Pd: 0.900 (s: 0.76), Pa: 0.000 (s: 0.52) Exon 2 42187 42043 ( 145 n); cDNA 311 454 ( 144 n); score: 0.652 MATCH C09HBa0278J12.1- SGN-E396070+ 0.796 457 1.007 C PGS_C09HBa0278J12.1-_SGN-E396070+ (42601 42290,42187 42043) Alignment (genomic DNA sequence = upper lines): ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCTTTCTT 42542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AATGTGGCAA TAATAACCCA TTAATTAACT 42482 |||||||||| |||||||||| |||||||||| || ||| || |||||||||| ||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAAGGTTACC TCTTTTAACC CCCAAGAAAT T-TAGTCATT AATATAAACC CACGAAATAT 42423 ||||||||| |||||||||| |||| | ||| | | | ||| || ||||||| ||| || | | CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTATAG CAGGAATAGT CCAAAACGCC CCTTTAAAAC TTAACCAGAA ATCTGACTCC 42363 ||||||| || ||||||||| |||||||| | || ||||||| | |||| ||| ||| | ATAATTAAAG TAGGAATAGT CCAAAACGTC CC-TTAAAAC GTGTAAAGAA ATCCGACCCA 238 GACTGGGATT ACGCAACCTG TGACGGCCCG TCGCGCCTGC GACGGTTCGT CATGCAGGTT 42303 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||| ||| | |||||| | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGG-T 297 CGTCAGAGAC TCGATTTCCT TAAGGAGTCT GTGACGGCCC GTCGTACCTA CGACGGTCCG 42243 |||| | | CGTCGCAAGG TTC....... .......... .......... .......... .......... 310 TCCTGCACTT CCGTCACGAC GTTCAGAGAA TCGTTCCCTG TACCAAATTC TCAAGAGTTG 42183 || | .......... .......... .......... .......... .......... .....AG-AG 314 AAGTGTTTTG AAACGGTGGA TC-ACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA 42124 | ||| | | | || ||||| | |||| || | |||||||| ||||| ||| ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC 374 GGTCCGTCAC AGAGTTCAGA GAGTCGATTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT 42064 ||||| || |||||||| |||||||||| | || || | |||||| ||| ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCGG GGGGGGGAGT TTCTAATTGT 434 TTTGGGACGA GACACCCTCG A 42043 |||| || | ||| ||||| | TTTGAAACTA GAC-TCCTCG A 454 hqPGS_C09HBa0278J12.1-_SGN-E396070+ (42601 42290) ******************************************************************************** EST sequence 5 -strand 731 n (File: SGN-E578076-) 1 GCATCATCAA TCCCATTATT TTAGTTCATC ACGCCTTCTT TTATACCAAG GCCTCATTAT 61 GAACAAAGAG ATTAAGATTT TGCAAGATTT GGGATTCAAT AACTTCATCA TGCTTATATA 121 ATCACAATTA TATAGTTACA TTCATGCAAG CATACAATTA AGCACATAGC AGGGTTTACA 181 ATATTATCAA TACATATCAT TCTCTATTAA GAGTTTACTA CGAATATCGT AAGAGAAACC 241 ATAACCTACC TCCACCGAAG AATTGCGATC AACAAGTTAT CTTCTCAAAA TCCTTGCTAT 301 CCTCTTCGTT TCTCTTTCTT TTTCTGTTTT CTCTTTGTTC TTTCTATTTT TCTTATTCAA 361 ACGTCCTAAC GAGCAAAACA GAGAACAAAA CAACCCTAAA AATTTCAACT TTTTTCGGTT 421 TCCCGACTTC CAATTTACCA GAGATATAGA TAATTCACTG AAATTGAACA AGGGTTAAGA 481 GCAGAAGAAA TTTACGTTGT GATTAATTGG GGCAAAGCGT CGAACAGTTG AACTGCAAAT 541 TTGTTCTTCA GTTATAGATA CAAAAGATAG AGTCTTATAT GAGTTAAAGA AGACGTAGAG 601 TATACCCTAG TAAGCGAGCT GACCACGGCG GAATGAGGTG GTGAGTTGGT GGGTTTCGTC 661 GGTCAACCAA GAAATGAAAA GGAAATTGAA GTATGAAAAA CTACAGAAAA ATGACGCGTT 721 TGGCCGAGAA A Predicted gene structure (within gDNA segment 43650 to 37363): Exon 1 42922 42577 ( 346 n); cDNA 2 345 ( 344 n); score: 0.879 MATCH C09HBa0278J12.1- SGN-E578076- 0.879 346 0.473 C PGS_C09HBa0278J12.1-_SGN-E578076- (42922 42577) Alignment (genomic DNA sequence = upper lines): CATCATCAAT CTCATTATTT TAGTTCATTA CGCCTTCTTT TATACCAAGG CCTCATCATT 42863 |||||||||| | |||||||| |||||||| | |||||||||| |||||||||| |||||| || CATCATCAAT CCCATTATTT TAGTTCATCA CGCCTTCTTT TATACCAAGG CCTCATTATG 61 AACAAAGAGA TTAGGGTTTT TCAAGATTTG GGATTCAATA ACTTCATCAT GCTTATATAA 42803 |||||||||| ||| | |||| ||||||||| |||||||||| |||||||||| |||||||||| AACAAAGAGA TTAAGATTTT GCAAGATTTG GGATTCAATA ACTTCATCAT GCTTATATAA 121 TCACAATTAT ATAATTACAT TCATGCAAGC ATACAATTAA GCACATAGCA GGGTTTACAA 42743 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATTAT ATAGTTACAT TCATGCAAGC ATACAATTAA GCACATAGCA GGGTTTACAA 181 CATTATCAAT ACATATCATT CGCTATTAAG AGTTTACTAC GAATATCGTA AGAGAAACCA 42683 ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TATTATCAAT ACATATCATT CTCTATTAAG AGTTTACTAC GAATATCGTA AGAGAAACCA 241 TAACCTACCT CCACCGAAGA CTAATGATCA AGCAAG-AAT TTTC-CAAAG CCTTGTGTTT 42625 |||||||||| |||||||||| | ||||| | |||| || ||| |||| | | || | TAACCTACCT CCACCGAAGA ATTGCGATCA A-CAAGTTAT CTTCTCAAAA TCCT-TG-CT 298 TTCCTCTTCG TTCGTCTCTC TCTATCGATT CTCCTTCTCT CTCTTTCT 42577 ||||||||| || ||| || | | || || || | | | ||||||| ATCCTCTTCG TTTCTCTTTC TTTTTCTGTT TTCTCTTTGT -TCTTTCT 345 hqPGS_C09HBa0278J12.1-_SGN-E578076- (42922 42577) ******************************************************************************** EST sequence 167 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 45622 to 39992): Exon 1 44825 44776 ( 50 n); cDNA 136 182 ( 47 n); score: 0.600 Intron 1 44775 43864 ( 912 n); Pd: 0.340 (s: 0.60), Pa: 0.000 (s: 0.70) Exon 2 43863 43606 ( 258 n); cDNA 183 438 ( 256 n); score: 0.835 Intron 2 43605 43328 ( 278 n); Pd: 0.999 (s: 0.86), Pa: 0.854 (s: 0) Exon 3 43327 43300 ( 28 n); cDNA 439 462 ( 24 n); score: 0.643 PPA cDNA 13 1 MATCH C09HBa0278J12.1- SGN-E370357+ 0.797 336 0.495 C PGS_C09HBa0278J12.1-_SGN-E370357+ (44825 44776,43863 43606,43327 43300) Alignment (genomic DNA sequence = upper lines): ATGATCATAT AAAAGAGCAT AAGATCAAAA ATAATGATAC TCGAAATAAA GTGATAATGA 44766 |||| || | || || |||| ||| | || || | |||| || ATGACGGAAT ATAA-TGCGG AAGACTTAAA CTCAT--TAA TGAAAATCAA .......... 182 TTTTTATGAT AGAATTAATA GAAGTGATAG TGTTTTTTTT TCCAGAAAGA AGTGATAGTT 44706 .......... .......... .......... .......... .......... .......... 182 TAGAAACGTA GAATTAATGA CTTTCACATT ATATATTTTT AATCTTGAAG TAGCTAAGAT 44646 .......... .......... .......... .......... .......... .......... 182 TATTCAAGAA AATTAGGATG TCACACTACT CAAATTCAAC AGGCGATTAA CTATCTCGAC 44586 .......... .......... .......... .......... .......... .......... 182 TAAAGGCCTG TTTGGCTATG CAATATAGAA TCATGATTAT CATCATATGA TATCATAATA 44526 .......... .......... .......... .......... .......... .......... 182 TGAAATTCTC AAATGAAACG AAAGTTTTGT TTGGACATGC GATATGAAAT TTTTGTGTTG 44466 .......... .......... .......... .......... .......... .......... 182 TATAATTTCT TGTAAAACAT AAGAATCTCA CAAGTTGTAA AAATATTAAA ATAGCCTCAA 44406 .......... .......... .......... .......... .......... .......... 182 TTGTTTATTC AATCTTAACA AATAAACAAA CATTTATAAA ATCGAATACT AAATTACTAA 44346 .......... .......... .......... .......... .......... .......... 182 AAAGCTATTT ATTCTCCACT TAAGTAATTG TTTCATCAAA TTTAATTCAA CAAAAGAATT 44286 .......... .......... .......... .......... .......... .......... 182 GATCATAAAT TATAGTGAAC TAGTCTTTAA TATAATTCTC CCACGTAATA CATACAATCT 44226 .......... .......... .......... .......... .......... .......... 182 CCTCATGTTG AACTGGAATT TCTTGATCAT ATGACTGAAA CGATCAATCA AAATTGTTAC 44166 .......... .......... .......... .......... .......... .......... 182 TTTGAGTCAT TTGTTGGTAT GCAATTATAT TTTCATGCTC ATAGACAATA AATATTCCAT 44106 .......... .......... .......... .......... .......... .......... 182 CATTCCTTTA ATATTCTCGC AAATAATTAT GTAACGTTGC ACAAGTCAAG ATACTTTCAG 44046 .......... .......... .......... .......... .......... .......... 182 TTGTGTGTCA ATATAATAAT GGTTCATTCC TTGTTTCAGT ATTATGAATC TATTTTTCCA 43986 .......... .......... .......... .......... .......... .......... 182 AGCTGTCACG ACCCAAATCG GGCCACGACT AGCACCCACA CTTACCCTCC TGTGTGAGCG 43926 .......... .......... .......... .......... .......... .......... 182 AACCAACCAA ATCTAAATCT TAACATTTCA ATGTACTATC AACATAAAGT AATGCGGAAG 43866 .......... .......... .......... .......... .......... .......... 182 ACTTAAACTC ATTAATAAAA ACCAATTCAA TAACTATTAT TTCTCAAAAT CTGGAAGTCA 43806 ||||| | | | ||||| || | ||| | ||||| | | |||||| |||||||||| ..TTAAA-TA ACTTCTAAAA ACTCA-ACAA CTATTATTA- TCCCCAAAAT CTGGAAGTCA 237 TCATCACAAG AACATCTAGT C-CAAATTAC TAAATCTAAG AGTTTCTAAG AAGCAAAAAA 43747 |||||||||| |||||||| | |||||||| ||| |||||| ||| |||| |||| | || TCATCACAAG AACATCTATC CTCAAATTAC TAATTCTAAG AGTATCTAGA AAGCTAGAAT 297 TACATGAAAG CTAGTCCATG CCAGAACTTC AAGGCATCAA GACATGAAGA GGAAGATCCA 43687 || |||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| AACTAAAAAG CTAGTCCATG CCGGAACTTC AAGGCATCAA GACATGAAGA AGAAGATCCA 357 GTCCAAGCTA GAAGCATTAG CTCACCCTGA TATCCGGAGT AGTGAAGACT GGCTAGAGTT 43627 |||||||||| ||||| |||| ||||| |||| |||||| | | |||||||| |||||||||| GTCCAAGCTA GAAGCGTTAG CTCACACTGA AATCCGGTAT AATGAAGACT GGCTAGAGTT 417 ACTGTTGAGT CGAAGATGAC GGCACGTTTG CTGCACTCCA CAAATAACAA AGAAGAAAAC 43567 | ||||||| ||||| ||| | GCGGTTGAGT TGAAGACGAC G......... .......... .......... .......... 438 ATAAAAGTAG GGGGTCAGTA CAAACACAAG TACTGAGTAG GTATCATCGG CCAACTCAAA 43507 .......... .......... .......... .......... .......... .......... 438 ATAGAAAACA GTATATACCA AGTAATATCA TAAAATCAAC TATGATACTC AACATGTAGC 43447 .......... .......... .......... .......... .......... .......... 438 ATTTACAATT ACCATAACCC TTGGTTACAA CACCAAGCTC GTCAATGAGG ACTCACGCCT 43387 .......... .......... .......... .......... .......... .......... 438 CCTCATCATA CTCATTTGGG ATTTAGGTTC ATTAGATTGA GTATATTAAC ATCTTTCAGG 43327 | .......... .......... .......... .......... .......... .........G 439 ATTCATTATC TTTATTTCTC TCGTGTC 43300 | | || | |||| | || ||||| -TACGTTTGC TTTA--T-TC GAGTGTC 462 hqPGS_C09HBa0278J12.1-_SGN-E370357+ (43863 43606,43327 43300) ******************************************************************************** EST sequence 144 -strand 717 n (File: SGN-E349726-) 1 TTATGTTCAT TAGATTGAGT ATATAACATC TTTCAAGATT CATTGTCTTT ATTTCTCTTG 61 TGTCGGTACG TGACATTCCG CTCCNTCATA TTCATTAATC TTCTTGTGTC GGTACGTGAT 121 ACTCTGATCC CCTAAATCTA CGTGTCGGAA CGTGACACTC CGATCCCCTA AATCTACGTG 181 TCGGTTCGTG ACACCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 241 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 301 CGATCCCCTA ATCTATGTGT TGGTTCGTGA CACCTGATCC CTTAATCTAC GTGTCGGTTT 361 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTTCGTGAC ACCCGATCCC CTAATCTCAT 421 TCTATCAATT CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCAATCTCAT TACTTTAGTT 481 CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAAAAA GAGATTAGGT TTTTACAAGA 541 TTTGGGATTC AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC 601 AAGCATACAA TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT 661 TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGACTA Predicted gene structure (within gDNA segment 47588 to 42060): Exon 1 43324 42660 ( 665 n); cDNA 86 717 ( 632 n); score: 0.800 MATCH C09HBa0278J12.1- SGN-E349726- 0.800 665 0.927 C PGS_C09HBa0278J12.1-_SGN-E349726- (43324 42660) Alignment (genomic DNA sequence = upper lines): TCATTATCTT TATTTCTCTC GTGTCGGTAC GTGACACTCC GCTCCTCATA TACTATCCTG 43265 |||| || | || | ||| |||||||||| |||| |||| | ||| | || | ||| TCATATTCAT TAATCTTCTT GTGTCGGTAC GTGATACTCT GATCC-CCTA -A--ATCTAC 141 GTGTCGGAAC GTGACACTCC GATCCTCATA TACTATCCTG GTACCGGAAC GTGGCACGCA 43205 |||||||||| |||||||||| ||||| | || | ||| || ||| | ||| ||| GTGTCGGAAC GTGACACTCC GATCC-CCTA -A--ATCTAC GTGTCGGTTC GTGACACCTG 197 ATCCATATTC TATCCTGGTG TCGGAACGTG ACACTCCGAT CCTCATATAC TATCCTGGTA 43145 |||| | ||| ||| |||| |||| |||| ||||| || | || | ||| || ATCC--CCTA AATCTACGTG TCGGTTCGTG ACAC-CCGAT CC-CCTA-A- -ATCTACGTG 250 CCGGAACGTG GCACCCGATC CATATTCTAT TCTGGTGTCG GAACGTGACA CTCCGATCCT 43085 ||| |||| ||||||||| | | || |||||| | ||||||| | ||||||| TCGGTTCGTG ACACCCGATC C--CCTAAAT CTACGTGTCG GTTCGTGACA C-CCGATCC- 306 CATATACTAT CATGGTACCG GAACGTGGCA CCCGATCCAT ATTCTATCCT GGTGTCGGAA 43025 | || | | | || || | | |||| || || ||||| || ||| ||||||| CCTA-A-TCT -AT-GTGTTG GTTCGTGACA CCTGATCC-- CTT-AATCTA CGTGTCGGTT 359 CGTGACACTC CGATCCTCAT ATACTATCCT GGTACCGGAA CGTGGTACCC GATCCCCTAA 42965 ||||||| | |||||| | || ||| | | || | | |||| |||| |||||||||| TGTGACAC-C CGATCCCCTA ATTCTA-CGT -GT--CAGTT CGTGACACCC GATCCCCTAA 414 TCTCCTTCTA TCAATTCATC AAGCCTTCTT TCTTACCAAA GACATCATCA ATCTCATTAT 42905 |||| ||||| |||||||||| ||||||||| |||||| || | |||||||| ||||||||| TCTCATTCTA TCAATTCATC AAGCCTTCTC CCTTACC-AA GGCATCATCA ATCTCATTAC 473 TTTAGTTCAT TACGCCTTCT TTTATACCAA GGCCTCATCA TTAACAAAGA GATTAGGGTT 42845 |||||||||| | ||||||| |||||| ||| |||||| |||| ||||| ||||||| || TTTAGTTCAT CAAGCCTTCT CCCTTACCAA GGCATCATCA TTAA-AAAGA GATTAGGTTT 532 TTTCAAGATT TGGGATTCAA TAACTTCATC ATGCTTATAT AATCACAATT ATATAATTAC 42785 || ||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||| |||| TTACAAGATT TGGGATTCAA TAACTTCATC ATGCTTATAT AATAACAATT ATATAGTTAC 592 ATTCATGCAA GCATACAATT AAGCACATAG CAGGGTTTAC AACATTATCA ATACATATCA 42725 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ATTCATGCAA GCATACAATT AAGCACATAG CAGGGTTTAC AATATTATCA ATACATATCA 652 TTCGCTATTA AGAGTTTACT ACGAATATCG TAAGAGAAAC CATAACCTAC CTCCACCGAA 42665 ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTCTCTATTA AGAGTTTACT ACGAATATCG TAAGAGAAAC AATAACCTAC CTCCACCGAA 712 GACTA 42660 ||||| GACTA 717 hqPGS_C09HBa0278J12.1-_SGN-E349726- (43324 42660) ******************************************************************************** EST sequence 128 -strand 402 n (File: SGN-E357559-) 1 TGTGTTGGTT CGTGACACCT GATCCCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 61 CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 121 AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 181 CTTACCAAGG CATCATCATT AAAAAGAGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA 241 CTTCATCATG CTTATATAAT AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG 301 CACATAGCAG GGTTTACAAT ATTATCAATA CATATCATTC TCTATTAAGA GTTTACTACG 361 AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGAC TA Predicted gene structure (within gDNA segment 44438 to 42060): Exon 1 42983 42660 ( 324 n); cDNA 81 402 ( 322 n); score: 0.929 MATCH C09HBa0278J12.1- SGN-E357559- 0.929 324 0.806 C PGS_C09HBa0278J12.1-_SGN-E357559- (42983 42660) Alignment (genomic DNA sequence = upper lines): GTGGTACCCG ATCCCCTAAT CTCCTTCTAT CAATTCATCA AGCCTTCTTT CTTACCAAAG 42924 ||| ||||| |||||||||| ||| |||||| |||||||||| |||||||| ||||||| || GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA AGCCTTCTCC CTTACCA-AG 139 ACATCATCAA TCTCATTATT TTAGTTCATT ACGCCTTCTT TTATACCAAG GCCTCATCAT 42864 ||||||||| |||||||| | ||||||||| | ||||||| ||||||| || ||||||| GCATCATCAA TCTCATTACT TTAGTTCATC AAGCCTTCTC CCTTACCAAG GCATCATCAT 199 TAACAAAGAG ATTAGGGTTT TTCAAGATTT GGGATTCAAT AACTTCATCA TGCTTATATA 42804 ||| |||||| |||||| ||| | |||||||| |||||||||| |||||||||| |||||||||| TAA-AAAGAG ATTAGGTTTT TACAAGATTT GGGATTCAAT AACTTCATCA TGCTTATATA 258 ATCACAATTA TATAATTACA TTCATGCAAG CATACAATTA AGCACATAGC AGGGTTTACA 42744 || ||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACAATTA TATAGTTACA TTCATGCAAG CATACAATTA AGCACATAGC AGGGTTTACA 318 ACATTATCAA TACATATCAT TCGCTATTAA GAGTTTACTA CGAATATCGT AAGAGAAACC 42684 | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| ATATTATCAA TACATATCAT TCTCTATTAA GAGTTTACTA CGAATATCGT AAGAGAAACA 378 ATAACCTACC TCCACCGAAG ACTA 42660 |||||||||| |||||||||| |||| ATAACCTACC TCCACCGAAG ACTA 402 hqPGS_C09HBa0278J12.1-_SGN-E357559- (42983 42660) ******************************************************************************** EST sequence 430 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 44941 to 42203): Exon 1 43831 43138 ( 694 n); cDNA 44 730 ( 687 n); score: 0.844 PPA cDNA 18 1 MATCH C09HBa0278J12.1- SGN-E546506+ 0.844 694 0.951 C PGS_C09HBa0278J12.1-_SGN-E546506+ (43831 43138) Alignment (genomic DNA sequence = upper lines): TATTATTTCT CAAAATCTGG AAGTCATCAT CACAAGAACA TCTAGTCCAA ATTACTAAAT 43772 ||||| | | |||||||||| |||||||||| |||||||||| |||| ||| |||||| || TATTA-TCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCTCAA ATTACTTAA- 101 CTAAGAGTTT CTAAGAAGCA AAAAATACAT GAAAGCTAGT CCATGCCAGA ACTTCAAGGC 43712 ||| || | | ||||||| || ||| | || ||||||||| ||||||| || | |||||||| CTAGGAATGT CTAAGAA-CA AAATA-ACTA AAAAGCTAGT CCATGCCGGA AATTCAAGGC 159 ATCAAGACAT GAAGAGGAAG ATCCAGTCCA AGCTAGAAGC ATTAGCTCAC CCTG-A-TAT 43654 |||||||| | ||||| |||| | |||||||| ||||||| || |||||||||| |||| | | | ATCAAGACTT GAAGAAGAAG ACCCAGTCCA AGCTAGACGC ATTAGCTCAC CCTGAATTTT 219 CCGGAGTAGT GAAGACTGGC TAGAGTTACT GTTGAGTCGA AGATGACGGC ACGTTTGCTG 43594 ||| | ||| |||||||||| |||| |||| ||||||| || || |||||| |||||||||| CCGATGAAGT GAAGACTGGC TAGATCTACT GTTGAGTTGA AGTTGACGGA ACGTTTGCTG 279 CACTCCACAA ATAACAAAGA AGAAAACATA AAAGTAGGGG GTCAGTACAA ACACAAGTAC 43534 || | ||||| |||||||||| |||||||| |||||| ||| |||||||||| |||| |||| CATTACACAA ATAACAAAGA GGAAAACATG AAAGTA-GGG GTCAGTACAA CCACACGTAC 338 TGAGTAGGTA TCATCGGCCA ACTCAAAATA GAAAACAGTA TATACCAAGT AATATCATAA 43474 ||||||| || |||||||||| |||||||||| | ||||||| |||| ||| | |||| | | TGAGTAGATA TCATCGGCCA ACTCAAAATA GGGAACAGTA TATATCAA-T AATAATGT-A 396 AATCAACTAT GATACTCAAC ATGTAGCATT TACAATTACC ATAACCCTTG GTTACAAC-A 43415 ||||||||| ||||||||| |||||||| | || | | | | | | | || || | AATCAACTAC AATACTCAAC ATGTAGCAAT AAC-ACCATG A-ATTCATCA ATAACTACAA 454 CCAAGCTCGT CAATGAGGAC TCACGCCTCC TCATCATACT CATTTGGGAT TTAGGTTCAT 43355 || || || |||||||| ||| ||||| | |||||| ||||||||| ||| |||||| CCGAGTTCAC ACATGAGGAC TCAAGCCTCA ATACCATACT CATTTGGGAA TTAAGTTCAT 514 TAGATTGAGT ATATT-AACA TCTTTCAGGA TTCATTATCT TTATTTCTCT CGTGTCGGTA 43296 |||||||||| ||||| | | ||||||| || |||||||||| || || |||| ||||||||| TAGATTGAGT ATATTCATTA TCTTTCAAGA TTCATTATCT TTCTTCCTCT TGTGTCGGTA 574 CGTGACACTC CGCTCCTCAT ATACTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT 43236 |||||||||| || ||||| | ||||||| |||| ||||| |||| ||||| |||||||||| CGTGACACTC CGATCCTCTA TTTCTATCCT GGTGCCGGAA CGTGGCACTC CGATCCTCAT 634 ATACTATCCT GGTACCGGAA CGTGGCACGC AATCCATATT CTATCCTGGT GTCGGAACGT 43176 | ||||||| |||||||||| |||||||| | |||||| || |||||||||| |||||||||| -T-CTATCCT GGTACCGGAA CGTGGCACCC GATCCATTTT CTATCCTGGT GTCGGAACGT 692 GACACTCCGA TCCTCATATA CTATCCTGGT ACCGGAAC 43138 |||||||||| ||||||||| |||||||||| |||||||| GACACTCCGA TCCTCATATT CTATCCTGGT ACCGGAAC 730 hqPGS_C09HBa0278J12.1-_SGN-E546506+ (43831 43138) ******************************************************************************** EST sequence 119 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 44297 to 41970): Exon 1 43687 43280 ( 408 n); cDNA 1 410 ( 410 n); score: 0.848 MATCH C09HBa0278J12.1- SGN-E246710- 0.848 408 0.848 C PGS_C09HBa0278J12.1-_SGN-E246710- (43687 43280) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCATTA GCTCACCCTG -ATATCCGGA GTAGTGAAGA CTGGCTAGAG 43629 |||||||||| |||||||||| |||||||||| || |||| ||||| |||| |||||| || AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGT-AAGA CTGGCTTGAA 59 TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC CACAAATAAC AAAGAAGAAA 43569 |||||||||| || ||| | | | |||||||| |||||||||| ||||||||| ||||||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAGAGA 119 ACATAAAAGT AGGGGGTCAG TAC-AAACAC AAGTACTGAG TAGGTATCAT CGGCCAACTC 43510 |||||||||| | |||||||| ||| |||||| |||||||| ||| |||||| |||||||||| ACATAAAAGT A-GGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 178 AAAATAGAAA AC-A-GTATA TACCAAGTAA TATCATAAAA TCAACTATGA TACTCAACAT 43452 |||||||||| | | |||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAGAAA TCAATATATA TACCAAGTAA TATCATAAAA TCAACTATGA TACTCAACAT 238 GTAGCATTTA CAATTACCAT AACCCTTGGT TACAACACCA AGCTCGTCAA TGAGGACTCA 43392 |||||| | ||| ||| || | | | | | || || || | |||||||||| GTAGCAACAA CAAATACTAT ATCATTAACA ATTACCGTCA AGTTCACACA TGAGGACTCA 298 CGCCTCCTCA TCATACTCAT TTGGGATTTA GGTTCATTAG ATTGAGTATA TTAACATCTT 43332 ||||| | ||||||||| |||||| | | ||||||||| |||||||||| |||||||||| AGCCTCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACATCTT 358 TCAGGATTCA TTATCTTTAT TTCTCTCGTG TCGGTACGTG ACACTCCGCT CC 43280 ||| |||||| |||||||||| |||||| ||| |||||||||| |||||||||| || TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CC 410 hqPGS_C09HBa0278J12.1-_SGN-E246710- (43687 43280) ******************************************************************************** EST sequence 409 +strand 337 n (File: SGN-E357033+) 1 ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 61 AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 121 GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 181 TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 241 CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 301 CCCCTAAATC TACATGACAG TTTCATGAAC GCTATCC Predicted gene structure (within gDNA segment 44306 to 41626): Exon 1 43535 43280 ( 256 n); cDNA 1 256 ( 256 n); score: 0.812 MATCH C09HBa0278J12.1- SGN-E357033+ 0.812 256 0.760 C PGS_C09HBa0278J12.1-_SGN-E357033+ (43535 43280) Alignment (genomic DNA sequence = upper lines): ACTGAGTAGG TATCATCGGC CAACTCAAAA TAGAAAACAG TATATACCAA GTAATATCAT 43476 ||||| ||| |||||||| | |||||||||| |||||| || |||||| ||| | | |||||| ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 60 AAAATCAACT ATGATACTCA ACATGTAGCA TTTACAATTA CCATAACCCT TGGTTACAAC 43416 |||||||||| |||||||||| |||||||||| |||| | | ||| | | | | AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 120 ACCAAGCTCG TCAATGAGGA CTCACGCCTC CTCATCATAC TCATTTGGGA TTTAGGTTCA 43356 || | || ||||||| |||| ||||| | ||||| |||||||||| | | ||||| GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 180 TTAGATTGAG TATATTAACA TCTTTCAGGA TTCATTATCT TTATTTCTCT CGTGTCGGTA 43296 ||||||| || |||||||||| ||||||| || |||||||||| |||||||||| ||| ||| | TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 240 CGTGACACTC CGCTCC 43280 | ||||| || |||||| CATGACATTC CGCTCC 256 hqPGS_C09HBa0278J12.1-_SGN-E357033+ (43535 43280) ******************************************************************************** EST sequence 131 -strand 239 n (File: SGN-E391780-) 1 ATCAACAAAT ACTATATCAT TAACAATTAC CGTCAAGTTC ACACATGAGG ACTCAAGCCT 61 CAATACCATA CTCATTTGGG AATCATGTTC ATTAGATTGA GTATATTAAC ATCTTTCAAG 121 ATTCATTATC TTTATTTCTC TTGTGTCGGT ACGTGACACT CCGCTCCCTC AATATTCATT 181 AATCCTCTTG TGTCGGTACG TGACACTCCG ATCCCCTAAA TCTATATGTC GGTTTGTGA Predicted gene structure (within gDNA segment 44830 to 41960): Exon 1 43402 43280 ( 123 n); cDNA 45 167 ( 123 n); score: 0.919 MATCH C09HBa0278J12.1- SGN-E391780- 0.919 123 0.515 C PGS_C09HBa0278J12.1-_SGN-E391780- (43402 43280) Alignment (genomic DNA sequence = upper lines): ATGAGGACTC ACGCCTCCTC ATCATACTCA TTTGGGATTT AGGTTCATTA GATTGAGTAT 43343 |||||||||| | ||||| | |||||||| ||||||| | | |||||||| |||||||||| ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATC ATGTTCATTA GATTGAGTAT 104 ATTAACATCT TTCAGGATTC ATTATCTTTA TTTCTCTCGT GTCGGTACGT GACACTCCGC 43283 |||||||||| |||| ||||| |||||||||| ||||||| || |||||||||| |||||||||| ATTAACATCT TTCAAGATTC ATTATCTTTA TTTCTCTTGT GTCGGTACGT GACACTCCGC 164 TCC 43280 ||| TCC 167 hqPGS_C09HBa0278J12.1-_SGN-E391780- (43402 43280) ******************************************************************************** EST sequence 78 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 47042 to 42544): Exon 1 43982 43513 ( 470 n); cDNA 246 729 ( 484 n); score: 0.823 MATCH C09HBa0278J12.1- SGN-E351546- 0.823 470 0.645 C PGS_C09HBa0278J12.1-_SGN-E351546- (43982 43513) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATC-GGG CCACGACTAG CACCCACACT TACCCTCCTG TGTGAGCGAA 43924 |||||||||| |||||| ||| || | ||| | |||||||||| ||||||||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 305 CCAACCAAAT CTAAATCTTA ACATTTCAAT GTACTATCAA CATAAAGTAA TGCGGAAGAC 43864 |||||| ||| ||||| |||| |||||||||| ||| || ||| || ||||||| |||||||||| CCAACC-AAT CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC 364 TTAAACTCAT TAATAAAA-- ACCAA-TTC- A--A-TAACT AT-TA-T-TT CTCAAAATCT 43814 |||||||||| |||||||| | || | | | | ||| || || | || | ||||| || TTAAACTCAT TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT 424 GGAAGTCATC ATCACAAGAA CATCTAGTCC AAATTACTAA ATCTAAGAGT TTCTAAGAAG 43754 |||||||||| |||||||||| |||||| | ||| |||||| ||||||||| |||||||||| GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 484 C-AAAAAA-T ACATGA-AAG CTAGTCCATG CCAGAACTTC AAGGCATCAA GACATGAAGA 43697 | |||||| | |||| | ||| |||||||||| || ||| ||| |||||||||| ||||||||| CTAAAAAATT ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG 544 GGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTG- ATATCCGGAG TAGTGAAGAC 43638 ||||||||| |||||||||| ||||| |||| ||||||||| | |||||| | | |||||| AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 604 TGGCTAGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 43578 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATACCA 664 AAGAAGAAAA CATAAAAGTA GGGGGTCAGT AC-AAACACA AGTACTGAGT AGGTATCATC 43519 | | |||| |||||||||| ||||||||| || |||||| |||||||| || ||||||| AGAAGAAAAA CATAAAAGTA -GGGGTCAGT ACAAAACACG GCTACTGAGT AGATATCATC 723 GGCCAA 43513 |||||| GGCCAA 729 hqPGS_C09HBa0278J12.1-_SGN-E351546- (43982 43513) ******************************************************************************** EST sequence 120 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 45552 to 42544): Exon 1 43982 43513 ( 470 n); cDNA 97 580 ( 484 n); score: 0.826 MATCH C09HBa0278J12.1- SGN-E356206- 0.826 470 0.810 C PGS_C09HBa0278J12.1-_SGN-E356206- (43982 43513) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAT-CGGG CCACGACTAG CACCCACACT TACCCTCCTG TGTGAGCGAA 43924 |||||||||| ||||| |||| || | ||| | |||||||||| ||||||||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 156 CCAACCAAAT CTAAATCTTA ACATTTCAAT GTACTATCAA CATAAAGTAA TGCGGAAGAC 43864 |||||| ||| ||||| |||| |||||||||| ||| || ||| || ||||||| |||||||||| CCAACC-AAT CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC 215 TTAAACTCAT TAATAAAA-- ACCAA-TTC- A--A-TAACT AT-TA-T-TT CTCAAAATCT 43814 |||||||||| |||||||| | || | | | | ||| || || | || | ||||| || TTAAACTCAT TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT 275 GGAAGTCATC ATCACAAGAA CATCTAGTCC AAATTACTAA ATCTAAGAGT TTCTAAGAAG 43754 |||||||||| |||||||||| |||||| | ||| |||||| ||||||||| |||||||||| GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 335 C-AAAAAA-T ACATGA-AAG CTAGTCCATG CCAGAACTTC AAGGCATCAA GACATGAAGA 43697 | |||||| | |||| | ||| |||||||||| || ||| ||| |||||||||| ||||||||| CTAAAAAATT ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG 395 GGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTG- ATATCCGGAG TAGTGAAGAC 43638 ||||||||| |||||||||| ||||| |||| ||||||||| | |||||| | | |||||| AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 455 TGGCTAGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 43578 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 515 AAGAAGAAAA CATAAAAGTA GGGGGTCAGT AC-AAACACA AGTACTGAGT AGGTATCATC 43519 | | |||| |||||||||| ||||||||| || |||||| |||||||| || ||||||| AGAAGAAAAA CATAAAAGTA -GGGGTCAGT ACAAAACACG GCTACTGAGT AGATATCATC 574 GGCCAA 43513 |||||| GGCCAA 580 hqPGS_C09HBa0278J12.1-_SGN-E356206- (43982 43513) ******************************************************************************** EST sequence 124 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 46302 to 42544): Exon 1 43982 43513 ( 470 n); cDNA 172 655 ( 484 n); score: 0.823 MATCH C09HBa0278J12.1- SGN-E356696- 0.823 470 0.718 C PGS_C09HBa0278J12.1-_SGN-E356696- (43982 43513) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAT-CGGG CCACGACTAG CACCCACACT TACCCTCCTG TGTGAGCGAA 43924 |||||||||| ||||| |||| || | ||| | |||||||||| ||||||| | |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCNTA TGTGAGCGAA 231 CCAACCAAAT CTAAATCTTA ACATTTCAAT GTACTATCAA CATAAAGTAA TGCGGAAGAC 43864 |||||| ||| ||||| |||| |||||||||| ||| || ||| || ||||||| |||||||||| CCAACC-AAT CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC 290 TTAAACTCAT TAATAAAA-- ACCAA-TTC- A--A-TAACT AT-TA-T-TT CTCAAAATCT 43814 |||||||||| |||||||| | || | | | | ||| || || | || | ||||| || TTAAACTCAT TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT 350 GGAAGTCATC ATCACAAGAA CATCTAGTCC AAATTACTAA ATCTAAGAGT TTCTAAGAAG 43754 |||||||||| |||||||||| |||||| | ||| |||||| ||||||||| |||||||||| GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 410 C-AAAAAA-T ACATGA-AAG CTAGTCCATG CCAGAACTTC AAGGCATCAA GACATGAAGA 43697 | |||||| | |||| | ||| |||||||||| || ||| ||| |||||||||| ||||||||| CTAAAAAATT ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG 470 GGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTG- ATATCCGGAG TAGTGAAGAC 43638 ||||||||| |||||||||| ||||| |||| ||||||||| | |||||| | | |||||| AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 530 TGGCTAGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 43578 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 590 AAGAAGAAAA CATAAAAGTA GGGGGTCAGT AC-AAACACA AGTACTGAGT AGGTATCATC 43519 | | |||| |||||||||| ||||||||| || |||||| |||||||| || ||||||| AGAAGAAAAA CATAAAAGTA -GGGGTCAGT ACAAAACACG GCTACTGAGT AGATATCATC 649 GGCCAA 43513 |||||| GGCCAA 655 hqPGS_C09HBa0278J12.1-_SGN-E356696- (43982 43513) ******************************************************************************** EST sequence 169 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 45999 to 41684): Exon 1 43841 43584 ( 258 n); cDNA 48 305 ( 258 n); score: 0.880 PPA cDNA 19 1 MATCH C09HBa0278J12.1- SGN-E222578+ 0.880 258 0.594 C PGS_C09HBa0278J12.1-_SGN-E222578+ (43841 43584) Alignment (genomic DNA sequence = upper lines): ATTCAATAAC TATTATTTCT CAAAATCTGG AAGTCATCAT CACAAGAACA TCTAGTCCAA 43782 |||||| | | ||||| ||| ||||| |||| |||||||||| |||||||||| |||| | || ATTCAACATC TATTA-TTCC CAAAACCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA 106 ATTACTAAAT CTAAGAGTTT CTAAGAAGCA AAAAATACAT GA-AAGCTAG TCCATGCCAG 43723 | |||||| | |||||||||| |||| |||| |||||||||| | ||||||| |||||||| | ACTACTAATT CTAAGAGTTT CTAA-AAGCT AAAAATACAT AAGAAGCTAG TCCATGCCGG 165 AACTTCAAGG CATCAAGACA TGAAGAGGAA GATCCAGTCC AAGCTAGAAG CATTAGCTCA 43663 | ||||||| |||||||||| ||||| ||| |||||||||| |||||||| | | |||||||| AGGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGACG CGTTAGCTCA 225 CCCTG-ATAT CCGGAGTAGT GAAGACTGGC TAGAGTTACT GTTGAGTCGA AGATGACGGC 43604 ||||| | || |||| || |||||||||| | |||||||| |||||||||| |||||||||| CCCTGAAGAT CCGGTGTGAC GAAGACTGGC TTGAGTTACT GTTGAGTCGA AGATGACGGC 285 ACGTTTGCTG CACTCCACAA 43584 |||||||||| |||||||||| ACGTTTGCTG CACTCCACAA 305 hqPGS_C09HBa0278J12.1-_SGN-E222578+ (43841 43584) ******************************************************************************** EST sequence 421 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 47874 to 42417): Exon 1 43982 43594 ( 389 n); cDNA 305 710 ( 406 n); score: 0.756 MATCH C09HBa0278J12.1- SGN-E392027+ 0.756 389 0.548 C PGS_C09HBa0278J12.1-_SGN-E392027+ (43982 43594) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCGGGC CACGACTAGC ACCCACACTT ACCCTCCTGT GTGAGCGAAC 43923 |||||||||| ||| |||| ||||| || |||||||||| |||||||| | |||||||||| TGTCACGACC AAAACCGGGT TGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 364 CAACCAAATC TAAATCTTAA CATTTCAATG TACTATCAAC ATAAAGTAAT GCGGAAGACT 43863 ||||| |||| | || ||||| ||||||||| || ||||||| | |||||||| | |||||||| CAACC-AATC T-AACCTTAA CATTTCAATA TAATATCAAC AGAAAGTAAT GTGGAAGACT 422 TAAACTCATT -AATA-A-A- -AA--C--CA A-TTC---AA -T-AAC---T ATTATTTCTC 43821 |||||||||| |||| | | || | | | ||| || | ||| | |||||| | | TAAACTCATT AAATACAGAC CAATTCATTA ACTTCTAAAA TTCAACATCT ATTATTCCCC 482 AAAATCTGGA AGTCATCATC ACAAGAACAT CTA-GTCCAA ATTACTAAAT CTAAGAGT-T 43763 |||||||||| |||||||| | |||||||||| ||| | ||| || |||||| |||||||| AAAATCTGGA AGTCATCACC ACAAGAACAT CTACGATCAA ATGACTAAA- CTAAGAGTAG 541 TCTAAGAAGC AAAAAATACA TGA-AAGCTA GTCCATGCCA GAACTTCAAG GCATCAAGAC 43704 ||||| |||| ||||||||| | | |||||| ||||||||| ||| |||||| |||||||||| TCTAA-AAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 600 ATGAAGAGGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTG-ATA TCCGGAGTAG 43645 |||||| || |||||||||| |||||||||| |||||||||| |||||| || |||| |||| TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 660 TGAAGACTGG CTAGAGTTAC TGTTGAGTCG AAGATGACGG CACGTTTGCT G 43594 | |||||||| || || |||| |||||||| | || | || || |||||||||| | T-AAGACTGG CTTGAATTAC TGTTGAGTTG AACACGATGG CACGTTTGCT G 710 hqPGS_C09HBa0278J12.1-_SGN-E392027+ (43982 43594) ******************************************************************************** EST sequence 293 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 44952 to 38845): Exon 1 43982 43595 ( 388 n); cDNA 38 426 ( 389 n); score: 0.930 PPA cDNA 11 1 MATCH C09HBa0278J12.1- SGN-E542084+ 0.930 388 0.462 C PGS_C09HBa0278J12.1-_SGN-E542084+ (43982 43595) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCGGGC CACGACTAGC ACCCACACTT ACCCTCCTGT GTGAGCGAAC 43923 |||||||||| |||||||| | ||||| || |||||||||| ||||| || | |||||||||| TGTCACGACC CAAATCGGAT CGCGACTGGC ACCCACACTT ACCCTGCTAT GTGAGCGAAC 97 CAACCAAATC TAAATCTTAA CATTTCAATG TACTATCAAC ATAAAGTAAT GCGGAAGACT 43863 ||||| |||| ||| ||||| |||||||||| || ||||||| |||||||||| |||||||||| CAACC-AATC CAAACCTTAA CATTTCAATG TAATATCAAC ATAAAGTAAT GCGGAAGACT 156 TAAACTCATT AATAAAAACC AATTCAATAA CTATTATTTC TCAAAATCTG GAAGTCATCA 43803 |||||| ||| ||| |||||| |||||||||| |||||||||| ||||||||| |||||||||| TAAACTTATT AATGAAAACC AATTCAATAA CTATTATTTC CCAAAATCTG GAAGTCATCA 216 TCACAAGAAC ATCTAGTCCA AATTACTAAA TCTAAGAGTT TCTAAGAAGC -AAAAAATAC 43744 ||| |||||| ||||| | || |||||||||| |||||||||| |||||||||| ||||||||| TCATAAGAAC ATCTACTTCA AATTACTAAA TCTAAGAGTT TCTAAGAAGC TAAAAAATAC 276 ATGAAAGCTA GTCCATGCCA GAACTTCAAG GCATCAAGAC ATGAAGAGGA AGATCCAGTC 43684 || ||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATAAAAGCTA GTCCATGCCG GAACTTCAAG ACATCAAGAC ATGAAGAGGA AGATCCAGTC 336 CAAGCTAG-A AGCATTAGCT CACCCTGATA TCCGGAGTAG TGAAGACTGG CTAGAGTTAC 43625 ||| |||| | |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| CAATCTAGAA AGCATTAGCT CACCCTGATA TCCGAAGTAA TGAAGACTGG CTAGAGTTAC 396 TGTTGAGTCG AAGATGACGG CACGTTTGCT 43595 |||||||||| |||||||||| |||||||||| TGTTGAGTCG AAGATGACGG CACGTTTGCT 426 hqPGS_C09HBa0278J12.1-_SGN-E542084+ (43982 43595) ******************************************************************************** EST sequence 70 -strand 405 n (File: SGN-E336814-) 1 TTTTTTTTTT TAATAAAATC AATAACTATT ATTATCCCCA AAATCTGGAA GTCATCACCA 61 CAAGAACATC TATGATCAAA GTACTAAACT AAGAGTGTTC TAAAAAGCTA AAATACAAGA 121 AAGCTAGTCC ATGCCGGAAC TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAG 181 CTAGAAACAT TAGCTCACCT TAATATCCGG AATAATGAAG ACTGGCTAGA GTTACTGTTG 241 AGTCGAAGAT GACGGCACGT TTGCTCTCTT GTGTGATTTG CAAGCTATTG CAAAGGAGTA 301 GTTGCGGGTT TCCTTGTCAT AAAAAATAAT GCAAGGGAAA GCAGAAGATA ATGAAAATTA 361 GCAATATGTC AATCCATGAT CATGAAGTGC TTTGTTTGCT TTGGG Predicted gene structure (within gDNA segment 45531 to 41595): Exon 1 43854 43595 ( 260 n); cDNA 4 265 ( 262 n); score: 0.865 MATCH C09HBa0278J12.1- SGN-E336814- 0.865 260 0.642 C PGS_C09HBa0278J12.1-_SGN-E336814- (43854 43595) Alignment (genomic DNA sequence = upper lines): TTAATAAAAA CCAATTCAAT AACTATTATT -T-CTCAAAA TCTGGAAGTC ATCATCACAA 43797 || | || || ||||| |||||||||| | | ||||| |||||||||| |||| ||||| TTTTTTTTAA TAAAATCAAT AACTATTATT ATCCCCAAAA TCTGGAAGTC ATCACCACAA 63 GAACATCTA- GTCCAAATTA CTAAATCTAA GAGT-TTCTA AGAAGCAAAA AATACATGAA 43739 ||||||||| | |||| || ||||| |||| |||| ||||| | |||| || |||||| ||| GAACATCTAT GATCAAAGTA CTAAA-CTAA GAGTGTTCTA AAAAGC-TAA AATACAAGAA 121 AGCTAGTCCA TGCCAGAACT TCAAGGCATC AAGACATGAA GAGGAAGATC CAGTCCAAGC 43679 |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| AGCTAGTCCA TGCCGGAACT TCAAGACATC AAGACATGAA GAGGAAGATC CAGTCCAAGC 181 TAGAAGCATT AGCTCACCCT GATATCCGGA GTAGTGAAGA CTGGCTAGAG TTACTGTTGA 43619 ||||| |||| |||||||| | ||||||||| || |||||| |||||||||| |||||||||| TAGAAACATT AGCTCACCTT AATATCCGGA ATAATGAAGA CTGGCTAGAG TTACTGTTGA 241 GTCGAAGATG ACGGCACGTT TGCT 43595 |||||||||| |||||||||| |||| GTCGAAGATG ACGGCACGTT TGCT 265 hqPGS_C09HBa0278J12.1-_SGN-E336814- (43854 43595) ******************************************************************************** EST sequence 55 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 44821 to 41972): Exon 1 43854 43606 ( 249 n); cDNA 9 255 ( 247 n); score: 0.873 MATCH C09HBa0278J12.1- SGN-E373117- 0.873 249 0.833 C PGS_C09HBa0278J12.1-_SGN-E373117- (43854 43606) Alignment (genomic DNA sequence = upper lines): TTAATAAAAA CCAATTCAAT AACTATTATT TCTCAAAATC TGGAAGTCAT CATCACAAGA 43795 || |||||| | | ||| | ||||| | | ||||||| |||||||||| |||||||||| TTTCTAAAAA CTCA-ACAAC TATTATTA-T CCCCAAAATC TGGAAGTCAT CATCACAAGA 66 ACATCTAGTC CAAATTACTA AATCTAAGAG TTTCTAAGAA GCAAAAAATA CATGAA-AGC 43736 ||||||| | |||||||||| |||||||||| | |||||||| || ||| ||| ||| || ||| ACATCTACTT CAAATTACTA AATCTAAGAG TATCTAAGAA GCTAAA-ATA CATAAACAGC 125 TAGTCCATGC CAGAACTTCA AGGCATCAAG ACATGAAGAG GAAGATCCAG TCCAAGCTAG 43676 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAAGAA GAAGATCCAG TCCAAGCTAG 185 AAGCATTAGC TCACCCTGAT ATCCGGAGTA GTGAAGACTG GCTAGAGTTA CTGTTGAGTC 43616 |||| ||||| ||||||||| ||||| ||| ||||||||| ||||||||| | ||||||| AAGCGTTAGC TCACCCTGAA ATCCGATGTA ATGAAGACTG GCTAGAGTTG CGGTTGAGTT 245 GAAGATGACG 43606 ||||| |||| GAAGACGACG 255 hqPGS_C09HBa0278J12.1-_SGN-E373117- (43854 43606) ******************************************************************************** EST sequence 256 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 44801 to 41952): Exon 1 43831 43606 ( 226 n); cDNA 30 254 ( 225 n); score: 0.900 PPA cDNA 12 1 MATCH C09HBa0278J12.1- SGN-E373116+ 0.900 226 0.756 C PGS_C09HBa0278J12.1-_SGN-E373116+ (43831 43606) Alignment (genomic DNA sequence = upper lines): TATTATTTCT CAAAATCTGG AAGTCATCAT CACAAGAACA TCTAGTCCAA ATTACTAAAT 43772 ||||| | | |||||||||| |||||||||| |||||||||| |||| | ||| |||||||||| TATTA-TCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTCAA ATTACTAAAT 88 CTAAGAGTTT CTAAGAAGCA AAAAATACAT GAA-AGCTAG TCCATGCCAG AACTTCAAGG 43713 |||||||| | ||||||||| ||| |||||| || |||||| |||||||| | |||||||||| CTAAGAGTAT CTAAGAAGCT AAA-ATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 147 CATCAAGACA TGAAGAGGAA GATCCAGTCC AAGCTAGAAG CATTAGCTCA CCCTGATATC 43653 |||||||||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||| ||| CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 207 CGGAGTAGTG AAGACTGGCT AGAGTTACTG TTGAGTCGAA GATGACG 43606 || ||| || |||||||||| |||||| | | |||||| ||| || |||| CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGACG 254 hqPGS_C09HBa0278J12.1-_SGN-E373116+ (43831 43606) ******************************************************************************** EST sequence 87 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 44920 to 42772): Exon 1 43854 43642 ( 213 n); cDNA 9 219 ( 211 n); score: 0.862 MATCH C09HBa0278J12.1- SGN-E298638- 0.862 213 0.973 C PGS_C09HBa0278J12.1-_SGN-E298638- (43854 43642) Alignment (genomic DNA sequence = upper lines): TTAATAAAAA CCAATTCAAT AACTATTATT TCTCAAAATC TGGAAGTCAT CATCACAAGA 43795 || |||||| | | ||| | ||||| | | ||||||| ||| |||||| |||||||||| TTTCTAAAAA CTCA-ACAAC TATTATTA-T CCCCAAAATC TGGCAGTCAT CATCACAAGA 66 ACATCTAGTC CAAATTACTA AATCTAAGAG TTTCTAAGAA GCAAAAAATA CATGAA-AGC 43736 |||| || | |||||||||| |||||||||| | |||||||| || |||| || ||| || ||| ACATGTACTT CAAATTACTA AATCTAAGAG TATCTAAGAA GCTAAAA-TA CATAAACAGC 125 TAGTCCATGC CAGAACTTCA AGGCATCAAG ACATGAAGAG GAAGATCCAG TCCAAGCTAG 43676 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAAGAA GAAGATCCAG TCCAAGCTAG 185 AAGCATTAGC TCACCCTGAT ATCCGGAGTA GTGA 43642 |||| ||||| ||||||||| ||||| ||| ||| AAGCGTTAGC TCACCCTGAA ATCCGATGTA ATGA 219 hqPGS_C09HBa0278J12.1-_SGN-E298638- (43854 43642) ******************************************************************************** EST sequence 112 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 44721 to 38482): Exon 1 43851 43668 ( 184 n); cDNA 27 211 ( 185 n); score: 0.870 Intron 1 43667 39963 (3705 n); Pd: 0.000 (s: 0.92), Pa: 0.321 (s: 0.63) Exon 2 39962 39922 ( 41 n); cDNA 212 250 ( 39 n); score: 0.634 PPA cDNA 26 1 MATCH C09HBa0278J12.1- SGN-E368629- 0.870 225 0.338 C PGS_C09HBa0278J12.1-_SGN-E368629- (43851 43668,39962 39922) Alignment (genomic DNA sequence = upper lines): ATAAAAACCA ATTCAATAAC TATTATTTCT CAAAATCTGG AAGTCATCAT CACAAGAACA 43792 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| ATAAAAACCA ATTCAATAAC TATTATTTCC CAAAATCTGG AAGTTATCAT CACAAGAACA 86 TCTAGTCCAA ATTACTAAAT CTAAGAGTTT CTAAGAAGCA AAAAATACAT GA-A-AGCTA 43734 |||| | | | |||||||||| ||| ||| | ||||| ||| ||||||||| | | || || TCTACTTCGA ATTACTAAAT CTAGAAGTAT CTAAG-AGCC TAAAATACAT AACACAGTTA 145 GTCCATGCCA GAACTTCAAG GCATCAAGAC ATGAAGAGGA AGATCCAGTC CAAGCTAGAA 43674 ||||||||| ||||||||| |||||||||| || |||| || |||||||||| |||||||||| GTCCATGCCG AAACTTCAAG GCATCAAGAC ATAAAGAAGA AGATCCAGTC CAAGCTAGAA 205 GCATTAGCTC ACCCTGATAT CCGGAGTAGT GAAGACTGGC TAGAGTTACT GTTGAGTCGA 43614 || || GCTTTG.... .......... .......... .......... .......... .......... 211 AGATGACGGC ACGTTTGCTG CACTCCACAA ATAACAAAGA AGAAAACATA AAAGTAGGGG 43554 .......... .......... .......... .......... .......... .......... 211 GTCAGTACAA ACACAAGTAC TGAGTAGGTA TCATCGGCCA ACTCAAAATA GAAAACAGTA 43494 .......... .......... .......... .......... .......... .......... 211 TATACCAAGT AATATCATAA AATCAACTAT GATACTCAAC ATGTAGCATT TACAATTACC 43434 .......... .......... .......... .......... .......... .......... 211 ATAACCCTTG GTTACAACAC CAAGCTCGTC AATGAGGACT CACGCCTCCT CATCATACTC 43374 .......... .......... .......... .......... .......... .......... 211 ATTTGGGATT TAGGTTCATT AGATTGAGTA TATTAACATC TTTCAGGATT CATTATCTTT 43314 .......... .......... .......... .......... .......... .......... 211 ATTTCTCTCG TGTCGGTACG TGACACTCCG CTCCTCATAT ACTATCCTGG TGTCGGAACG 43254 .......... .......... .......... .......... .......... .......... 211 TGACACTCCG ATCCTCATAT ACTATCCTGG TACCGGAACG TGGCACGCAA TCCATATTCT 43194 .......... .......... .......... .......... .......... .......... 211 ATCCTGGTGT CGGAACGTGA CACTCCGATC CTCATATACT ATCCTGGTAC CGGAACGTGG 43134 .......... .......... .......... .......... .......... .......... 211 CACCCGATCC ATATTCTATT CTGGTGTCGG AACGTGACAC TCCGATCCTC ATATACTATC 43074 .......... .......... .......... .......... .......... .......... 211 ATGGTACCGG AACGTGGCAC CCGATCCATA TTCTATCCTG GTGTCGGAAC GTGACACTCC 43014 .......... .......... .......... .......... .......... .......... 211 GATCCTCATA TACTATCCTG GTACCGGAAC GTGGTACCCG ATCCCCTAAT CTCCTTCTAT 42954 .......... .......... .......... .......... .......... .......... 211 CAATTCATCA AGCCTTCTTT CTTACCAAAG ACATCATCAA TCTCATTATT TTAGTTCATT 42894 .......... .......... .......... .......... .......... .......... 211 ACGCCTTCTT TTATACCAAG GCCTCATCAT TAACAAAGAG ATTAGGGTTT TTCAAGATTT 42834 .......... .......... .......... .......... .......... .......... 211 GGGATTCAAT AACTTCATCA TGCTTATATA ATCACAATTA TATAATTACA TTCATGCAAG 42774 .......... .......... .......... .......... .......... .......... 211 CATACAATTA AGCACATAGC AGGGTTTACA ACATTATCAA TACATATCAT TCGCTATTAA 42714 .......... .......... .......... .......... .......... .......... 211 GAGTTTACTA CGAATATCGT AAGAGAAACC ATAACCTACC TCCACCGAAG ACTAATGATC 42654 .......... .......... .......... .......... .......... .......... 211 AAGCAAGAAT TTTCCAAAGC CTTGTGTTTT TCCTCTTCGT TCGTCTCTCT CTATCGATTC 42594 .......... .......... .......... .......... .......... .......... 211 TCCTTCTCTC TCTTTCTGTT CTTTTCTTTT TCTTATTCAA ACCCTCTTTC TTTTACCCTA 42534 .......... .......... .......... .......... .......... .......... 211 ATTAGCATAT AATTAAGAAT AAAATGTGGC AATAATAACC CATTAATTAA CTTAAGGTTA 42474 .......... .......... .......... .......... .......... .......... 211 CCTCTTTTAA CCCCCAAGAA ATTTAGTCAT TAATATAAAC CCACGAAATA TATAATTATA 42414 .......... .......... .......... .......... .......... .......... 211 GCAGGAATAG TCCAAAACGC CCCTTTAAAA CTTAACCAGA AATCTGACTC CGACTGGGAT 42354 .......... .......... .......... .......... .......... .......... 211 TACGCAACCT GTGACGGCCC GTCGCGCCTG CGACGGTTCG TCATGCAGGT TCGTCAGAGA 42294 .......... .......... .......... .......... .......... .......... 211 CTCGATTTCC TTAAGGAGTC TGTGACGGCC CGTCGTACCT ACGACGGTCC GTCCTGCACT 42234 .......... .......... .......... .......... .......... .......... 211 TCCGTCACGA CGTTCAGAGA ATCGTTCCCT GTACCAAATT CTCAAGAGTT GAAGTGTTTT 42174 .......... .......... .......... .......... .......... .......... 211 GAAACGGTGG ATCACGACGG TTCGTCGTGC CTGTGACGGT CCGTCCTGCA GGTCCGTCAC 42114 .......... .......... .......... .......... .......... .......... 211 AGAGTTCAGA GAGTCGATTT TAGCACCCAA ATTTCAGAAT TTCTAAGTGT TTTGGGACGA 42054 .......... .......... .......... .......... .......... .......... 211 GACACCCTCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG TGGGTTCCGT CGTCTCAGCC 41994 .......... .......... .......... .......... .......... .......... 211 TATTTTTCCA GAAATAAAAT CTGCTGCTCA AAATGACTAA ACAGGTCGTT ACACAAGCTC 41934 .......... .......... .......... .......... .......... .......... 211 CAAAAATCTT TAGGGTTATT TTAATAATAG ATAAACATGT GCATCAATTG TGTATTTAAA 41874 .......... .......... .......... .......... .......... .......... 211 AAATCTCAGA TGATGATATG GAACTTTCAT ACCATAATTT TTGGAGAATA CCAAATTTCA 41814 .......... .......... .......... .......... .......... .......... 211 TCTCATGACA TGAGATCAAC ATGAAATCGC ATGTTCAAAC GCTGATTACA TCTCACAATT 41754 .......... .......... .......... .......... .......... .......... 211 CTATATCGTG ATATGATATG ACCAAACGCC TACTAAGTCA AGATTTTTTT TTATATAAAT 41694 .......... .......... .......... .......... .......... .......... 211 ATAATTTCTT TGCTATTGAT TATTGATTAA TCCATTAAAA ATGAATTATC CAATAAAAAA 41634 .......... .......... .......... .......... .......... .......... 211 TCGAAGACTC TTATCAAGAT TTTGAACTAA TAATCCATTA GCAACAAATT AACAACTTTA 41574 .......... .......... .......... .......... .......... .......... 211 TTTAAATAAT CAACTTTGCG TCAATTATAA ATAATCCTAA GATAAATACA TATTTTAAAC 41514 .......... .......... .......... .......... .......... .......... 211 TCACTCACAA AAAGTAAATC ACGTTAAGAT ACAATAGTTC GCAACAAATA GAAGAATACC 41454 .......... .......... .......... .......... .......... .......... 211 GTGTAAACCC CTACTAATAG AAAATGGACA AGAATATCAA AAAATTGAAG TGATTTTAAT 41394 .......... .......... .......... .......... .......... .......... 211 TTTCTCGTTT GATGTTAGTT TTTTCCTTCA AAAGTTTGGA ATTGTCAATA GTACCTTTAC 41334 .......... .......... .......... .......... .......... .......... 211 TATTTTTTTA CTTATCTACT ATACTATTAT ATAAATGTAA ATAAGTATAA AACTAGGCGT 41274 .......... .......... .......... .......... .......... .......... 211 CAACATGTCT GCTTCAATTT TATTATAATT ACTATTTGAC TTACTGGCCA AAGTTAGATA 41214 .......... .......... .......... .......... .......... .......... 211 TTCCATGTAC AATGTCCCAG TTTCAAACCT GGCCAACATT TTTTTTCATC TCATTTTTAA 41154 .......... .......... .......... .......... .......... .......... 211 TGCCTTTAGT AGTTTTTTTA AATAATTTAT TTCATTAATT AAATACTAAT AATCTATATT 41094 .......... .......... .......... .......... .......... .......... 211 ATTACTTATT TATGTTTTAG TTATTTCAAT TTATTTCTTT TAGACTCAAA TTATAGACAA 41034 .......... .......... .......... .......... .......... .......... 211 TATAATTATT TTATTATATT AATATGCAAA AAGCTACAAT TTATAGTTAT TTTTTGTATA 40974 .......... .......... .......... .......... .......... .......... 211 ATTTTTGAGT ATCTAATTTT TTTGTTAAAA ATGTATAACT ATATTTAATT TAATTTAACT 40914 .......... .......... .......... .......... .......... .......... 211 TATAAAATTA ATTAAACTGA CTTTTTTAAA AAGCGTAACA TGACAATTAA AAGTGAATGA 40854 .......... .......... .......... .......... .......... .......... 211 AAGAAGTAGT AAATAGTACA ATTATTTGGG GGCCACTTCA ATTAGTATTT CCGATCATAA 40794 .......... .......... .......... .......... .......... .......... 211 ATTTTTTTAA ATTACATTCT TATGAATGTC AATCTTTATT TGCTAATAAA AATTTAGTCA 40734 .......... .......... .......... .......... .......... .......... 211 ACTTTCAAAA TTCTATTGTG CCTCATAAAA TGGAATTTAA AATATATTAT TTGAAGATGA 40674 .......... .......... .......... .......... .......... .......... 211 CCTTAAAATT ACTAAGAATC ACAGTAATTA TCAACATGAA ATATTTAAAA GGCTTTAAAA 40614 .......... .......... .......... .......... .......... .......... 211 AATTATTTGA TTCAAACACA GAAGGTGACA TATGTTATTC AAAAAAATAT TATAAATTAC 40554 .......... .......... .......... .......... .......... .......... 211 AAAATTTAAT ACTTTAGCAT ATCTCATAAA ATATCTTGTA TCTCACTTTG TAAAGAGACA 40494 .......... .......... .......... .......... .......... .......... 211 AGGAAAAAAT ATTGAAAAAT TGGCTCTTGC CTCCCCAAGA ACTTGTCTTC CTTACTTGCT 40434 .......... .......... .......... .......... .......... .......... 211 TTCTTTACTG TTTTGTGGCC TGTTTGTTTG ACTGTCTTGC TTATTGTTCC TTGTGTGTTT 40374 .......... .......... .......... .......... .......... .......... 211 GGTTGGCTGT TGGACTGAGT TTTGAAGAGT TGTGCAAGCC TTCATATACT GTCCCACGAG 40314 .......... .......... .......... .......... .......... .......... 211 GTGAAAATTT GACCCTGTGA CAAGAATATC TCAAGACAAC TAACAAAAGG CTAATTTTTG 40254 .......... .......... .......... .......... .......... .......... 211 CACTGCTGGG ATGATTTTAA AATATTTAAT TTTAATTCTA TATTATAATT TGATCAAAAA 40194 .......... .......... .......... .......... .......... .......... 211 ATTAAAATGA TATAATTTTT TAAAAATACT TTCTTTTTTT CAAAAAGATT AGCCTAGTTT 40134 .......... .......... .......... .......... .......... .......... 211 GACTTAGAAT GAAGTTTTAG AAAATAAAGA AGATTTTTTA ATTTTGTGAT TCTAATTTAA 40074 .......... .......... .......... .......... .......... .......... 211 AGTTATATCA AACATACCAA AATACCCTTT AATCTTGTAA TCTTAAATAT GTTACGTAAA 40014 .......... .......... .......... .......... .......... .......... 211 AATTAAAATA AAAGTGTTGT AAAAAAAAAT GAATCATTCT TTTTAAAATA GATTAAAAAA 39954 || | | .......... .......... .......... .......... .......... .TTTTATCGA 220 AATAAGATCA TTCTTTTGAA ACGGAGAGAG TT 39922 || ||| | | || ||| ||| | ||| | || AAAAAGGTGA TT-TTTCGAA A-AGAGTTTG TT 250 hqPGS_C09HBa0278J12.1-_SGN-E368629- (43851 43668) ******************************************************************************** EST sequence 105 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 44676 to 38482): Exon 1 43832 43668 ( 165 n); cDNA 1 165 ( 165 n); score: 0.906 Intron 1 43667 39963 (3705 n); Pd: 0.000 (s: 0.94), Pa: 0.321 (s: 0.63) Exon 2 39962 39922 ( 41 n); cDNA 166 204 ( 39 n); score: 0.634 MATCH C09HBa0278J12.1- SGN-E238551- 0.906 206 0.332 C PGS_C09HBa0278J12.1-_SGN-E238551- (43832 43668,39962 39922) Alignment (genomic DNA sequence = upper lines): CTATTATTTC TCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTAGTCCA AATTACTAAA 43773 |||||||||| ||||||||| ||||| |||| |||||||||| ||||| | | |||||||||| CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 60 TCTAAGAGTT TCTAAGAAGC AAAAAATACA TGAA-AGCTA GTCCATGCCA GAACTTCAAG 43714 ||||||||| |||||||||| |||| |||| | || ||||| ||||||||| |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAA-TACA TAAACAGCTA GTCCATGCCG GAACTTCAAG 119 GCATCAAGAC ATGAAGAGGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGATAT 43654 |||||||||| ||||||| || |||||||||| |||||||||| || || GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GCTTTG.... .......... 165 CCGGAGTAGT GAAGACTGGC TAGAGTTACT GTTGAGTCGA AGATGACGGC ACGTTTGCTG 43594 .......... .......... .......... .......... .......... .......... 165 CACTCCACAA ATAACAAAGA AGAAAACATA AAAGTAGGGG GTCAGTACAA ACACAAGTAC 43534 .......... .......... .......... .......... .......... .......... 165 TGAGTAGGTA TCATCGGCCA ACTCAAAATA GAAAACAGTA TATACCAAGT AATATCATAA 43474 .......... .......... .......... .......... .......... .......... 165 AATCAACTAT GATACTCAAC ATGTAGCATT TACAATTACC ATAACCCTTG GTTACAACAC 43414 .......... .......... .......... .......... .......... .......... 165 CAAGCTCGTC AATGAGGACT CACGCCTCCT CATCATACTC ATTTGGGATT TAGGTTCATT 43354 .......... .......... .......... .......... .......... .......... 165 AGATTGAGTA TATTAACATC TTTCAGGATT CATTATCTTT ATTTCTCTCG TGTCGGTACG 43294 .......... .......... .......... .......... .......... .......... 165 TGACACTCCG CTCCTCATAT ACTATCCTGG TGTCGGAACG TGACACTCCG ATCCTCATAT 43234 .......... .......... .......... .......... .......... .......... 165 ACTATCCTGG TACCGGAACG TGGCACGCAA TCCATATTCT ATCCTGGTGT CGGAACGTGA 43174 .......... .......... .......... .......... .......... .......... 165 CACTCCGATC CTCATATACT ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATTCTATT 43114 .......... .......... .......... .......... .......... .......... 165 CTGGTGTCGG AACGTGACAC TCCGATCCTC ATATACTATC ATGGTACCGG AACGTGGCAC 43054 .......... .......... .......... .......... .......... .......... 165 CCGATCCATA TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TACTATCCTG 42994 .......... .......... .......... .......... .......... .......... 165 GTACCGGAAC GTGGTACCCG ATCCCCTAAT CTCCTTCTAT CAATTCATCA AGCCTTCTTT 42934 .......... .......... .......... .......... .......... .......... 165 CTTACCAAAG ACATCATCAA TCTCATTATT TTAGTTCATT ACGCCTTCTT TTATACCAAG 42874 .......... .......... .......... .......... .......... .......... 165 GCCTCATCAT TAACAAAGAG ATTAGGGTTT TTCAAGATTT GGGATTCAAT AACTTCATCA 42814 .......... .......... .......... .......... .......... .......... 165 TGCTTATATA ATCACAATTA TATAATTACA TTCATGCAAG CATACAATTA AGCACATAGC 42754 .......... .......... .......... .......... .......... .......... 165 AGGGTTTACA ACATTATCAA TACATATCAT TCGCTATTAA GAGTTTACTA CGAATATCGT 42694 .......... .......... .......... .......... .......... .......... 165 AAGAGAAACC ATAACCTACC TCCACCGAAG ACTAATGATC AAGCAAGAAT TTTCCAAAGC 42634 .......... .......... .......... .......... .......... .......... 165 CTTGTGTTTT TCCTCTTCGT TCGTCTCTCT CTATCGATTC TCCTTCTCTC TCTTTCTGTT 42574 .......... .......... .......... .......... .......... .......... 165 CTTTTCTTTT TCTTATTCAA ACCCTCTTTC TTTTACCCTA ATTAGCATAT AATTAAGAAT 42514 .......... .......... .......... .......... .......... .......... 165 AAAATGTGGC AATAATAACC CATTAATTAA CTTAAGGTTA CCTCTTTTAA CCCCCAAGAA 42454 .......... .......... .......... .......... .......... .......... 165 ATTTAGTCAT TAATATAAAC CCACGAAATA TATAATTATA GCAGGAATAG TCCAAAACGC 42394 .......... .......... .......... .......... .......... .......... 165 CCCTTTAAAA CTTAACCAGA AATCTGACTC CGACTGGGAT TACGCAACCT GTGACGGCCC 42334 .......... .......... .......... .......... .......... .......... 165 GTCGCGCCTG CGACGGTTCG TCATGCAGGT TCGTCAGAGA CTCGATTTCC TTAAGGAGTC 42274 .......... .......... .......... .......... .......... .......... 165 TGTGACGGCC CGTCGTACCT ACGACGGTCC GTCCTGCACT TCCGTCACGA CGTTCAGAGA 42214 .......... .......... .......... .......... .......... .......... 165 ATCGTTCCCT GTACCAAATT CTCAAGAGTT GAAGTGTTTT GAAACGGTGG ATCACGACGG 42154 .......... .......... .......... .......... .......... .......... 165 TTCGTCGTGC CTGTGACGGT CCGTCCTGCA GGTCCGTCAC AGAGTTCAGA GAGTCGATTT 42094 .......... .......... .......... .......... .......... .......... 165 TAGCACCCAA ATTTCAGAAT TTCTAAGTGT TTTGGGACGA GACACCCTCG ACGGTCCGTC 42034 .......... .......... .......... .......... .......... .......... 165 GTGCCCATGA CGTTCCGTCG TGGGTTCCGT CGTCTCAGCC TATTTTTCCA GAAATAAAAT 41974 .......... .......... .......... .......... .......... .......... 165 CTGCTGCTCA AAATGACTAA ACAGGTCGTT ACACAAGCTC CAAAAATCTT TAGGGTTATT 41914 .......... .......... .......... .......... .......... .......... 165 TTAATAATAG ATAAACATGT GCATCAATTG TGTATTTAAA AAATCTCAGA TGATGATATG 41854 .......... .......... .......... .......... .......... .......... 165 GAACTTTCAT ACCATAATTT TTGGAGAATA CCAAATTTCA TCTCATGACA TGAGATCAAC 41794 .......... .......... .......... .......... .......... .......... 165 ATGAAATCGC ATGTTCAAAC GCTGATTACA TCTCACAATT CTATATCGTG ATATGATATG 41734 .......... .......... .......... .......... .......... .......... 165 ACCAAACGCC TACTAAGTCA AGATTTTTTT TTATATAAAT ATAATTTCTT TGCTATTGAT 41674 .......... .......... .......... .......... .......... .......... 165 TATTGATTAA TCCATTAAAA ATGAATTATC CAATAAAAAA TCGAAGACTC TTATCAAGAT 41614 .......... .......... .......... .......... .......... .......... 165 TTTGAACTAA TAATCCATTA GCAACAAATT AACAACTTTA TTTAAATAAT CAACTTTGCG 41554 .......... .......... .......... .......... .......... .......... 165 TCAATTATAA ATAATCCTAA GATAAATACA TATTTTAAAC TCACTCACAA AAAGTAAATC 41494 .......... .......... .......... .......... .......... .......... 165 ACGTTAAGAT ACAATAGTTC GCAACAAATA GAAGAATACC GTGTAAACCC CTACTAATAG 41434 .......... .......... .......... .......... .......... .......... 165 AAAATGGACA AGAATATCAA AAAATTGAAG TGATTTTAAT TTTCTCGTTT GATGTTAGTT 41374 .......... .......... .......... .......... .......... .......... 165 TTTTCCTTCA AAAGTTTGGA ATTGTCAATA GTACCTTTAC TATTTTTTTA CTTATCTACT 41314 .......... .......... .......... .......... .......... .......... 165 ATACTATTAT ATAAATGTAA ATAAGTATAA AACTAGGCGT CAACATGTCT GCTTCAATTT 41254 .......... .......... .......... .......... .......... .......... 165 TATTATAATT ACTATTTGAC TTACTGGCCA AAGTTAGATA TTCCATGTAC AATGTCCCAG 41194 .......... .......... .......... .......... .......... .......... 165 TTTCAAACCT GGCCAACATT TTTTTTCATC TCATTTTTAA TGCCTTTAGT AGTTTTTTTA 41134 .......... .......... .......... .......... .......... .......... 165 AATAATTTAT TTCATTAATT AAATACTAAT AATCTATATT ATTACTTATT TATGTTTTAG 41074 .......... .......... .......... .......... .......... .......... 165 TTATTTCAAT TTATTTCTTT TAGACTCAAA TTATAGACAA TATAATTATT TTATTATATT 41014 .......... .......... .......... .......... .......... .......... 165 AATATGCAAA AAGCTACAAT TTATAGTTAT TTTTTGTATA ATTTTTGAGT ATCTAATTTT 40954 .......... .......... .......... .......... .......... .......... 165 TTTGTTAAAA ATGTATAACT ATATTTAATT TAATTTAACT TATAAAATTA ATTAAACTGA 40894 .......... .......... .......... .......... .......... .......... 165 CTTTTTTAAA AAGCGTAACA TGACAATTAA AAGTGAATGA AAGAAGTAGT AAATAGTACA 40834 .......... .......... .......... .......... .......... .......... 165 ATTATTTGGG GGCCACTTCA ATTAGTATTT CCGATCATAA ATTTTTTTAA ATTACATTCT 40774 .......... .......... .......... .......... .......... .......... 165 TATGAATGTC AATCTTTATT TGCTAATAAA AATTTAGTCA ACTTTCAAAA TTCTATTGTG 40714 .......... .......... .......... .......... .......... .......... 165 CCTCATAAAA TGGAATTTAA AATATATTAT TTGAAGATGA CCTTAAAATT ACTAAGAATC 40654 .......... .......... .......... .......... .......... .......... 165 ACAGTAATTA TCAACATGAA ATATTTAAAA GGCTTTAAAA AATTATTTGA TTCAAACACA 40594 .......... .......... .......... .......... .......... .......... 165 GAAGGTGACA TATGTTATTC AAAAAAATAT TATAAATTAC AAAATTTAAT ACTTTAGCAT 40534 .......... .......... .......... .......... .......... .......... 165 ATCTCATAAA ATATCTTGTA TCTCACTTTG TAAAGAGACA AGGAAAAAAT ATTGAAAAAT 40474 .......... .......... .......... .......... .......... .......... 165 TGGCTCTTGC CTCCCCAAGA ACTTGTCTTC CTTACTTGCT TTCTTTACTG TTTTGTGGCC 40414 .......... .......... .......... .......... .......... .......... 165 TGTTTGTTTG ACTGTCTTGC TTATTGTTCC TTGTGTGTTT GGTTGGCTGT TGGACTGAGT 40354 .......... .......... .......... .......... .......... .......... 165 TTTGAAGAGT TGTGCAAGCC TTCATATACT GTCCCACGAG GTGAAAATTT GACCCTGTGA 40294 .......... .......... .......... .......... .......... .......... 165 CAAGAATATC TCAAGACAAC TAACAAAAGG CTAATTTTTG CACTGCTGGG ATGATTTTAA 40234 .......... .......... .......... .......... .......... .......... 165 AATATTTAAT TTTAATTCTA TATTATAATT TGATCAAAAA ATTAAAATGA TATAATTTTT 40174 .......... .......... .......... .......... .......... .......... 165 TAAAAATACT TTCTTTTTTT CAAAAAGATT AGCCTAGTTT GACTTAGAAT GAAGTTTTAG 40114 .......... .......... .......... .......... .......... .......... 165 AAAATAAAGA AGATTTTTTA ATTTTGTGAT TCTAATTTAA AGTTATATCA AACATACCAA 40054 .......... .......... .......... .......... .......... .......... 165 AATACCCTTT AATCTTGTAA TCTTAAATAT GTTACGTAAA AATTAAAATA AAAGTGTTGT 39994 .......... .......... .......... .......... .......... .......... 165 AAAAAAAAAT GAATCATTCT TTTTAAAATA GATTAAAAAA AATAAGATCA TTCTTTTGAA 39934 || | | || ||| | | || ||| ||| .......... .......... .......... .TTTTATCGA AAAAAGGTGA TT-TTTCGAA 193 ACGGAGAGAG TT 39922 | ||| | || A-AGAGTTTG TT 204 hqPGS_C09HBa0278J12.1-_SGN-E238551- (43832 43668) ******************************************************************************** EST sequence 74 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 44541 to 40932): Exon 1 43854 43672 ( 183 n); cDNA 6 188 ( 183 n); score: 0.921 MATCH C09HBa0278J12.1- SGN-E352844- 0.921 183 0.455 C PGS_C09HBa0278J12.1-_SGN-E352844- (43854 43672) Alignment (genomic DNA sequence = upper lines): TTAATAAAAA CCAATTCAAT AACTATTATT TCTCAAAATC TGGAAGTCAT CATCACAAGA 43795 || ||||||| |||||||||| |||||||||| || ||||||| ||||||| || |||||||||| TTTATAAAAA CCAATTCAAT AACTATTATT TCCCAAAATC TGGAAGTTAT CATCACAAGA 65 ACATCTAGTC CAAATTACTA AATCTAAGAG TTTCTAAGAA GCAAAAAATA CATGAA-AGC 43736 ||||||| | | |||||||| |||||||||| | |||||||| || |||||| ||| || ||| ACATCTACTT CGAATTACTA AATCTAAGAG TATCTAAGAA GC-TAAAATA CATAAACAGC 124 TAGTCCATGC CAGAACTTCA AGGCATCAAG ACATGAAGAG GAAGATCCAG TCCAAGCTAG 43676 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAAGAA GAAGATCCAG TCCAAGCTAG 184 AAGC 43672 |||| AAGC 188 hqPGS_C09HBa0278J12.1-_SGN-E352844- (43854 43672) ******************************************************************************** EST sequence 150 +strand 580 n (File: SGN-E347597+) 1 GGTAACTACG AACAAGATAT GCCTTCTGTA GCCCTTCCCT TATGCATCCT CCTACTCCTA 61 CTCCAACTCT CTGCAGCTTC ACCGGTCGTC GGCGATGAGG ATTCTCAGTC CCCGACGGCG 121 TATGAGATTC TTCAGGAATA CGACTTTCCG GTAGGGATAC TTCCGAAGGG CGTAACAAGG 181 TACGAACTCG ACAAAACAAC GGGCAATTTC GCCGTTTACT TTAACAAATC GTGCAGTTTC 241 AGCATAAGCG GCTATAATCT CAAGTATATG AGTAAAATTA CTGGTAAAAT CTCTAAGGAT 301 CGACTTGCGA ACTTGAAAGG CGTACAGGTG AAAGTGCTTT TGTTTTGGAT TAATATTGTC 361 GAAGTTACTC GTGACGGCGA CGATCTCGAT TTCTCCGTCG GTATTGCTTC TGCTGATTTT 421 GCAATTGATA ACTTCTATGA ATCGCCACAG TGTGGATGTG GATTTGATTG TGTCAATTCT 481 GGAGAAAATG GCACAGGTAA GTTCGATTTG AAGCTGCTTA TCACTTCGTC TTGAATCGTA 541 AATTTTCAGA AATCGACTGT AGATTAAGAT GTTTTAGGAT Predicted gene structure (within gDNA segment 44796 to 46585): Exon 1 45396 45975 ( 580 n); cDNA 1 580 ( 580 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E347597+ 1.000 580 1.000 C PGS_C09HBa0278J12.1+_SGN-E347597+ (45396 45975) Alignment (genomic DNA sequence = upper lines): GGTAACTACG AACAAGATAT GCCTTCTGTA GCCCTTCCCT TATGCATCCT CCTACTCCTA 45455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAACTACG AACAAGATAT GCCTTCTGTA GCCCTTCCCT TATGCATCCT CCTACTCCTA 60 CTCCAACTCT CTGCAGCTTC ACCGGTCGTC GGCGATGAGG ATTCTCAGTC CCCGACGGCG 45515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAACTCT CTGCAGCTTC ACCGGTCGTC GGCGATGAGG ATTCTCAGTC CCCGACGGCG 120 TATGAGATTC TTCAGGAATA CGACTTTCCG GTAGGGATAC TTCCGAAGGG CGTAACAAGG 45575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAGATTC TTCAGGAATA CGACTTTCCG GTAGGGATAC TTCCGAAGGG CGTAACAAGG 180 TACGAACTCG ACAAAACAAC GGGCAATTTC GCCGTTTACT TTAACAAATC GTGCAGTTTC 45635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGAACTCG ACAAAACAAC GGGCAATTTC GCCGTTTACT TTAACAAATC GTGCAGTTTC 240 AGCATAAGCG GCTATAATCT CAAGTATATG AGTAAAATTA CTGGTAAAAT CTCTAAGGAT 45695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATAAGCG GCTATAATCT CAAGTATATG AGTAAAATTA CTGGTAAAAT CTCTAAGGAT 300 CGACTTGCGA ACTTGAAAGG CGTACAGGTG AAAGTGCTTT TGTTTTGGAT TAATATTGTC 45755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTTGCGA ACTTGAAAGG CGTACAGGTG AAAGTGCTTT TGTTTTGGAT TAATATTGTC 360 GAAGTTACTC GTGACGGCGA CGATCTCGAT TTCTCCGTCG GTATTGCTTC TGCTGATTTT 45815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTACTC GTGACGGCGA CGATCTCGAT TTCTCCGTCG GTATTGCTTC TGCTGATTTT 420 GCAATTGATA ACTTCTATGA ATCGCCACAG TGTGGATGTG GATTTGATTG TGTCAATTCT 45875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATTGATA ACTTCTATGA ATCGCCACAG TGTGGATGTG GATTTGATTG TGTCAATTCT 480 GGAGAAAATG GCACAGGTAA GTTCGATTTG AAGCTGCTTA TCACTTCGTC TTGAATCGTA 45935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAAATG GCACAGGTAA GTTCGATTTG AAGCTGCTTA TCACTTCGTC TTGAATCGTA 540 AATTTTCAGA AATCGACTGT AGATTAAGAT GTTTTAGGAT 45975 |||||||||| |||||||||| |||||||||| |||||||||| AATTTTCAGA AATCGACTGT AGATTAAGAT GTTTTAGGAT 580 hqPGS_C09HBa0278J12.1+_SGN-E347597+ (45396 45975) ******************************************************************************** EST sequence 48 +strand 421 n (File: SGN-E338920+) 1 AGCTTCTCCG GTCATCGGCG ATGAGGATTC TCAGTCCCCG ACGGCATACG AGATTCTACA 61 GGAATACGAT ATTCCGGCAG GGATACTTCC GAAAGGCGTA ACAAGGTACG AACTCGACAA 121 AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 181 TGATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGGC TTGCGAAACT 241 GAAAGGCGTA CAGGTGAAAC TGCTTTTTTT TTTTGTCAAT ATTGTGGGAG TTACTCGTGA 301 CGGCGATGAT CTCGGTTTCT CCGTCGGTGT TTCTTCTGTT GATTTTGCAA TTGAGTACTT 361 CTATGAACCG CCAGAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAACGGGAC 421 T Predicted gene structure (within gDNA segment 44744 to 46563): Exon 1 45470 45889 ( 420 n); cDNA 1 420 ( 420 n); score: 0.924 MATCH C09HBa0278J12.1+ SGN-E338920+ 0.924 420 0.998 C PGS_C09HBa0278J12.1+_SGN-E338920+ (45470 45889) Alignment (genomic DNA sequence = upper lines): AGCTTCACCG GTCGTCGGCG ATGAGGATTC TCAGTCCCCG ACGGCGTATG AGATTCTTCA 45529 |||||| ||| ||| |||||| |||||||||| |||||||||| ||||| || | ||||||| || AGCTTCTCCG GTCATCGGCG ATGAGGATTC TCAGTCCCCG ACGGCATACG AGATTCTACA 60 GGAATACGAC TTTCCGGTAG GGATACTTCC GAAGGGCGTA ACAAGGTACG AACTCGACAA 45589 ||||||||| |||||| || |||||||||| ||| |||||| |||||||||| |||||||||| GGAATACGAT ATTCCGGCAG GGATACTTCC GAAAGGCGTA ACAAGGTACG AACTCGACAA 120 AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 45649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACGGGC AATTTCGCCG TTTACTTTAA CAAATCGTGC AGTTTCAGCA TAAGCGGCTA 180 TAATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGAC TTGCGAACTT 45709 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||| | TGATCTCAAG TATATGAGTA AAATTACTGG TAAAATCTCT AAGGATCGGC TTGCGAAACT 240 GAAAGGCGTA CAGGTGAAAG TGCTTTTGTT TTGGATTAAT ATTGTCGAAG TTACTCGTGA 45769 |||||||||| ||||||||| ||||||| || || | ||| ||||| | || |||||||||| GAAAGGCGTA CAGGTGAAAC TGCTTTTTTT TTTTGTCAAT ATTGTGGGAG TTACTCGTGA 300 CGGCGACGAT CTCGATTTCT CCGTCGGTAT TGCTTCTGCT GATTTTGCAA TTGATAACTT 45829 |||||| ||| |||| ||||| |||||||| | | |||||| | |||||||||| |||| |||| CGGCGATGAT CTCGGTTTCT CCGTCGGTGT TTCTTCTGTT GATTTTGCAA TTGAGTACTT 360 CTATGAATCG CCACAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAATGGCAC 45889 ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||| |||| || || CTATGAACCG CCAGAGTGTG GATGTGGATT TGATTGTGTC AATTCTGGAG AAAACGGGAC 420 hqPGS_C09HBa0278J12.1+_SGN-E338920+ (45470 45889) ******************************************************************************** EST sequence 100 +strand 616 n (File: SGN-E308953+) 1 TCGATAAGGA CACCGGAAAA TTCAGTGTAC ATCTTAGTGG GTCTTGCAGT TTCGCATTAG 61 AAGGGTCTTA TCAGCTTAGG TATCAATCGA GATTCGGTGG GTACATAGCT AAAAATAGGC 121 TGTCAAGCCT ACATGGGGTT AGTGTAAAAA TTCTGTTTCT GTGGCTGAAT ATTGTGGAGG 181 TTGTTAAGAA TGGTGACAAT CTTGAGTTCT CTGTTGGAAT TGCTTCGGCT AGCTTTCCCA 241 CTTACAATTT CTTGGTTTGT CCACAATGTG GATGTGGATT GAATTGCAAT AGCAATGGAC 301 ATATTCTAAA GATTCGAAAC AGTAACCTTG TCTCTTCTGT TTAGCTGCAC ACAGAAGGAT 361 GATGGAGCCT GAGTTTACTG AAAGAGATAC TTGCAACTCA TGGAAAAGAT CAGGTGACAT 421 GGTTGCAGTG TACAGAAAGC CTGAAATGGT CATTCTCCTC CTTCCTCCTC ATCATAGTTG 481 CAATACAAAA AGTCGAAAAC TCATGTGTTC ATTTACATTA TCGTTATGTT ATCTACAATT 541 TCGTCTTTGC TCTGTCATGG ATACAAAATA TTCTTGAAAT TGCTGTTTAT AACGAGATTC 601 TTTTCCATCA AAAAAA Predicted gene structure (within gDNA segment 46666 to 51817): Exon 1 47266 47651 ( 386 n); cDNA 1 386 ( 386 n); score: 1.000 Intron 1 47652 50923 (3272 n); Pd: 0.997 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 50924 51147 ( 224 n); cDNA 387 610 ( 224 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E308953+ 1.000 610 0.990 C PGS_C09HBa0278J12.1+_SGN-E308953+ (47266 47651,50924 51147) Alignment (genomic DNA sequence = upper lines): TCGATAAGGA CACCGGAAAA TTCAGTGTAC ATCTTAGTGG GTCTTGCAGT TTCGCATTAG 47325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATAAGGA CACCGGAAAA TTCAGTGTAC ATCTTAGTGG GTCTTGCAGT TTCGCATTAG 60 AAGGGTCTTA TCAGCTTAGG TATCAATCGA GATTCGGTGG GTACATAGCT AAAAATAGGC 47385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTCTTA TCAGCTTAGG TATCAATCGA GATTCGGTGG GTACATAGCT AAAAATAGGC 120 TGTCAAGCCT ACATGGGGTT AGTGTAAAAA TTCTGTTTCT GTGGCTGAAT ATTGTGGAGG 47445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAGCCT ACATGGGGTT AGTGTAAAAA TTCTGTTTCT GTGGCTGAAT ATTGTGGAGG 180 TTGTTAAGAA TGGTGACAAT CTTGAGTTCT CTGTTGGAAT TGCTTCGGCT AGCTTTCCCA 47505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAGAA TGGTGACAAT CTTGAGTTCT CTGTTGGAAT TGCTTCGGCT AGCTTTCCCA 240 CTTACAATTT CTTGGTTTGT CCACAATGTG GATGTGGATT GAATTGCAAT AGCAATGGAC 47565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACAATTT CTTGGTTTGT CCACAATGTG GATGTGGATT GAATTGCAAT AGCAATGGAC 300 ATATTCTAAA GATTCGAAAC AGTAACCTTG TCTCTTCTGT TTAGCTGCAC ACAGAAGGAT 47625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCTAAA GATTCGAAAC AGTAACCTTG TCTCTTCTGT TTAGCTGCAC ACAGAAGGAT 360 GATGGAGCCT GAGTTTACTG AAAGAGGTTA GTTCCAGTTT TTGAATATTT CTGAATATAT 47685 |||||||||| |||||||||| |||||| GATGGAGCCT GAGTTTACTG AAAGAG.... .......... .......... .......... 386 GCTACTACTT GGTTGCTCAC TGACTTATAC TTGATTCAAT TTATGAATTT ATCAGATGTT 47745 .......... .......... .......... .......... .......... .......... 386 TAATTCTTCA ATTTGTGGTG AAGCATTACA AATTTCATGA GTATGTGTAT GGTTTAGGTT 47805 .......... .......... .......... .......... .......... .......... 386 GACATTGTTA ACAGTTGGAG AATATTCTTG AAGCTTTGCA TCTTAATCAA ATAAATAAAA 47865 .......... .......... .......... .......... .......... .......... 386 CTGTCACTTA TCAAGAAAAG TATTAAACAT CTGATAAGTT CGCAGTCTAT TAGTTATCGC 47925 .......... .......... .......... .......... .......... .......... 386 TCTTAAATTT CGCGGCCTGA AACTAAATGA AAGAATTCAA CATAATAGAA TAAAGATAAG 47985 .......... .......... .......... .......... .......... .......... 386 GAAAAAGAAC CAGAAGAAGA GCTTGATCTA AGACCTATCT TTGATGACAG AAAATCCACA 48045 .......... .......... .......... .......... .......... .......... 386 ATACATGCCC ATCTTTGTTT AACAAGACAC ATTTTGAATA ATAAGAGAGT TACAATTATG 48105 .......... .......... .......... .......... .......... .......... 386 TGATTTTTTA GAGAAAACAT GGTCAAATTG TATTCTGATG TATTATTCTC GTTCATGTTT 48165 .......... .......... .......... .......... .......... .......... 386 AAGATATTTT AGTATGGAAG TAGGTTACAT TTTAACTGGT GGAGAGAAAC AAACAGTTAA 48225 .......... .......... .......... .......... .......... .......... 386 AAAGGGGACG GGGTAAGGAG AAGTGAATGA CAACTTTGAA AAGGACTAAA AGCGAAGTGA 48285 .......... .......... .......... .......... .......... .......... 386 AATCATCTCT ACATTGACCT TACATGTGAA ACTACAAGAA GAGACCATGT ATATGTATTT 48345 .......... .......... .......... .......... .......... .......... 386 AACCATGTTT AAAAAATTTA ACGGGTCAAG AGAAAGTAGT CTTCCCTTTG TGGTGATTTT 48405 .......... .......... .......... .......... .......... .......... 386 TTTATCAAGA GGATGCTACA AGAATTTTTA TGTTAGAACA TTGGGCCAGA TTTGCTAGAG 48465 .......... .......... .......... .......... .......... .......... 386 TTCTTTCTAT TGAATTATTT TGTTTGTGAG TCCATATTAT CAGTAAAGCC ACCTTTCTAC 48525 .......... .......... .......... .......... .......... .......... 386 TTCTCTCAAC TTAATTACAA GGCTTAAGGC TTTTGAGAGG GTTCAAACTT GTGCATAATA 48585 .......... .......... .......... .......... .......... .......... 386 ACTCAGACAT ATCATGTGCT ATTATTTGGA AAAGAACATA TGGTCCTAGA CCTTATCTTA 48645 .......... .......... .......... .......... .......... .......... 386 GTTGATCAAA TAAAGCATGG GCTGCGTCTA TATCCCCTTA TTCAATGATT CAAGGATTTT 48705 .......... .......... .......... .......... .......... .......... 386 AGATAGGATG CTCTCTCACC GTAAGATCAA AGCCCTGAGG TATATTGCTC AAACACCCAA 48765 .......... .......... .......... .......... .......... .......... 386 GGGTCGATTG GTTTGGAGCA AGTTATCTTC GGATTATAAT CCCACATCCC TTATGGTACG 48825 .......... .......... .......... .......... .......... .......... 386 GAATAATATT AGGCTTAATA TATAGATAAC CCCTTATACT TGTCAGAATA TTCCATTTAG 48885 .......... .......... .......... .......... .......... .......... 386 ACACTCGAAC GGAGTCATAT TCCAATTGAA CAGCCCAACT CCAAATAAGA TGTCCCAATT 48945 .......... .......... .......... .......... .......... .......... 386 AGACACTTCC TTTTAAATTT CGGAAAAACT TAACGCATGT TTTCATTTGT CTATTTAGGT 49005 .......... .......... .......... .......... .......... .......... 386 AGTTAACTTA ACCACATAAT ATATATTATT TCCTTTAATT ATATGCATCA ACCTCAAGTA 49065 .......... .......... .......... .......... .......... .......... 386 GGAAACGCCT GAGGTTTATG ACTTTTTGAG GCAAGTGTAT ATAATTAAAG TAAATGACAT 49125 .......... .......... .......... .......... .......... .......... 386 ATTTTATGTG GTTAATGTAT CTACCTAATA AACGATAGAG AATGTCAAAT TAAGTTCAAA 49185 .......... .......... .......... .......... .......... .......... 386 ATTTAAACCG AAAGTGTCTA ATGGGAACTC TTTATAAGGA GTTGAGGTGT TCAATTGGAA 49245 .......... .......... .......... .......... .......... .......... 386 GAGACTTAGT TTGAGTATCT AAATAAAGTA TCTTGGCAAG TGTAAGGGGC TGACTATGTA 49305 .......... .......... .......... .......... .......... .......... 386 TTAAGTCAAT TATGTACAAA ATTTATATTG TATCAGCTAA TGCATGCAGC CAAACACTGA 49365 .......... .......... .......... .......... .......... .......... 386 ATAAATGTAG TCCTAAATCT TATACCGAGA ACTTGCCATA TGGTACATGC ATATAAGAGT 49425 .......... .......... .......... .......... .......... .......... 386 TTCTAGGTTA ATTTTCGTTC TTCGTTAATA TGAAAGTTTG AAGCAATGGA ACCCTCCCCT 49485 .......... .......... .......... .......... .......... .......... 386 CAATTTATGT TAGCTTTTCT TTTTTTCATT CTTCTTAGAG AGTGAAACAA TAAAAAAGCT 49545 .......... .......... .......... .......... .......... .......... 386 TCTTTTTCCG TTGTTAGGCG TAGAAAGTTC TATTGAGCTC GTTACGCCCC ACCCTCTAGC 49605 .......... .......... .......... .......... .......... .......... 386 CTCTCTCTTT GTCATGGAAG GGGAAGAGTT ATACAAGCTT AAGCATCCAT ACTTTACGCA 49665 .......... .......... .......... .......... .......... .......... 386 TCTTTCCCGA GGGCCAAATG GATCTTTATT CTGAGACATG CAATAAAGCA TTGATCAGCA 49725 .......... .......... .......... .......... .......... .......... 386 CTAGACTCTC GATAGACTGC TTTTCAATTT TGTGTTCTCC CCTCTTTGGT GCTTCTAGTT 49785 .......... .......... .......... .......... .......... .......... 386 AATAGTTGAA GTTTGCAAGA GCTTTCCCTG TTTTTACATC CTAGTTAGAA CACATTTCTG 49845 .......... .......... .......... .......... .......... .......... 386 CTGTTGGTTC ACCACGACGG TAACTGATGC TTCAACAATA TGACTCGTAC ATACTACTGT 49905 .......... .......... .......... .......... .......... .......... 386 GGTGCCATTT TTCAAAATCA CAATTCACAA CTGTACGAGA TGCTGCCATT ACAAATCTGG 49965 .......... .......... .......... .......... .......... .......... 386 TAACTACCAA CTCACCAGAG TCTGGACCAT GATTTTTTGC TGAAAGCATG AGTACAGGGA 50025 .......... .......... .......... .......... .......... .......... 386 TCTCTATTTC TTCCTGAAGG TTCTTTGTTT GAAAACAAGA GAATAAGAAG CTTGCTATTA 50085 .......... .......... .......... .......... .......... .......... 386 GTTTACTAGT GCCATCAAGC AGTTGAGGTT AATGTAGTTG GCTAATCTTT TGCATGAAAT 50145 .......... .......... .......... .......... .......... .......... 386 GTTAATAAGA ATATCATGGC CATCAAGTGA GGGGGGGGGT TGCTGGAATT GTATGTACCC 50205 .......... .......... .......... .......... .......... .......... 386 AAGCTTGCTA ATGGTTGACA CTATTAACTA TCCTACATTG GTTGAATAAA TGGGTTGTTC 50265 .......... .......... .......... .......... .......... .......... 386 TCTCTTTATA TAATCTTGAG AGATCCTCAT CTCATGAGCT TACACTGGGT GTAAATTAGA 50325 .......... .......... .......... .......... .......... .......... 386 CCCAAGACCC ACTTTCTTCA CATAATACCA GAGCTTGATC TATTCTTGTT CTCGGTTTCC 50385 .......... .......... .......... .......... .......... .......... 386 CGATGTTGGT TCCTTGTGTT ATATTGTACA TGCATTGGTG CAGGTGTGGT AATTGTCCCA 50445 .......... .......... .......... .......... .......... .......... 386 CATTGGTTGA GAAAATGGAT TGTTGCAGAC ATTCTGGGGT TGAGTTATGG TGTCATACAC 50505 .......... .......... .......... .......... .......... .......... 386 ATATGAATTC CATGTAGGAC AACAAAAACC ATTGAAGCGA TATGTATGAA TAGGAAAATA 50565 .......... .......... .......... .......... .......... .......... 386 AGAGTTTGTA TATGCTGAGA GGCTCTGTTT GATCAAACAG TAAACTGAGG CTGAAATCCT 50625 .......... .......... .......... .......... .......... .......... 386 TTCGAGGCAG CGAATAAATT CGTGTGTAAT AATTCACTAA AATTGCAATA AGTAAGAAAT 50685 .......... .......... .......... .......... .......... .......... 386 ATAAACCTAT AACTAAATAA ATAATATTTG GTCCAATACT AAAAACCTTT GATGCACTTG 50745 .......... .......... .......... .......... .......... .......... 386 TATAGTACAT TGTGTGAGAG ACAGACCTGC AGCCACAAGA TCTGCTTATT TCCTCTGCCC 50805 .......... .......... .......... .......... .......... .......... 386 TTTCTCTTTC TCTTCTGTAG CAACCTATGG CACTTTATAG TGTATTTGAC TTCTGCATTG 50865 .......... .......... .......... .......... .......... .......... 386 CCTCGAAAAT TAGAAGGAAG ATATCTAATA CATGACTCTA TTTGTTGAGT GCTTGCAGAT 50925 || .......... .......... .......... .......... .......... ........AT 388 ACTTGCAACT CATGGAAAAG ATCAGGTGAC ATGGTTGCAG TGTACAGAAA GCCTGAAATG 50985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGCAACT CATGGAAAAG ATCAGGTGAC ATGGTTGCAG TGTACAGAAA GCCTGAAATG 448 GTCATTCTCC TCCTTCCTCC TCATCATAGT TGCAATACAA AAAGTCGAAA ACTCATGTGT 51045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTCTCC TCCTTCCTCC TCATCATAGT TGCAATACAA AAAGTCGAAA ACTCATGTGT 508 TCATTTACAT TATCGTTATG TTATCTACAA TTTCGTCTTT GCTCTGTCAT GGATACAAAA 51105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTACAT TATCGTTATG TTATCTACAA TTTCGTCTTT GCTCTGTCAT GGATACAAAA 568 TATTCTTGAA ATTGCTGTTT ATAACGAGAT TCTTTTCCAT CA 51147 |||||||||| |||||||||| |||||||||| |||||||||| || TATTCTTGAA ATTGCTGTTT ATAACGAGAT TCTTTTCCAT CA 610 hqPGS_C09HBa0278J12.1+_SGN-E308953+ (47266 47651,50924 51147) ******************************************************************************** EST sequence 101 +strand 315 n (File: SGN-E290047+) 1 ATTAGAAGGG TCTTATCAGC TTAGGTATCA ATCGAGATTC GGTGGGTACA TAGCTAAAAA 61 TAGGCTGTCA AGCCTACATG GGGTTAGTGT AAAAATTCTG TTTCTGTGGC TGAATATTGT 121 GGAGGTTGTT AAGAATGGTG ACAATCTTGA GTTCTCTGTT GGAATTGCTT CGGCTAGCTT 181 TCCCACTTAC AATTTCTTGG TTTGTCCACA ATGTGGATGT GGATTGAATT GCAATAGCAA 241 TGGACATATT CTAAAGATTC GAAACAGTAA CCTTGTCTCT TCTGTTTAGC TGCACACAGA 301 AGGATGATGG AGCCT Predicted gene structure (within gDNA segment 46721 to 48245): Exon 1 47321 47635 ( 315 n); cDNA 1 315 ( 315 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E290047+ 1.000 315 1.000 C PGS_C09HBa0278J12.1+_SGN-E290047+ (47321 47635) Alignment (genomic DNA sequence = upper lines): ATTAGAAGGG TCTTATCAGC TTAGGTATCA ATCGAGATTC GGTGGGTACA TAGCTAAAAA 47380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGAAGGG TCTTATCAGC TTAGGTATCA ATCGAGATTC GGTGGGTACA TAGCTAAAAA 60 TAGGCTGTCA AGCCTACATG GGGTTAGTGT AAAAATTCTG TTTCTGTGGC TGAATATTGT 47440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGCTGTCA AGCCTACATG GGGTTAGTGT AAAAATTCTG TTTCTGTGGC TGAATATTGT 120 GGAGGTTGTT AAGAATGGTG ACAATCTTGA GTTCTCTGTT GGAATTGCTT CGGCTAGCTT 47500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTTGTT AAGAATGGTG ACAATCTTGA GTTCTCTGTT GGAATTGCTT CGGCTAGCTT 180 TCCCACTTAC AATTTCTTGG TTTGTCCACA ATGTGGATGT GGATTGAATT GCAATAGCAA 47560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCACTTAC AATTTCTTGG TTTGTCCACA ATGTGGATGT GGATTGAATT GCAATAGCAA 240 TGGACATATT CTAAAGATTC GAAACAGTAA CCTTGTCTCT TCTGTTTAGC TGCACACAGA 47620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACATATT CTAAAGATTC GAAACAGTAA CCTTGTCTCT TCTGTTTAGC TGCACACAGA 300 AGGATGATGG AGCCT 47635 |||||||||| ||||| AGGATGATGG AGCCT 315 hqPGS_C09HBa0278J12.1+_SGN-E290047+ (47321 47635) ******************************************************************************** EST sequence 76 +strand 391 n (File: SGN-E318410+) 1 AGAGAGAGAA ACTAGTCTCG AGTTTTTTTT TTTTTTTTTT GTAATAATTC ACTAAAATTG 61 CAAGAAGTAA GAAATATAAA CCTATTACTA AATAAATAAT ATTTGGTCCA ATACTAAAAA 121 CCTTTGATGC ACTTGTATAG TACATTGTGT GAGAGACAGA CCTGCGCCCA CAAGATCTGC 181 TTATTTGCTC TGCCCTTTCT CTTTCTCTTA TGTAGCAACC TATGGCACTT TATAGTGGGT 241 TTGACTTCTG CATTGCCTCT AAAATTATAA GGAAGATATC TAGTACATGA CTCTATTTGT 301 TGAGTGCTTG CGGATACTTG CAACTCATGG GAAAGATCAG GCGACATGGT TGCACTGTAC 361 AGAAAGCCTG AAATGGGCAT TCTCCTCCTT C Predicted gene structure (within gDNA segment 49660 to 52160): Exon 1 50650 51001 ( 352 n); cDNA 40 391 ( 352 n); score: 0.955 PPA cDNA 39 22 MATCH C09HBa0278J12.1+ SGN-E318410+ 0.955 352 0.900 C PGS_C09HBa0278J12.1+_SGN-E318410+ (50650 51001) Alignment (genomic DNA sequence = upper lines): TGTAATAATT CACTAAAATT GCAATAAGTA AGAAATATAA ACCTATAACT AAATAAATAA 50709 |||||||||| |||||||||| |||| ||||| |||||||||| |||||| ||| |||||||||| TGTAATAATT CACTAAAATT GCAAGAAGTA AGAAATATAA ACCTATTACT AAATAAATAA 99 TATTTGGTCC AATACTAAAA ACCTTTGATG CACTTGTATA GTACATTGTG TGAGAGACAG 50769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTGGTCC AATACTAAAA ACCTTTGATG CACTTGTATA GTACATTGTG TGAGAGACAG 159 ACCTGCAGCC ACAAGATCTG CTTATTTCCT CTGCCCTTTC TCTTTCTCTT CTGTAGCAAC 50829 |||||| || |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| ACCTGCGCCC ACAAGATCTG CTTATTTGCT CTGCCCTTTC TCTTTCTCTT ATGTAGCAAC 219 CTATGGCACT TTATAGTGTA TTTGACTTCT GCATTGCCTC GAAAATTAGA AGGAAGATAT 50889 |||||||||| |||||||| |||||||||| |||||||||| ||||||| | |||||||||| CTATGGCACT TTATAGTGGG TTTGACTTCT GCATTGCCTC TAAAATTATA AGGAAGATAT 279 CTAATACATG ACTCTATTTG TTGAGTGCTT GCAGATACTT GCAACTCATG GAAAAGATCA 50949 ||| |||||| |||||||||| |||||||||| || ||||||| |||||||||| | |||||||| CTAGTACATG ACTCTATTTG TTGAGTGCTT GCGGATACTT GCAACTCATG GGAAAGATCA 339 GGTGACATGG TTGCAGTGTA CAGAAAGCCT GAAATGGTCA TTCTCCTCCT TC 51001 || ||||||| ||||| |||| |||||||||| ||||||| || |||||||||| || GGCGACATGG TTGCACTGTA CAGAAAGCCT GAAATGGGCA TTCTCCTCCT TC 391 hqPGS_C09HBa0278J12.1+_SGN-E318410+ (50650 51001) ******************************************************************************** EST sequence 245 +strand 606 n (File: SGN-E552893+) 1 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 61 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 121 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 181 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 241 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 301 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 361 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 421 TTATAGTATT AGTGTTAATC TTCGGGCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAN TTCGGGGGGG 541 GGGGGCCCCC CCCCCCCCCC CCCAAGGGGG GGTTATATTA ATTTCGGGGG GGGGTTTTTT 601 AAAAAA Predicted gene structure (within gDNA segment 56795 to 53585): Exon 1 56195 55744 ( 452 n); cDNA 1 452 ( 452 n); score: 0.998 Intron 1 55743 54806 ( 938 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 54805 54780 ( 26 n); cDNA 453 478 ( 26 n); score: 0.808 Intron 2 54779 54700 ( 80 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.73) Exon 3 54699 54652 ( 48 n); cDNA 479 526 ( 48 n); score: 0.729 MATCH C09HBa0278J12.1- SGN-E552893+ 0.998 526 0.868 C PGS_C09HBa0278J12.1-_SGN-E552893+ (56195 55744,54805 54780,54699 54652) Alignment (genomic DNA sequence = upper lines): CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 60 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 120 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 180 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 55956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 240 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 55896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 300 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 55836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 360 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 55776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 420 TTATAGTATT AGTGTTAATC TTCGGGCTTT AGATCCTATT TTTTTCTTCT TTTTTTTTTG 55716 |||||||||| |||||||||| |||||||||| | TTATAGTATT AGTGTTAATC TTCGGGCTTT AA........ .......... .......... 452 AATTCTTCAA TCTCCAGGTT TACGTATTTA TTTTTTGTTT CTTTTGGGAA AATCTCATAA 55656 .......... .......... .......... .......... .......... .......... 452 CATTCTTGCA ACTTTTTTTA ATCAAACTAA TGTTATAATC ATATCTTAGT ATTTTTAAGA 55596 .......... .......... .......... .......... .......... .......... 452 TTATCATCAA TATATTAATA AAATAAGTGA TATTCAAAAG TTATATCAAA AGTATTATAA 55536 .......... .......... .......... .......... .......... .......... 452 ATTATAATCT TTTATATATT TATATTTTTA AAATGTTAAT CAAATTTTTT ATAATTTTAA 55476 .......... .......... .......... .......... .......... .......... 452 CTCTAAAAAT AGAGATCATA ACAAACAATA ATGGATAGAG GAAATACAAC AGAAATAACA 55416 .......... .......... .......... .......... .......... .......... 452 TATACGTAAT AGAAAAGCAT GATTTTTCTA AATAAATTAA ATATTTATTT TATAGAAATA 55356 .......... .......... .......... .......... .......... .......... 452 AAAAAATTGA AAGTAACTTT CTTTATTACA ATTATAGACG ATATAATACA CATAGGGGTT 55296 .......... .......... .......... .......... .......... .......... 452 GTTTGGTACA AACATTGATA ATGCATGGAT TAATAATGCA TGGATTAGTA ATGTACGGAT 55236 .......... .......... .......... .......... .......... .......... 452 TAATAGTGCA AGGATTATTT TTTTGTAAAT GTTTGGTTCA CTACTTTCTA CCTAATTTTG 55176 .......... .......... .......... .......... .......... .......... 452 TCTTTAATTT ATAATTTTAC AAAAAAATTC TTTTCTATTA TACCCTCGTA TTATTATGAG 55116 .......... .......... .......... .......... .......... .......... 452 TGTTTATTTC ATGTAATTGG GTCAAGGTAA TAACCATCGG ACCGGATAAT TTTTTGAAAG 55056 .......... .......... .......... .......... .......... .......... 452 AATTTTTTGT TTCATTTAAT TAGTTAAATC ATATACATAT ATACAAAATT ATTATTAATT 54996 .......... .......... .......... .......... .......... .......... 452 TTAAGGTAAG ATGTACCATT AAGAGGATCA ATGATGGCAC AATATACTTC TAATTTTTTG 54936 .......... .......... .......... .......... .......... .......... 452 TGGGTTAAGT ATATATCTTA AATTTAACAT AGATTAAGAC TACTTAAATT GTTAATACCT 54876 .......... .......... .......... .......... .......... .......... 452 AAAGCTTATT TTTATTTTTA TTTTTATTTT TAAAACAAAT AGTTCAAGTG GTAATTGACA 54816 .......... .......... .......... .......... .......... .......... 452 AATTATCTTG AATATAAAAA TAAAAAAAAA TAAAGAATTT TTTTTTAGTA AAATCATTAA 54756 || | ||||| ||||||||| ||| | .......... AAAAAAAAAA AAAAAAAAAA AAAAAA.... .......... .......... 478 ATTACACCAA ACGAATTTGG AGAATTAAAA AGGAACATTT ATAACCACTC CAATACAAAT 54696 ||| .......... .......... .......... .......... .......... ......AAAA 482 AAAAAGGAAA TTAAATTACA AAAGAAATAT AAAAAAAGAA TAAA 54652 ||||| ||| ||| | | ||| ||| | ||||||| || ||| AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA 526 hqPGS_C09HBa0278J12.1-_SGN-E552893+ (56195 55744,54805 54780,54699 54652) ******************************************************************************** EST sequence 266 +strand 770 n (File: SGN-E554174+) 1 TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG 61 CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT 121 CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT 181 CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG 241 GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG 301 CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC 361 TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG 421 AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT 481 CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA 541 AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA GCTTATTGTT 601 ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA AATAATTATA GTATTAGTGT 661 TAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAANANAA AAAAAAAAAA AAAAAAAAAA 721 AAAAAAAAAN NNGGGGGGGG GGGGGGCGGC CCCCCCCCCC CCCAGGGGGG Predicted gene structure (within gDNA segment 57478 to 54078): Exon 1 56878 56655 ( 224 n); cDNA 1 224 ( 224 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 225 662 ( 438 n); score: 1.000 Intron 2 55758 54806 ( 953 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 3 54805 54782 ( 24 n); cDNA 663 686 ( 24 n); score: 0.833 PPA cDNA 720 730 MATCH C09HBa0278J12.1- SGN-E554174+ 1.000 686 0.891 C PGS_C09HBa0278J12.1-_SGN-E554174+ (56878 56655,56196 55759,54805 54782) Alignment (genomic DNA sequence = upper lines): TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG 56819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG 60 CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT 56759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT 120 CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT 56699 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT 180 CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGTAATG ATCATAACGT 56639 |||||||||| |||||||||| |||||||||| |||||||||| |||| CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAG...... .......... 224 TCGTAATATG AATCTAAACA GGAAATATTC AAATTTTGAA ATCGGTGAAC GTGAATGTGT 56579 .......... .......... .......... .......... .......... .......... 224 ACCGCTGTTT CCGTTGAGTT TTTCGGTGTA AATCTAAAAT TTTCTCAGCT ATATTGCATC 56519 .......... .......... .......... .......... .......... .......... 224 TGAGTTAAAT TCTGTGGTTT TTTCACAGCA TTATTTTAGA ATTATGCTAT GCATAACGAT 56459 .......... .......... .......... .......... .......... .......... 224 AACAGGGGAT CGAAGTTCTC TGTTTTTCTT AGCTGGTAAT AACCGAAACA TCCGTTTATC 56399 .......... .......... .......... .......... .......... .......... 224 CCCTGGATAA AAGGCGTTAG CATACAACTT TTTTAAATCA ACAAGCGTGA TTGTCGCTGC 56339 .......... .......... .......... .......... .......... .......... 224 ACATTTTGAA CTTTTTCTTT TATCAATGTA ATAGTATATT TTATACGTAC TTGGATTTTT 56279 .......... .......... .......... .......... .......... .......... 224 TTTGTTCGTA GCAAAAACAG AGGATTGTAT CGGCGGCTAA TTTGCTGTGA TGTGAATGTG 56219 .......... .......... .......... .......... .......... .......... 224 AATTTTTTGT GTGTATGTAC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG 56159 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG 262 GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG 56099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG 322 TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA 56039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA 382 ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT 55979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT 442 GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG 55919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG 502 AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT GTGAAATTTA 55859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT GTGAAATTTA 562 CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGTTAT ATCTTTCTTT TATTAGTATC 55799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGTTAT ATCTTTCTTT TATTAGTATC 622 TTTTATTCAT GCAAATGAAA TAATTATAGT ATTAGTGTTA ATCTTCGGGC TTTAGATCCT 55739 |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTCAT GCAAATGAAA TAATTATAGT ATTAGTGTTA .......... .......... 662 ATTTTTTTCT TCTTTTTTTT TTGAATTCTT CAATCTCCAG GTTTACGTAT TTATTTTTTG 55679 .......... .......... .......... .......... .......... .......... 662 TTTCTTTTGG GAAAATCTCA TAACATTCTT GCAACTTTTT TTAATCAAAC TAATGTTATA 55619 .......... .......... .......... .......... .......... .......... 662 ATCATATCTT AGTATTTTTA AGATTATCAT CAATATATTA ATAAAATAAG TGATATTCAA 55559 .......... .......... .......... .......... .......... .......... 662 AAGTTATATC AAAAGTATTA TAAATTATAA TCTTTTATAT ATTTATATTT TTAAAATGTT 55499 .......... .......... .......... .......... .......... .......... 662 AATCAAATTT TTTATAATTT TAACTCTAAA AATAGAGATC ATAACAAACA ATAATGGATA 55439 .......... .......... .......... .......... .......... .......... 662 GAGGAAATAC AACAGAAATA ACATATACGT AATAGAAAAG CATGATTTTT CTAAATAAAT 55379 .......... .......... .......... .......... .......... .......... 662 TAAATATTTA TTTTATAGAA ATAAAAAAAT TGAAAGTAAC TTTCTTTATT ACAATTATAG 55319 .......... .......... .......... .......... .......... .......... 662 ACGATATAAT ACACATAGGG GTTGTTTGGT ACAAACATTG ATAATGCATG GATTAATAAT 55259 .......... .......... .......... .......... .......... .......... 662 GCATGGATTA GTAATGTACG GATTAATAGT GCAAGGATTA TTTTTTTGTA AATGTTTGGT 55199 .......... .......... .......... .......... .......... .......... 662 TCACTACTTT CTACCTAATT TTGTCTTTAA TTTATAATTT TACAAAAAAA TTCTTTTCTA 55139 .......... .......... .......... .......... .......... .......... 662 TTATACCCTC GTATTATTAT GAGTGTTTAT TTCATGTAAT TGGGTCAAGG TAATAACCAT 55079 .......... .......... .......... .......... .......... .......... 662 CGGACCGGAT AATTTTTTGA AAGAATTTTT TGTTTCATTT AATTAGTTAA ATCATATACA 55019 .......... .......... .......... .......... .......... .......... 662 TATATACAAA ATTATTATTA ATTTTAAGGT AAGATGTACC ATTAAGAGGA TCAATGATGG 54959 .......... .......... .......... .......... .......... .......... 662 CACAATATAC TTCTAATTTT TTGTGGGTTA AGTATATATC TTAAATTTAA CATAGATTAA 54899 .......... .......... .......... .......... .......... .......... 662 GACTACTTAA ATTGTTAATA CCTAAAGCTT ATTTTTATTT TTATTTTTAT TTTTAAAACA 54839 .......... .......... .......... .......... .......... .......... 662 AATAGTTCAA GTGGTAATTG ACAAATTATC TTGAATATAA AAATAAAAAA AAATAAA 54782 || | || ||| |||||| ||| ||| .......... .......... .......... ...AAAAAAA AAAAAAAAAA AAAAAAA 686 hqPGS_C09HBa0278J12.1-_SGN-E554174+ (56878 56655,56196 55759,54805 54782) ******************************************************************************** EST sequence 159 +strand 384 n (File: SGN-E551314+) 1 AGAGATGCAG TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC 61 CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA 121 GGAACTGTTT TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA 181 AATTTTAAGC TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA 241 TAATTATAGT ATTAGTGTTA ATCTTCGGGC TTTAAAAAAA AAAAAAAAAA AAAAAAAAAA 301 AAAAAAAAAA ACCCCCGGGG GGGGGCCGGG ACCCCATTTC CCCCAAAGGG GGGCCTAAAA 361 AAAAAACNNN NGGNGCTTCC TTTG Predicted gene structure (within gDNA segment 56708 to 54035): Exon 1 56008 55744 ( 265 n); cDNA 11 275 ( 265 n); score: 0.996 Intron 1 55743 54806 ( 938 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 54805 54782 ( 24 n); cDNA 276 299 ( 24 n); score: 0.833 PPA cDNA 357 367 MATCH C09HBa0278J12.1- SGN-E551314+ 0.996 289 0.753 C PGS_C09HBa0278J12.1-_SGN-E551314+ (56008 55744,54805 54782) Alignment (genomic DNA sequence = upper lines): TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 55949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 70 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 55889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 130 TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 55829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 190 TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 55769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 250 ATTAGTGTTA ATCTTCGGGC TTTAGATCCT ATTTTTTTCT TCTTTTTTTT TTGAATTCTT 55709 |||||||||| |||||||||| |||| ATTAGTGTTA ATCTTCGGGC TTTAA..... .......... .......... .......... 275 CAATCTCCAG GTTTACGTAT TTATTTTTTG TTTCTTTTGG GAAAATCTCA TAACATTCTT 55649 .......... .......... .......... .......... .......... .......... 275 GCAACTTTTT TTAATCAAAC TAATGTTATA ATCATATCTT AGTATTTTTA AGATTATCAT 55589 .......... .......... .......... .......... .......... .......... 275 CAATATATTA ATAAAATAAG TGATATTCAA AAGTTATATC AAAAGTATTA TAAATTATAA 55529 .......... .......... .......... .......... .......... .......... 275 TCTTTTATAT ATTTATATTT TTAAAATGTT AATCAAATTT TTTATAATTT TAACTCTAAA 55469 .......... .......... .......... .......... .......... .......... 275 AATAGAGATC ATAACAAACA ATAATGGATA GAGGAAATAC AACAGAAATA ACATATACGT 55409 .......... .......... .......... .......... .......... .......... 275 AATAGAAAAG CATGATTTTT CTAAATAAAT TAAATATTTA TTTTATAGAA ATAAAAAAAT 55349 .......... .......... .......... .......... .......... .......... 275 TGAAAGTAAC TTTCTTTATT ACAATTATAG ACGATATAAT ACACATAGGG GTTGTTTGGT 55289 .......... .......... .......... .......... .......... .......... 275 ACAAACATTG ATAATGCATG GATTAATAAT GCATGGATTA GTAATGTACG GATTAATAGT 55229 .......... .......... .......... .......... .......... .......... 275 GCAAGGATTA TTTTTTTGTA AATGTTTGGT TCACTACTTT CTACCTAATT TTGTCTTTAA 55169 .......... .......... .......... .......... .......... .......... 275 TTTATAATTT TACAAAAAAA TTCTTTTCTA TTATACCCTC GTATTATTAT GAGTGTTTAT 55109 .......... .......... .......... .......... .......... .......... 275 TTCATGTAAT TGGGTCAAGG TAATAACCAT CGGACCGGAT AATTTTTTGA AAGAATTTTT 55049 .......... .......... .......... .......... .......... .......... 275 TGTTTCATTT AATTAGTTAA ATCATATACA TATATACAAA ATTATTATTA ATTTTAAGGT 54989 .......... .......... .......... .......... .......... .......... 275 AAGATGTACC ATTAAGAGGA TCAATGATGG CACAATATAC TTCTAATTTT TTGTGGGTTA 54929 .......... .......... .......... .......... .......... .......... 275 AGTATATATC TTAAATTTAA CATAGATTAA GACTACTTAA ATTGTTAATA CCTAAAGCTT 54869 .......... .......... .......... .......... .......... .......... 275 ATTTTTATTT TTATTTTTAT TTTTAAAACA AATAGTTCAA GTGGTAATTG ACAAATTATC 54809 .......... .......... .......... .......... .......... .......... 275 TTGAATATAA AAATAAAAAA AAATAAA 54782 || | || ||| |||||| ||| ||| ...AAAAAAA AAAAAAAAAA AAAAAAA 299 hqPGS_C09HBa0278J12.1-_SGN-E551314+ (56008 55744,54805 54782) ******************************************************************************** EST sequence 66 -strand 686 n (File: SGN-E397839-) 1 CGCCGGAGAA AGAGAGTTGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 61 CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 121 GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 181 CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC 241 AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA 301 GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG 361 ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG 421 AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC 481 GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT 541 GAAATTTACT CGTGCTTTGT TGCTTTTAAA TTTTAAGCTT ATTGTTATAT CTTTCTTTTA 601 TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAT CTTCGGGCTT 661 TAGATCCTAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 57474 to 54968): Exon 1 56864 56655 ( 210 n); cDNA 1 210 ( 210 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55739 ( 458 n); cDNA 211 668 ( 458 n); score: 1.000 PPA cDNA 669 686 MATCH C09HBa0278J12.1- SGN-E397839- 0.999 668 0.974 C PGS_C09HBa0278J12.1-_SGN-E397839- (56864 56655,56196 55739) Alignment (genomic DNA sequence = upper lines): CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 56805 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGAGAA AGAGAGTTGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 60 CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 56745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 120 GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 56685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 180 CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT AATATGAATC 56625 |||||||||| |||||||||| |||||||||| CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... .......... 210 TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG CTGTTTCCGT 56565 .......... .......... .......... .......... .......... .......... 210 TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG TTAAATTCTG 56505 .......... .......... .......... .......... .......... .......... 210 TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA GGGGATCGAA 56445 .......... .......... .......... .......... .......... .......... 210 GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT GGATAAAAGG 56385 .......... .......... .......... .......... .......... .......... 210 CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT TTTGAACTTT 56325 .......... .......... .......... .......... .......... .......... 210 TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG TTCGTAGCAA 56265 .......... .......... .......... .......... .......... .......... 210 AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT TTTTGTGTGT 56205 .......... .......... .......... .......... .......... .......... 210 ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA 56145 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA 262 GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG 56085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG 322 GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT 56025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT 382 GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG 55965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG 442 CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT 55905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT 502 AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG 55845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG 562 CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT AGTATCTTTT ATTCATGCAA 55785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT AGTATCTTTT ATTCATGCAA 622 ATGAAATAAT TATAGTATTA GTGTTAATCT TCGGGCTTTA GATCCT 55739 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATGAAATAAT TATAGTATTA GTGTTAATCT TCGGGCTTTA GATCCT 668 hqPGS_C09HBa0278J12.1-_SGN-E397839- (56864 56655,56196 55739) ******************************************************************************** EST sequence 65 -strand 686 n (File: SGN-E391990-) 1 CCCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 61 CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 121 GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 181 CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC 241 AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA 301 GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG 361 ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG 421 AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC 481 GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT 541 GAAATTTACT CGTGCTTTGT TGCTTTTAAA TTTTAAGCTT ATTGTTATAT CTTTCTTTTA 601 TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAT CTTCGGGCTT 661 TAGATCCTAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 57492 to 54968): Exon 1 56862 56655 ( 208 n); cDNA 3 210 ( 208 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55739 ( 458 n); cDNA 211 668 ( 458 n); score: 1.000 PPA cDNA 669 686 MATCH C09HBa0278J12.1- SGN-E391990- 1.000 666 0.971 C PGS_C09HBa0278J12.1-_SGN-E391990- (56862 56655,56196 55739) Alignment (genomic DNA sequence = upper lines): CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG CTCCATAGCC 56803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG CTCCATAGCC 62 AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT CCGATCTCGA 56743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT CCGATCTCGA 122 TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT GCTTTCGTCT 56683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT GCTTTCGTCT 182 CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA TATGAATCTA 56623 |||||||||| |||||||||| |||||||| CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... .......... 210 AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT GTTTCCGTTG 56563 .......... .......... .......... .......... .......... .......... 210 AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT AAATTCTGTG 56503 .......... .......... .......... .......... .......... .......... 210 GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG GGATCGAAGT 56443 .......... .......... .......... .......... .......... .......... 210 TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG ATAAAAGGCG 56383 .......... .......... .......... .......... .......... .......... 210 TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT TGAACTTTTT 56323 .......... .......... .......... .......... .......... .......... 210 CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT CGTAGCAAAA 56263 .......... .......... .......... .......... .......... .......... 210 ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT TTGTGTGTAT 56203 .......... .......... .......... .......... .......... .......... 210 GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT 56143 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT 264 GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA CTTCATGGGT 56083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA CTTCATGGGT 324 GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA TTGACGCTGC 56023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA TTGACGCTGC 384 TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT CTTTGAAGCT 55963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT CTTTGAAGCT 444 GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA GAGAATTTAG 55903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA GAGAATTTAG 504 TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG CTTTGTTGCT 55843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG CTTTGTTGCT 564 TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT TCATGCAAAT 55783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT TCATGCAAAT 624 GAAATAATTA TAGTATTAGT GTTAATCTTC GGGCTTTAGA TCCT 55739 |||||||||| |||||||||| |||||||||| |||||||||| |||| GAAATAATTA TAGTATTAGT GTTAATCTTC GGGCTTTAGA TCCT 668 hqPGS_C09HBa0278J12.1-_SGN-E391990- (56862 56655,56196 55739) ******************************************************************************** EST sequence 209 +strand 540 n (File: SGN-E305337+) 1 GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC 61 TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 121 TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 181 TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 241 CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 301 TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA 361 GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC 421 TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA 481 TGAAATAATT ATAGTATTAG TGTTAATCTT CGGGCTTTAG ATCCTANNNA AAAAAAAAAA Predicted gene structure (within gDNA segment 57321 to 54988): Exon 1 56721 56655 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55739 ( 458 n); cDNA 68 525 ( 458 n); score: 1.000 Intron 2 55738 55464 ( 275 n); Pd: 0.000 (s: 1.00), Pa: 0.811 (s: 0) Exon 3 55463 55451 ( 13 n); cDNA 526 538 ( 13 n); score: 0.538 MATCH C09HBa0278J12.1- SGN-E305337+ 1.000 538 0.996 C PGS_C09HBa0278J12.1-_SGN-E305337+ (56721 56655,56196 55739,55463 55451) Alignment (genomic DNA sequence = upper lines): GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC 56662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC 60 TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT 56602 ||||||| TCAGCAG... .......... .......... .......... .......... .......... 67 GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA 56542 .......... .......... .......... .......... .......... .......... 67 AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT 56482 .......... .......... .......... .......... .......... .......... 67 AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT 56422 .......... .......... .......... .......... .......... .......... 67 AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA 56362 .......... .......... .......... .......... .......... .......... 67 TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT 56302 .......... .......... .......... .......... .......... .......... 67 ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC 56242 .......... .......... .......... .......... .......... .......... 67 TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC 56182 ||||| |||||||||| .......... .......... .......... .......... .....GCGTG GATATGCAGC 82 GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT 56122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT 142 GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA 56062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA 202 CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT 56002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT 262 GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC 55942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC 322 TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA 55882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA 382 AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT 55822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT 442 TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG 55762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG 502 TTAATCTTCG GGCTTTAGAT CCTATTTTTT TCTTCTTTTT TTTTTGAATT CTTCAATCTC 55702 |||||||||| |||||||||| ||| TTAATCTTCG GGCTTTAGAT CCT....... .......... .......... .......... 525 CAGGTTTACG TATTTATTTT TTGTTTCTTT TGGGAAAATC TCATAACATT CTTGCAACTT 55642 .......... .......... .......... .......... .......... .......... 525 TTTTTAATCA AACTAATGTT ATAATCATAT CTTAGTATTT TTAAGATTAT CATCAATATA 55582 .......... .......... .......... .......... .......... .......... 525 TTAATAAAAT AAGTGATATT CAAAAGTTAT ATCAAAAGTA TTATAAATTA TAATCTTTTA 55522 .......... .......... .......... .......... .......... .......... 525 TATATTTATA TTTTTAAAAT GTTAATCAAA TTTTTTATAA TTTTAACTCT AAAAATAGAG 55462 | .......... .......... .......... .......... .......... ........AN 527 ATCATAACAA A 55451 | || || | NNAAAAAAAA A 538 hqPGS_C09HBa0278J12.1-_SGN-E305337+ (56721 56655,56196 55739) ******************************************************************************** EST sequence 170 +strand 670 n (File: SGN-E262197+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 361 CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC 421 AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG 481 AGATTTTCGA TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT 541 AGCAGTGTGA AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT 601 TTCTTTTATT AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTAATCT 661 TCGGGGCTTT Predicted gene structure (within gDNA segment 57471 to 55090): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55746 ( 451 n); cDNA 218 669 ( 452 n); score: 0.990 MATCH C09HBa0278J12.1- SGN-E262197+ 0.993 668 0.997 C PGS_C09HBa0278J12.1-_SGN-E262197+ (56871 56655,56196 55746) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GC-AAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAAG TGGAGAGGAA TCGGTGAAGA 322 CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 56033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 382 TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 55973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 442 CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 55913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 502 GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 55853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 562 CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 55793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 622 TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATCTTC GGGCTTT 55746 |||||||||| |||||||||| |||||||||| |||||||||| ||| || TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATCTTC GGGGCTT 669 hqPGS_C09HBa0278J12.1-_SGN-E262197+ (56871 56655,56196 55746) ******************************************************************************** EST sequence 122 -strand 588 n (File: SGN-E272154-) 1 GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 61 ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA 121 GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG 181 ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT 241 TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG 301 TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT 361 ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA 421 GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT 481 GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG 541 TGTTAATCTT CGAAAAAAAA AAAAAAAAAA AAAACTCGAG ACTAGTTC Predicted gene structure (within gDNA segment 57371 to 54792): Exon 1 56761 56655 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55752 ( 445 n); cDNA 108 552 ( 445 n); score: 1.000 PPA cDNA 553 575 MATCH C09HBa0278J12.1- SGN-E272154- 1.000 552 0.939 C PGS_C09HBa0278J12.1-_SGN-E272154- (56761 56655,56196 55752) Alignment (genomic DNA sequence = upper lines): GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 56702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 60 ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA 56642 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... 107 CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG 56582 .......... .......... .......... .......... .......... .......... 107 TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC 56522 .......... .......... .......... .......... .......... .......... 107 ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC 56462 .......... .......... .......... .......... .......... .......... 107 GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT 56402 .......... .......... .......... .......... .......... .......... 107 ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC 56342 .......... .......... .......... .......... .......... .......... 107 TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT 56282 .......... .......... .......... .......... .......... .......... 107 TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT 56222 .......... .......... .......... .......... .......... .......... 107 GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 56162 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 142 CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 56102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 202 CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 56042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 262 CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 55982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 322 ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 55922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 382 ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT 55862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT 442 TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT 55802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT 502 ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAATCTTCG 55752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAATCTTCG 552 hqPGS_C09HBa0278J12.1-_SGN-E272154- (56761 56655,56196 55752) ******************************************************************************** EST sequence 4 -strand 554 n (File: SGN-E248608-) 1 TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 61 GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT 121 TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA 181 TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA 241 GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC 301 AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC 361 AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA 421 TTTACTCGTG CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG 481 TATCTTTTAT TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATCTTA AAAAAAAAAA 541 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 57350 to 54904): Exon 1 56740 56655 ( 86 n); cDNA 1 86 ( 86 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55754 ( 443 n); cDNA 87 529 ( 443 n); score: 1.000 PPA cDNA 530 554 MATCH C09HBa0278J12.1- SGN-E248608- 1.000 529 0.955 C PGS_C09HBa0278J12.1-_SGN-E248608- (56740 56655,56196 55754) Alignment (genomic DNA sequence = upper lines): TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 56681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 60 GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA TGAATCTAAA 56621 |||||||||| |||||||||| |||||| GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... .......... 86 CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT TTCCGTTGAG 56561 .......... .......... .......... .......... .......... .......... 86 TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA ATTCTGTGGT 56501 .......... .......... .......... .......... .......... .......... 86 TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG ATCGAAGTTC 56441 .......... .......... .......... .......... .......... .......... 86 TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT AAAAGGCGTT 56381 .......... .......... .......... .......... .......... .......... 86 AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG AACTTTTTCT 56321 .......... .......... .......... .......... .......... .......... 86 TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG TAGCAAAAAC 56261 .......... .......... .......... .......... .......... .......... 86 AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT GTGTGTATGT 56201 .......... .......... .......... .......... .......... .......... 86 ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 56141 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 142 CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 56081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 202 CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 56021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 262 AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 55961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 322 GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 55901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 382 AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 55841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 442 TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 55781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 502 AATAATTATA GTATTAGTGT TAATCTT 55754 |||||||||| |||||||||| ||||||| AATAATTATA GTATTAGTGT TAATCTT 529 hqPGS_C09HBa0278J12.1-_SGN-E248608- (56740 56655,56196 55754) ******************************************************************************** EST sequence 384 +strand 647 n (File: SGN-E246749+) 1 GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT CCATAGCCAA 61 ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 121 TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 181 GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT 241 TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA 301 TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA 361 GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC 421 AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC 481 AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA 541 TTTACTCGTG CTTTGTTGCT TTTAAATTTT AAGCTTATTG GTATATCTTT CTTTTATTAG 601 TATCTTTTAT TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATC Predicted gene structure (within gDNA segment 57460 to 55146): Exon 1 56860 56655 ( 206 n); cDNA 1 206 ( 206 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55756 ( 441 n); cDNA 207 647 ( 441 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E246749+ 0.998 647 1.000 C PGS_C09HBa0278J12.1-_SGN-E246749+ (56860 56655,56196 55756) Alignment (genomic DNA sequence = upper lines): GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT CCATAGCCAA 56801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT CCATAGCCAA 60 ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 56741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 120 TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 56681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 180 GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA TGAATCTAAA 56621 |||||||||| |||||||||| |||||| GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... .......... 206 CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT TTCCGTTGAG 56561 .......... .......... .......... .......... .......... .......... 206 TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA ATTCTGTGGT 56501 .......... .......... .......... .......... .......... .......... 206 TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG ATCGAAGTTC 56441 .......... .......... .......... .......... .......... .......... 206 TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT AAAAGGCGTT 56381 .......... .......... .......... .......... .......... .......... 206 AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG AACTTTTTCT 56321 .......... .......... .......... .......... .......... .......... 206 TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG TAGCAAAAAC 56261 .......... .......... .......... .......... .......... .......... 206 AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT GTGTGTATGT 56201 .......... .......... .......... .......... .......... .......... 206 ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 56141 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 262 CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 56081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 322 CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 56021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 382 AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 55961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 442 GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 55901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 502 AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 55841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 562 TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 55781 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TAAATTTTAA GCTTATTGGT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 622 AATAATTATA GTATTAGTGT TAATC 55756 |||||||||| |||||||||| ||||| AATAATTATA GTATTAGTGT TAATC 647 hqPGS_C09HBa0278J12.1-_SGN-E246749+ (56860 56655,56196 55756) ******************************************************************************** EST sequence 324 +strand 651 n (File: SGN-E245018+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAA GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGGATA TCTTTCTTTT 601 ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATGGTA TTAAAAAAAA A Predicted gene structure (within gDNA segment 57465 to 55012): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 212 650 ( 439 n); score: 0.979 MATCH C09HBa0278J12.1- SGN-E245018+ 0.986 650 0.998 C PGS_C09HBa0278J12.1-_SGN-E245018+ (56865 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAAGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| GCTTTTAAAT TTTAAGCTTA TTGGGATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 622 AATGAAATAA TTATAGTATT AGTGTTAA 55758 |||||||||| |||| ||||| | || AATGAAATAA TTATGGTATT AAAAAAAA 650 hqPGS_C09HBa0278J12.1-_SGN-E245018+ (56865 56655,56196 55758) ******************************************************************************** EST sequence 81 -strand 547 n (File: SGN-E306599-) 1 GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 61 ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA 121 GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG 181 ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT 241 TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG 301 TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT 361 ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA 421 GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT 481 GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG 541 TGTTAAA Predicted gene structure (within gDNA segment 57371 to 55148): Exon 1 56761 56655 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 108 546 ( 439 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E306599- 1.000 546 0.998 C PGS_C09HBa0278J12.1-_SGN-E306599- (56761 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 56702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGACTC CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG 60 ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA 56642 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... 107 CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG 56582 .......... .......... .......... .......... .......... .......... 107 TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC 56522 .......... .......... .......... .......... .......... .......... 107 ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC 56462 .......... .......... .......... .......... .......... .......... 107 GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT 56402 .......... .......... .......... .......... .......... .......... 107 ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC 56342 .......... .......... .......... .......... .......... .......... 107 TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT 56282 .......... .......... .......... .......... .......... .......... 107 TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT 56222 .......... .......... .......... .......... .......... .......... 107 GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 56162 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 142 CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 56102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 202 CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 56042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 262 CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 55982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 322 ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 55922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 382 ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT 55862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT 442 TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT 55802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT 502 ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAA 55758 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAA 546 hqPGS_C09HBa0278J12.1-_SGN-E306599- (56761 56655,56196 55758) ******************************************************************************** EST sequence 24 -strand 679 n (File: SGN-E263653-) 1 AAAGTAATAA TTCATATATC TTCAACTNTC ATGGTGTTAT TTCCAACCTC TCTCTAATCT 61 GCCATATCAT CATCTTCGTC ATCTATTTCT TCAATCCTCA TTTTCTTCAC TGCTTGAGCA 121 GCATCATTCC TTGGCCCATT AGGTAGCTGC GATATCATAA TAAGCAATGG CTCGTTCTTT 181 CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG 241 GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 301 GAGCAATGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGTCTTCAT GGGTGCCAGA 361 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 421 CCTGAAGACG CTGTTGAAAC CCAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 481 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCACCGAG AAAAGAGAAT TTAGTGAAGG 541 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 601 TTTTAAGCTT CTTGTTATAT CTTTCTTTTA TTAGTATCTC TTATTCATGC AAATGAAATA 661 ATTATAGTAT TAAAAAAAA Predicted gene structure (within gDNA segment 58845 to 55095): Exon 1 56745 56655 ( 91 n); cDNA 150 240 ( 91 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 241 679 ( 439 n); score: 0.970 MATCH C09HBa0278J12.1- SGN-E263653- 0.975 530 0.781 C PGS_C09HBa0278J12.1-_SGN-E263653- (56745 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 209 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 240 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 240 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 240 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 240 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 240 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 240 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 240 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 240 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 291 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| || ||||||| AGTGCCAAGG AGCAATGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGTCTTCATG 351 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 411 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| | ||||| || ||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CTGAAGACGC TGTTGAAACC CAGATCTGGA AGCAACTGAA AATCTTTGAA 471 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCACCGAGA AAAGAGAATT 531 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 591 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GCTTTTAAAT TTTAAGCTTC TTGTTATATC TTTCTTTTAT TAGTATCTCT TATTCATGCA 651 AATGAAATAA TTATAGTATT AGTGTTAA 55758 |||||||||| |||||||||| | || AATGAAATAA TTATAGTATT AAAAAAAA 679 hqPGS_C09HBa0278J12.1-_SGN-E263653- (56745 56655,56196 55758) ******************************************************************************** EST sequence 141 -strand 745 n (File: SGN-E260519-) 1 ACTTGTGAAC GTTCACTTCT TAATGATGTA AAATTGGACT AACCCTATAC CAGGGTATTT 61 AAACAAAAAG TAATAATTCA TATATCTTCA ACTTTCATGG TGTTATTTTC AACCTCTCTT 121 TAATCTGCCA TTTCATCATC TTCGTCATCT ATTTCTTCAA TCCTCATTTT CTTCACTGCT 181 TGAGCAGCAT CATTCCTTGG CCCATTAGGT AGCTGCGATA TCATAATAAG CAATGGCTCG 241 TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC GACTCCGTTT CTGCTTTTCT 301 CAGCAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT 361 GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA CTTCATGGGT 421 GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA TTGACGCTGC 481 TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT CTTTGAAGCT 541 GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA GAGAATTTAG 601 TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG CTTTGTTGCT 661 TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT TCATGCAAAT 721 GAAATAATTA TAGTATTAAA AAAAA Predicted gene structure (within gDNA segment 59505 to 55095): Exon 1 56745 56655 ( 91 n); cDNA 216 306 ( 91 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 307 745 ( 439 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E260519- 0.991 530 0.711 C PGS_C09HBa0278J12.1-_SGN-E260519- (56745 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 275 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 306 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 306 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 306 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 306 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 306 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 306 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 306 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 306 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 357 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 417 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 477 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 537 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 597 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 657 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 717 AATGAAATAA TTATAGTATT AGTGTTAA 55758 |||||||||| |||||||||| | || AATGAAATAA TTATAGTATT AAAAAAAA 745 hqPGS_C09HBa0278J12.1-_SGN-E260519- (56745 56655,56196 55758) ******************************************************************************** EST sequence 258 +strand 497 n (File: SGN-E203483+) 1 TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG 61 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 121 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 181 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 241 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 301 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 361 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 421 TAAAGCTATT GGTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT 481 ATAGTATTAA AAAAAAA Predicted gene structure (within gDNA segment 57311 to 55075): Exon 1 56711 56655 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 58 496 ( 439 n); score: 0.979 MATCH C09HBa0278J12.1- SGN-E203483+ 0.982 496 0.998 C PGS_C09HBa0278J12.1-_SGN-E203483+ (56711 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA 56652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... 57 ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG 56592 .......... .......... .......... .......... .......... .......... 57 AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA 56532 .......... .......... .......... .......... .......... .......... 57 GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC 56472 .......... .......... .......... .......... .......... .......... 57 TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA 56412 .......... .......... .......... .......... .......... .......... 57 ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG 56352 .......... .......... .......... .......... .......... .......... 57 TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG 56292 .......... .......... .......... .......... .......... .......... 57 TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG 56232 .......... .......... .......... .......... .......... .......... 57 TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA 56172 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCGTG GATATGCAGC GGCATCACAA 82 GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 56112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 142 GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 56052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 202 GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 55992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 262 TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 55932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 322 TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 55872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 382 AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC 55812 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| |||||||||| AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AAGCTATTGG TATATCTTTC 442 TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAA 55758 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAAAA AAAA 496 hqPGS_C09HBa0278J12.1-_SGN-E203483+ (56711 56655,56196 55758) ******************************************************************************** EST sequence 419 +strand 498 n (File: SGN-E201474+) 1 TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG 61 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 121 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 181 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 241 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 301 ATCTCCCGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA TTGAAGGAAC 361 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGGTGC TTATAAATTT 421 TAAGCTTATC GTTATATCTT TCTTTCATTA GTATCTTGTA TCCATGCAAA TGAAATAATC 481 ATAGTATTAA AAAAAAAA Predicted gene structure (within gDNA segment 57311 to 54525): Exon 1 56711 56655 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 58 496 ( 439 n); score: 0.968 MATCH C09HBa0278J12.1- SGN-E201474+ 0.972 496 0.996 C PGS_C09HBa0278J12.1-_SGN-E201474+ (56711 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA 56652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... 57 ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG 56592 .......... .......... .......... .......... .......... .......... 57 AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA 56532 .......... .......... .......... .......... .......... .......... 57 GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC 56472 .......... .......... .......... .......... .......... .......... 57 TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA 56412 .......... .......... .......... .......... .......... .......... 57 ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG 56352 .......... .......... .......... .......... .......... .......... 57 TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG 56292 .......... .......... .......... .......... .......... .......... 57 TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG 56232 .......... .......... .......... .......... .......... .......... 57 TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA 56172 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCGTG GATATGCAGC GGCATCACAA 82 GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 56112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 142 GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 56052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 202 GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 55992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 262 TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 55932 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCCGTTAC TCATCGGAGA 322 TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 55872 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTTTCGATCA ACGAGAAAAG AGAATTTATT GAAGGAACTG TTTTATCAGA AAAATATAGC 382 AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC 55812 |||||||||| |||||||||| |||| ||||| ||||||||| ||||||| || |||||||||| AGTGTGAAAT TTACTCGTGC TTTGGTGCTT ATAAATTTTA AGCTTATCGT TATATCTTTC 442 TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG TTAA 55758 ||| |||||| ||||| ||| |||||||||| ||||||| || ||||||| || TTTCATTAGT ATCTTGTATC CATGCAAATG AAATAATCAT AGTATTAAAA AAAA 496 hqPGS_C09HBa0278J12.1-_SGN-E201474+ (56711 56655,56196 55758) ******************************************************************************** EST sequence 14 -strand 463 n (File: SGN-E551160-) 1 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 61 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 121 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 181 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 241 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 301 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT 361 ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT 421 CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAAAAAA AAA Predicted gene structure (within gDNA segment 57009 to 55085): Exon 1 56677 56655 ( 23 n); cDNA 1 23 ( 23 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 56196 55758 ( 439 n); cDNA 24 462 ( 439 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E551160- 0.989 462 0.998 C PGS_C09HBa0278J12.1-_SGN-E551160- (56677 56655,56196 55758) Alignment (genomic DNA sequence = upper lines): TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 23 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 23 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 23 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 23 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 23 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 23 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 23 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 23 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 82 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 142 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 202 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 262 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 322 GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 55838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 382 ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 55778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 442 AATTATAGTA TTAGTGTTAA 55758 |||||||||| ||| || AATTATAGTA TTAAAAAAAA 462 hqPGS_C09HBa0278J12.1-_SGN-E551160- (56677 56655,56196 55758) ******************************************************************************** EST sequence 357 +strand 687 n (File: SGN-E245513+) 1 AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 61 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 121 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 181 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA 241 TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 301 AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 361 AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 421 CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT 481 CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA 541 TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA 601 TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTGTTAA 661 ATCTTTCGGC TTTAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 57475 to 54878): Exon 1 56875 56655 ( 221 n); cDNA 1 221 ( 221 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 222 659 ( 438 n); score: 0.998 PPA cDNA 674 687 MATCH C09HBa0278J12.1- SGN-E245513+ 0.998 659 0.959 C PGS_C09HBa0278J12.1-_SGN-E245513+ (56875 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 56816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 60 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 56756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 120 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 56696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 180 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG 56636 |||||||||| |||||||||| |||||||||| |||||||||| | TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... 221 TAATATGAAT CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC 56576 .......... .......... .......... .......... .......... .......... 221 GCTGTTTCCG TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA 56516 .......... .......... .......... .......... .......... .......... 221 GTTAAATTCT GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC 56456 .......... .......... .......... .......... .......... .......... 221 AGGGGATCGA AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC 56396 .......... .......... .......... .......... .......... .......... 221 TGGATAAAAG GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA 56336 .......... .......... .......... .......... .......... .......... 221 TTTTGAACTT TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT 56276 .......... .......... .......... .......... .......... .......... 221 GTTCGTAGCA AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT 56216 .......... .......... .......... .......... .......... .......... 221 TTTTTGTGTG TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 56156 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 262 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 56096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 322 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 56036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 382 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 55976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 442 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 55916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 502 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 55856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 562 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT 55796 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT 622 TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTA 55759 |||||||||| |||||||||| |||||||||| ||||||| TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTA 659 hqPGS_C09HBa0278J12.1-_SGN-E245513+ (56875 56655,56196 55759) ******************************************************************************** EST sequence 64 -strand 665 n (File: SGN-E374904-) 1 CCTAAGTTCG CCGAAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 61 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 121 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 301 AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 361 CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC 421 AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG 481 AGATTTTCGA TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT 541 AGCAGTGTGA AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT 601 TTCTTTTATT AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTAAAAA 661 AAAAA Predicted gene structure (within gDNA segment 57608 to 55078): Exon 1 56872 56655 ( 218 n); cDNA 1 218 ( 218 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 219 656 ( 438 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E374904- 0.998 656 0.986 C PGS_C09HBa0278J12.1-_SGN-E374904- (56872 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 56813 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAGTTCG CCGAAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 60 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 56753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 120 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 180 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 218 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 218 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 218 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 218 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 218 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 218 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 218 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 218 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 262 CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 322 CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 56033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 382 TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 55973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 442 CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 55913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 502 GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 55853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 562 CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 55793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 622 TCATGCAAAT GAAATAATTA TAGTATTAGT GTTA 55759 |||||||||| |||||||||| |||||||||| |||| TCATGCAAAT GAAATAATTA TAGTATTAGT GTTA 656 hqPGS_C09HBa0278J12.1-_SGN-E374904- (56872 56655,56196 55759) ******************************************************************************** EST sequence 244 +strand 669 n (File: SGN-E552877+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT 601 TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTAAAAAA 661 AAAAAAAAA Predicted gene structure (within gDNA segment 57471 to 55018): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 218 655 ( 438 n); score: 1.000 PPA cDNA 656 669 MATCH C09HBa0278J12.1- SGN-E552877+ 1.000 655 0.979 C PGS_C09HBa0278J12.1-_SGN-E552877+ (56871 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 55792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 622 CATGCAAATG AAATAATTAT AGTATTAGTG TTA 55759 |||||||||| |||||||||| |||||||||| ||| CATGCAAATG AAATAATTAT AGTATTAGTG TTA 655 hqPGS_C09HBa0278J12.1-_SGN-E552877+ (56871 56655,56196 55759) ******************************************************************************** EST sequence 269 +strand 665 n (File: SGN-E378492+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT 601 TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTAAAAAA 661 AAAAA Predicted gene structure (within gDNA segment 57471 to 55058): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 218 655 ( 438 n); score: 1.000 PPA cDNA 656 665 MATCH C09HBa0278J12.1- SGN-E378492+ 1.000 655 0.985 C PGS_C09HBa0278J12.1-_SGN-E378492+ (56871 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 55792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 622 CATGCAAATG AAATAATTAT AGTATTAGTG TTA 55759 |||||||||| |||||||||| |||||||||| ||| CATGCAAATG AAATAATTAT AGTATTAGTG TTA 655 hqPGS_C09HBa0278J12.1-_SGN-E378492+ (56871 56655,56196 55759) ******************************************************************************** EST sequence 386 +strand 668 n (File: SGN-E273496+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCCGN 481 GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 541 ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA TTTTAAGCTT ATTGTTATAT 601 CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAA 661 AAAAAAAA Predicted gene structure (within gDNA segment 57471 to 55058): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 218 658 ( 441 n); score: 0.983 PPA cDNA 659 668 MATCH C09HBa0278J12.1- SGN-E273496+ 0.989 655 0.981 C PGS_C09HBa0278J12.1-_SGN-E273496+ (56871 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCAT-C--GG AGATTTTCGA TCAACGAGAA 55915 |||||||||| |||||||||| |||||||||| |||| | || |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCCGNGG AGATTTTCGA TCAACGAGAA 502 AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG 55855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG 562 TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT AGTATCTTTT 55795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT AGTATCTTTT 622 ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTA 55759 |||||||||| |||||||||| |||||||||| |||||| ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTA 658 hqPGS_C09HBa0278J12.1-_SGN-E273496+ (56871 56655,56196 55759) ******************************************************************************** EST sequence 116 -strand 596 n (File: SGN-E549058-) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAAAAA AGTGGAGAGG 241 AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC 301 AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA 361 GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA 421 TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA 481 AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT 541 AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTAAAAA AAAAAA Predicted gene structure (within gDNA segment 57477 to 55068): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0) Exon 2 56196 56189 ( 8 n); cDNA 214 221 ( 8 n); score: 1.000 Intron 2 56188 56124 ( 65 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 3 56123 55759 ( 365 n); cDNA 222 586 ( 365 n); score: 1.000 PPA cDNA 587 596 MATCH C09HBa0278J12.1- SGN-E549058- 1.000 586 0.983 C PGS_C09HBa0278J12.1-_SGN-E549058- (56867 56655,56196 56189,56123 55759) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 |||||||| .......... .GCGTGGAT. .......... .......... .......... .......... 221 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 257 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 317 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 377 AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 437 TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 55848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 497 TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 55788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 557 CAAATGAAAT AATTATAGTA TTAGTGTTA 55759 |||||||||| |||||||||| ||||||||| CAAATGAAAT AATTATAGTA TTAGTGTTA 586 hqPGS_C09HBa0278J12.1-_SGN-E549058- (56867 56655,56196 56189,56123 55759) ******************************************************************************** EST sequence 345 +strand 662 n (File: SGN-E543994+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG 241 TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG 301 AGAGGAATCG GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA 361 AGGACAAGCA AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC 421 TGGAAGCAAC TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT 481 TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG 541 TGTGAAATTT ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT 601 TTATTAGTAT CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT AAAAAAAAAA 661 AA Predicted gene structure (within gDNA segment 57467 to 55048): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 214 651 ( 438 n); score: 1.000 PPA cDNA 652 662 MATCH C09HBa0278J12.1- SGN-E543994+ 1.000 651 0.983 C PGS_C09HBa0278J12.1-_SGN-E543994+ (56867 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 262 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 322 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 382 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 442 AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 502 TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 55848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 562 TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 55788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 622 CAAATGAAAT AATTATAGTA TTAGTGTTA 55759 |||||||||| |||||||||| ||||||||| CAAATGAAAT AATTATAGTA TTAGTGTTA 651 hqPGS_C09HBa0278J12.1-_SGN-E543994+ (56867 56655,56196 55759) ******************************************************************************** EST sequence 373 +strand 596 n (File: SGN-E544533+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAAAAA AGTGGAGAGG 241 AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC 301 AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA 361 GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA 421 TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA 481 AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT 541 AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTAAAAA AAAAAA Predicted gene structure (within gDNA segment 57467 to 55058): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0) Exon 2 56196 56189 ( 8 n); cDNA 214 221 ( 8 n); score: 1.000 Intron 2 56188 56124 ( 65 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 3 56123 55759 ( 365 n); cDNA 222 586 ( 365 n); score: 1.000 PPA cDNA 587 596 MATCH C09HBa0278J12.1- SGN-E544533+ 1.000 586 0.983 C PGS_C09HBa0278J12.1-_SGN-E544533+ (56867 56655,56196 56189,56123 55759) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 |||||||| .......... .GCGTGGAT. .......... .......... .......... .......... 221 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 257 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 317 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 377 AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 437 TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 55848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 497 TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 55788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 557 CAAATGAAAT AATTATAGTA TTAGTGTTA 55759 |||||||||| |||||||||| ||||||||| CAAATGAAAT AATTATAGTA TTAGTGTTA 586 hqPGS_C09HBa0278J12.1-_SGN-E544533+ (56867 56655,56196 56189,56123 55759) ******************************************************************************** EST sequence 285 +strand 595 n (File: SGN-E307686+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAAAAAA GTGGAGAGGA 241 ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA 301 AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 361 CAACTGAAAA TCTTTGAAGC TGCGCCGGTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT 421 CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA 481 ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GGTATATCTT TCTTTTATTA 541 GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTAAAAAA AAAAA Predicted gene structure (within gDNA segment 57466 to 55058): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0) Exon 2 56196 56189 ( 8 n); cDNA 213 220 ( 8 n); score: 1.000 Intron 2 56188 56124 ( 65 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 3 56123 55759 ( 365 n); cDNA 221 585 ( 365 n); score: 0.995 PPA cDNA 586 595 MATCH C09HBa0278J12.1- SGN-E307686+ 0.997 585 0.983 C PGS_C09HBa0278J12.1-_SGN-E307686+ (56866 56655,56196 56189,56123 55759) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||| .......... GCGTGGAT.. .......... .......... .......... .......... 220 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 257 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 317 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 377 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 55907 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGCCG GTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 437 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 55847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 497 TGCTTTTAAA TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC 55787 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TGCTTTTAAA TTTTAAGCTT ATTGGTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC 557 AAATGAAATA ATTATAGTAT TAGTGTTA 55759 |||||||||| |||||||||| |||||||| AAATGAAATA ATTATAGTAT TAGTGTTA 585 hqPGS_C09HBa0278J12.1-_SGN-E307686+ (56866 56655,56196 56189,56123 55759) ******************************************************************************** EST sequence 443 +strand 661 n (File: SGN-E249554+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT 601 ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTGTTAA AAAAAAAAAA 661 A Predicted gene structure (within gDNA segment 57465 to 55038): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 212 649 ( 438 n); score: 0.998 PPA cDNA 650 661 MATCH C09HBa0278J12.1- SGN-E249554+ 0.998 649 0.982 C PGS_C09HBa0278J12.1-_SGN-E249554+ (56865 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 622 AATGAAATAA TTATAGTATT AGTGTTA 55759 |||||||||| |||||||||| ||||||| AATGAAATAA TTATAGTATT AGTGTTA 649 hqPGS_C09HBa0278J12.1-_SGN-E249554+ (56865 56655,56196 55759) ******************************************************************************** EST sequence 9 -strand 652 n (File: SGN-E370155-) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT 541 ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT 601 CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT AAAAAAAAAA AA Predicted gene structure (within gDNA segment 57467 to 55058): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 204 641 ( 438 n); score: 1.000 PPA cDNA 642 652 MATCH C09HBa0278J12.1- SGN-E370155- 1.000 641 0.983 C PGS_C09HBa0278J12.1-_SGN-E370155- (56857 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 502 GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 55838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 562 ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 55778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 622 AATTATAGTA TTAGTGTTA 55759 |||||||||| ||||||||| AATTATAGTA TTAGTGTTA 641 hqPGS_C09HBa0278J12.1-_SGN-E370155- (56857 56655,56196 55759) ******************************************************************************** EST sequence 161 +strand 653 n (File: SGN-E370156+) 1 AAAGATGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT 541 ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT 601 CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 57511 to 55038): Exon 1 56856 56655 ( 202 n); cDNA 1 203 ( 203 n); score: 0.988 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 204 641 ( 438 n); score: 1.000 PPA cDNA 642 653 MATCH C09HBa0278J12.1- SGN-E370156+ 0.996 640 0.980 C PGS_C09HBa0278J12.1-_SGN-E370156+ (56856 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): AAAGA-GAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 502 GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 55838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 562 ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 55778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 622 AATTATAGTA TTAGTGTTA 55759 |||||||||| ||||||||| AATTATAGTA TTAGTGTTA 641 hqPGS_C09HBa0278J12.1-_SGN-E370156+ (56856 56655,56196 55759) ******************************************************************************** EST sequence 339 +strand 649 n (File: SGN-E246971+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT 301 GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA 361 TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG 421 AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA 481 GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC 541 TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT ATTAGTATCT 601 TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTGTTAA AAAAAAAAA Predicted gene structure (within gDNA segment 57455 to 55058): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 202 639 ( 438 n); score: 0.998 PPA cDNA 640 649 MATCH C09HBa0278J12.1- SGN-E246971+ 0.998 639 0.985 C PGS_C09HBa0278J12.1-_SGN-E246971+ (56855 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 322 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 382 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 55956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 442 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 55896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 502 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 55836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 562 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 55776 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 622 TTATAGTATT AGTGTTA 55759 |||||||||| ||||||| TTATAGTATT AGTGTTA 639 hqPGS_C09HBa0278J12.1-_SGN-E246971+ (56855 56655,56196 55759) ******************************************************************************** EST sequence 276 +strand 548 n (File: SGN-E353871+) 1 TCCGATCTCG ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC 61 TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC 121 ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA 181 AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG 241 GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA 301 CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG 361 GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA 421 TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC 481 TTTCTTTTAT TAGAATCTTT TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTAAAA 541 AAAAAAAA Predicted gene structure (within gDNA segment 57353 to 55048): Exon 1 56753 56655 ( 99 n); cDNA 1 99 ( 99 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 100 537 ( 438 n); score: 0.995 PPA cDNA 538 548 MATCH C09HBa0278J12.1- SGN-E353871+ 0.996 537 0.980 C PGS_C09HBa0278J12.1-_SGN-E353871+ (56753 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): TCCGATCTCG ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC 56694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGATCTCG ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC 60 TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA 56634 |||||||||| |||||||||| |||||||||| ||||||||| TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... 99 ATATGAATCT AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC 56574 .......... .......... .......... .......... .......... .......... 99 TGTTTCCGTT GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT 56514 .......... .......... .......... .......... .......... .......... 99 TAAATTCTGT GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG 56454 .......... .......... .......... .......... .......... .......... 99 GGGATCGAAG TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG 56394 .......... .......... .......... .......... .......... .......... 99 GATAAAAGGC GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT 56334 .......... .......... .......... .......... .......... .......... 99 TTGAACTTTT TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT 56274 .......... .......... .......... .......... .......... .......... 99 TCGTAGCAAA AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT 56214 .......... .......... .......... .......... .......... .......... 99 TTTGTGTGTA TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 56154 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 142 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 56094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 202 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 56034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 262 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 55974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 322 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 55914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 382 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT 55854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT 442 GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA 55794 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| | |||||||| GCTTTGTTGC TTTTAAATTT TAAGCTTATT GGTATATCTT TCTTTTATTA GAATCTTTTA 502 TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTA 55759 |||||||||| |||||||||| |||||||||| ||||| TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTA 537 hqPGS_C09HBa0278J12.1-_SGN-E353871+ (56753 56655,56196 55759) ******************************************************************************** EST sequence 206 +strand 539 n (File: SGN-E305770+) 1 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 61 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 121 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 181 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 241 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 301 GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT 361 TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT 421 GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATGGCTAT ATCTTTCTTT 481 TATTAGTATC TTTCATTCAT GCAAATGAAA TAATTATAGT ATTAGTGTTA AAAAAAAAA Predicted gene structure (within gDNA segment 57346 to 55068): Exon 1 56746 56655 ( 92 n); cDNA 1 92 ( 92 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 93 530 ( 438 n); score: 0.993 MATCH C09HBa0278J12.1- SGN-E305770+ 0.994 530 0.983 C PGS_C09HBa0278J12.1-_SGN-E305770+ (56746 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 60 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 92 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 92 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 92 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 92 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 92 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 92 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 92 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 92 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 142 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 202 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 262 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 322 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 55907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 382 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 55847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 442 TGCTTTTAAA TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC 55787 |||||||||| |||||||||| || | ||||| |||||||||| |||||||||| | |||||||| TGCTTTTAAA TTTTAAGCTT ATGGCTATAT CTTTCTTTTA TTAGTATCTT TCATTCATGC 502 AAATGAAATA ATTATAGTAT TAGTGTTA 55759 |||||||||| |||||||||| |||||||| AAATGAAATA ATTATAGTAT TAGTGTTA 530 hqPGS_C09HBa0278J12.1-_SGN-E305770+ (56746 56655,56196 55759) ******************************************************************************** EST sequence 133 -strand 510 n (File: SGN-E249150-) 1 CTTTCTCAAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA 61 GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 121 CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 181 CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 241 AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 301 GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 361 AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 421 TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 481 AATAATTATA GTATTAGTGT TAAAAAAAAA Predicted gene structure (within gDNA segment 57400 to 55088): Exon 1 56718 56655 ( 64 n); cDNA 1 64 ( 64 n); score: 0.984 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 65 502 ( 438 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E249150- 0.998 502 0.984 C PGS_C09HBa0278J12.1-_SGN-E249150- (56718 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA 56659 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTCAAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA 60 GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA GGAAATATTC AAATTTTGAA 56599 |||| GCAG...... .......... .......... .......... .......... .......... 64 ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT TTTCGGTGTA AATCTAAAAT 56539 .......... .......... .......... .......... .......... .......... 64 TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT TTTCACAGCA TTATTTTAGA 56479 .......... .......... .......... .......... .......... .......... 64 ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC TGTTTTTCTT AGCTGGTAAT 56419 .......... .......... .......... .......... .......... .......... 64 AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG CATACAACTT TTTTAAATCA 56359 .......... .......... .......... .......... .......... .......... 64 ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT TATCAATGTA ATAGTATATT 56299 .......... .......... .......... .......... .......... .......... 64 TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG AGGATTGTAT CGGCGGCTAA 56239 .......... .......... .......... .......... .......... .......... 64 TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC AGGCGTGGAT ATGCAGCGGC 56179 |||||||| |||||||||| .......... .......... .......... .......... ..GCGTGGAT ATGCAGCGGC 82 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 56119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 142 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 56059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 202 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 55999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 262 ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA 55939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA 322 TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA 55879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA 382 ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGTTAT 55819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGTTAT 442 ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT ATTAGTGTTA 55759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT ATTAGTGTTA 502 hqPGS_C09HBa0278J12.1-_SGN-E249150- (56718 56655,56196 55759) ******************************************************************************** EST sequence 57 -strand 497 n (File: SGN-E304199-) 1 GACTCTCTCT GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC 61 AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT 121 GATGCAAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG 181 GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC 241 TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG 301 TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT 361 CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA 421 TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGGAATAA TTATAGTATT 481 AGTGTTAAAA AAAAAAA Predicted gene structure (within gDNA segment 57312 to 55068): Exon 1 56702 56655 ( 48 n); cDNA 1 48 ( 48 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 49 487 ( 439 n); score: 0.992 PPA cDNA 488 497 MATCH C09HBa0278J12.1- SGN-E304199- 0.992 486 0.978 C PGS_C09HBa0278J12.1-_SGN-E304199- (56702 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): GACTCTCTCT GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA 56643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTCTCTCT GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... 48 ACGTTCGTAA TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT 56583 .......... .......... .......... .......... .......... .......... 48 GTGTACCGCT GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG 56523 .......... .......... .......... .......... .......... .......... 48 CATCTGAGTT AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA 56463 .......... .......... .......... .......... .......... .......... 48 CGATAACAGG GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT 56403 .......... .......... .......... .......... .......... .......... 48 TATCCCCTGG ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG 56343 .......... .......... .......... .......... .......... .......... 48 CTGCACATTT TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT 56283 .......... .......... .......... .......... .......... .......... 48 TTTTTTTGTT CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA 56223 .......... .......... .......... .......... .......... .......... 48 TGTGAATTTT TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT 56163 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT 82 TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGC-AAAAAA GTGGAGAGGA 56104 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAA GTGGAGAGGA 142 ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA 56044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA 202 AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 55984 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 262 CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT 55924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT 322 CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA 55864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA 382 ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA 55804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA 442 GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTA 55759 |||||||||| |||||||||| || ||||||| |||||||||| ||||| GTATCTTTTA TTCATGCAAA TGGAATAATT ATAGTATTAG TGTTA 487 hqPGS_C09HBa0278J12.1-_SGN-E304199- (56702 56655,56196 55759) ******************************************************************************** EST sequence 249 +strand 487 n (File: SGN-E303225+) 1 TTGTTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT 61 CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA 121 AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA 181 GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC 241 ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC 301 GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 361 ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA TTTTAAGCTT ATTGTTATAT 421 CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAA 481 AAAAAAA Predicted gene structure (within gDNA segment 57330 to 55068): Exon 1 56693 56655 ( 39 n); cDNA 2 40 ( 39 n); score: 0.974 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 56196 55759 ( 438 n); cDNA 41 478 ( 438 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E303225+ 1.000 477 0.979 C PGS_C09HBa0278J12.1-_SGN-E303225+ (56693 56655,56196 55759) Alignment (genomic DNA sequence = upper lines): TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA 56634 || ||||||| |||||||||| |||||||||| ||||||||| TGTTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... 40 ATATGAATCT AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC 56574 .......... .......... .......... .......... .......... .......... 40 TGTTTCCGTT GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT 56514 .......... .......... .......... .......... .......... .......... 40 TAAATTCTGT GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG 56454 .......... .......... .......... .......... .......... .......... 40 GGGATCGAAG TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG 56394 .......... .......... .......... .......... .......... .......... 40 GATAAAAGGC GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT 56334 .......... .......... .......... .......... .......... .......... 40 TTGAACTTTT TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT 56274 .......... .......... .......... .......... .......... .......... 40 TCGTAGCAAA AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT 56214 .......... .......... .......... .......... .......... .......... 40 TTTGTGTGTA TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 56154 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 83 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 56094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 143 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 56034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 203 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 55974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 263 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 55914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 323 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT 55854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT 383 GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA 55794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA 443 TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTA 55759 |||||||||| |||||||||| |||||||||| ||||| TTCATGCAAA TGAAATAATT ATAGTATTAG TGTTA 478 hqPGS_C09HBa0278J12.1-_SGN-E303225+ (56693 56655,56196 55759) ******************************************************************************** EST sequence 344 +strand 670 n (File: SGN-E247741+) 1 AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 61 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 121 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 181 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA 241 TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 301 AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 361 AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 421 CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT 481 CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA 541 TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA 601 TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTGTTNA 661 AAAAAAAAAA Predicted gene structure (within gDNA segment 57475 to 55030): Exon 1 56875 56655 ( 221 n); cDNA 1 221 ( 221 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55760 ( 437 n); cDNA 222 658 ( 437 n); score: 0.998 PPA cDNA 660 670 MATCH C09HBa0278J12.1- SGN-E247741+ 0.998 658 0.982 C PGS_C09HBa0278J12.1-_SGN-E247741+ (56875 56655,56196 55760) Alignment (genomic DNA sequence = upper lines): AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 56816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 60 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 56756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 120 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 56696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 180 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG 56636 |||||||||| |||||||||| |||||||||| |||||||||| | TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... 221 TAATATGAAT CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC 56576 .......... .......... .......... .......... .......... .......... 221 GCTGTTTCCG TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA 56516 .......... .......... .......... .......... .......... .......... 221 GTTAAATTCT GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC 56456 .......... .......... .......... .......... .......... .......... 221 AGGGGATCGA AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC 56396 .......... .......... .......... .......... .......... .......... 221 TGGATAAAAG GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA 56336 .......... .......... .......... .......... .......... .......... 221 TTTTGAACTT TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT 56276 .......... .......... .......... .......... .......... .......... 221 GTTCGTAGCA AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT 56216 .......... .......... .......... .......... .......... .......... 221 TTTTTGTGTG TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 56156 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 262 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 56096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 322 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 56036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 382 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 55976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 442 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 55916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 502 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 55856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 562 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT 55796 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT 622 TATTCATGCA AATGAAATAA TTATAGTATT AGTGTT 55760 |||||||||| |||||||||| |||||||||| |||||| TATTCATGCA AATGAAATAA TTATAGTATT AGTGTT 658 hqPGS_C09HBa0278J12.1-_SGN-E247741+ (56875 56655,56196 55760) ******************************************************************************** EST sequence 235 +strand 637 n (File: SGN-E212592+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT 301 GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA 361 TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG 421 AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA 481 GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC 541 TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT 601 TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTGT Predicted gene structure (within gDNA segment 57455 to 55151): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55761 ( 436 n); cDNA 202 637 ( 436 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E212592+ 1.000 637 1.000 C PGS_C09HBa0278J12.1-_SGN-E212592+ (56855 56655,56196 55761) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 322 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 382 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 55956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 442 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 55896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 502 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 55836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 562 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 55776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 622 TTATAGTATT AGTGT 55761 |||||||||| ||||| TTATAGTATT AGTGT 637 hqPGS_C09HBa0278J12.1-_SGN-E212592+ (56855 56655,56196 55761) ******************************************************************************** EST sequence 171 +strand 666 n (File: SGN-E304911+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAAGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GGTATATCTT 601 TCTTTTATTA GGATCTTTTA TTCATGCCAA TGAAATAATT ATAGGATTAG TGGTAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 57471 to 54940): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 55763 ( 434 n); cDNA 218 651 ( 434 n); score: 0.991 PPA cDNA 655 666 MATCH C09HBa0278J12.1- SGN-E304911+ 0.992 651 0.977 C PGS_C09HBa0278J12.1-_SGN-E304911+ (56871 56655,56196 55763) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| |||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAA... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 55792 |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGG TATATCTTTC TTTTATTAGG ATCTTTTATT 622 CATGCAAATG AAATAATTAT AGTATTAGT 55763 ||||| |||| |||||||||| || |||||| CATGCCAATG AAATAATTAT AGGATTAGT 651 hqPGS_C09HBa0278J12.1-_SGN-E304911+ (56871 56655,56196 55763) ******************************************************************************** EST sequence 7 -strand 736 n (File: SGN-E578325-) 1 TACACCAATA CCATCTGCAG CTACTAGGGG CCAATGTCCT TGATACCACA AATCTGCTCC 61 TCTCTTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 121 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 181 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 241 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA 301 TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 361 AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 421 AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 481 CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTGC GGTTAATCAT 541 CGGAGATTTT CGATCACCGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA 601 TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGTTATA 661 TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAGTATTAA 721 AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 58130 to 54953): Exon 1 56870 56655 ( 216 n); cDNA 66 281 ( 216 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55763 ( 434 n); cDNA 282 715 ( 434 n); score: 0.993 PPA cDNA 719 736 MATCH C09HBa0278J12.1- SGN-E578325- 0.995 650 0.883 C PGS_C09HBa0278J12.1-_SGN-E578325- (56870 56655,56196 55763) Alignment (genomic DNA sequence = upper lines): TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 56811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 125 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 56751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 185 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 245 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA 56631 |||||||||| |||||||||| |||||||||| |||||| TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... 281 TGAATCTAAA CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT 56571 .......... .......... .......... .......... .......... .......... 281 TTCCGTTGAG TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA 56511 .......... .......... .......... .......... .......... .......... 281 ATTCTGTGGT TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG 56451 .......... .......... .......... .......... .......... .......... 281 ATCGAAGTTC TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT 56391 .......... .......... .......... .......... .......... .......... 281 AAAAGGCGTT AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG 56331 .......... .......... .......... .......... .......... .......... 281 AACTTTTTCT TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG 56271 .......... .......... .......... .......... .......... .......... 281 TAGCAAAAAC AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT 56211 .......... .......... .......... .......... .......... .......... 281 GTGTGTATGT ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 56151 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 327 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 56091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 387 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 56031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 447 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 55971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 507 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 55911 |||||||||| |||||||||| | |||||| | |||||||||| ||||||||| |||||||||| TTGAAGCTGC GCCGTTGATC TGCGGTTAAT CATCGGAGAT TTTCGATCAC CGAGAAAAGA 567 GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT 55851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT 627 TTGTTGCTTT TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC 55791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGCTTT TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC 687 ATGCAAATGA AATAATTATA GTATTAGT 55763 |||||||||| |||||||||| |||||||| ATGCAAATGA AATAATTATA GTATTAGT 715 hqPGS_C09HBa0278J12.1-_SGN-E578325- (56870 56655,56196 55763) ******************************************************************************** EST sequence 399 +strand 645 n (File: SGN-E248052+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT 601 ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAGT Predicted gene structure (within gDNA segment 57465 to 55153): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55763 ( 434 n); cDNA 212 645 ( 434 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E248052+ 1.000 645 1.000 C PGS_C09HBa0278J12.1-_SGN-E248052+ (56865 56655,56196 55763) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 622 AATGAAATAA TTATAGTATT AGT 55763 |||||||||| |||||||||| ||| AATGAAATAA TTATAGTATT AGT 645 hqPGS_C09HBa0278J12.1-_SGN-E248052+ (56865 56655,56196 55763) ******************************************************************************** EST sequence 272 +strand 642 n (File: SGN-E306240+) 1 TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 61 GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 121 ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 181 GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 241 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 301 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 361 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 421 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 481 GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT 541 TTGTTGCTTT TAAATTTTAA GCTTATTGGT ATATCTTTCT TTTATTAGTA TCTTTTATTC 601 ATGCAAATGA AATAATTATA GTATTAGTGT AAAAAAAAAA AA Predicted gene structure (within gDNA segment 57448 to 55031): Exon 1 56848 56655 ( 194 n); cDNA 1 194 ( 194 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55763 ( 434 n); cDNA 195 628 ( 434 n); score: 0.998 PPA cDNA 631 642 MATCH C09HBa0278J12.1- SGN-E306240+ 0.998 628 0.978 C PGS_C09HBa0278J12.1-_SGN-E306240+ (56848 56655,56196 55763) Alignment (genomic DNA sequence = upper lines): TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 56789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 60 GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 56729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 120 ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 56669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 180 GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA GGAAATATTC 56609 |||||||||| |||| GCTTTTCTCA GCAG...... .......... .......... .......... .......... 194 AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT TTTCGGTGTA 56549 .......... .......... .......... .......... .......... .......... 194 AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT TTTCACAGCA 56489 .......... .......... .......... .......... .......... .......... 194 TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC TGTTTTTCTT 56429 .......... .......... .......... .......... .......... .......... 194 AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG CATACAACTT 56369 .......... .......... .......... .......... .......... .......... 194 TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT TATCAATGTA 56309 .......... .......... .......... .......... .......... .......... 194 ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG AGGATTGTAT 56249 .......... .......... .......... .......... .......... .......... 194 CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC AGGCGTGGAT 56189 |||||||| .......... .......... .......... .......... .......... ..GCGTGGAT 202 ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG 56129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG 262 TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA 56069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA 322 CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA 56009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA 382 TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 55949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 442 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 55889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 502 TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 55829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 562 TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 55769 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 622 ATTAGT 55763 |||||| ATTAGT 628 hqPGS_C09HBa0278J12.1-_SGN-E306240+ (56848 56655,56196 55763) ******************************************************************************** EST sequence 348 +strand 649 n (File: SGN-E247504+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT 601 TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTA Predicted gene structure (within gDNA segment 57471 to 55155): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 218 649 ( 432 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E247504+ 1.000 649 1.000 C PGS_C09HBa0278J12.1-_SGN-E247504+ (56871 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 55792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 622 CATGCAAATG AAATAATTAT AGTATTA 55765 |||||||||| |||||||||| ||||||| CATGCAAATG AAATAATTAT AGTATTA 649 hqPGS_C09HBa0278J12.1-_SGN-E247504+ (56871 56655,56196 55765) ******************************************************************************** EST sequence 351 +strand 658 n (File: SGN-E247679+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GGTATATCTT 601 TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTAA AAAAAAAA Predicted gene structure (within gDNA segment 57471 to 55065): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 218 649 ( 432 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E247679+ 0.998 649 0.986 C PGS_C09HBa0278J12.1-_SGN-E247679+ (56871 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT 55792 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGG TATATCTTTC TTTTATTAGT ATCTTTTATT 622 CATGCAAATG AAATAATTAT AGTATTA 55765 |||||||||| |||||||||| ||||||| CATGCAAATG AAATAATTAT AGTATTA 649 hqPGS_C09HBa0278J12.1-_SGN-E247679+ (56871 56655,56196 55765) ******************************************************************************** EST sequence 237 +strand 653 n (File: SGN-E271593+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 421 GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT 481 TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT 541 GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGGTAT ATCTTTCTTT 601 TATTAGAATC TTTTATTCAT GCAAATGAAA TAATTATAGT ATTAAAAAAA AAA Predicted gene structure (within gDNA segment 57466 to 55065): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 213 644 ( 432 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E271593+ 0.997 644 0.986 C PGS_C09HBa0278J12.1-_SGN-E271593+ (56866 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 442 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 55907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 502 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 55847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 562 TGCTTTTAAA TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC 55787 |||||||||| |||||||||| |||| ||||| |||||||||| |||| ||||| |||||||||| TGCTTTTAAA TTTTAAGCTT ATTGGTATAT CTTTCTTTTA TTAGAATCTT TTATTCATGC 622 AAATGAAATA ATTATAGTAT TA 55765 |||||||||| |||||||||| || AAATGAAATA ATTATAGTAT TA 644 hqPGS_C09HBa0278J12.1-_SGN-E271593+ (56866 56655,56196 55765) ******************************************************************************** EST sequence 394 +strand 654 n (File: SGN-E247426+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT 601 ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA TTAAAAAAAA AAAA Predicted gene structure (within gDNA segment 57465 to 55045): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 212 643 ( 432 n); score: 0.998 PPA cDNA 644 654 MATCH C09HBa0278J12.1- SGN-E247426+ 0.998 643 0.983 C PGS_C09HBa0278J12.1-_SGN-E247426+ (56865 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 622 AATGAAATAA TTATAGTATT A 55765 |||||||||| |||||||||| | AATGAAATAA TTATAGTATT A 643 hqPGS_C09HBa0278J12.1-_SGN-E247426+ (56865 56655,56196 55765) ******************************************************************************** EST sequence 410 +strand 647 n (File: SGN-E245714+) 1 AGAAAGAGAG TCGAAGCTAC CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 61 CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 121 CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 181 ACTCCGTTTC TGCTTTTCTC AGCAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 241 CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 301 CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 361 CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 421 ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 481 ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT 541 TTACTCGTGC TTTGTTGCTT TTAAATTTTA AACTTATTGG TATATCTTTC TTTTATTAGT 601 ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAAAA AAAAAAA Predicted gene structure (within gDNA segment 57458 to 55055): Exon 1 56858 56655 ( 204 n); cDNA 1 205 ( 205 n); score: 0.988 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 206 637 ( 432 n); score: 0.995 PPA cDNA 638 647 MATCH C09HBa0278J12.1- SGN-E245714+ 0.993 636 0.983 C PGS_C09HBa0278J12.1-_SGN-E245714+ (56858 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): AGAAAGAGAG TCGAAGCTA- CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 56800 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAGAG TCGAAGCTAC CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 60 CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 56740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 120 CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 56680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 180 ACTCCGTTTC TGCTTTTCTC AGCAGGTAAT GATCATAACG TTCGTAATAT GAATCTAAAC 56620 |||||||||| |||||||||| ||||| ACTCCGTTTC TGCTTTTCTC AGCAG..... .......... .......... .......... 205 AGGAAATATT CAAATTTTGA AATCGGTGAA CGTGAATGTG TACCGCTGTT TCCGTTGAGT 56560 .......... .......... .......... .......... .......... .......... 205 TTTTCGGTGT AAATCTAAAA TTTTCTCAGC TATATTGCAT CTGAGTTAAA TTCTGTGGTT 56500 .......... .......... .......... .......... .......... .......... 205 TTTTCACAGC ATTATTTTAG AATTATGCTA TGCATAACGA TAACAGGGGA TCGAAGTTCT 56440 .......... .......... .......... .......... .......... .......... 205 CTGTTTTTCT TAGCTGGTAA TAACCGAAAC ATCCGTTTAT CCCCTGGATA AAAGGCGTTA 56380 .......... .......... .......... .......... .......... .......... 205 GCATACAACT TTTTTAAATC AACAAGCGTG ATTGTCGCTG CACATTTTGA ACTTTTTCTT 56320 .......... .......... .......... .......... .......... .......... 205 TTATCAATGT AATAGTATAT TTTATACGTA CTTGGATTTT TTTTGTTCGT AGCAAAAACA 56260 .......... .......... .......... .......... .......... .......... 205 GAGGATTGTA TCGGCGGCTA ATTTGCTGTG ATGTGAATGT GAATTTTTTG TGTGTATGTA 56200 .......... .......... .......... .......... .......... .......... 205 CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC 56140 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC 262 AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT CATGGGTGCC 56080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT CATGGGTGCC 322 AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 56020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 382 GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 55960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 442 CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGTGA 55900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGTGA 502 AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT TGTTGCTTTT 55840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT TGTTGCTTTT 562 AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT CTTTTATTCA TGCAAATGAA 55780 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AAATTTTAAA CTTATTGGTA TATCTTTCTT TTATTAGTAT CTTTTATTCA TGCAAATGAA 622 ATAATTATAG TATTA 55765 |||||||||| ||||| ATAATTATAG TATTA 637 hqPGS_C09HBa0278J12.1-_SGN-E245714+ (56858 56655,56196 55765) ******************************************************************************** EST sequence 104 -strand 595 n (File: SGN-E543993-) 1 ACTCCTTCCG CCGCAGGGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 61 TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 121 GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT 181 TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA 241 TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA 301 GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC 361 AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC 421 AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA 481 TTTACTCGTG CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG 541 TATCTTTTAT TCATGCAAAT GAAATAATTA TAGTATTAGG TTAAAAAAAA GGAAA Predicted gene structure (within gDNA segment 57410 to 55004): Exon 1 56800 56655 ( 146 n); cDNA 1 146 ( 146 n); score: 0.993 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 147 578 ( 432 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E543993- 0.998 578 0.971 C PGS_C09HBa0278J12.1-_SGN-E543993- (56800 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 56741 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCTTCCG CCGCAGGGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC GATCTCGATA 60 TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 56681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC TTTCGTCTCC 120 GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA TGAATCTAAA 56621 |||||||||| |||||||||| |||||| GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... .......... 146 CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT TTCCGTTGAG 56561 .......... .......... .......... .......... .......... .......... 146 TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA ATTCTGTGGT 56501 .......... .......... .......... .......... .......... .......... 146 TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG ATCGAAGTTC 56441 .......... .......... .......... .......... .......... .......... 146 TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT AAAAGGCGTT 56381 .......... .......... .......... .......... .......... .......... 146 AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG AACTTTTTCT 56321 .......... .......... .......... .......... .......... .......... 146 TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG TAGCAAAAAC 56261 .......... .......... .......... .......... .......... .......... 146 AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT GTGTGTATGT 56201 .......... .......... .......... .......... .......... .......... 146 ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 56141 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC 202 CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 56081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC 262 CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 56021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG 322 AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 55961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC 382 GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 55901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG 442 AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 55841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT 502 TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 55781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTTTAA GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA 562 AATAATTATA GTATTA 55765 |||||||||| |||||| AATAATTATA GTATTA 578 hqPGS_C09HBa0278J12.1-_SGN-E543993- (56800 56655,56196 55765) ******************************************************************************** EST sequence 166 +strand 501 n (File: SGN-E304780+) 1 TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG 61 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 121 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 181 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 241 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 301 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 361 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 421 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 481 TTATAGTATT AAAAAAAAAA A Predicted gene structure (within gDNA segment 57313 to 55055): Exon 1 56713 56655 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 60 491 ( 432 n); score: 1.000 PPA cDNA 492 501 MATCH C09HBa0278J12.1- SGN-E304780+ 1.000 491 0.980 C PGS_C09HBa0278J12.1-_SGN-E304780+ (56713 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG 56654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAG. 59 TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA TATTCAAATT TTGAAATCGG 56594 .......... .......... .......... .......... .......... .......... 59 TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG GTGTAAATCT AAAATTTTCT 56534 .......... .......... .......... .......... .......... .......... 59 CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA CAGCATTATT TTAGAATTAT 56474 .......... .......... .......... .......... .......... .......... 59 GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT TTCTTAGCTG GTAATAACCG 56414 .......... .......... .......... .......... .......... .......... 59 AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC AACTTTTTTA AATCAACAAG 56354 .......... .......... .......... .......... .......... .......... 59 CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA ATGTAATAGT ATATTTTATA 56294 .......... .......... .......... .......... .......... .......... 59 CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT TGTATCGGCG GCTAATTTGC 56234 .......... .......... .......... .......... .......... .......... 59 TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG TGGATATGCA GCGGCATCAC 56174 ||| |||||||||| |||||||||| .......... .......... .......... .......GCG TGGATATGCA GCGGCATCAC 82 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 56114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 142 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 56054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 202 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 55994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 262 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 55934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 322 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 55874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 382 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT 55814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT 442 TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTA 55765 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT ATAGTATTA 491 hqPGS_C09HBa0278J12.1-_SGN-E304780+ (56713 56655,56196 55765) ******************************************************************************** EST sequence 400 +strand 499 n (File: SGN-E209179+) 1 TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG 61 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 121 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 181 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 241 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 301 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 361 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 421 TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATAATT 481 ATAGTATTAA AAAAAAAAA Predicted gene structure (within gDNA segment 57311 to 55055): Exon 1 56711 56655 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55765 ( 432 n); cDNA 58 489 ( 432 n); score: 1.000 PPA cDNA 490 499 MATCH C09HBa0278J12.1- SGN-E209179+ 1.000 489 0.980 C PGS_C09HBa0278J12.1-_SGN-E209179+ (56711 56655,56196 55765) Alignment (genomic DNA sequence = upper lines): TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA 56652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... 57 ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG 56592 .......... .......... .......... .......... .......... .......... 57 AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA 56532 .......... .......... .......... .......... .......... .......... 57 GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC 56472 .......... .......... .......... .......... .......... .......... 57 TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA 56412 .......... .......... .......... .......... .......... .......... 57 ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG 56352 .......... .......... .......... .......... .......... .......... 57 TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG 56292 .......... .......... .......... .......... .......... .......... 57 TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG 56232 .......... .......... .......... .......... .......... .......... 57 TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA 56172 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCGTG GATATGCAGC GGCATCACAA 82 GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 56112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 142 GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 56052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 202 GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 55992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 262 TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 55932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 322 TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 55872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 382 AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC 55812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC 442 TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTA 55765 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTA 489 hqPGS_C09HBa0278J12.1-_SGN-E209179+ (56711 56655,56196 55765) ******************************************************************************** EST sequence 441 +strand 631 n (File: SGN-E249540+) 1 CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 61 CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 121 TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG 181 CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA 241 AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT 301 CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG 361 ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT 421 TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG 481 AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT 541 TGTTGCTTTT AAATTTTAAG CTTATTGGTA TATCTTTCTT TTATTAGTAT CTTTTATTCA 601 TGCAAATGAA ATAATTATAG TAAAAAAAAA A Predicted gene structure (within gDNA segment 57447 to 55068): Exon 1 56847 56655 ( 193 n); cDNA 1 193 ( 193 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55768 ( 429 n); cDNA 194 622 ( 429 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E249540+ 0.998 622 0.986 C PGS_C09HBa0278J12.1-_SGN-E249540+ (56847 56655,56196 55768) Alignment (genomic DNA sequence = upper lines): CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 60 CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 120 TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG 180 CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG GAAATATTCA 56608 |||||||||| ||| CTTTTCTCAG CAG....... .......... .......... .......... .......... 193 AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT TTCGGTGTAA 56548 .......... .......... .......... .......... .......... .......... 193 ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT TTCACAGCAT 56488 .......... .......... .......... .......... .......... .......... 193 TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT GTTTTTCTTA 56428 .......... .......... .......... .......... .......... .......... 193 GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC ATACAACTTT 56368 .......... .......... .......... .......... .......... .......... 193 TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT ATCAATGTAA 56308 .......... .......... .......... .......... .......... .......... 193 TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA GGATTGTATC 56248 .......... .......... .......... .......... .......... .......... 193 GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA GGCGTGGATA 56188 ||||||||| .......... .......... .......... .......... .......... .GCGTGGATA 202 TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT 56128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT 262 GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC 56068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC 322 CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT 56008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT 382 GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC 55948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC 442 GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT 55888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT 502 ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT 55828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT 562 TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA 55768 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT AATTATAGTA 622 hqPGS_C09HBa0278J12.1-_SGN-E249540+ (56847 56655,56196 55768) ******************************************************************************** EST sequence 405 +strand 631 n (File: SGN-E248085+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT 541 ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGGTA TATCTTTCTT TTATTAGTAT 601 CTTTTATTCA TGCAAATGAA ATAATTATAG T Predicted gene structure (within gDNA segment 57457 to 55159): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55769 ( 428 n); cDNA 204 631 ( 428 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E248085+ 0.998 631 1.000 C PGS_C09HBa0278J12.1-_SGN-E248085+ (56857 56655,56196 55769) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 502 GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 55838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 562 ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 55778 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAGCT TATTGGTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 622 AATTATAGT 55769 ||||||||| AATTATAGT 631 hqPGS_C09HBa0278J12.1-_SGN-E248085+ (56857 56655,56196 55769) ******************************************************************************** EST sequence 11 -strand 547 n (File: SGN-E370690-) 1 CCGATCTCGA TATCATAATA AACAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 61 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 121 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 181 AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 241 CCGGAAGGAC AAGCAAATGA GATTGACGAT GCTGAGCTCC GGAAGATGCT GTTGAAACAC 301 AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG 361 AGATTTTCGA TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT 421 AGCAGTGTGA AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT 481 TTCTTTTATT AGTATCTTTT ATTCATGCAA ATGAAATACT TATAGTAAAA AAAATAAAAA 541 AAAAAAA Predicted gene structure (within gDNA segment 57362 to 54887): Exon 1 56752 56655 ( 98 n); cDNA 1 98 ( 98 n); score: 0.990 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55769 ( 428 n); cDNA 99 526 ( 428 n); score: 0.995 PPA cDNA 527 547 MATCH C09HBa0278J12.1- SGN-E370690- 0.994 526 0.962 C PGS_C09HBa0278J12.1-_SGN-E370690- (56752 56655,56196 55769) Alignment (genomic DNA sequence = upper lines): CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AACAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 60 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 98 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 98 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 98 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 98 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 98 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 98 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 98 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 98 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 142 CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 202 CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 56033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 262 TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 55973 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACGATGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 322 CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 55913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 382 GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 55853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG CAGTGTGAAA TTTACTCGTG 442 CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 55793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT CTTTTATTAG TATCTTTTAT 502 TCATGCAAAT GAAATAATTA TAGT 55769 |||||||||| |||||| ||| |||| TCATGCAAAT GAAATACTTA TAGT 526 hqPGS_C09HBa0278J12.1-_SGN-E370690- (56752 56655,56196 55769) ******************************************************************************** EST sequence 229 +strand 639 n (File: SGN-E303343+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGGTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG 241 TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG 301 AGAGGAATCG GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA 361 AGGACAAGCA AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC 421 TGGAAGCAAC TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT 481 TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG 541 TGTGAAATTT ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGGTA TATCTTTCTT 601 TTATTAGTAT CTTTTATTCA TGCAAATGAA ATAATTATA Predicted gene structure (within gDNA segment 57467 to 55161): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55771 ( 426 n); cDNA 214 639 ( 426 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E303343+ 0.997 639 1.000 C PGS_C09HBa0278J12.1-_SGN-E303343+ (56867 56655,56196 55771) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGGTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 262 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 322 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 382 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 442 AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 502 TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 55848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG 562 TTGCTTTTAA ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 55788 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG 622 CAAATGAAAT AATTATA 55771 |||||||||| ||||||| CAAATGAAAT AATTATA 639 hqPGS_C09HBa0278J12.1-_SGN-E303343+ (56867 56655,56196 55771) ******************************************************************************** EST sequence 352 +strand 627 n (File: SGN-E247681+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT 301 GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA 361 TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG 421 AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA 481 GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC 541 TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT ATTAGTATCT 601 TTTATTCATG CAAATGAAAT AATTATA Predicted gene structure (within gDNA segment 57455 to 55161): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55771 ( 426 n); cDNA 202 627 ( 426 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E247681+ 0.998 627 1.000 C PGS_C09HBa0278J12.1-_SGN-E247681+ (56855 56655,56196 55771) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 322 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 382 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 55956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 442 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 55896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA 502 ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 55836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT 562 TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 55776 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA 622 TTATA 55771 ||||| TTATA 627 hqPGS_C09HBa0278J12.1-_SGN-E247681+ (56855 56655,56196 55771) ******************************************************************************** EST sequence 226 +strand 631 n (File: SGN-E302584+) 1 CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 61 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 121 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 181 CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT 241 TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA 301 ATCGGGGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGA TACTATAGGC CGGAAGGACA 361 AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 421 CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT 481 CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA 541 ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GCCATATCTT TCTTTTATTA 601 GCATCTTTTA TTCATGCAAA TGAAATAATT A Predicted gene structure (within gDNA segment 57461 to 55163): Exon 1 56861 56655 ( 207 n); cDNA 1 207 ( 207 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55773 ( 424 n); cDNA 208 631 ( 424 n); score: 0.988 MATCH C09HBa0278J12.1- SGN-E302584+ 0.992 631 1.000 C PGS_C09HBa0278J12.1-_SGN-E302584+ (56861 56655,56196 55773) Alignment (genomic DNA sequence = upper lines): CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 56802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 60 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 56742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 120 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 56682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 180 CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA 56622 |||||||||| |||||||||| ||||||| CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... .......... 207 ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA 56562 .......... .......... .......... .......... .......... .......... 207 GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG 56502 .......... .......... .......... .......... .......... .......... 207 TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT 56442 .......... .......... .......... .......... .......... .......... 207 CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT 56382 .......... .......... .......... .......... .......... .......... 207 TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC 56322 .......... .......... .......... .......... .......... .......... 207 TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA 56262 .......... .......... .......... .......... .......... .......... 207 CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG 56202 .......... .......... .......... .......... .......... .......... 207 TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 56142 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 262 CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 56082 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGGGAAGAC TTCATGGGTG 322 CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 56022 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CCAGATCCAG TTACCGGATA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 382 GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 55962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 442 CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT 55902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT 502 GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT 55842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT 562 TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG 55782 |||||||||| ||||||||| ||||||||| ||||||||| |||||||||| |||||||||| TTAAATTTTA AGCTTATTGC CATATCTTTC TTTTATTAGC ATCTTTTATT CATGCAAATG 622 AAATAATTA 55773 ||||||||| AAATAATTA 631 hqPGS_C09HBa0278J12.1-_SGN-E302584+ (56861 56655,56196 55773) ******************************************************************************** EST sequence 396 +strand 641 n (File: SGN-E247928+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTG GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT TATTGGTATA TCTTTCTTTT 601 ATTAGTATCT TTTATTCATG CCAATGAAAT AAAAAAAAAA A Predicted gene structure (within gDNA segment 57465 to 54977): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55776 ( 421 n); cDNA 212 632 ( 421 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E247928+ 0.995 632 0.986 C PGS_C09HBa0278J12.1-_SGN-E247928+ (56865 56655,56196 55776) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTG GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA 55786 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCC 622 AATGAAATAA 55776 |||||||||| AATGAAATAA 632 hqPGS_C09HBa0278J12.1-_SGN-E247928+ (56865 56655,56196 55776) ******************************************************************************** EST sequence 303 +strand 627 n (File: SGN-E308515+) 1 CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 61 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 121 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 181 CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT 241 TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA 301 ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA 361 AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 421 CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT 481 CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA 541 ATTTACTCGT GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA 601 GTATCTTTTA TTCATGCAAA TGAAATA Predicted gene structure (within gDNA segment 57461 to 55167): Exon 1 56861 56655 ( 207 n); cDNA 1 207 ( 207 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55777 ( 420 n); cDNA 208 627 ( 420 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E308515+ 1.000 627 1.000 C PGS_C09HBa0278J12.1-_SGN-E308515+ (56861 56655,56196 55777) Alignment (genomic DNA sequence = upper lines): CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 56802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 60 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 56742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 120 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 56682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 180 CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA 56622 |||||||||| |||||||||| ||||||| CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... .......... 207 ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA 56562 .......... .......... .......... .......... .......... .......... 207 GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG 56502 .......... .......... .......... .......... .......... .......... 207 TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT 56442 .......... .......... .......... .......... .......... .......... 207 CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT 56382 .......... .......... .......... .......... .......... .......... 207 TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC 56322 .......... .......... .......... .......... .......... .......... 207 TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA 56262 .......... .......... .......... .......... .......... .......... 207 CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG 56202 .......... .......... .......... .......... .......... .......... 207 TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 56142 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 262 CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 56082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 322 CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 56022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 382 GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 55962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 442 CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT 55902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT 502 GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT 55842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC TTTGTTGCTT 562 TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG 55782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG 622 AAATA 55777 ||||| AAATA 627 hqPGS_C09HBa0278J12.1-_SGN-E308515+ (56861 56655,56196 55777) ******************************************************************************** EST sequence 240 +strand 619 n (File: SGN-E303877+) 1 AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG CTCCATAGCC AAACTCCTTC 61 CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT CCGATCTCGA TATCATAATA 121 AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT GCTTTCGTCT CCGACTCCGT 181 TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 241 AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 301 GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 361 GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 421 ATCTTTGAAG CTGCGCCGTT GGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 481 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 541 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT 601 TATTCATGCA AATGAAATA Predicted gene structure (within gDNA segment 57452 to 55167): Exon 1 56852 56655 ( 198 n); cDNA 1 198 ( 198 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55777 ( 420 n); cDNA 199 619 ( 421 n); score: 0.992 MATCH C09HBa0278J12.1- SGN-E303877+ 0.994 618 0.998 C PGS_C09HBa0278J12.1-_SGN-E303877+ (56852 56655,56196 55777) Alignment (genomic DNA sequence = upper lines): AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG CTCCATAGCC AAACTCCTTC 56793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG CTCCATAGCC AAACTCCTTC 60 CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT CCGATCTCGA TATCATAATA 56733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT CCGATCTCGA TATCATAATA 120 AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT GCTTTCGTCT CCGACTCCGT 56673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT GCTTTCGTCT CCGACTCCGT 180 TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA TATGAATCTA AACAGGAAAT 56613 |||||||||| |||||||| TTCTGCTTTT CTCAGCAG.. .......... .......... .......... .......... 198 ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT GTTTCCGTTG AGTTTTTCGG 56553 .......... .......... .......... .......... .......... .......... 198 TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT AAATTCTGTG GTTTTTTCAC 56493 .......... .......... .......... .......... .......... .......... 198 AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG GGATCGAAGT TCTCTGTTTT 56433 .......... .......... .......... .......... .......... .......... 198 TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG ATAAAAGGCG TTAGCATACA 56373 .......... .......... .......... .......... .......... .......... 198 ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT TGAACTTTTT CTTTTATCAA 56313 .......... .......... .......... .......... .......... .......... 198 TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT CGTAGCAAAA ACAGAGGATT 56253 .......... .......... .......... .......... .......... .......... 198 GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT TTGTGTGTAT GTACAGGCGT 56193 |||| .......... .......... .......... .......... .......... ......GCGT 202 GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC 56133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC 262 AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA CTTCATGGGT GCCAGATCCA 56073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA CTTCATGGGT GCCAGATCCA 322 GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA TTGACGCTGC TGAGCTCCGG 56013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA TTGACGCTGC TGAGCTCCGG 382 AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTT-G 55954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTTGG 442 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 55894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 502 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 55834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 562 TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATA 55777 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||| TAAGCTTATT GGTATATCTT TCTTTTATTA GTATCTTTTA TTCATGCAAA TGAAATA 619 hqPGS_C09HBa0278J12.1-_SGN-E303877+ (56852 56655,56196 55777) ******************************************************************************** EST sequence 194 +strand 624 n (File: SGN-E306482+) 1 AAGTTCGCCG GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC 61 CATAGCCAAA CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG 121 ATCTCGATAT CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT 181 TTCGTCTCCG ACTCCGTTTC TGCTTTTCTC AGCAGGCGTG GATATGCAGC GGCATCACAA 241 GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT 301 GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG 361 GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA 421 TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA 481 TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC 541 AGTGTGAAAT TTACTCGTGC TTTGTTGCTT TTAAATTTTA AGCTTATTGG TATATCTTTC 601 TTTTATTAGT ATCTTTTATT CATG Predicted gene structure (within gDNA segment 57469 to 55178): Exon 1 56869 56655 ( 215 n); cDNA 1 215 ( 215 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55788 ( 409 n); cDNA 216 624 ( 409 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E306482+ 0.998 624 1.000 C PGS_C09HBa0278J12.1-_SGN-E306482+ (56869 56655,56196 55788) Alignment (genomic DNA sequence = upper lines): AAGTTCGCCG GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC 56810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCGCCG GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC 60 CATAGCCAAA CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG 56750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGCCAAA CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG 120 ATCTCGATAT CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT 56690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGATAT CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT 180 TTCGTCTCCG ACTCCGTTTC TGCTTTTCTC AGCAGGTAAT GATCATAACG TTCGTAATAT 56630 |||||||||| |||||||||| |||||||||| ||||| TTCGTCTCCG ACTCCGTTTC TGCTTTTCTC AGCAG..... .......... .......... 215 GAATCTAAAC AGGAAATATT CAAATTTTGA AATCGGTGAA CGTGAATGTG TACCGCTGTT 56570 .......... .......... .......... .......... .......... .......... 215 TCCGTTGAGT TTTTCGGTGT AAATCTAAAA TTTTCTCAGC TATATTGCAT CTGAGTTAAA 56510 .......... .......... .......... .......... .......... .......... 215 TTCTGTGGTT TTTTCACAGC ATTATTTTAG AATTATGCTA TGCATAACGA TAACAGGGGA 56450 .......... .......... .......... .......... .......... .......... 215 TCGAAGTTCT CTGTTTTTCT TAGCTGGTAA TAACCGAAAC ATCCGTTTAT CCCCTGGATA 56390 .......... .......... .......... .......... .......... .......... 215 AAAGGCGTTA GCATACAACT TTTTTAAATC AACAAGCGTG ATTGTCGCTG CACATTTTGA 56330 .......... .......... .......... .......... .......... .......... 215 ACTTTTTCTT TTATCAATGT AATAGTATAT TTTATACGTA CTTGGATTTT TTTTGTTCGT 56270 .......... .......... .......... .......... .......... .......... 215 AGCAAAAACA GAGGATTGTA TCGGCGGCTA ATTTGCTGTG ATGTGAATGT GAATTTTTTG 56210 .......... .......... .......... .......... .......... .......... 215 TGTGTATGTA CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA 56150 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA 262 AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT 56090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT 322 CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG 56030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG 382 ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT 55970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT 442 TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG 55910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG 502 AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT 55850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT 562 TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT CTTTTATTCA 55790 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TGTTGCTTTT AAATTTTAAG CTTATTGGTA TATCTTTCTT TTATTAGTAT CTTTTATTCA 622 TG 55788 || TG 624 hqPGS_C09HBa0278J12.1-_SGN-E306482+ (56869 56655,56196 55788) ******************************************************************************** EST sequence 372 +strand 611 n (File: SGN-E246493+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCCA AAAAAGTGGA GAGGAATCGG 301 TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA 361 ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT 421 GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG 481 AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT GTGAAATTTA 541 CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGGTAT ATCTTTCTTT TATTAGTATC 601 TTTTATTCAT G Predicted gene structure (within gDNA segment 57455 to 55178): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55788 ( 409 n); cDNA 202 611 ( 410 n); score: 0.991 MATCH C09HBa0278J12.1- SGN-E246493+ 0.994 610 0.998 C PGS_C09HBa0278J12.1-_SGN-E246493+ (56855 56655,56196 55788) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATG-CAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 322 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 382 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 442 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 55897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 502 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 55837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 562 TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATG 55788 |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| TTTTAAGCTT ATTGGTATAT CTTTCTTTTA TTAGTATCTT TTATTCATG 611 hqPGS_C09HBa0278J12.1-_SGN-E246493+ (56855 56655,56196 55788) ******************************************************************************** EST sequence 360 +strand 608 n (File: SGN-E245224+) 1 GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CCCTGGGGAA GCGCCATATC CAAACTCCTT 61 CCGCCGCANC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 121 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 181 TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 241 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 301 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 361 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 421 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 481 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 541 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT 601 TATTCATG Predicted gene structure (within gDNA segment 57453 to 55178): Exon 1 56853 56655 ( 199 n); cDNA 1 199 ( 199 n); score: 0.975 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55788 ( 409 n); cDNA 200 608 ( 409 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245224+ 0.992 608 1.000 C PGS_C09HBa0278J12.1-_SGN-E245224+ (56853 56655,56196 55788) Alignment (genomic DNA sequence = upper lines): GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 56794 |||||||||| |||||||||| |||||||||| | ||| |||| || ||||| | |||||||||| GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CCCTGGGGAA GCGCCATATC CAAACTCCTT 60 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 56734 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCANC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 120 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 56674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 180 TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA 56614 |||||||||| ||||||||| TTTCTGCTTT TCTCAGCAG. .......... .......... .......... .......... 199 TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG 56554 .......... .......... .......... .......... .......... .......... 199 GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA 56494 .......... .......... .......... .......... .......... .......... 199 CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT 56434 .......... .......... .......... .......... .......... .......... 199 TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC 56374 .......... .......... .......... .......... .......... .......... 199 AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA 56314 .......... .......... .......... .......... .......... .......... 199 ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT 56254 .......... .......... .......... .......... .......... .......... 199 TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG 56194 ||| .......... .......... .......... .......... .......... .......GCG 202 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 56134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 262 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 56074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 322 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 56014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 382 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 55954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 442 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 55894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 502 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 55834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 562 TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATG 55788 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCATG 608 hqPGS_C09HBa0278J12.1-_SGN-E245224+ (56853 56655,56196 55788) ******************************************************************************** EST sequence 347 +strand 611 n (File: SGN-E247582+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT 541 ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGGTA TATCTTTCTT TTATTAGAAT 601 CTTTTATTCA T Predicted gene structure (within gDNA segment 57457 to 55053): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55789 ( 408 n); cDNA 204 611 ( 408 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E247582+ 0.997 611 1.000 C PGS_C09HBa0278J12.1-_SGN-E247582+ (56857 56655,56196 55789) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 502 GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 55838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA 562 ATTTTAAGCT TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCAT 55789 |||||||||| ||||| |||| |||||||||| ||||| |||| ||||||||| ATTTTAAGCT TATTGGTATA TCTTTCTTTT ATTAGAATCT TTTATTCAT 611 hqPGS_C09HBa0278J12.1-_SGN-E247582+ (56857 56655,56196 55789) ******************************************************************************** EST sequence 398 +strand 607 n (File: SGN-E247976+) 1 GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCGTAGC CAAACTCCTT 61 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 121 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 181 TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 241 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 301 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 361 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 421 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 481 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 541 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGTATCTTT 601 TATTCAT Predicted gene structure (within gDNA segment 57453 to 55179): Exon 1 56853 56655 ( 199 n); cDNA 1 199 ( 199 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55789 ( 408 n); cDNA 200 607 ( 408 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E247976+ 0.997 607 1.000 C PGS_C09HBa0278J12.1-_SGN-E247976+ (56853 56655,56196 55789) Alignment (genomic DNA sequence = upper lines): GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 56794 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCGTAGC CAAACTCCTT 60 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 56734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 120 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 56674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 180 TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA 56614 |||||||||| ||||||||| TTTCTGCTTT TCTCAGCAG. .......... .......... .......... .......... 199 TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG 56554 .......... .......... .......... .......... .......... .......... 199 GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA 56494 .......... .......... .......... .......... .......... .......... 199 CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT 56434 .......... .......... .......... .......... .......... .......... 199 TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC 56374 .......... .......... .......... .......... .......... .......... 199 AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA 56314 .......... .......... .......... .......... .......... .......... 199 ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT 56254 .......... .......... .......... .......... .......... .......... 199 TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG 56194 ||| .......... .......... .......... .......... .......... .......GCG 202 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 56134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 262 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 56074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 322 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 56014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 382 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 55954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 442 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 55894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 502 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 55834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 562 TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA TTCAT 55789 |||||||||| | |||||||| |||||||||| |||||||||| ||||| TAAGCTTATT GGTATATCTT TCTTTTATTA GTATCTTTTA TTCAT 607 hqPGS_C09HBa0278J12.1-_SGN-E247976+ (56853 56655,56196 55789) ******************************************************************************** EST sequence 391 +strand 598 n (File: SGN-E247163+) 1 AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG 61 CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG 121 CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GTTTCTGCTT 181 TTCTCAGCAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 241 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 301 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 361 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 421 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 481 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT 541 TGCTTTTAAA TTTTAAGCTT ATTGGTATAT CTTTCTTTTA TTAGTATCTT TTATTCAT Predicted gene structure (within gDNA segment 57444 to 55179): Exon 1 56844 56655 ( 190 n); cDNA 1 190 ( 190 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55789 ( 408 n); cDNA 191 598 ( 408 n); score: 0.998 MATCH C09HBa0278J12.1- SGN-E247163+ 0.998 598 1.000 C PGS_C09HBa0278J12.1-_SGN-E247163+ (56844 56655,56196 55789) Alignment (genomic DNA sequence = upper lines): AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG 56785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG 60 CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG 56725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG 120 CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GTTTCTGCTT 56665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GTTTCTGCTT 180 TTCTCAGCAG GTAATGATCA TAACGTTCGT AATATGAATC TAAACAGGAA ATATTCAAAT 56605 |||||||||| TTCTCAGCAG .......... .......... .......... .......... .......... 190 TTTGAAATCG GTGAACGTGA ATGTGTACCG CTGTTTCCGT TGAGTTTTTC GGTGTAAATC 56545 .......... .......... .......... .......... .......... .......... 190 TAAAATTTTC TCAGCTATAT TGCATCTGAG TTAAATTCTG TGGTTTTTTC ACAGCATTAT 56485 .......... .......... .......... .......... .......... .......... 190 TTTAGAATTA TGCTATGCAT AACGATAACA GGGGATCGAA GTTCTCTGTT TTTCTTAGCT 56425 .......... .......... .......... .......... .......... .......... 190 GGTAATAACC GAAACATCCG TTTATCCCCT GGATAAAAGG CGTTAGCATA CAACTTTTTT 56365 .......... .......... .......... .......... .......... .......... 190 AAATCAACAA GCGTGATTGT CGCTGCACAT TTTGAACTTT TTCTTTTATC AATGTAATAG 56305 .......... .......... .......... .......... .......... .......... 190 TATATTTTAT ACGTACTTGG ATTTTTTTTG TTCGTAGCAA AAACAGAGGA TTGTATCGGC 56245 .......... .......... .......... .......... .......... .......... 190 GGCTAATTTG CTGTGATGTG AATGTGAATT TTTTGTGTGT ATGTACAGGC GTGGATATGC 56185 || |||||||||| .......... .......... .......... .......... ........GC GTGGATATGC 202 AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT 56125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT 262 GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG 56065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG 322 TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT 56005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT 382 GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT 55945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT 442 TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC 55885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC 502 AGAAAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT 55825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT 562 TGTTATATCT TTCTTTTATT AGTATCTTTT ATTCAT 55789 || ||||||| |||||||||| |||||||||| |||||| TGGTATATCT TTCTTTTATT AGTATCTTTT ATTCAT 598 hqPGS_C09HBa0278J12.1-_SGN-E247163+ (56844 56655,56196 55789) ******************************************************************************** EST sequence 376 +strand 639 n (File: SGN-E246762+) 1 GAACTAGTTC TCTCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCGTGGAGA ATTTCAGTTC 61 GCGCGCTGCG GAAGCTCCAT AGCCAAACTG CTTCCGCCGC AGCGTTCTTA TTCAGAAATT 121 CTCTTGCTCC GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGGTCT TTCTCTAACT 181 CTAAGACTCT CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT 241 ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG 301 TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA 361 CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA 421 TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 481 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 541 TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGGGCTTT GTTGCTTTTA AATTTTAAGC 601 TTATTGGTAT ATCTTTCTTT TATTAGTATC TTTTATTCA Predicted gene structure (within gDNA segment 57601 to 55180): Exon 1 56871 56655 ( 217 n); cDNA 14 232 ( 219 n); score: 0.959 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55790 ( 407 n); cDNA 233 639 ( 407 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E246762+ 0.982 624 0.977 C PGS_C09HBa0278J12.1-_SGN-E246762+ (56871 56655,56196 55790) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC -TACAGAATT TCAGTTCGC- CGCTGCGGAA 56814 |||||||||| |||||||||| |||||||||| | |||||| ||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC GTGGAGAATT TCAGTTCGCG CGCTGCGGAA 73 GCTCCATAGC CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC 56754 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCATAGC CAAACTGCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC 133 TCCGATCTCG ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC 56694 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TCCGATCTCG ATATCATAAT AAGCAATGGC TCGGTCTTTC TCTAACTCTA AGACTCTCTC 193 TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA 56634 |||||||||| |||||||||| |||||||||| ||||||||| TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... 232 ATATGAATCT AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC 56574 .......... .......... .......... .......... .......... .......... 232 TGTTTCCGTT GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT 56514 .......... .......... .......... .......... .......... .......... 232 TAAATTCTGT GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG 56454 .......... .......... .......... .......... .......... .......... 232 GGGATCGAAG TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG 56394 .......... .......... .......... .......... .......... .......... 232 GATAAAAGGC GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT 56334 .......... .......... .......... .......... .......... .......... 232 TTGAACTTTT TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT 56274 .......... .......... .......... .......... .......... .......... 232 TCGTAGCAAA AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT 56214 .......... .......... .......... .......... .......... .......... 232 TTTGTGTGTA TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 56154 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 275 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 56094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 335 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 56034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 395 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 55974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 455 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 55914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 515 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT 55854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGG 575 GCTTTGTTGC TTTTAAATTT TAAGCTTATT GTTATATCTT TCTTTTATTA GTATCTTTTA 55794 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| GCTTTGTTGC TTTTAAATTT TAAGCTTATT GGTATATCTT TCTTTTATTA GTATCTTTTA 635 TTCA 55790 |||| TTCA 639 hqPGS_C09HBa0278J12.1-_SGN-E246762+ (56871 56655,56196 55790) ******************************************************************************** EST sequence 202 +strand 615 n (File: SGN-E211265+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GGACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTAAGCTT ATTGGTATAT CTTTCTTTTA 601 TTAGNATCTT TTATT Predicted gene structure (within gDNA segment 57465 to 55083): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55792 ( 405 n); cDNA 212 615 ( 404 n); score: 0.990 MATCH C09HBa0278J12.1- SGN-E211265+ 0.994 616 1.002 C PGS_C09HBa0278J12.1-_SGN-E211265+ (56865 56655,56196 55792) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 55846 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAGGG ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT 562 GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT TAGTATCTTT TATT 55792 ||||||||| |||||||||| ||| |||||| |||||||||| ||| |||||| |||| GCTTTTAAA- TTTAAGCTTA TTGGTATATC TTTCTTTTAT TAGNATCTTT TATT 615 hqPGS_C09HBa0278J12.1-_SGN-E211265+ (56865 56655,56196 55792) ******************************************************************************** EST sequence 271 +strand 612 n (File: SGN-E391991+) 1 CGCCTGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 61 CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 121 GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 181 CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC 241 AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA 301 GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG 361 ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG 421 AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC 481 GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAATA TAGCAGTGTG 541 AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTTATAT CTTTCTTTTA 601 TTAGAATCTT TT Predicted gene structure (within gDNA segment 57509 to 55113): Exon 1 56864 56655 ( 210 n); cDNA 1 210 ( 210 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55795 ( 402 n); cDNA 211 612 ( 402 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E391991+ 0.991 612 1.000 C PGS_C09HBa0278J12.1-_SGN-E391991+ (56864 56655,56196 55795) Alignment (genomic DNA sequence = upper lines): CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 56805 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCTGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA AGCTCCATAG 60 CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 56745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA CTCCGATCTC 120 GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 56685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT CTGCTTTCGT 180 CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT AATATGAATC 56625 |||||||||| |||||||||| |||||||||| CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... .......... 210 TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG CTGTTTCCGT 56565 .......... .......... .......... .......... .......... .......... 210 TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG TTAAATTCTG 56505 .......... .......... .......... .......... .......... .......... 210 TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA GGGGATCGAA 56445 .......... .......... .......... .......... .......... .......... 210 GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT GGATAAAAGG 56385 .......... .......... .......... .......... .......... .......... 210 CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT TTTGAACTTT 56325 .......... .......... .......... .......... .......... .......... 210 TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG TTCGTAGCAA 56265 .......... .......... .......... .......... .......... .......... 210 AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT TTTTGTGTGT 56205 .......... .......... .......... .......... .......... .......... 210 ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA 56145 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA 262 GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG 56085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA GACTTCATGG 322 GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT 56025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA GATTGACGCT 382 GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG 55965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA ATCTTTGAAG 442 CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT 55905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA AAGAGAATTT 502 AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG 55845 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| AGTGAAGGAA CTGTTTTATC AG-AAAATAT AGCAGTGTGA AATTTACTCG TGCTTTGTTG 561 CTTTTAAATT TTAAGCTTAT T-GTTATATC TTTCTTTTAT TAGTATCTTT T 55795 |||||||||| |||||||||| | |||||||| |||||||||| ||| |||||| | CTTTTAAATT TTAAGCTTAT TGGTTATATC TTTCTTTTAT TAGAATCTTT T 612 hqPGS_C09HBa0278J12.1-_SGN-E391991+ (56864 56655,56196 55795) ******************************************************************************** EST sequence 425 +strand 472 n (File: SGN-E245977+) 1 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 61 TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 121 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 181 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 241 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 301 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 361 AAAGAGAANT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC 421 GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGGTATATC TTTCTTTTAT TA Predicted gene structure (within gDNA segment 57333 to 55194): Exon 1 56733 56655 ( 79 n); cDNA 1 79 ( 79 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55804 ( 393 n); cDNA 80 472 ( 393 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E245977+ 0.996 472 1.000 C PGS_C09HBa0278J12.1-_SGN-E245977+ (56733 56655,56196 55804) Alignment (genomic DNA sequence = upper lines): AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 56674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 60 TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA 56614 |||||||||| ||||||||| TTTCTGCTTT TCTCAGCAG. .......... .......... .......... .......... 79 TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG 56554 .......... .......... .......... .......... .......... .......... 79 GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA 56494 .......... .......... .......... .......... .......... .......... 79 CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT 56434 .......... .......... .......... .......... .......... .......... 79 TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC 56374 .......... .......... .......... .......... .......... .......... 79 AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA 56314 .......... .......... .......... .......... .......... .......... 79 ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT 56254 .......... .......... .......... .......... .......... .......... 79 TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG 56194 ||| .......... .......... .......... .......... .......... .......GCG 82 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 56134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 142 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 56074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 202 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 56014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 262 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 55954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 322 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 55894 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAANTTA GTGAAGGAAC 382 TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 55834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TTTTAAATTT 442 TAAGCTTATT GTTATATCTT TCTTTTATTA 55804 |||||||||| | |||||||| |||||||||| TAAGCTTATT GGTATATCTT TCTTTTATTA 472 hqPGS_C09HBa0278J12.1-_SGN-E245977+ (56733 56655,56196 55804) ******************************************************************************** EST sequence 408 +strand 604 n (File: SGN-E245701+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT 181 TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG 241 GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG 301 GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG 361 AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT 421 CTGGAAGCAA CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT 481 TTTCGATCAA CGAGAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA 541 GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA GCTTATTGGT ATATCTTTCT 601 TTTA Predicted gene structure (within gDNA segment 57471 to 55053): Exon 1 56871 56655 ( 217 n); cDNA 1 214 ( 214 n); score: 0.986 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55807 ( 390 n); cDNA 215 604 ( 390 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E245701+ 0.993 607 1.005 C PGS_C09HBa0278J12.1-_SGN-E245701+ (56871 56655,56196 55807) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| ||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATC---ATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 177 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 214 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 214 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 214 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 214 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 214 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 214 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 214 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 214 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 259 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 319 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 379 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 439 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 499 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 559 TTTGTTGCTT TTAAATTTTA AGCTTATTGT TATATCTTTC TTTTA 55807 |||||||||| |||||||||| ||||||||| |||||||||| ||||| TTTGTTGCTT TTAAATTTTA AGCTTATTGG TATATCTTTC TTTTA 604 hqPGS_C09HBa0278J12.1-_SGN-E245701+ (56871 56655,56196 55807) ******************************************************************************** EST sequence 273 +strand 590 n (File: SGN-E270743+) 1 AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGGCGCTGCG GAAGCTCCAT AGCCAAACTC 61 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 121 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 181 CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG 241 GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG 301 TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA 361 ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT 421 GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG 481 AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAACAGT GTGAAATTTA 541 CTCGTGCTTT GTTGCTTTTA AATTTTAAGC TTATTGGTAT ATCTTTCTTT Predicted gene structure (within gDNA segment 57456 to 55073): Exon 1 56856 56655 ( 202 n); cDNA 1 202 ( 202 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55809 ( 388 n); cDNA 203 590 ( 388 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E270743+ 0.995 590 1.000 C PGS_C09HBa0278J12.1-_SGN-E270743+ (56856 56655,56196 55809) Alignment (genomic DNA sequence = upper lines): AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 56797 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGGCGCTGCG GAAGCTCCAT AGCCAAACTC 60 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 56737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 120 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 56677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 180 CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA TCTAAACAGG 56617 |||||||||| |||||||||| || CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... .......... 202 AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC GTTGAGTTTT 56557 .......... .......... .......... .......... .......... .......... 202 TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC TGTGGTTTTT 56497 .......... .......... .......... .......... .......... .......... 202 TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG AAGTTCTCTG 56437 .......... .......... .......... .......... .......... .......... 202 TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA GGCGTTAGCA 56377 .......... .......... .......... .......... .......... .......... 202 TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT TTTTCTTTTA 56317 .......... .......... .......... .......... .......... .......... 202 TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC AAAAACAGAG 56257 .......... .......... .......... .......... .......... .......... 202 GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT GTATGTACAG 56197 .......... .......... .......... .......... .......... .......... 202 GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 56137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 262 GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 322 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 382 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 442 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 55897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 502 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 55837 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AACTGTTTTA TCAGAAAAAT ATAACAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 562 TTTTAAGCTT ATTGTTATAT CTTTCTTT 55809 |||||||||| |||| ||||| |||||||| TTTTAAGCTT ATTGGTATAT CTTTCTTT 590 hqPGS_C09HBa0278J12.1-_SGN-E270743+ (56856 56655,56196 55809) ******************************************************************************** EST sequence 448 +strand 600 n (File: SGN-E281688+) 1 GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 61 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 121 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 181 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA 241 GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG 301 GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 361 CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA 421 AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG 481 ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG 541 AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 57463 to 55088): Exon 1 56863 56655 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55821 ( 376 n); cDNA 210 585 ( 376 n); score: 1.000 PPA cDNA 586 600 MATCH C09HBa0278J12.1- SGN-E281688+ 1.000 585 0.975 C PGS_C09HBa0278J12.1-_SGN-E281688+ (56863 56655,56196 55821) Alignment (genomic DNA sequence = upper lines): GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 56804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 60 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 56744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 120 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 56684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 180 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT 56624 |||||||||| |||||||||| ||||||||| TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... .......... 209 AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT 56564 .......... .......... .......... .......... .......... .......... 209 GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT 56504 .......... .......... .......... .......... .......... .......... 209 GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG 56444 .......... .......... .......... .......... .......... .......... 209 TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC 56384 .......... .......... .......... .......... .......... .......... 209 GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT 56324 .......... .......... .......... .......... .......... .......... 209 TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA 56264 .......... .......... .......... .......... .......... .......... 209 AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA 56204 .......... .......... .......... .......... .......... .......... 209 TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 56144 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 262 TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 56084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 322 TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 56024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 382 CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 55964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 442 TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA 55904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA 502 GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC 55844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC TGTTTTATCA GAAAAATATA GCAGTGTGAA ATTTACTCGT GCTTTGTTGC 562 TTTTAAATTT TAAGCTTATT GTT 55821 |||||||||| |||||||||| ||| TTTTAAATTT TAAGCTTATT GTT 585 hqPGS_C09HBa0278J12.1-_SGN-E281688+ (56863 56655,56196 55821) ******************************************************************************** EST sequence 270 +strand 572 n (File: SGN-E374905+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATATA 541 GCAGTGTGAA ATTTACTCGT GCTTTGTTGC TT Predicted gene structure (within gDNA segment 57471 to 55232): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55842 ( 355 n); cDNA 218 572 ( 355 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E374905+ 1.000 572 1.000 C PGS_C09HBa0278J12.1-_SGN-E374905+ (56871 56655,56196 55842) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 55852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC AGTGTGAAAT TTACTCGTGC 562 TTTGTTGCTT 55842 |||||||||| TTTGTTGCTT 572 hqPGS_C09HBa0278J12.1-_SGN-E374905+ (56871 56655,56196 55842) ******************************************************************************** EST sequence 338 +strand 566 n (File: SGN-E276413+) 1 ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 61 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 121 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 181 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT 241 CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA 301 AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA 361 GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC 421 ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC 481 GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 541 ATAGCAGTGT GAAATTTACT CGTGCT Predicted gene structure (within gDNA segment 57474 to 55241): Exon 1 56874 56655 ( 220 n); cDNA 1 220 ( 220 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55851 ( 346 n); cDNA 221 566 ( 346 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E276413+ 1.000 566 1.000 C PGS_C09HBa0278J12.1-_SGN-E276413+ (56874 56655,56196 55851) Alignment (genomic DNA sequence = upper lines): ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 56815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 60 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 56755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 120 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 56695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 180 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT 56635 |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... 220 AATATGAATC TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG 56575 .......... .......... .......... .......... .......... .......... 220 CTGTTTCCGT TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG 56515 .......... .......... .......... .......... .......... .......... 220 TTAAATTCTG TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA 56455 .......... .......... .......... .......... .......... .......... 220 GGGGATCGAA GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT 56395 .......... .......... .......... .......... .......... .......... 220 GGATAAAAGG CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT 56335 .......... .......... .......... .......... .......... .......... 220 TTTGAACTTT TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG 56275 .......... .......... .......... .......... .......... .......... 220 TTCGTAGCAA AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT 56215 .......... .......... .......... .......... .......... .......... 220 TTTTGTGTGT ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 56155 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 262 AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 56095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 322 GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 56035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 382 GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 55975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 442 ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA 55915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA 502 AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG 55855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA AATTTACTCG 562 TGCT 55851 |||| TGCT 566 hqPGS_C09HBa0278J12.1-_SGN-E276413+ (56874 56655,56196 55851) ******************************************************************************** EST sequence 335 +strand 558 n (File: SGN-E308396+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 421 GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT 481 TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT 541 GTGAAATTTA CTCGTGCT Predicted gene structure (within gDNA segment 57466 to 55241): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55851 ( 346 n); cDNA 213 558 ( 346 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E308396+ 1.000 558 1.000 C PGS_C09HBa0278J12.1-_SGN-E308396+ (56866 56655,56196 55851) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 442 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 55907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 502 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCT 55851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCT 558 hqPGS_C09HBa0278J12.1-_SGN-E308396+ (56866 56655,56196 55851) ******************************************************************************** EST sequence 411 +strand 557 n (File: SGN-E245819+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGCAGTG 541 TGAAATTTAC TCGTGCT Predicted gene structure (within gDNA segment 57465 to 55241): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55851 ( 346 n); cDNA 212 557 ( 346 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245819+ 1.000 557 1.000 C PGS_C09HBa0278J12.1-_SGN-E245819+ (56865 56655,56196 55851) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCT 55851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCT 557 hqPGS_C09HBa0278J12.1-_SGN-E245819+ (56865 56655,56196 55851) ******************************************************************************** EST sequence 186 +strand 579 n (File: SGN-E296389+) 1 TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 61 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 121 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 181 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC 241 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 301 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 361 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 421 ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA 481 TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA 541 ATATAGCAGT GTGAAATTTA CTCGTGAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 57476 to 55113): Exon 1 56876 56655 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55854 ( 343 n); cDNA 223 565 ( 343 n); score: 1.000 PPA cDNA 567 579 MATCH C09HBa0278J12.1- SGN-E296389+ 1.000 565 0.976 C PGS_C09HBa0278J12.1-_SGN-E296389+ (56876 56655,56196 55854) Alignment (genomic DNA sequence = upper lines): TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 56817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 60 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 56757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 120 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 56697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 180 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC 56637 |||||||||| |||||||||| |||||||||| |||||||||| || CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... 222 GTAATATGAA TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC 56577 .......... .......... .......... .......... .......... .......... 222 CGCTGTTTCC GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG 56517 .......... .......... .......... .......... .......... .......... 222 AGTTAAATTC TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA 56457 .......... .......... .......... .......... .......... .......... 222 CAGGGGATCG AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC 56397 .......... .......... .......... .......... .......... .......... 222 CTGGATAAAA GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC 56337 .......... .......... .......... .......... .......... .......... 222 ATTTTGAACT TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT 56277 .......... .......... .......... .......... .......... .......... 222 TGTTCGTAGC AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA 56217 .......... .......... .......... .......... .......... .......... 222 TTTTTTGTGT GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 56157 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 262 GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 56097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 322 AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 382 GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 55977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 442 AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG 55917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG 502 AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT 55857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT 562 CGT 55854 ||| CGT 565 hqPGS_C09HBa0278J12.1-_SGN-E296389+ (56876 56655,56196 55854) ******************************************************************************** EST sequence 187 +strand 579 n (File: SGN-E296530+) 1 TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 61 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 121 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 181 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC 241 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 301 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 361 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 421 ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA 481 TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA 541 ATATAGCAGT GTGAAATTTA CTCGTGAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 57476 to 55113): Exon 1 56876 56655 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55854 ( 343 n); cDNA 223 565 ( 343 n); score: 1.000 PPA cDNA 567 579 MATCH C09HBa0278J12.1- SGN-E296530+ 1.000 565 0.976 C PGS_C09HBa0278J12.1-_SGN-E296530+ (56876 56655,56196 55854) Alignment (genomic DNA sequence = upper lines): TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 56817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 60 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 56757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 120 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 56697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 180 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC 56637 |||||||||| |||||||||| |||||||||| |||||||||| || CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... 222 GTAATATGAA TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC 56577 .......... .......... .......... .......... .......... .......... 222 CGCTGTTTCC GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG 56517 .......... .......... .......... .......... .......... .......... 222 AGTTAAATTC TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA 56457 .......... .......... .......... .......... .......... .......... 222 CAGGGGATCG AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC 56397 .......... .......... .......... .......... .......... .......... 222 CTGGATAAAA GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC 56337 .......... .......... .......... .......... .......... .......... 222 ATTTTGAACT TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT 56277 .......... .......... .......... .......... .......... .......... 222 TGTTCGTAGC AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA 56217 .......... .......... .......... .......... .......... .......... 222 TTTTTTGTGT GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 56157 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 262 GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 56097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 322 AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 382 GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 55977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 442 AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG 55917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG 502 AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT 55857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT 562 CGT 55854 ||| CGT 565 hqPGS_C09HBa0278J12.1-_SGN-E296530+ (56876 56655,56196 55854) ******************************************************************************** EST sequence 242 +strand 572 n (File: SGN-E303800+) 1 TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 61 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 121 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 181 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA 241 AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG 301 TGGAGAGGAA TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC 361 GGAAGGACAA GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG 421 ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG 481 ATTTTCGATC AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG 541 CAGTGTGAAA TTTACTCGTG AAAAAAAAAA AA Predicted gene structure (within gDNA segment 57470 to 55123): Exon 1 56870 56655 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55854 ( 343 n); cDNA 217 559 ( 343 n); score: 1.000 PPA cDNA 561 572 MATCH C09HBa0278J12.1- SGN-E303800+ 1.000 559 0.977 C PGS_C09HBa0278J12.1-_SGN-E303800+ (56870 56655,56196 55854) Alignment (genomic DNA sequence = upper lines): TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 56811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 60 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 56751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 120 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 180 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA 56631 |||||||||| |||||||||| |||||||||| |||||| TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... 216 TGAATCTAAA CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT 56571 .......... .......... .......... .......... .......... .......... 216 TTCCGTTGAG TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA 56511 .......... .......... .......... .......... .......... .......... 216 ATTCTGTGGT TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG 56451 .......... .......... .......... .......... .......... .......... 216 ATCGAAGTTC TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT 56391 .......... .......... .......... .......... .......... .......... 216 AAAAGGCGTT AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG 56331 .......... .......... .......... .......... .......... .......... 216 AACTTTTTCT TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG 56271 .......... .......... .......... .......... .......... .......... 216 TAGCAAAAAC AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT 56211 .......... .......... .......... .......... .......... .......... 216 GTGTGTATGT ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 56151 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 262 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 56091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 322 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 56031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 382 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 55971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 442 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 55911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 502 GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGT 55854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGT 559 hqPGS_C09HBa0278J12.1-_SGN-E303800+ (56870 56655,56196 55854) ******************************************************************************** EST sequence 424 +strand 553 n (File: SGN-E311604+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 421 GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT 481 TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGCAGT 541 GTGAAATTTA CTC Predicted gene structure (within gDNA segment 57466 to 55246): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55856 ( 341 n); cDNA 213 553 ( 341 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E311604+ 1.000 553 1.000 C PGS_C09HBa0278J12.1-_SGN-E311604+ (56866 56655,56196 55856) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 442 AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 55907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGCCG TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT 502 TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT C 55856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTAGTGAAGG AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT C 553 hqPGS_C09HBa0278J12.1-_SGN-E311604+ (56866 56655,56196 55856) ******************************************************************************** EST sequence 268 +strand 539 n (File: SGN-E200369+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT 301 GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA 361 TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG 421 AAAATCTTTG AAGCTGCGCC CGTGAATCTC GGTTACTCAT CGGAGATTTT CGATCAACGA 481 GAAAAGAGAA TTTAGTGAAA GAACTGTTTT ATCAGAAAAA TATAGCAGTG TGAAAATTA Predicted gene structure (within gDNA segment 57455 to 55213): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55859 ( 338 n); cDNA 202 539 ( 338 n); score: 0.978 MATCH C09HBa0278J12.1- SGN-E200369+ 0.986 539 1.000 C PGS_C09HBa0278J12.1-_SGN-E200369+ (56855 56655,56196 55859) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 322 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 382 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCG-CCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCCG 442 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 55897 | |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGAATCT-CG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAAG 501 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTA 55859 |||||||||| |||||||||| |||||||||| |||| ||| AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAAATTA 539 hqPGS_C09HBa0278J12.1-_SGN-E200369+ (56855 56655,56196 55859) ******************************************************************************** EST sequence 205 +strand 543 n (File: SGN-E305844+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC TGGTTTATCA GAAAAATATA 541 GCA Predicted gene structure (within gDNA segment 57471 to 55261): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55871 ( 326 n); cDNA 218 543 ( 326 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E305844+ 0.998 543 1.000 C PGS_C09HBa0278J12.1-_SGN-E305844+ (56871 56655,56196 55871) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT GAAGGAACTG TTTTATCAGA AAAATATAGC A 55871 |||||||||| |||||||||| ||||||||| |||||||||| | AGAATTTAGT GAAGGAACTG GTTTATCAGA AAAATATAGC A 543 hqPGS_C09HBa0278J12.1-_SGN-E305844+ (56871 56655,56196 55871) ******************************************************************************** EST sequence 449 +strand 547 n (File: SGN-E294074+) 1 TGACCCTAAG TTCGCCGGAG AAAGAGAGTC TTAGCTACAG AATTTCAGTT CGCCGCTGCG 61 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 121 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 181 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC 241 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 301 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 361 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 421 ACACAGATCT GGAAGCAACT GACAATCTTT GAAGCTGCGC CGCTGATCTC CGGTTACTCA 481 TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT TATCAGAAAA 541 ATATAGC Predicted gene structure (within gDNA segment 57494 to 55262): Exon 1 56874 56655 ( 220 n); cDNA 3 222 ( 220 n); score: 0.991 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55872 ( 325 n); cDNA 223 547 ( 325 n); score: 0.994 MATCH C09HBa0278J12.1- SGN-E294074+ 0.993 545 0.996 C PGS_C09HBa0278J12.1-_SGN-E294074+ (56874 56655,56196 55872) Alignment (genomic DNA sequence = upper lines): ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 56815 |||||||||| |||||||||| |||||||| |||||||||| |||||||||| |||||||||| ACCCTAAGTT CGCCGGAGAA AGAGAGTCTT AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 62 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 56755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 122 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 56695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 182 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT 56635 |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... 222 AATATGAATC TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG 56575 .......... .......... .......... .......... .......... .......... 222 CTGTTTCCGT TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG 56515 .......... .......... .......... .......... .......... .......... 222 TTAAATTCTG TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA 56455 .......... .......... .......... .......... .......... .......... 222 GGGGATCGAA GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT 56395 .......... .......... .......... .......... .......... .......... 222 GGATAAAAGG CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT 56335 .......... .......... .......... .......... .......... .......... 222 TTTGAACTTT TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG 56275 .......... .......... .......... .......... .......... .......... 222 TTCGTAGCAA AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT 56215 .......... .......... .......... .......... .......... .......... 222 TTTTGTGTGT ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 56155 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 264 AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 56095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 324 GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 56035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 384 GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 55975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGACA 444 ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA 55915 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTGAAG CTGCGCCGCT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA 504 AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGC 55872 |||||||||| |||||||||| |||||||||| |||||||||| ||| AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGC 547 hqPGS_C09HBa0278J12.1-_SGN-E294074+ (56874 56655,56196 55872) ******************************************************************************** EST sequence 260 +strand 539 n (File: SGN-E304209+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG 241 TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAAGTG 301 GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG 361 AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT 421 CTGGAAGCAA CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT 481 TTTCGATCAA CGAGAAAAGA GAAATTAGTG AAGGGACTGT TTTATCAGAA AAATATAGC Predicted gene structure (within gDNA segment 57467 to 55262): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55872 ( 325 n); cDNA 214 539 ( 326 n); score: 0.986 MATCH C09HBa0278J12.1- SGN-E304209+ 0.992 538 0.998 C PGS_C09HBa0278J12.1-_SGN-E304209+ (56867 56655,56196 55872) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 262 GGAGTGCCAA GGAGCAACGT GATGATGC-A AAAAAGTGGA GAGGAATCGG TGAAGACTTC 56089 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAAGTGGA GAGGAATCGG TGAAGACTTC 322 ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 56029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 382 CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT 55969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT 442 GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA 55909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA 502 ATTTAGTGAA GGAACTGTTT TATCAGAAAA ATATAGC 55872 | |||||||| || ||||||| |||||||||| ||||||| AATTAGTGAA GGGACTGTTT TATCAGAAAA ATATAGC 539 hqPGS_C09HBa0278J12.1-_SGN-E304209+ (56867 56655,56196 55872) ******************************************************************************** EST sequence 388 +strand 536 n (File: SGN-E247176+) 1 TCGCCGGATA AAGAGAGTCG AAGCTACAGA AGGGCAGTTG GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAGC Predicted gene structure (within gDNA segment 57546 to 55262): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.976 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55872 ( 325 n); cDNA 212 536 ( 325 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E247176+ 0.991 536 1.000 C PGS_C09HBa0278J12.1-_SGN-E247176+ (56865 56655,56196 55872) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||| | |||||||||| |||||||||| | ||||| |||||||||| |||||||||| TCGCCGGATA AAGAGAGTCG AAGCTACAGA AGGGCAGTTG GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGC 55872 |||||||||| |||||||||| |||||||||| |||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGC 536 hqPGS_C09HBa0278J12.1-_SGN-E247176+ (56865 56655,56196 55872) ******************************************************************************** EST sequence 378 +strand 535 n (File: SGN-E246773+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TATAG Predicted gene structure (within gDNA segment 57465 to 55263): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55873 ( 324 n); cDNA 212 535 ( 324 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E246773+ 1.000 535 1.000 C PGS_C09HBa0278J12.1-_SGN-E246773+ (56865 56655,56196 55873) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAG 55873 |||||||||| |||||||||| |||||||||| ||| TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAG 535 hqPGS_C09HBa0278J12.1-_SGN-E246773+ (56865 56655,56196 55873) ******************************************************************************** EST sequence 414 +strand 527 n (File: SGN-E248954+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAG Predicted gene structure (within gDNA segment 57457 to 55263): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55873 ( 324 n); cDNA 204 527 ( 324 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E248954+ 1.000 527 1.000 C PGS_C09HBa0278J12.1-_SGN-E248954+ (56857 56655,56196 55873) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 55898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG 502 GAACTGTTTT ATCAGAAAAA TATAG 55873 |||||||||| |||||||||| ||||| GAACTGTTTT ATCAGAAAAA TATAG 527 hqPGS_C09HBa0278J12.1-_SGN-E248954+ (56857 56655,56196 55873) ******************************************************************************** EST sequence 238 +strand 530 n (File: SGN-E303905+) 1 GAGGAGAGAG TCGAAGCTAC CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 61 CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 121 CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 181 ACTCCGTTTC TGCTTTTCTC AGCAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 241 CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 301 CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACCAA 361 GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC 421 AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC 481 AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG Predicted gene structure (within gDNA segment 57494 to 55263): Exon 1 56854 56655 ( 200 n); cDNA 5 205 ( 201 n); score: 0.988 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55873 ( 324 n); cDNA 206 530 ( 325 n); score: 0.992 MATCH C09HBa0278J12.1- SGN-E303905+ 0.990 524 0.989 C PGS_C09HBa0278J12.1-_SGN-E303905+ (56854 56655,56196 55873) Alignment (genomic DNA sequence = upper lines): AGAGAGTCGA AGCTA-CAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGTCGA AGCTACCAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 64 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 124 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 184 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 205 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 205 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 205 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 205 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 205 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 205 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 205 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 206 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 266 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 326 CCAGTTACCG GTTACTATAG GCCGGAAGGA -CAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CCAAGCAAAT GAGATTGACG CTGCTGAGCT 386 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 446 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 55897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 506 AACTGTTTTA TCAGAAAAAT ATAG 55873 |||||||||| |||||||||| |||| AACTGTTTTA TCAGAAAAAT ATAG 530 hqPGS_C09HBa0278J12.1-_SGN-E303905+ (56854 56655,56196 55873) ******************************************************************************** EST sequence 363 +strand 523 n (File: SGN-E245301+) 1 GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 61 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 121 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 181 TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 241 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 301 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 361 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 421 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 481 AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAG Predicted gene structure (within gDNA segment 57453 to 55263): Exon 1 56853 56655 ( 199 n); cDNA 1 199 ( 199 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55873 ( 324 n); cDNA 200 523 ( 324 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245301+ 1.000 523 1.000 C PGS_C09HBa0278J12.1-_SGN-E245301+ (56853 56655,56196 55873) Alignment (genomic DNA sequence = upper lines): GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 56794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 60 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 56734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 120 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 56674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 180 TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA 56614 |||||||||| ||||||||| TTTCTGCTTT TCTCAGCAG. .......... .......... .......... .......... 199 TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG 56554 .......... .......... .......... .......... .......... .......... 199 GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA 56494 .......... .......... .......... .......... .......... .......... 199 CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT 56434 .......... .......... .......... .......... .......... .......... 199 TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC 56374 .......... .......... .......... .......... .......... .......... 199 AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA 56314 .......... .......... .......... .......... .......... .......... 199 ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT 56254 .......... .......... .......... .......... .......... .......... 199 TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG 56194 ||| .......... .......... .......... .......... .......... .......GCG 202 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 56134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 262 CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 56074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC 322 AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 56014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG 382 GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 55954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG 442 ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 55894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA GTGAAGGAAC 502 TGTTTTATCA GAAAAATATA G 55873 |||||||||| |||||||||| | TGTTTTATCA GAAAAATATA G 523 hqPGS_C09HBa0278J12.1-_SGN-E245301+ (56853 56655,56196 55873) ******************************************************************************** EST sequence 365 +strand 520 n (File: SGN-E245327+) 1 GAGTCGAAGC TACAGAATTT CAGTTCTCCG CTGCGGGGGC GCGATAGCCA AACTCCTTCC 61 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 121 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 181 TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 241 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 301 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 361 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 421 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 481 AGAGAATTTA CTGAAGGAAC TGTTTTATCA GAAAAATATA Predicted gene structure (within gDNA segment 57451 to 55264): Exon 1 56851 56655 ( 197 n); cDNA 1 197 ( 197 n); score: 0.975 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55874 ( 323 n); cDNA 198 520 ( 323 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E245327+ 0.988 520 1.000 C PGS_C09HBa0278J12.1-_SGN-E245327+ (56851 56655,56196 55874) Alignment (genomic DNA sequence = upper lines): GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 56792 |||||||||| |||||||||| |||||| ||| |||||| || | ||||||| |||||||||| GAGTCGAAGC TACAGAATTT CAGTTCTCCG CTGCGGGGGC GCGATAGCCA AACTCCTTCC 60 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 56732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 120 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 56672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 180 TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA 56612 |||||||||| ||||||| TCTGCTTTTC TCAGCAG... .......... .......... .......... .......... 197 TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT 56552 .......... .......... .......... .......... .......... .......... 197 GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA 56492 .......... .......... .......... .......... .......... .......... 197 GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT 56432 .......... .......... .......... .......... .......... .......... 197 CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA 56372 .......... .......... .......... .......... .......... .......... 197 CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT 56312 .......... .......... .......... .......... .......... .......... 197 GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG 56252 .......... .......... .......... .......... .......... .......... 197 TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG 56192 ||||| .......... .......... .......... .......... .......... .....GCGTG 202 GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 56132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 262 ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 56072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 322 TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 56012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 382 AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 55952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 442 CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG 55892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTACT GAAGGAACTG 502 TTTTATCAGA AAAATATA 55874 |||||||||| |||||||| TTTTATCAGA AAAATATA 520 hqPGS_C09HBa0278J12.1-_SGN-E245327+ (56851 56655,56196 55874) ******************************************************************************** EST sequence 407 +strand 535 n (File: SGN-E312650+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG 241 TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG 301 AGAGGAATCG GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA 361 AGGACAAGCA AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC 421 TGGAAGCAAC TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT 481 TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATAT Predicted gene structure (within gDNA segment 57467 to 55265): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55875 ( 322 n); cDNA 214 535 ( 322 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E312650+ 1.000 535 1.000 C PGS_C09HBa0278J12.1-_SGN-E312650+ (56867 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 262 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 322 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 382 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 442 AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 502 TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TAT 55875 |||||||||| |||||||||| |||||||||| ||| TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TAT 535 hqPGS_C09HBa0278J12.1-_SGN-E312650+ (56867 56655,56196 55875) ******************************************************************************** EST sequence 423 +strand 541 n (File: SGN-E249386+) 1 GAGGTTCGCC GGAGAAAGAG AGTCGAAGCT ACCAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG AACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 301 AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 361 CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGAATGC TGTTGAAACA 421 CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG 481 GAGATTTTCG ATCAACGAGA AAAGAAAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA 541 T Predicted gene structure (within gDNA segment 57497 to 55265): Exon 1 56867 56655 ( 213 n); cDNA 4 218 ( 215 n); score: 0.977 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.95), Pa: 1.000 (s: 1.00) Exon 2 56196 55875 ( 322 n); cDNA 219 541 ( 323 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E249386+ 0.984 535 0.989 C PGS_C09HBa0278J12.1-_SGN-E249386+ (56867 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTA-C AGAATTTCAG TTCGCCGCTG CGGAAGCTCC 56809 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC 63 ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 56749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 123 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAG-AC TCTCTCTGCT 56690 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGAAC TCTCTCTGCT 183 TTCGTCTCCG ACTCCGTTTC TGCTTTTCTC AGCAGGTAAT GATCATAACG TTCGTAATAT 56630 |||||||||| |||||||||| |||||||||| ||||| TTCGTCTCCG ACTCCGTTTC TGCTTTTCTC AGCAG..... .......... .......... 218 GAATCTAAAC AGGAAATATT CAAATTTTGA AATCGGTGAA CGTGAATGTG TACCGCTGTT 56570 .......... .......... .......... .......... .......... .......... 218 TCCGTTGAGT TTTTCGGTGT AAATCTAAAA TTTTCTCAGC TATATTGCAT CTGAGTTAAA 56510 .......... .......... .......... .......... .......... .......... 218 TTCTGTGGTT TTTTCACAGC ATTATTTTAG AATTATGCTA TGCATAACGA TAACAGGGGA 56450 .......... .......... .......... .......... .......... .......... 218 TCGAAGTTCT CTGTTTTTCT TAGCTGGTAA TAACCGAAAC ATCCGTTTAT CCCCTGGATA 56390 .......... .......... .......... .......... .......... .......... 218 AAAGGCGTTA GCATACAACT TTTTTAAATC AACAAGCGTG ATTGTCGCTG CACATTTTGA 56330 .......... .......... .......... .......... .......... .......... 218 ACTTTTTCTT TTATCAATGT AATAGTATAT TTTATACGTA CTTGGATTTT TTTTGTTCGT 56270 .......... .......... .......... .......... .......... .......... 218 AGCAAAAACA GAGGATTGTA TCGGCGGCTA ATTTGCTGTG ATGTGAATGT GAATTTTTTG 56210 .......... .......... .......... .......... .......... .......... 218 TGTGTATGTA CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA 56150 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA 265 AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT 56090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT 325 CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG 56030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG 385 ACGCTGCTGA GCTCCGGAAG -ATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 55971 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACGCTGCTGA GCTCCGGAAG AATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 445 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 55911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 505 GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATAT 55875 ||||||||| |||||||||| |||||||||| |||||| AAATTTAGTG AAGGAACTGT TTTATCAGAA AAATAT 541 hqPGS_C09HBa0278J12.1-_SGN-E249386+ (56867 56655,56196 55875) ******************************************************************************** EST sequence 230 +strand 541 n (File: SGN-E271534+) 1 TTCGCCCGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCCGCTGC GGAAGCTCCA 61 TAGCCCAACC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 121 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CCTCTAAGAC CTCTCTCTGC 181 TTTCGTCTCC CACCTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCC AGCGGCATCA 241 CAAGGTGCCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA 301 AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG 361 GCCGGAAGGA CCAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA 421 CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG 481 GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA 541 T Predicted gene structure (within gDNA segment 57529 to 55265): Exon 1 56866 56655 ( 212 n); cDNA 1 217 ( 217 n); score: 0.927 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.88), Pa: 1.000 (s: 0.90) Exon 2 56196 55875 ( 322 n); cDNA 218 541 ( 324 n); score: 0.981 MATCH C09HBa0278J12.1- SGN-E271534+ 0.960 534 0.987 C PGS_C09HBa0278J12.1-_SGN-E271534+ (56866 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CG-CCGCTGC GGAAGCTCCA 56808 |||||| ||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TTCGCCCGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCCGCTGC GGAAGCTCCA 60 TAG-CCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 56749 ||| |||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCCAACC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 120 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA -CTCTAAGA- CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CCTCTAAGAC CTCTCTCTGC 180 TTTCGTCTCC GA-CTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| | ||||||| |||||||||| ||||||| TTTCGTCTCC CACCTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATG-CAG CGGCATCACA AGGTG-CAGT TTCCGGTGTA 56154 ||||| |||||| ||| |||||||||| ||||| |||| |||||||||| .......... .....GCGTG GATATGCCAG CGGCATCACA AGGTGCCAGT TTCCGGTGTA 262 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 56094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 322 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 56034 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACC AGCAAATGAG 382 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 55974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 442 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 55914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 502 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATAT 55875 |||||||||| |||||||||| |||||||||| ||||||||| AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATAT 541 hqPGS_C09HBa0278J12.1-_SGN-E271534+ (56866 56655,56196 55875) ******************************************************************************** EST sequence 241 +strand 533 n (File: SGN-E279698+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGGTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TGTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGGTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGATAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT ATCAGAAAAA TAT Predicted gene structure (within gDNA segment 57465 to 55265): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.991 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 2 56196 55875 ( 322 n); cDNA 212 533 ( 322 n); score: 0.994 MATCH C09HBa0278J12.1- SGN-E279698+ 0.992 533 1.000 C PGS_C09HBa0278J12.1-_SGN-E279698+ (56865 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGGTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 | |||||||| |||||||||| |||||||||| | TGTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GGTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGATACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGTTTTAT CAGAAAAATA T 55875 |||||||||| |||||||||| |||||||||| | TAGTGAAGGA ACTGTTTTAT CAGAAAAATA T 533 hqPGS_C09HBa0278J12.1-_SGN-E279698+ (56865 56655,56196 55875) ******************************************************************************** EST sequence 422 +strand 526 n (File: SGN-E249222+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGAACT CTCTCTGCTT TCGTCTCCGA 181 CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC 241 CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC 301 GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC 361 AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA 421 CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA 481 CGAGAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA AAATAT Predicted gene structure (within gDNA segment 57457 to 55265): Exon 1 56857 56655 ( 203 n); cDNA 1 204 ( 204 n); score: 0.988 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.95), Pa: 1.000 (s: 1.00) Exon 2 56196 55875 ( 322 n); cDNA 205 526 ( 322 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E249222+ 0.995 525 0.998 C PGS_C09HBa0278J12.1-_SGN-E249222+ (56857 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAG-ACT CTCTCTGCTT TCGTCTCCGA 56679 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGAACT CTCTCTGCTT TCGTCTCCGA 180 CTCCGTTTCT GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA 56619 |||||||||| |||||||||| |||| CTCCGTTTCT GCTTTTCTCA GCAG...... .......... .......... .......... 204 GGAAATATTC AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT 56559 .......... .......... .......... .......... .......... .......... 204 TTTCGGTGTA AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT 56499 .......... .......... .......... .......... .......... .......... 204 TTTCACAGCA TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC 56439 .......... .......... .......... .......... .......... .......... 204 TGTTTTTCTT AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG 56379 .......... .......... .......... .......... .......... .......... 204 CATACAACTT TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT 56319 .......... .......... .......... .......... .......... .......... 204 TATCAATGTA ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG 56259 .......... .......... .......... .......... .......... .......... 204 AGGATTGTAT CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC 56199 .......... .......... .......... .......... .......... .......... 204 AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA 56139 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA 262 AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 56079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 322 GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 56019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 382 CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC 55959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC 442 CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA 55899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA 502 GGAACTGTTT TATCAGAAAA ATAT 55875 |||||||||| |||||||||| |||| GGAACTGTTT TATCAGAAAA ATAT 526 hqPGS_C09HBa0278J12.1-_SGN-E249222+ (56857 56655,56196 55875) ******************************************************************************** EST sequence 364 +strand 519 n (File: SGN-E245272+) 1 GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC GCCATAGCCA AACTCCTTCC 61 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 121 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 181 TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 241 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 301 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 361 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 421 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 481 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAATAT Predicted gene structure (within gDNA segment 57451 to 55265): Exon 1 56851 56655 ( 197 n); cDNA 1 197 ( 197 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55875 ( 322 n); cDNA 198 519 ( 322 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245272+ 0.998 519 1.000 C PGS_C09HBa0278J12.1-_SGN-E245272+ (56851 56655,56196 55875) Alignment (genomic DNA sequence = upper lines): GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 56792 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC GCCATAGCCA AACTCCTTCC 60 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 56732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 120 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 56672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 180 TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA 56612 |||||||||| ||||||| TCTGCTTTTC TCAGCAG... .......... .......... .......... .......... 197 TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT 56552 .......... .......... .......... .......... .......... .......... 197 GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA 56492 .......... .......... .......... .......... .......... .......... 197 GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT 56432 .......... .......... .......... .......... .......... .......... 197 CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA 56372 .......... .......... .......... .......... .......... .......... 197 CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT 56312 .......... .......... .......... .......... .......... .......... 197 GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG 56252 .......... .......... .......... .......... .......... .......... 197 TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG 56192 ||||| .......... .......... .......... .......... .......... .....GCGTG 202 GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 56132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 262 ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 56072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 322 TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 56012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 382 AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 55952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 442 CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG 55892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG 502 TTTTATCAGA AAAATAT 55875 |||||||||| ||||||| TTTTATCAGA AAAATAT 519 hqPGS_C09HBa0278J12.1-_SGN-E245272+ (56851 56655,56196 55875) ******************************************************************************** EST sequence 336 +strand 525 n (File: SGN-E246914+) 1 AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 61 TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 121 ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA 181 CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC 241 CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC 301 GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC 361 AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA 421 CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA 481 CGAGAAAAGA GAATTTAATG AAGGAACTGT TTTATCAGAA AAATA Predicted gene structure (within gDNA segment 57458 to 55266): Exon 1 56858 56655 ( 204 n); cDNA 1 204 ( 204 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55876 ( 321 n); cDNA 205 525 ( 321 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E246914+ 0.998 525 1.000 C PGS_C09HBa0278J12.1-_SGN-E246914+ (56858 56655,56196 55876) Alignment (genomic DNA sequence = upper lines): AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 56799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 60 TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 56739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 120 ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA 56679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA 180 CTCCGTTTCT GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA 56619 |||||||||| |||||||||| |||| CTCCGTTTCT GCTTTTCTCA GCAG...... .......... .......... .......... 204 GGAAATATTC AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT 56559 .......... .......... .......... .......... .......... .......... 204 TTTCGGTGTA AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT 56499 .......... .......... .......... .......... .......... .......... 204 TTTCACAGCA TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC 56439 .......... .......... .......... .......... .......... .......... 204 TGTTTTTCTT AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG 56379 .......... .......... .......... .......... .......... .......... 204 CATACAACTT TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT 56319 .......... .......... .......... .......... .......... .......... 204 TATCAATGTA ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG 56259 .......... .......... .......... .......... .......... .......... 204 AGGATTGTAT CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC 56199 .......... .......... .......... .......... .......... .......... 204 AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA 56139 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA 262 AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 56079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 322 GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 56019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 382 CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC 55959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC 442 CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA 55899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAATGAA 502 GGAACTGTTT TATCAGAAAA ATA 55876 |||||||||| |||||||||| ||| GGAACTGTTT TATCAGAAAA ATA 525 hqPGS_C09HBa0278J12.1-_SGN-E246914+ (56858 56655,56196 55876) ******************************************************************************** EST sequence 385 +strand 517 n (File: SGN-E247331+) 1 GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 61 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 121 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 181 TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 241 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 301 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 361 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 421 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA 481 AGAGAATTTA GTGAAGGAAC TGTTTTATCA GAAAAAT Predicted gene structure (within gDNA segment 57451 to 55267): Exon 1 56851 56655 ( 197 n); cDNA 1 197 ( 197 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55877 ( 320 n); cDNA 198 517 ( 320 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E247331+ 1.000 517 1.000 C PGS_C09HBa0278J12.1-_SGN-E247331+ (56851 56655,56196 55877) Alignment (genomic DNA sequence = upper lines): GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 56792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 60 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 56732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 120 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 56672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 180 TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA 56612 |||||||||| ||||||| TCTGCTTTTC TCAGCAG... .......... .......... .......... .......... 197 TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT 56552 .......... .......... .......... .......... .......... .......... 197 GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA 56492 .......... .......... .......... .......... .......... .......... 197 GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT 56432 .......... .......... .......... .......... .......... .......... 197 CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA 56372 .......... .......... .......... .......... .......... .......... 197 CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT 56312 .......... .......... .......... .......... .......... .......... 197 GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG 56252 .......... .......... .......... .......... .......... .......... 197 TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG 56192 ||||| .......... .......... .......... .......... .......... .....GCGTG 202 GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 56132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 262 ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 56072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 322 TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 56012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 382 AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 55952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 442 CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG 55892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAATTTAGT GAAGGAACTG 502 TTTTATCAGA AAAAT 55877 |||||||||| ||||| TTTTATCAGA AAAAT 517 hqPGS_C09HBa0278J12.1-_SGN-E247331+ (56851 56655,56196 55877) ******************************************************************************** EST sequence 332 +strand 517 n (File: SGN-E244373+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGGTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGGTTCCGG TGTATCAGAA GGAGGGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGA GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT CGGAGATTTT 481 CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGT Predicted gene structure (within gDNA segment 57465 to 55281): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 0.94) Exon 2 56196 55891 ( 306 n); cDNA 212 517 ( 306 n); score: 0.984 MATCH C09HBa0278J12.1- SGN-E244373+ 0.988 517 1.000 C PGS_C09HBa0278J12.1-_SGN-E244373+ (56865 56655,56196 55891) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| || ||||||| |||||||||| | TCTCCGACTC CGGTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| | |||||||| || || |||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GGTTCCGGTG TATCAGAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 || ||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AGGGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGAGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 442 GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 55906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT 502 TAGTGAAGGA ACTGT 55891 |||||||||| ||||| TAGTGAAGGA ACTGT 517 hqPGS_C09HBa0278J12.1-_SGN-E244373+ (56865 56655,56196 55891) ******************************************************************************** EST sequence 328 +strand 512 n (File: SGN-E244320+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA GT Predicted gene structure (within gDNA segment 57471 to 55292): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 218 512 ( 295 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E244320+ 1.000 512 1.000 C PGS_C09HBa0278J12.1-_SGN-E244320+ (56871 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAGT 55902 |||||||||| AGAATTTAGT 512 hqPGS_C09HBa0278J12.1-_SGN-E244320+ (56871 56655,56196 55902) ******************************************************************************** EST sequence 379 +strand 511 n (File: SGN-E237667+) 1 TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 61 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 121 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 181 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA 241 AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG 301 TGGAGAGGAA TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC 361 GGAAGGACAA GCAAATGAGA TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG 421 ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG 481 ATTTTCGATC AACGAGAAAA GAGAATTTAG T Predicted gene structure (within gDNA segment 57470 to 55292): Exon 1 56870 56655 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 217 511 ( 295 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E237667+ 1.000 511 1.000 C PGS_C09HBa0278J12.1-_SGN-E237667+ (56870 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 56811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 60 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 56751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 120 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 180 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA 56631 |||||||||| |||||||||| |||||||||| |||||| TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... 216 TGAATCTAAA CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT 56571 .......... .......... .......... .......... .......... .......... 216 TTCCGTTGAG TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA 56511 .......... .......... .......... .......... .......... .......... 216 ATTCTGTGGT TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG 56451 .......... .......... .......... .......... .......... .......... 216 ATCGAAGTTC TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT 56391 .......... .......... .......... .......... .......... .......... 216 AAAAGGCGTT AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG 56331 .......... .......... .......... .......... .......... .......... 216 AACTTTTTCT TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG 56271 .......... .......... .......... .......... .......... .......... 216 TAGCAAAAAC AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT 56211 .......... .......... .......... .......... .......... .......... 216 GTGTGTATGT ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 56151 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 262 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 56091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 322 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 56031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 382 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 55971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 442 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 55911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 502 GAATTTAGT 55902 ||||||||| GAATTTAGT 511 hqPGS_C09HBa0278J12.1-_SGN-E237667+ (56870 56655,56196 55902) ******************************************************************************** EST sequence 220 +strand 504 n (File: SGN-E294601+) 1 GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 61 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 121 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 181 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA 241 GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG 301 GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 361 CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA 421 AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG 481 ATCAACGAGA AAAGAGAATT TAGT Predicted gene structure (within gDNA segment 57463 to 55292): Exon 1 56863 56655 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 210 504 ( 295 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E294601+ 1.000 504 1.000 C PGS_C09HBa0278J12.1-_SGN-E294601+ (56863 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 56804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 60 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 56744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 120 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 56684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 180 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT 56624 |||||||||| |||||||||| ||||||||| TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... .......... 209 AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT 56564 .......... .......... .......... .......... .......... .......... 209 GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT 56504 .......... .......... .......... .......... .......... .......... 209 GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG 56444 .......... .......... .......... .......... .......... .......... 209 TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC 56384 .......... .......... .......... .......... .......... .......... 209 GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT 56324 .......... .......... .......... .......... .......... .......... 209 TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA 56264 .......... .......... .......... .......... .......... .......... 209 AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA 56204 .......... .......... .......... .......... .......... .......... 209 TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 56144 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 262 TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 56084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 322 TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 56024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 382 CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 55964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 442 TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA 55904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT CAACGAGAAA AGAGAATTTA 502 GT 55902 || GT 504 hqPGS_C09HBa0278J12.1-_SGN-E294601+ (56863 56655,56196 55902) ******************************************************************************** EST sequence 180 +strand 500 n (File: SGN-E304564+) 1 GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 61 CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 121 CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 181 ACTCCGTTTC TGCTTTTCTC AGCAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT 241 CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT 301 CGGTGAAGAC TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG 361 CAAATGAGAT TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA 421 ACTGAAAATC TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA 481 ACGAGAAAAG AGAATTTAGT Predicted gene structure (within gDNA segment 57459 to 55292): Exon 1 56859 56655 ( 205 n); cDNA 1 205 ( 205 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 206 500 ( 295 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E304564+ 1.000 500 1.000 C PGS_C09HBa0278J12.1-_SGN-E304564+ (56859 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 56800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGAGA GTCGAAGCTA CAGAATTTCA GTTCGCCGCT GCGGAAGCTC CATAGCCAAA 60 CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 56740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTCCGC CGCAGCGTTC TTATTCAGAA ATTCTCTTGC TCCGACTCCG ATCTCGATAT 120 CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 56680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATAAGC AATGGCTCGT TCTTTCTCTA ACTCTAAGAC TCTCTCTGCT TTCGTCTCCG 180 ACTCCGTTTC TGCTTTTCTC AGCAGGTAAT GATCATAACG TTCGTAATAT GAATCTAAAC 56620 |||||||||| |||||||||| ||||| ACTCCGTTTC TGCTTTTCTC AGCAG..... .......... .......... .......... 205 AGGAAATATT CAAATTTTGA AATCGGTGAA CGTGAATGTG TACCGCTGTT TCCGTTGAGT 56560 .......... .......... .......... .......... .......... .......... 205 TTTTCGGTGT AAATCTAAAA TTTTCTCAGC TATATTGCAT CTGAGTTAAA TTCTGTGGTT 56500 .......... .......... .......... .......... .......... .......... 205 TTTTCACAGC ATTATTTTAG AATTATGCTA TGCATAACGA TAACAGGGGA TCGAAGTTCT 56440 .......... .......... .......... .......... .......... .......... 205 CTGTTTTTCT TAGCTGGTAA TAACCGAAAC ATCCGTTTAT CCCCTGGATA AAAGGCGTTA 56380 .......... .......... .......... .......... .......... .......... 205 GCATACAACT TTTTTAAATC AACAAGCGTG ATTGTCGCTG CACATTTTGA ACTTTTTCTT 56320 .......... .......... .......... .......... .......... .......... 205 TTATCAATGT AATAGTATAT TTTATACGTA CTTGGATTTT TTTTGTTCGT AGCAAAAACA 56260 .......... .......... .......... .......... .......... .......... 205 GAGGATTGTA TCGGCGGCTA ATTTGCTGTG ATGTGAATGT GAATTTTTTG TGTGTATGTA 56200 .......... .......... .......... .......... .......... .......... 205 CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC 56140 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC 262 AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT CATGGGTGCC 56080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT CATGGGTGCC 322 AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 56020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 382 GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 55960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 442 CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGT 55902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGT 500 hqPGS_C09HBa0278J12.1-_SGN-E304564+ (56859 56655,56196 55902) ******************************************************************************** EST sequence 252 +strand 498 n (File: SGN-E303228+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGNTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AATTTAGT Predicted gene structure (within gDNA segment 57457 to 55292): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 204 498 ( 295 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E303228+ 0.998 498 1.000 C PGS_C09HBa0278J12.1-_SGN-E303228+ (56857 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGT 55902 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GNTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGT 498 hqPGS_C09HBa0278J12.1-_SGN-E303228+ (56857 56655,56196 55902) ******************************************************************************** EST sequence 262 +strand 497 n (File: SGN-E279885+) 1 AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 61 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 121 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 181 CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG 241 GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG 301 TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA 361 ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT 421 GAAAATCTTT GAAGCTGCGC CCGTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG 481 AGAAAAGAGA ATTTAGT Predicted gene structure (within gDNA segment 57456 to 55292): Exon 1 56856 56655 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 203 497 ( 295 n); score: 0.993 MATCH C09HBa0278J12.1- SGN-E279885+ 0.996 497 1.000 C PGS_C09HBa0278J12.1-_SGN-E279885+ (56856 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 56797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 60 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 56737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 120 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 56677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 180 CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA TCTAAACAGG 56617 |||||||||| |||||||||| || CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... .......... 202 AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC GTTGAGTTTT 56557 .......... .......... .......... .......... .......... .......... 202 TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC TGTGGTTTTT 56497 .......... .......... .......... .......... .......... .......... 202 TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG AAGTTCTCTG 56437 .......... .......... .......... .......... .......... .......... 202 TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA GGCGTTAGCA 56377 .......... .......... .......... .......... .......... .......... 202 TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT TTTTCTTTTA 56317 .......... .......... .......... .......... .......... .......... 202 TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC AAAAACAGAG 56257 .......... .......... .......... .......... .......... .......... 202 GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT GTATGTACAG 56197 .......... .......... .......... .......... .......... .......... 202 GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 56137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 262 GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 322 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 382 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCC 442 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGT 55902 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGT 497 hqPGS_C09HBa0278J12.1-_SGN-E279885+ (56856 56655,56196 55902) ******************************************************************************** EST sequence 343 +strand 489 n (File: SGN-E281949+) 1 TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 61 GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 121 ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 181 GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 241 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 301 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 361 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 421 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGAAAAGA 481 GAATTTAGT Predicted gene structure (within gDNA segment 57448 to 55292): Exon 1 56848 56655 ( 194 n); cDNA 1 194 ( 194 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55902 ( 295 n); cDNA 195 489 ( 295 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E281949+ 1.000 489 1.000 C PGS_C09HBa0278J12.1-_SGN-E281949+ (56848 56655,56196 55902) Alignment (genomic DNA sequence = upper lines): TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 56789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC 60 GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 56729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA 120 ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 56669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT 180 GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA GGAAATATTC 56609 |||||||||| |||| GCTTTTCTCA GCAG...... .......... .......... .......... .......... 194 AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT TTTCGGTGTA 56549 .......... .......... .......... .......... .......... .......... 194 AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT TTTCACAGCA 56489 .......... .......... .......... .......... .......... .......... 194 TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC TGTTTTTCTT 56429 .......... .......... .......... .......... .......... .......... 194 AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG CATACAACTT 56369 .......... .......... .......... .......... .......... .......... 194 TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT TATCAATGTA 56309 .......... .......... .......... .......... .......... .......... 194 ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG AGGATTGTAT 56249 .......... .......... .......... .......... .......... .......... 194 CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC AGGCGTGGAT 56189 |||||||| .......... .......... .......... .......... .......... ..GCGTGGAT 202 ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG 56129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG 262 TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA 56069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA 322 CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA 56009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA 382 TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 55949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 442 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGT 55902 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGT 489 hqPGS_C09HBa0278J12.1-_SGN-E281949+ (56848 56655,56196 55902) ******************************************************************************** EST sequence 217 +strand 511 n (File: SGN-E201665+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAAAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT CAACGAGAAA AGAGAATTTA G Predicted gene structure (within gDNA segment 57471 to 55293): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55903 ( 294 n); cDNA 218 511 ( 294 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E201665+ 1.000 511 1.000 C PGS_C09HBa0278J12.1-_SGN-E201665+ (56871 56655,56196 55903) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 55912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG 502 AGAATTTAG 55903 ||||||||| AGAATTTAG 511 hqPGS_C09HBa0278J12.1-_SGN-E201665+ (56871 56655,56196 55903) ******************************************************************************** EST sequence 337 +strand 513 n (File: SGN-E247037+) 1 AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 61 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 121 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTT 181 TTTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA 241 TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 301 AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 361 AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 421 CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCTCC GTTGATCTCC GGTTACTCAT 481 CGGAGATTTT CGATCAACGA GAAAAGAGAA TTT Predicted gene structure (within gDNA segment 57475 to 55295): Exon 1 56875 56655 ( 221 n); cDNA 1 221 ( 221 n); score: 0.991 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.96), Pa: 1.000 (s: 1.00) Exon 2 56196 55905 ( 292 n); cDNA 222 513 ( 292 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E247037+ 0.994 513 1.000 C PGS_C09HBa0278J12.1-_SGN-E247037+ (56875 56655,56196 55905) Alignment (genomic DNA sequence = upper lines): AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 56816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 60 AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 56756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCCATA GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG 120 ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC 56696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTCCGATCT CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTT 180 TCTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG 56636 | |||||||| |||||||||| |||||||||| |||||||||| | TTTGCTTTCG TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... 221 TAATATGAAT CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC 56576 .......... .......... .......... .......... .......... .......... 221 GCTGTTTCCG TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA 56516 .......... .......... .......... .......... .......... .......... 221 GTTAAATTCT GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC 56456 .......... .......... .......... .......... .......... .......... 221 AGGGGATCGA AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC 56396 .......... .......... .......... .......... .......... .......... 221 TGGATAAAAG GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA 56336 .......... .......... .......... .......... .......... .......... 221 TTTTGAACTT TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT 56276 .......... .......... .......... .......... .......... .......... 221 GTTCGTAGCA AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT 56216 .......... .......... .......... .......... .......... .......... 221 TTTTTGTGTG TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 56156 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG 262 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 56096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA 322 AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 56036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG 382 AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 55976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA 442 AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 55916 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTTGAA GCTGCTCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA 502 AAAGAGAATT T 55905 |||||||||| | AAAGAGAATT T 513 hqPGS_C09HBa0278J12.1-_SGN-E247037+ (56875 56655,56196 55905) ******************************************************************************** EST sequence 340 +strand 492 n (File: SGN-E276508+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC CTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCTTTTGA AACACAGATC TGGAAGCAAC 421 TGAAAATCTT TGAAGCTGCG CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC 481 GAGAAAAGAG AA Predicted gene structure (within gDNA segment 57457 to 55298): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55908 ( 289 n); cDNA 204 492 ( 289 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E276508+ 0.996 492 1.000 C PGS_C09HBa0278J12.1-_SGN-E276508+ (56857 56655,56196 55908) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC CTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 55958 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGAAGAT GCTTTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC 442 GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 55908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATCTCC GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA 492 hqPGS_C09HBa0278J12.1-_SGN-E276508+ (56857 56655,56196 55908) ******************************************************************************** EST sequence 428 +strand 486 n (File: SGN-E246408+) 1 GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 61 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 121 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 181 TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 241 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 301 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 361 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 421 TCTTTGAAGC TGCGCCGNTG ATCTCCGGTT ACTCATCGGA GANTTTCGAT CAACGAGAAA 481 AGAGAA Predicted gene structure (within gDNA segment 57451 to 55298): Exon 1 56851 56655 ( 197 n); cDNA 1 197 ( 197 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55908 ( 289 n); cDNA 198 486 ( 289 n); score: 0.993 MATCH C09HBa0278J12.1- SGN-E246408+ 0.996 486 1.000 C PGS_C09HBa0278J12.1-_SGN-E246408+ (56851 56655,56196 55908) Alignment (genomic DNA sequence = upper lines): GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 56792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 60 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 56732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 120 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 56672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 180 TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA 56612 |||||||||| ||||||| TCTGCTTTTC TCAGCAG... .......... .......... .......... .......... 197 TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT 56552 .......... .......... .......... .......... .......... .......... 197 GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA 56492 .......... .......... .......... .......... .......... .......... 197 GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT 56432 .......... .......... .......... .......... .......... .......... 197 CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA 56372 .......... .......... .......... .......... .......... .......... 197 CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT 56312 .......... .......... .......... .......... .......... .......... 197 GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG 56252 .......... .......... .......... .......... .......... .......... 197 TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG 56192 ||||| .......... .......... .......... .......... .......... .....GCGTG 202 GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 56132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 262 ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 56072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 322 TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 56012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 382 AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 55952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGNTGAT 442 CTCCGGTTAC TCATCGGAGA TTTTCGATCA ACGAGAAAAG AGAA 55908 |||||||||| |||||||||| ||||||||| |||||||||| |||| CTCCGGTTAC TCATCGGAGA NTTTCGATCA ACGAGAAAAG AGAA 486 hqPGS_C09HBa0278J12.1-_SGN-E246408+ (56851 56655,56196 55908) ******************************************************************************** EST sequence 353 +strand 506 n (File: SGN-E247558+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TCCAGAATTT CAGTTCGCCG CTGCGGAAGC 61 CTCCATAGCC CAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 121 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 301 AGTGGAGAGG AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 361 CCGGAAGGAC AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC 421 AGATCTGGAA GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG 481 AGATTTTCGA TCAACGAGAA AAGAGA Predicted gene structure (within gDNA segment 57471 to 55299): Exon 1 56871 56655 ( 217 n); cDNA 1 218 ( 218 n); score: 0.979 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55909 ( 288 n); cDNA 219 506 ( 288 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E247558+ 0.991 505 0.998 C PGS_C09HBa0278J12.1-_SGN-E247558+ (56871 56655,56196 55909) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAG- 56813 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TCCAGAATTT CAGTTCGCCG CTGCGGAAGC 60 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 56753 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATAGCC CAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 120 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 180 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 218 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 218 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 218 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 218 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 218 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 218 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 218 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 218 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 262 CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 322 CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 56033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 382 TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 55973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACGCTGC TGAGCTCCGG AAGATGCTGT TGAAACACAG ATCTGGAAGC AACTGAAAAT 442 CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 55913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG ATTTTCGATC AACGAGAAAA 502 GAGA 55909 |||| GAGA 506 hqPGS_C09HBa0278J12.1-_SGN-E247558+ (56871 56655,56196 55909) ******************************************************************************** EST sequence 403 +strand 507 n (File: SGN-E247851+) 1 ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTGCAGAA TTTCAGTTCG CCGCTGCGGA 61 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 121 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 181 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GCGTGGATAT GCAGCGGCAT 241 CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA 301 AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA 361 GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC 421 ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCC GGTACTCATN 481 CGAGATTTTC GATCAACGAG AAAAGAG Predicted gene structure (within gDNA segment 57474 to 55300): Exon 1 56874 56655 ( 220 n); cDNA 1 220 ( 220 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55910 ( 287 n); cDNA 221 507 ( 287 n); score: 0.986 MATCH C09HBa0278J12.1- SGN-E247851+ 0.990 507 1.000 C PGS_C09HBa0278J12.1-_SGN-E247851+ (56874 56655,56196 55910) Alignment (genomic DNA sequence = upper lines): ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 56815 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTGCAGAA TTTCAGTTCG CCGCTGCGGA 60 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 56755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 120 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 56695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 180 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT 56635 |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... 220 AATATGAATC TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG 56575 .......... .......... .......... .......... .......... .......... 220 CTGTTTCCGT TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG 56515 .......... .......... .......... .......... .......... .......... 220 TTAAATTCTG TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA 56455 .......... .......... .......... .......... .......... .......... 220 GGGGATCGAA GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT 56395 .......... .......... .......... .......... .......... .......... 220 GGATAAAAGG CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT 56335 .......... .......... .......... .......... .......... .......... 220 TTTGAACTTT TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG 56275 .......... .......... .......... .......... .......... .......... 220 TTCGTAGCAA AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT 56215 .......... .......... .......... .......... .......... .......... 220 TTTTGTGTGT ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 56155 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 262 AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 56095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 322 GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 56035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 382 GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 55975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 442 ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA TCAACGAGAA 55915 |||||||||| |||||||||| ||||||| | ||||||| | |||||||||| |||||||||| ATCTTTGAAG CTGCGCCGTT GATCTCCCGG TACTCATNCG AGATTTTCGA TCAACGAGAA 502 AAGAG 55910 ||||| AAGAG 507 hqPGS_C09HBa0278J12.1-_SGN-E247851+ (56874 56655,56196 55910) ******************************************************************************** EST sequence 259 +strand 501 n (File: SGN-E304198+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGGCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG 241 TGCAGTTTCC GGTGTAGCAA AAGGAGCGCC AAGGAGCAAC GTGATGATGC AAAAGAAGTG 301 GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG 361 AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT 421 CTGGAAGCAA CTGAAAATCT TTGAAGCTGC GCCGTTGATC TGCGGTTACT CATCGGAGAT 481 TTTCGATCAA CGAGAAAAGA G Predicted gene structure (within gDNA segment 57467 to 55300): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 55910 ( 287 n); cDNA 214 501 ( 288 n); score: 0.984 MATCH C09HBa0278J12.1- SGN-E304198+ 0.989 500 0.998 C PGS_C09HBa0278J12.1-_SGN-E304198+ (56867 56655,56196 55910) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 || ||||||| |||||||||| |||||||||| ||| CGGCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 262 GGAGTGCCAA GGAGCAACGT GATGATGCAA AA-AAGTGGA GAGGAATCGG TGAAGACTTC 56089 |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GGAGCGCCAA GGAGCAACGT GATGATGCAA AAGAAGTGGA GAGGAATCGG TGAAGACTTC 322 ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 56029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 382 CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT 55969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT 442 GAAGCTGCGC CGTTGATCTC CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAG 55910 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGCTGCGC CGTTGATCTG CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAG 501 hqPGS_C09HBa0278J12.1-_SGN-E304198+ (56867 56655,56196 55910) ******************************************************************************** EST sequence 390 +strand 486 n (File: SGN-E208430+) 1 AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 61 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 121 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 181 CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG 241 TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT 301 GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA 361 TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG 421 AAAATCTTTG AAGCTGCGCC GTTGATCTCC GGTTACTCAT GGGAGATTTT CGATCAACGA 481 GAAAAG Predicted gene structure (within gDNA segment 57455 to 55302): Exon 1 56855 56655 ( 201 n); cDNA 1 201 ( 201 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55912 ( 285 n); cDNA 202 486 ( 285 n); score: 0.996 MATCH C09HBa0278J12.1- SGN-E208430+ 0.998 486 1.000 C PGS_C09HBa0278J12.1-_SGN-E208430+ (56855 56655,56196 55912) Alignment (genomic DNA sequence = upper lines): AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 56796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA GCCAAACTCC 60 TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 56736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT CGATATCATA 120 ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 56676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG TCTCCGACTC 180 CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT CTAAACAGGA 56616 |||||||||| |||||||||| | CGTTTCTGCT TTTCTCAGCA G......... .......... .......... .......... 201 AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG TTGAGTTTTT 56556 .......... .......... .......... .......... .......... .......... 201 CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT GTGGTTTTTT 56496 .......... .......... .......... .......... .......... .......... 201 CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA AGTTCTCTGT 56436 .......... .......... .......... .......... .......... .......... 201 TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG GCGTTAGCAT 56376 .......... .......... .......... .......... .......... .......... 201 ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT TTTCTTTTAT 56316 .......... .......... .......... .......... .......... .......... 201 CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA AAAACAGAGG 56256 .......... .......... .......... .......... .......... .......... 201 ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG TATGTACAGG 56196 | .......... .......... .......... .......... .......... .........G 202 CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 56136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG 262 AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG GGTGCCAGAT 322 CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC 382 CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 55956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA GCTGCGCCGT 442 TGATCTCCGG TTACTCATCG GAGATTTTCG ATCAACGAGA AAAG 55912 |||||||||| |||||||| | |||||||||| |||||||||| |||| TGATCTCCGG TTACTCATGG GAGATTTTCG ATCAACGAGA AAAG 486 hqPGS_C09HBa0278J12.1-_SGN-E208430+ (56855 56655,56196 55912) ******************************************************************************** EST sequence 395 +strand 497 n (File: SGN-E208983+) 1 TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 61 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 121 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 181 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA 241 AGGTGCAGTT TCCGGTGTAG CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCACAAAAG 301 TGGAGAGGAA TCGGTGAAGA CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC 361 GGAAGGACAA GCAAATGAGA TTGACGCTGC TGAGCTCCAG AAGATGCTGT TGAAACACAG 421 ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG 481 ATTTTCGATC AACGAGA Predicted gene structure (within gDNA segment 57470 to 55306): Exon 1 56870 56655 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55916 ( 281 n); cDNA 217 497 ( 281 n); score: 0.993 MATCH C09HBa0278J12.1- SGN-E208983+ 0.996 497 1.000 C PGS_C09HBa0278J12.1-_SGN-E208983+ (56870 56655,56196 55916) Alignment (genomic DNA sequence = upper lines): TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 56811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 60 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 56751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 120 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 180 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA 56631 |||||||||| |||||||||| |||||||||| |||||| TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... 216 TGAATCTAAA CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT 56571 .......... .......... .......... .......... .......... .......... 216 TTCCGTTGAG TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA 56511 .......... .......... .......... .......... .......... .......... 216 ATTCTGTGGT TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG 56451 .......... .......... .......... .......... .......... .......... 216 ATCGAAGTTC TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT 56391 .......... .......... .......... .......... .......... .......... 216 AAAAGGCGTT AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG 56331 .......... .......... .......... .......... .......... .......... 216 AACTTTTTCT TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG 56271 .......... .......... .......... .......... .......... .......... 216 TAGCAAAAAC AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT 56211 .......... .......... .......... .......... .......... .......... 216 GTGTGTATGT ACAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 56151 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCGTGG ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA 262 AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT 56091 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAGGAGTGC CAAGGAGCAA CGTGATGATG CACAAAAGTG GAGAGGAATC GGTGAAGACT 322 TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 56031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT 382 GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 55971 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCTGCTG AGCTCCAGAA GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT 442 TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGA 55916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTGAAGCTGC GCCGTTGATC TCCGGTTACT CATCGGAGAT TTTCGATCAA CGAGA 497 hqPGS_C09HBa0278J12.1-_SGN-E208983+ (56870 56655,56196 55916) ******************************************************************************** EST sequence 438 +strand 471 n (File: SGN-E248242+) 1 GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 61 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 121 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 181 TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA 241 GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG 301 ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG 361 ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA 421 TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA GATTTTCGAT C Predicted gene structure (within gDNA segment 57451 to 55313): Exon 1 56851 56655 ( 197 n); cDNA 1 197 ( 197 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55923 ( 274 n); cDNA 198 471 ( 274 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E248242+ 1.000 471 1.000 C PGS_C09HBa0278J12.1-_SGN-E248242+ (56851 56655,56196 55923) Alignment (genomic DNA sequence = upper lines): GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 56792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA AACTCCTTCC 60 GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 56732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT ATCATAATAA 120 GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 56672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC CGACTCCGTT 180 TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA ACAGGAAATA 56612 |||||||||| ||||||| TCTGCTTTTC TCAGCAG... .......... .......... .......... .......... 197 TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA GTTTTTCGGT 56552 .......... .......... .......... .......... .......... .......... 197 GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG TTTTTTCACA 56492 .......... .......... .......... .......... .......... .......... 197 GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT CTCTGTTTTT 56432 .......... .......... .......... .......... .......... .......... 197 CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT TAGCATACAA 56372 .......... .......... .......... .......... .......... .......... 197 CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC TTTTATCAAT 56312 .......... .......... .......... .......... .......... .......... 197 GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA CAGAGGATTG 56252 .......... .......... .......... .......... .......... .......... 197 TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG TACAGGCGTG 56192 ||||| .......... .......... .......... .......... .......... .....GCGTG 202 GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 56132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG CCAAGGAGCA 262 ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 56072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG CCAGATCCAG 322 TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 56012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT GAGCTCCGGA 382 AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 55952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG CGCCGTTGAT 442 CTCCGGTTAC TCATCGGAGA TTTTCGATC 55923 |||||||||| |||||||||| ||||||||| CTCCGGTTAC TCATCGGAGA TTTTCGATC 471 hqPGS_C09HBa0278J12.1-_SGN-E248242+ (56851 56655,56196 55923) ******************************************************************************** EST sequence 190 +strand 490 n (File: SGN-E304484+) 1 CTAAGTTCGC CGGATAAAGA GAGTCGAAGC TACAGAATTT CAGATCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGA TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA 301 GTGGAGAGGA ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATAGGC 361 CGGAAGGACA AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA 421 GATCTGGAAG CAACTGAGAA TCTTTGAAGC TGCGCCGTTG ATCTCCGGTT ACTCATCGGA 481 GATTTTCGAT Predicted gene structure (within gDNA segment 57606 to 55314): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 0.991 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 56196 55924 ( 273 n); cDNA 218 490 ( 273 n); score: 0.993 MATCH C09HBa0278J12.1- SGN-E304484+ 0.992 490 1.000 C PGS_C09HBa0278J12.1-_SGN-E304484+ (56871 56655,56196 55924) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||| ||||| |||||||||| |||||||||| ||| |||||| |||||||||| CTAAGTTCGC CGGATAAAGA GAGTCGAAGC TACAGAATTT CAGATCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| ||||||| || |||||||||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGATT CCGGTGTAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 56092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC 322 TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 56032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGGTG CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT 382 TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC 55972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TGACGCTGCT GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAGAATC 442 TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGAT 55924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGAAGCTG CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCGAT 490 hqPGS_C09HBa0278J12.1-_SGN-E304484+ (56871 56655,56196 55924) ******************************************************************************** EST sequence 300 +strand 478 n (File: SGN-E243091+) 1 CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 61 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 121 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 181 CGACTCCGTT TCTGCTTTTC TCAGCACGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT 241 TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCACAAAA GTGGACAGGA 301 ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGGTACCGGC TACTATAGGC CGGAAGGACA 361 AGCAAATGAG ATTGACGCTG CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG 421 CAACTGAAAA TCTTTGAAGC TGCGCCGTGG ATCTCCGGGG ACTCATCGGA GATGGTCG Predicted gene structure (within gDNA segment 57461 to 55046): Exon 1 56861 56655 ( 207 n); cDNA 1 207 ( 207 n); score: 0.995 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 55926 ( 271 n); cDNA 208 478 ( 271 n); score: 0.967 MATCH C09HBa0278J12.1- SGN-E243091+ 0.979 478 1.000 C PGS_C09HBa0278J12.1-_SGN-E243091+ (56861 56655,56196 55926) Alignment (genomic DNA sequence = upper lines): CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 56802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 60 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 56742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 120 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 56682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 180 CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA 56622 |||||||||| |||||||||| |||||| CGACTCCGTT TCTGCTTTTC TCAGCAC... .......... .......... .......... 207 ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA 56562 .......... .......... .......... .......... .......... .......... 207 GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG 56502 .......... .......... .......... .......... .......... .......... 207 TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT 56442 .......... .......... .......... .......... .......... .......... 207 CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT 56382 .......... .......... .......... .......... .......... .......... 207 TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC 56322 .......... .......... .......... .......... .......... .......... 207 TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA 56262 .......... .......... .......... .......... .......... .......... 207 CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG 56202 .......... .......... .......... .......... .......... .......... 207 TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 56142 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 262 CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 56082 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| |||||||||| CCAAGGAGCA ACGTGATGAT GCACAAAAGT GGACAGGAAT CGGTGAAGAC TTCATGGGTG 322 CCAGATCCAG TTACCGGTTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 56022 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| |||||||||| CCAGATCCAG GTACCGGCTA CTATAGGCCG GAAGGACAAG CAAATGAGAT TGACGCTGCT 382 GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 55962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCCGGA AGATGCTGTT GAAACACAGA TCTGGAAGCA ACTGAAAATC TTTGAAGCTG 442 CGCCGTTGAT CTCCGGTTAC TCATCGGAGA TTTTCG 55926 |||||| ||| |||||| || |||||||||| | ||| CGCCGTGGAT CTCCGGGGAC TCATCGGAGA TGGTCG 478 hqPGS_C09HBa0278J12.1-_SGN-E243091+ (56861 56655,56196 55926) ******************************************************************************** EST sequence 236 +strand 469 n (File: SGN-E335171+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAAG ATGCTGTGAA ACACAGATCT 421 GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC CGGTTACTC Predicted gene structure (within gDNA segment 57466 to 55330): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55940 ( 257 n); cDNA 213 469 ( 257 n); score: 0.986 MATCH C09HBa0278J12.1- SGN-E335171+ 0.993 469 1.000 C PGS_C09HBa0278J12.1-_SGN-E335171+ (56866 56655,56196 55940) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGG-AAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||| ||||| |||| ||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAAGAT GCTG-TGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 441 AAGCTGCGCC GTTGATCTCC GGTTACTC 55940 |||||||||| |||||||||| |||||||| AAGCTGCGCC GTTGATCTCC GGTTACTC 469 hqPGS_C09HBa0278J12.1-_SGN-E335171+ (56866 56655,56196 55940) ******************************************************************************** EST sequence 323 +strand 459 n (File: SGN-E244980+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG 301 GTGAAGACTT CATGGGTGCC AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA 361 AATGAGATTG ACGCTGCTGA GCTCCGGAAG ATGCATGTGA AACACAGATC TGGAAGCCAA 421 CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTAC Predicted gene structure (within gDNA segment 57457 to 55332): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55942 ( 255 n); cDNA 204 459 ( 256 n); score: 0.978 MATCH C09HBa0278J12.1- SGN-E244980+ 0.988 458 0.998 C PGS_C09HBa0278J12.1-_SGN-E244980+ (56857 56655,56196 55942) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 56078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG 322 ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 56018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC 382 TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAG-CAACT GAAAATCTTT GAAGCTGCGC 55959 |||||||||| || ||||| |||||||||| |||| ||||| |||||||||| |||||||||| TCCGGAAGAT GCATGTGAAA CACAGATCTG GAAGCCAACT GAAAATCTTT GAAGCTGCGC 442 CGTTGATCTC CGGTTAC 55942 |||||||||| ||||||| CGTTGATCTC CGGTTAC 459 hqPGS_C09HBa0278J12.1-_SGN-E244980+ (56857 56655,56196 55942) ******************************************************************************** EST sequence 228 +strand 467 n (File: SGN-E296185+) 1 TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 61 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 121 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 181 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC 241 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 301 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 361 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 421 ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGAT Predicted gene structure (within gDNA segment 57476 to 55342): Exon 1 56876 56655 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55952 ( 245 n); cDNA 223 467 ( 245 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E296185+ 1.000 467 1.000 C PGS_C09HBa0278J12.1-_SGN-E296185+ (56876 56655,56196 55952) Alignment (genomic DNA sequence = upper lines): TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 56817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACCCTAAG TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG 60 GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 56757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCAT AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 120 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 56697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 180 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC 56637 |||||||||| |||||||||| |||||||||| |||||||||| || CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... 222 GTAATATGAA TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC 56577 .......... .......... .......... .......... .......... .......... 222 CGCTGTTTCC GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG 56517 .......... .......... .......... .......... .......... .......... 222 AGTTAAATTC TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA 56457 .......... .......... .......... .......... .......... .......... 222 CAGGGGATCG AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC 56397 .......... .......... .......... .......... .......... .......... 222 CTGGATAAAA GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC 56337 .......... .......... .......... .......... .......... .......... 222 ATTTTGAACT TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT 56277 .......... .......... .......... .......... .......... .......... 222 TGTTCGTAGC AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA 56217 .......... .......... .......... .......... .......... .......... 222 TTTTTTGTGT GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 56157 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT 262 GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 56097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAAAG GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG 322 AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTCAT GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT 382 GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 55977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATTGACG CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA 442 AAATCTTTGA AGCTGCGCCG TTGAT 55952 |||||||||| |||||||||| ||||| AAATCTTTGA AGCTGCGCCG TTGAT 467 hqPGS_C09HBa0278J12.1-_SGN-E296185+ (56876 56655,56196 55952) ******************************************************************************** EST sequence 406 +strand 450 n (File: SGN-E247963+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTGCAGA ATTTCAGTGC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGGTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTACGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGACTACGG TGTAGCAAAA GGAGTGCCAC GGAGCAACGT GATGATGCAC AAAAGTGGAG 301 AGGAATCGGC GAAGACTTCA TGGGTGCCAG ATCCAGTGAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGGTGAGC TCCGGAAGAT GCTGTGGAAA CACAGATCTG 421 GAAGCAACTG AAAATCTGTG AAGCTGCGCC Predicted gene structure (within gDNA segment 57465 to 55231): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.981 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 0.94) Exon 2 56196 55958 ( 239 n); cDNA 212 450 ( 239 n); score: 0.958 MATCH C09HBa0278J12.1- SGN-E247963+ 0.969 450 1.000 C PGS_C09HBa0278J12.1-_SGN-E247963+ (56865 56655,56196 55958) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| ||||| |||| |||||||| | |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTGCAGA ATTTCAGTGC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGGTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 ||| |||||| |||||||||| |||||||||| | TCTACGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| | | ||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GACTACGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 ||||||| || |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| AGTGCCACGG AGCAACGTGA TGATGCACAA AAGTGGAGAG GAATCGGCGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTGACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCTTTGAA 55966 || ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| TGGTGAGCTC CGGAAGATGC TGTGGAAACA CAGATCTGGA AGCAACTGAA AATCTGTGAA 442 GCTGCGCC 55958 |||||||| GCTGCGCC 450 hqPGS_C09HBa0278J12.1-_SGN-E247963+ (56865 56655,56196 55958) ******************************************************************************** EST sequence 366 +strand 445 n (File: SGN-E367872+) 1 GCCGGAGAAA GAGAGGCGAA GCTACAGAAT CTCAGTTCGC CGCTGCGGAA GCTCCATAGC 61 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 121 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 181 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG CGTGGTTATG CAGCGGCATC ACAAGGTGCA 241 GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG 301 GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 361 CAGGCAAATG ACATTGACGC TGCTGAGCTC CGGAAGACGC TGTTGAAACA CAGATCTGGA 421 AGCAACTGAA AATCTTTGAA GCTGC Predicted gene structure (within gDNA segment 57742 to 55351): Exon 1 56863 56655 ( 209 n); cDNA 1 209 ( 209 n); score: 0.990 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 56196 55961 ( 236 n); cDNA 210 445 ( 236 n); score: 0.983 MATCH C09HBa0278J12.1- SGN-E367872+ 0.987 445 1.000 C PGS_C09HBa0278J12.1-_SGN-E367872+ (56863 56655,56196 55961) Alignment (genomic DNA sequence = upper lines): GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 56804 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| GCCGGAGAAA GAGAGGCGAA GCTACAGAAT CTCAGTTCGC CGCTGCGGAA GCTCCATAGC 60 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 56744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 120 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 56684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 180 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT 56624 |||||||||| |||||||||| ||||||||| TCCGACTCCG TTTCTGCTTT TCTCAGCAG. .......... .......... .......... 209 AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT 56564 .......... .......... .......... .......... .......... .......... 209 GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT 56504 .......... .......... .......... .......... .......... .......... 209 GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG 56444 .......... .......... .......... .......... .......... .......... 209 TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC 56384 .......... .......... .......... .......... .......... .......... 209 GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT 56324 .......... .......... .......... .......... .......... .......... 209 TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA 56264 .......... .......... .......... .......... .......... .......... 209 AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA 56204 .......... .......... .......... .......... .......... .......... 209 TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 56144 ||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCG TGGTTATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 262 TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 56084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA ATCGGTGAAG ACTTCATGGG 322 TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA AGCAAATGAG ATTGACGCTG 56024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TGCCAGATCC AGTTACCGGT TACTATAGGC CGGAAGGACA GGCAAATGAC ATTGACGCTG 382 CTGAGCTCCG GAAGATGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 55964 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGCTCCG GAAGACGCTG TTGAAACACA GATCTGGAAG CAACTGAAAA TCTTTGAAGC 442 TGC 55961 ||| TGC 445 hqPGS_C09HBa0278J12.1-_SGN-E367872+ (56863 56655,56196 55961) ******************************************************************************** EST sequence 437 +strand 448 n (File: SGN-E248178+) 1 GGTTCGCCGG AGAAAGAGAG CCTAAGCTAC ATAATTCTAG GGCGCCGCTG CGGAAGCTCC 61 ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 121 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT 181 TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG 241 GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG 301 GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG 361 AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT 421 CTGGAAGCAA CTGAAAATCT TTGAAGCT Predicted gene structure (within gDNA segment 57846 to 55353): Exon 1 56867 56655 ( 213 n); cDNA 2 214 ( 213 n); score: 0.967 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55963 ( 234 n); cDNA 215 448 ( 234 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E248178+ 0.984 447 0.998 C PGS_C09HBa0278J12.1-_SGN-E248178+ (56867 56655,56196 55963) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| ||||||||| | |||||||| |||| || ||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGC CTAAGCTACA TAATTCTAGG GCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 214 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 214 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 214 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 214 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 214 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 214 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 214 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 214 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 56148 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA 263 GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 56088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA 323 TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 56028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC 383 GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 55968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG 443 AAGCT 55963 ||||| AAGCT 448 hqPGS_C09HBa0278J12.1-_SGN-E248178+ (56867 56655,56196 55963) ******************************************************************************** EST sequence 435 +strand 446 n (File: SGN-E301298+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 421 GGAAGCAACT GAAAATCTTT GAAGCT Predicted gene structure (within gDNA segment 57466 to 55353): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55963 ( 234 n); cDNA 213 446 ( 234 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E301298+ 1.000 446 1.000 C PGS_C09HBa0278J12.1-_SGN-E301298+ (56866 56655,56196 55963) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 55967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA 442 AGCT 55963 |||| AGCT 446 hqPGS_C09HBa0278J12.1-_SGN-E301298+ (56866 56655,56196 55963) ******************************************************************************** EST sequence 162 +strand 523 n (File: SGN-E304793+) 1 GCCTTTTTCC CTCCTCATTC TCCATCTCTA TATATACTTC CCCATTCTCT CCTCCATTTC 61 TCCTCGCTTA TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG 121 TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA 181 TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA 241 CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG 301 ATATGCAGCG GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA 361 CGTGATGATG CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT 421 TACCGGTTAC TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA 481 GATGCTGTTG AAACACAGAT CTGGAAGCAA CTGAAAATCT TTG Predicted gene structure (within gDNA segment 57548 to 55358): Exon 1 56948 56655 ( 294 n); cDNA 1 294 ( 294 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55968 ( 229 n); cDNA 295 523 ( 229 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E304793+ 1.000 523 1.000 C PGS_C09HBa0278J12.1-_SGN-E304793+ (56948 56655,56196 55968) Alignment (genomic DNA sequence = upper lines): GCCTTTTTCC CTCCTCATTC TCCATCTCTA TATATACTTC CCCATTCTCT CCTCCATTTC 56889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTTTCC CTCCTCATTC TCCATCTCTA TATATACTTC CCCATTCTCT CCTCCATTTC 60 TCCTCGCTTA TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG 56829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCGCTTA TGTAACCCTA AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG 120 TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA 56769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA 180 TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA 56709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTTGCT CCGACTCCGA TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA 240 CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGTAATG 56649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CTCTAAGACT CTCTCTGCTT TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAG...... 294 ATCATAACGT TCGTAATATG AATCTAAACA GGAAATATTC AAATTTTGAA ATCGGTGAAC 56589 .......... .......... .......... .......... .......... .......... 294 GTGAATGTGT ACCGCTGTTT CCGTTGAGTT TTTCGGTGTA AATCTAAAAT TTTCTCAGCT 56529 .......... .......... .......... .......... .......... .......... 294 ATATTGCATC TGAGTTAAAT TCTGTGGTTT TTTCACAGCA TTATTTTAGA ATTATGCTAT 56469 .......... .......... .......... .......... .......... .......... 294 GCATAACGAT AACAGGGGAT CGAAGTTCTC TGTTTTTCTT AGCTGGTAAT AACCGAAACA 56409 .......... .......... .......... .......... .......... .......... 294 TCCGTTTATC CCCTGGATAA AAGGCGTTAG CATACAACTT TTTTAAATCA ACAAGCGTGA 56349 .......... .......... .......... .......... .......... .......... 294 TTGTCGCTGC ACATTTTGAA CTTTTTCTTT TATCAATGTA ATAGTATATT TTATACGTAC 56289 .......... .......... .......... .......... .......... .......... 294 TTGGATTTTT TTTGTTCGTA GCAAAAACAG AGGATTGTAT CGGCGGCTAA TTTGCTGTGA 56229 .......... .......... .......... .......... .......... .......... 294 TGTGAATGTG AATTTTTTGT GTGTATGTAC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 56169 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GCGTGGAT ATGCAGCGGC ATCACAAGGT 322 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 56109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 382 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 56049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 442 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 55989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 502 GGAAGCAACT GAAAATCTTT G 55968 |||||||||| |||||||||| | GGAAGCAACT GAAAATCTTT G 523 hqPGS_C09HBa0278J12.1-_SGN-E304793+ (56948 56655,56196 55968) ******************************************************************************** EST sequence 296 +strand 437 n (File: SGN-E243287+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG 421 GAAGCAACTG AAAATCT Predicted gene structure (within gDNA segment 57465 to 55361): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55971 ( 226 n); cDNA 212 437 ( 226 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E243287+ 1.000 437 1.000 C PGS_C09HBa0278J12.1-_SGN-E243287+ (56865 56655,56196 55971) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCT 55971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA AGCAACTGAA AATCT 437 hqPGS_C09HBa0278J12.1-_SGN-E243287+ (56865 56655,56196 55971) ******************************************************************************** EST sequence 198 +strand 409 n (File: SGN-E337946+) 1 GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG CAGCGTTCTT 61 ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA TGGCTCGTTC 121 TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG 181 CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC GGTGTAGCAA AAGGAGTGCC 241 AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGAATCG GTGAAGACTT CATGGGTGCC 301 AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 361 GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCT Predicted gene structure (within gDNA segment 57437 to 55361): Exon 1 56837 56655 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55971 ( 226 n); cDNA 184 409 ( 226 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E337946+ 1.000 409 1.000 C PGS_C09HBa0278J12.1-_SGN-E337946+ (56837 56655,56196 55971) Alignment (genomic DNA sequence = upper lines): GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG CAGCGTTCTT 56778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG CAGCGTTCTT 60 ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA TGGCTCGTTC 56718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA TGGCTCGTTC 120 TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG 56658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG 180 CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG GAAATATTCA AATTTTGAAA 56598 ||| CAG....... .......... .......... .......... .......... .......... 183 TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT TTCGGTGTAA ATCTAAAATT 56538 .......... .......... .......... .......... .......... .......... 183 TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT TTCACAGCAT TATTTTAGAA 56478 .......... .......... .......... .......... .......... .......... 183 TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT GTTTTTCTTA GCTGGTAATA 56418 .......... .......... .......... .......... .......... .......... 183 ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC ATACAACTTT TTTAAATCAA 56358 .......... .......... .......... .......... .......... .......... 183 CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT ATCAATGTAA TAGTATATTT 56298 .......... .......... .......... .......... .......... .......... 183 TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA GGATTGTATC GGCGGCTAAT 56238 .......... .......... .......... .......... .......... .......... 183 TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA GGCGTGGATA TGCAGCGGCA 56178 ||||||||| |||||||||| .......... .......... .......... .......... .GCGTGGATA TGCAGCGGCA 202 TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 56118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA 262 AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 56058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT 322 AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 55998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA 382 CACAGATCTG GAAGCAACTG AAAATCT 55971 |||||||||| |||||||||| ||||||| CACAGATCTG GAAGCAACTG AAAATCT 409 hqPGS_C09HBa0278J12.1-_SGN-E337946+ (56837 56655,56196 55971) ******************************************************************************** EST sequence 208 +strand 447 n (File: SGN-E295294+) 1 TCACCCTAAG TTCGCCGGAG AAAGAGAGTC TAAGCTACAG AATTTCAGTT CGCCGCTGCG 61 GAAGCTCCAT AGCCAAACTC CTTCCGGCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC 121 GACTCCGATC TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT 181 CTCTGCTTTC GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC 241 ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA 301 AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA 361 TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA 421 ACACAGATCT GGAAGCAACT GAAAATC Predicted gene structure (within gDNA segment 57494 to 55362): Exon 1 56874 56655 ( 220 n); cDNA 3 222 ( 220 n); score: 0.991 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55972 ( 225 n); cDNA 223 447 ( 225 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E295294+ 0.996 445 0.996 C PGS_C09HBa0278J12.1-_SGN-E295294+ (56874 56655,56196 55972) Alignment (genomic DNA sequence = upper lines): ACCCTAAGTT CGCCGGAGAA AGAGAGTCGA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 56815 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ACCCTAAGTT CGCCGGAGAA AGAGAGTCTA AGCTACAGAA TTTCAGTTCG CCGCTGCGGA 62 AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 56755 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AGCTCCATAG CCAAACTCCT TCCGGCGCAG CGTTCTTATT CAGAAATTCT CTTGCTCCGA 122 CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 56695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT CTCTAACTCT AAGACTCTCT 182 CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG GTAATGATCA TAACGTTCGT 56635 |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCGT CTCCGACTCC GTTTCTGCTT TTCTCAGCAG .......... .......... 222 AATATGAATC TAAACAGGAA ATATTCAAAT TTTGAAATCG GTGAACGTGA ATGTGTACCG 56575 .......... .......... .......... .......... .......... .......... 222 CTGTTTCCGT TGAGTTTTTC GGTGTAAATC TAAAATTTTC TCAGCTATAT TGCATCTGAG 56515 .......... .......... .......... .......... .......... .......... 222 TTAAATTCTG TGGTTTTTTC ACAGCATTAT TTTAGAATTA TGCTATGCAT AACGATAACA 56455 .......... .......... .......... .......... .......... .......... 222 GGGGATCGAA GTTCTCTGTT TTTCTTAGCT GGTAATAACC GAAACATCCG TTTATCCCCT 56395 .......... .......... .......... .......... .......... .......... 222 GGATAAAAGG CGTTAGCATA CAACTTTTTT AAATCAACAA GCGTGATTGT CGCTGCACAT 56335 .......... .......... .......... .......... .......... .......... 222 TTTGAACTTT TTCTTTTATC AATGTAATAG TATATTTTAT ACGTACTTGG ATTTTTTTTG 56275 .......... .......... .......... .......... .......... .......... 222 TTCGTAGCAA AAACAGAGGA TTGTATCGGC GGCTAATTTG CTGTGATGTG AATGTGAATT 56215 .......... .......... .......... .......... .......... .......... 222 TTTTGTGTGT ATGTACAGGC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 56155 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GC GTGGATATGC AGCGGCATCA CAAGGTGCAG TTTCCGGTGT 264 AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 56095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG AATCGGTGAA 324 GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 56035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC AAGCAAATGA 384 GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 55975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA GCAACTGAAA 444 ATC 55972 ||| ATC 447 hqPGS_C09HBa0278J12.1-_SGN-E295294+ (56874 56655,56196 55972) ******************************************************************************** EST sequence 297 +strand 436 n (File: SGN-E245071+) 1 AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC 61 ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 121 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT 181 TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG 241 GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAAAAAAGTG 301 GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC TATAGGCCGG 361 AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG AAACACAGAT 421 CTGGAAGCAA CTGAAA Predicted gene structure (within gDNA segment 57468 to 55365): Exon 1 56868 56655 ( 214 n); cDNA 1 214 ( 214 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55975 ( 222 n); cDNA 215 436 ( 222 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245071+ 1.000 436 1.000 C PGS_C09HBa0278J12.1-_SGN-E245071+ (56868 56655,56196 55975) Alignment (genomic DNA sequence = upper lines): AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC 56809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCGCCGG AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC 60 ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 56749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCCAAAC TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA 120 TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT 56689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGATATC ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT 180 TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG 56629 |||||||||| |||||||||| |||||||||| |||| TCGTCTCCGA CTCCGTTTCT GCTTTTCTCA GCAG...... .......... .......... 214 AATCTAAACA GGAAATATTC AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT 56569 .......... .......... .......... .......... .......... .......... 214 CCGTTGAGTT TTTCGGTGTA AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT 56509 .......... .......... .......... .......... .......... .......... 214 TCTGTGGTTT TTTCACAGCA TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT 56449 .......... .......... .......... .......... .......... .......... 214 CGAAGTTCTC TGTTTTTCTT AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA 56389 .......... .......... .......... .......... .......... .......... 214 AAGGCGTTAG CATACAACTT TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA 56329 .......... .......... .......... .......... .......... .......... 214 CTTTTTCTTT TATCAATGTA ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA 56269 .......... .......... .......... .......... .......... .......... 214 GCAAAAACAG AGGATTGTAT CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT 56209 .......... .......... .......... .......... .......... .......... 214 GTGTATGTAC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA 56149 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA 262 AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC 56089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC 322 ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 56029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA 382 CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAA 55975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAA 436 hqPGS_C09HBa0278J12.1-_SGN-E245071+ (56868 56655,56196 55975) ******************************************************************************** EST sequence 434 +strand 425 n (File: SGN-E301387+) 1 TTCGCCGGAG AAAGAGAGTC GGGGCTGCTT AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AAGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTGCCG GTGTACCAAA AGGAGTGCCT ACGAGCACCG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG CGAAGACTTC ATGGGTGCCA GATCCAATTA CCGGCTACTA TAAGCCGGAA 361 AGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTGTTGAA ACACAGATCT 421 GGAAG Predicted gene structure (within gDNA segment 57466 to 55374): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 0.972 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 0.96) Exon 2 56196 55984 ( 213 n); cDNA 213 425 ( 213 n); score: 0.953 MATCH C09HBa0278J12.1- SGN-E301387+ 0.962 425 1.000 C PGS_C09HBa0278J12.1-_SGN-E301387+ (56866 56655,56196 55984) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| | ||| | |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GGGGCTGCTT AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| | GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AA........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||| ||||| ||| |||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTGCCGGT GTACCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 ||||||| | ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| GAGTGCCTAC GAGCACCGTG ATGATGCAAA AAAGTGGAGA GGAATCGGCG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||| ||||| || ||||||| ||||||| | |||||||||| |||||||||| GGGTGCCAGA TCCAATTACC GGCTACTATA AGCCGGAAAG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAG 55984 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGCTGAGCT CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAG 425 hqPGS_C09HBa0278J12.1-_SGN-E301387+ (56866 56655,56196 55984) ******************************************************************************** EST sequence 304 +strand 420 n (File: SGN-E244946+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACACATCTG Predicted gene structure (within gDNA segment 57465 to 55324): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55988 ( 209 n); cDNA 212 420 ( 209 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E244946+ 0.998 420 1.000 C PGS_C09HBa0278J12.1-_SGN-E244946+ (56865 56655,56196 55988) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTG 55988 |||||||||| |||||||||| |||||||||| || ||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CACATCTG 420 hqPGS_C09HBa0278J12.1-_SGN-E244946+ (56865 56655,56196 55988) ******************************************************************************** EST sequence 322 +strand 420 n (File: SGN-E244843+) 1 TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGC GATGATGCAA AAAAGGGGAG 301 AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGTTACTAT AGGCCGGAAG 361 GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT GCTGTTGAAA CACAGATCTG Predicted gene structure (within gDNA segment 57465 to 55378): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 55988 ( 209 n); cDNA 212 420 ( 209 n); score: 0.990 MATCH C09HBa0278J12.1- SGN-E244843+ 0.995 420 1.000 C PGS_C09HBa0278J12.1-_SGN-E244843+ (56865 56655,56196 55988) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| |||||||||| | TCTCCGACTC CGTTTCTGCT TTTCTCAGCA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GAATCGGTGA AGACTTCATG 56086 |||||||||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| AGTGCCAAGG AGCAACGCGA TGATGCAAAA AAGGGGAGAG GAATCGGTGA AGACTTCATG 322 GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 56026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA CAAGCAAATG AGATTGACGC 382 TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTG 55988 |||||||||| |||||||||| |||||||||| |||||||| TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTG 420 hqPGS_C09HBa0278J12.1-_SGN-E244843+ (56865 56655,56196 55988) ******************************************************************************** EST sequence 331 +strand 406 n (File: SGN-E244342+) 1 AGAAAGAGAG TCTAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 61 TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 121 ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGTTT TCGTCTCCGA 181 CTCCGATTCT GCTTTTCTCA GCAGGCGTGG ATATGCAGCG GCATCACAAG GTGCAGCTTC 241 CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG CAGAAAAGTG GAGAGGAATC 301 GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGATAC TATAGGCCGG AAGGACAAGC 361 AAATGAGATT GACGCTGCTG AGCTGCGGAA GATGCTGTTG AAACAC Predicted gene structure (within gDNA segment 57575 to 55385): Exon 1 56858 56655 ( 204 n); cDNA 1 204 ( 204 n); score: 0.985 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.96), Pa: 1.000 (s: 0.98) Exon 2 56196 55995 ( 202 n); cDNA 205 406 ( 202 n); score: 0.980 MATCH C09HBa0278J12.1- SGN-E244342+ 0.983 406 1.000 C PGS_C09HBa0278J12.1-_SGN-E244342+ (56858 56655,56196 55995) Alignment (genomic DNA sequence = upper lines): AGAAAGAGAG TCGAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 56799 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAGAG TCTAAGCTAC AGAATTTCAG TTCGCCGCTG CGGAAGCTCC ATAGCCAAAC 60 TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 56739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTCCGCC GCAGCGTTCT TATTCAGAAA TTCTCTTGCT CCGACTCCGA TCTCGATATC 120 ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGCTT TCGTCTCCGA 56679 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ATAATAAGCA ATGGCTCGTT CTTTCTCTAA CTCTAAGACT CTCTCTGTTT TCGTCTCCGA 180 CTCCGTTTCT GCTTTTCTCA GCAGGTAATG ATCATAACGT TCGTAATATG AATCTAAACA 56619 ||||| |||| |||||||||| |||| CTCCGATTCT GCTTTTCTCA GCAG...... .......... .......... .......... 204 GGAAATATTC AAATTTTGAA ATCGGTGAAC GTGAATGTGT ACCGCTGTTT CCGTTGAGTT 56559 .......... .......... .......... .......... .......... .......... 204 TTTCGGTGTA AATCTAAAAT TTTCTCAGCT ATATTGCATC TGAGTTAAAT TCTGTGGTTT 56499 .......... .......... .......... .......... .......... .......... 204 TTTCACAGCA TTATTTTAGA ATTATGCTAT GCATAACGAT AACAGGGGAT CGAAGTTCTC 56439 .......... .......... .......... .......... .......... .......... 204 TGTTTTTCTT AGCTGGTAAT AACCGAAACA TCCGTTTATC CCCTGGATAA AAGGCGTTAG 56379 .......... .......... .......... .......... .......... .......... 204 CATACAACTT TTTTAAATCA ACAAGCGTGA TTGTCGCTGC ACATTTTGAA CTTTTTCTTT 56319 .......... .......... .......... .......... .......... .......... 204 TATCAATGTA ATAGTATATT TTATACGTAC TTGGATTTTT TTTGTTCGTA GCAAAAACAG 56259 .......... .......... .......... .......... .......... .......... 204 AGGATTGTAT CGGCGGCTAA TTTGCTGTGA TGTGAATGTG AATTTTTTGT GTGTATGTAC 56199 .......... .......... .......... .......... .......... .......... 204 AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA 56139 |||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ..GCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGCTTCCG GTGTAGCAAA AGGAGTGCCA 262 AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 56079 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGGAGCAACG TGATGATGCA GAAAAGTGGA GAGGAATCGG TGAAGACTTC ATGGGTGCCA 322 GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 56019 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCAGTTA CCGGATACTA TAGGCCGGAA GGACAAGCAA ATGAGATTGA CGCTGCTGAG 382 CTCCGGAAGA TGCTGTTGAA ACAC 55995 || ||||||| |||||||||| |||| CTGCGGAAGA TGCTGTTGAA ACAC 406 hqPGS_C09HBa0278J12.1-_SGN-E244342+ (56858 56655,56196 55995) ******************************************************************************** EST sequence 181 +strand 405 n (File: SGN-E337606+) 1 TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 61 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 121 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 181 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT 241 GCAGTTTCCG GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA 301 GAGGAATCGG TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA 361 GGACAAGCAA ATGAGATTGA CGCTGCTGAG CTCCGGAAGA TGCTG Predicted gene structure (within gDNA segment 57466 to 55394): Exon 1 56866 56655 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56004 ( 193 n); cDNA 213 405 ( 193 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E337606+ 1.000 405 1.000 C PGS_C09HBa0278J12.1-_SGN-E337606+ (56866 56655,56196 56004) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 60 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 120 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 180 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| |||||||||| |||||||||| || GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... 212 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 212 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 212 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 212 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 212 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 212 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 212 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 262 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 322 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 382 CTGCTGAGCT CCGGAAGATG CTG 56004 |||||||||| |||||||||| ||| CTGCTGAGCT CCGGAAGATG CTG 405 hqPGS_C09HBa0278J12.1-_SGN-E337606+ (56866 56655,56196 56004) ******************************************************************************** EST sequence 404 +strand 400 n (File: SGN-E288181+) 1 TTCGCCGGAG AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 61 GCCAAACTCC TTGCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGGTTCTGCT TTTCTCAGCA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGAATCGGC GAAGACTTCA TGGGTGCCAG ATCCAGTTAC CGGGTACTAT AAGCCGGAAG 361 GACAAGCGAA TGAATTGACG CTGTGAGCTC CGGAGATGCT Predicted gene structure (within gDNA segment 57555 to 54885): Exon 1 56866 56655 ( 212 n); cDNA 1 211 ( 211 n); score: 0.986 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 56005 ( 192 n); cDNA 212 400 ( 189 n); score: 0.964 MATCH C09HBa0278J12.1- SGN-E288181+ 0.975 404 1.010 C PGS_C09HBa0278J12.1-_SGN-E288181+ (56866 56655,56196 56005) Alignment (genomic DNA sequence = upper lines): TTCGCCGGAG AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 56807 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCGGAG -AAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT 59 AGCCAAACTC CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 56747 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAACTC CTTGCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC 119 TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 56687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCAT AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC 179 GTCTCCGACT CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA 56627 |||||||||| ||| |||||| |||||||||| || GTCTCCGACT CCGGTTCTGC TTTTCTCAGC AG........ .......... .......... 211 TCTAAACAGG AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC 56567 .......... .......... .......... .......... .......... .......... 211 GTTGAGTTTT TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC 56507 .......... .......... .......... .......... .......... .......... 211 TGTGGTTTTT TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG 56447 .......... .......... .......... .......... .......... .......... 211 AAGTTCTCTG TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA 56387 .......... .......... .......... .......... .......... .......... 211 GGCGTTAGCA TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT 56327 .......... .......... .......... .......... .......... .......... 211 TTTTCTTTTA TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC 56267 .......... .......... .......... .......... .......... .......... 211 AAAAACAGAG GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT 56207 .......... .......... .......... .......... .......... .......... 211 GTATGTACAG GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 56147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG 261 GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT 56087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GAGTGCCAAG GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGCG AAGACTTCAT 321 GGGTGCCAGA TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG 56027 |||||||||| |||||||||| || ||||||| ||||||||| |||||| ||| || ||||||| GGGTGCCAGA TCCAGTTACC GGGTACTATA AGCCGGAAGG ACAAGCGAAT GA-ATTGACG 380 CTGCTGAGCT CCGGAAGATG CT 56005 ||| |||||| |||| ||||| || CTG-TGAGCT CCGG-AGATG CT 400 hqPGS_C09HBa0278J12.1-_SGN-E288181+ (56866 56655,56196 56005) ******************************************************************************** EST sequence 413 +strand 423 n (File: SGN-E396536+) 1 CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 61 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 121 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 301 AGTGGAGAGG AATCGGTGAA AACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG 361 CCGGGAAGAC AAGCAAAATG AATTGACACT GCTGAGCTCC GGAAGAGGGG GGGGGGGGGG 421 GGG Predicted gene structure (within gDNA segment 57472 to 54851): Exon 1 56872 56655 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56010 ( 187 n); cDNA 219 405 ( 187 n); score: 0.957 MATCH C09HBa0278J12.1- SGN-E396536+ 0.980 405 0.957 C PGS_C09HBa0278J12.1-_SGN-E396536+ (56872 56655,56196 56010) Alignment (genomic DNA sequence = upper lines): CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 56813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 60 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 56753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 120 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 180 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 218 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 218 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 218 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 218 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 218 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 218 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 218 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 218 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 262 CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAAA 322 CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGAAGGACAA GCAAATGAGA 56033 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| ||||| | CTTCATGGGT GCCAGATCCA GTTACCGGTT ACTATAGGCC GGGAAGACAA GCAAAATGAA 382 TTGACGCTGC TGAGCTCCGG AAG 56010 ||||| |||| |||||||||| ||| TTGACACTGC TGAGCTCCGG AAG 405 hqPGS_C09HBa0278J12.1-_SGN-E396536+ (56872 56655,56196 56010) ******************************************************************************** EST sequence 165 +strand 389 n (File: SGN-E370691+) 1 AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 61 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 121 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 181 CCGTTTCTGC TTTTCTCAGC AGGCGTGGAT ATGCAGCGGC ATCACAAGGT GCAGTTTCCG 241 GTGTAGCAAA AGGAGTGCCA AGGAGCAACG TGATGATGCA AAAAAGTGGA GAGGAATCGG 301 TGAAGACTTC ATGGGTGCCA GATCCAGTTA CCGGTTACTA TAGGCCGGAA GGACAAGCTT 361 ATGAGATTGA CGCTGTTGAG CTGCGGAAG Predicted gene structure (within gDNA segment 57456 to 55121): Exon 1 56856 56655 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56010 ( 187 n); cDNA 203 389 ( 187 n); score: 0.979 MATCH C09HBa0278J12.1- SGN-E370691+ 0.990 389 1.000 C PGS_C09HBa0278J12.1-_SGN-E370691+ (56856 56655,56196 56010) Alignment (genomic DNA sequence = upper lines): AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 56797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 60 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 56737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 120 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 56677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 180 CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA TCTAAACAGG 56617 |||||||||| |||||||||| || CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... .......... 202 AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC GTTGAGTTTT 56557 .......... .......... .......... .......... .......... .......... 202 TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC TGTGGTTTTT 56497 .......... .......... .......... .......... .......... .......... 202 TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG AAGTTCTCTG 56437 .......... .......... .......... .......... .......... .......... 202 TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA GGCGTTAGCA 56377 .......... .......... .......... .......... .......... .......... 202 TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT TTTTCTTTTA 56317 .......... .......... .......... .......... .......... .......... 202 TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC AAAAACAGAG 56257 .......... .......... .......... .......... .......... .......... 202 GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT GTATGTACAG 56197 .......... .......... .......... .......... .......... .......... 202 GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 56137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 262 GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 322 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| ||| |||||| TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCTTAT GAGATTGACG CTGTTGAGCT 382 CCGGAAG 56010 |||||| GCGGAAG 389 hqPGS_C09HBa0278J12.1-_SGN-E370691+ (56856 56655,56196 56010) ******************************************************************************** EST sequence 333 +strand 401 n (File: SGN-E244472+) 1 AGGAATTCGG CACGAGGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA 61 GCTCCATAGC CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC 121 TCCGATCTCG ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC 181 TGCTTTCGTC TCCGACTCCG TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC 241 ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGGTGCAAAA 301 AAGTGGAGAG GAATCGGCGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG 361 GCCGGAAGGA CAAGCAAATG AGATTGACGC TGCTGAGCTC C Predicted gene structure (within gDNA segment 57617 to 55405): Exon 1 56856 56655 ( 202 n); cDNA 18 219 ( 202 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56015 ( 182 n); cDNA 220 401 ( 182 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E244472+ 0.995 384 0.958 C PGS_C09HBa0278J12.1-_SGN-E244472+ (56856 56655,56196 56015) Alignment (genomic DNA sequence = upper lines): AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 56797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAGTC GAAGCTACAG AATTTCAGTT CGCCGCTGCG GAAGCTCCAT AGCCAAACTC 77 CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 56737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCGCCGC AGCGTTCTTA TTCAGAAATT CTCTTGCTCC GACTCCGATC TCGATATCAT 137 AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 56677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGCAAT GGCTCGTTCT TTCTCTAACT CTAAGACTCT CTCTGCTTTC GTCTCCGACT 197 CCGTTTCTGC TTTTCTCAGC AGGTAATGAT CATAACGTTC GTAATATGAA TCTAAACAGG 56617 |||||||||| |||||||||| || CCGTTTCTGC TTTTCTCAGC AG........ .......... .......... .......... 219 AAATATTCAA ATTTTGAAAT CGGTGAACGT GAATGTGTAC CGCTGTTTCC GTTGAGTTTT 56557 .......... .......... .......... .......... .......... .......... 219 TCGGTGTAAA TCTAAAATTT TCTCAGCTAT ATTGCATCTG AGTTAAATTC TGTGGTTTTT 56497 .......... .......... .......... .......... .......... .......... 219 TCACAGCATT ATTTTAGAAT TATGCTATGC ATAACGATAA CAGGGGATCG AAGTTCTCTG 56437 .......... .......... .......... .......... .......... .......... 219 TTTTTCTTAG CTGGTAATAA CCGAAACATC CGTTTATCCC CTGGATAAAA GGCGTTAGCA 56377 .......... .......... .......... .......... .......... .......... 219 TACAACTTTT TTAAATCAAC AAGCGTGATT GTCGCTGCAC ATTTTGAACT TTTTCTTTTA 56317 .......... .......... .......... .......... .......... .......... 219 TCAATGTAAT AGTATATTTT ATACGTACTT GGATTTTTTT TGTTCGTAGC AAAAACAGAG 56257 .......... .......... .......... .......... .......... .......... 219 GATTGTATCG GCGGCTAATT TGCTGTGATG TGAATGTGAA TTTTTTGTGT GTATGTACAG 56197 .......... .......... .......... .......... .......... .......... 219 GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 56137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 279 GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||||| ||| |||||| |||||||||| |||||||| | |||||||||| |||||||||| GAGCAACGTG ATGGTGCAAA AAAGTGGAGA GGAATCGGCG AAGACTTCAT GGGTGCCAGA 339 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 399 CC 56015 || CC 401 hqPGS_C09HBa0278J12.1-_SGN-E244472+ (56856 56655,56196 56015) ******************************************************************************** EST sequence 307 +strand 347 n (File: SGN-E244911+) 1 CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 61 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 121 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 181 CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT 241 TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA 301 ATCGGTGAAG ACTTCATGGG TGCCAGATCC AGTTACCGGT TACTATA Predicted gene structure (within gDNA segment 57461 to 55447): Exon 1 56861 56655 ( 207 n); cDNA 1 207 ( 207 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56057 ( 140 n); cDNA 208 347 ( 140 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E244911+ 1.000 347 1.000 C PGS_C09HBa0278J12.1-_SGN-E244911+ (56861 56655,56196 56057) Alignment (genomic DNA sequence = upper lines): CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 56802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC TCCATAGCCA 60 AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 56742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC CGATCTCGAT 120 ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 56682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG CTTTCGTCTC 180 CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT ATGAATCTAA 56622 |||||||||| |||||||||| ||||||| CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... .......... 207 ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG TTTCCGTTGA 56562 .......... .......... .......... .......... .......... .......... 207 GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA AATTCTGTGG 56502 .......... .......... .......... .......... .......... .......... 207 TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG GATCGAAGTT 56442 .......... .......... .......... .......... .......... .......... 207 CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA TAAAAGGCGT 56382 .......... .......... .......... .......... .......... .......... 207 TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT GAACTTTTTC 56322 .......... .......... .......... .......... .......... .......... 207 TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC GTAGCAAAAA 56262 .......... .......... .......... .......... .......... .......... 207 CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT TGTGTGTATG 56202 .......... .......... .......... .......... .......... .......... 207 TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 56142 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC AAAAGGAGTG 262 CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 56082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGAAGAC TTCATGGGTG 322 CCAGATCCAG TTACCGGTTA CTATA 56057 |||||||||| |||||||||| ||||| CCAGATCCAG TTACCGGTTA CTATA 347 hqPGS_C09HBa0278J12.1-_SGN-E244911+ (56861 56655,56196 56057) ******************************************************************************** EST sequence 253 +strand 330 n (File: SGN-E303119+) 1 CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 61 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 121 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA 301 AGTGGAGAGG AATCGGTGAA GACTTCATGG Predicted gene structure (within gDNA segment 57472 to 55475): Exon 1 56872 56655 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56085 ( 112 n); cDNA 219 330 ( 112 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E303119+ 1.000 330 1.000 C PGS_C09HBa0278J12.1-_SGN-E303119+ (56872 56655,56196 56085) Alignment (genomic DNA sequence = upper lines): CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 56813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAGTTCG CCGGAGAAAG AGAGTCGAAG CTACAGAATT TCAGTTCGCC GCTGCGGAAG 60 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 56753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 120 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 180 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 218 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 218 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 218 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 218 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 218 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 218 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 218 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 218 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 262 CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 56093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGGAGT GCCAAGGAGC AACGTGATGA TGCAAAAAAG TGGAGAGGAA TCGGTGAAGA 322 CTTCATGG 56085 |||||||| CTTCATGG 330 hqPGS_C09HBa0278J12.1-_SGN-E303119+ (56872 56655,56196 56085) ******************************************************************************** EST sequence 301 +strand 318 n (File: SGN-E243096+) 1 CTAAGTTCGC CGGAGAAATA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 61 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 121 CCATCTCCAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 181 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGCG TGGATATGCA GCGGCATCAC 241 AAGGTGCAGT TTCCGGTGAA GCAAAAGGAG TGCCTTGGAG CAACGTGATG ATGCCACAAA 301 GTGGAGAGGA ATCGGTGA Predicted gene structure (within gDNA segment 57471 to 55486): Exon 1 56871 56655 ( 217 n); cDNA 1 217 ( 217 n); score: 0.986 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 56196 56096 ( 101 n); cDNA 218 318 ( 101 n); score: 0.950 MATCH C09HBa0278J12.1- SGN-E243096+ 0.975 318 1.000 C PGS_C09HBa0278J12.1-_SGN-E243096+ (56871 56655,56196 56096) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 56812 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAATA GAGTCGAAGC TACAGAATTT CAGTTCGCCG CTGCGGAAGC 60 TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 56752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATAGCCA AACTCCTTCC GCCGCAGCGT TCTTATTCAG AAATTCTCTT GCTCCGACTC 120 CGATCTCGAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 56692 | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCTCCAT ATCATAATAA GCAATGGCTC GTTCTTTCTC TAACTCTAAG ACTCTCTCTG 180 CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAGGTA ATGATCATAA CGTTCGTAAT 56632 |||||||||| |||||||||| |||||||||| ||||||| CTTTCGTCTC CGACTCCGTT TCTGCTTTTC TCAGCAG... .......... .......... 217 ATGAATCTAA ACAGGAAATA TTCAAATTTT GAAATCGGTG AACGTGAATG TGTACCGCTG 56572 .......... .......... .......... .......... .......... .......... 217 TTTCCGTTGA GTTTTTCGGT GTAAATCTAA AATTTTCTCA GCTATATTGC ATCTGAGTTA 56512 .......... .......... .......... .......... .......... .......... 217 AATTCTGTGG TTTTTTCACA GCATTATTTT AGAATTATGC TATGCATAAC GATAACAGGG 56452 .......... .......... .......... .......... .......... .......... 217 GATCGAAGTT CTCTGTTTTT CTTAGCTGGT AATAACCGAA ACATCCGTTT ATCCCCTGGA 56392 .......... .......... .......... .......... .......... .......... 217 TAAAAGGCGT TAGCATACAA CTTTTTTAAA TCAACAAGCG TGATTGTCGC TGCACATTTT 56332 .......... .......... .......... .......... .......... .......... 217 GAACTTTTTC TTTTATCAAT GTAATAGTAT ATTTTATACG TACTTGGATT TTTTTTGTTC 56272 .......... .......... .......... .......... .......... .......... 217 GTAGCAAAAA CAGAGGATTG TATCGGCGGC TAATTTGCTG TGATGTGAAT GTGAATTTTT 56212 .......... .......... .......... .......... .......... .......... 217 TGTGTGTATG TACAGGCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGTAGC 56152 ||||| |||||||||| |||||||||| |||||||||| |||||| ||| .......... .....GCGTG GATATGCAGC GGCATCACAA GGTGCAGTTT CCGGTGAAGC 262 AAAAGGAGTG CCAAGGAGCA ACGTGATGAT GCAAAAAAGT GGAGAGGAAT CGGTGA 56096 |||||||||| || |||||| |||||||||| || | ||||| |||||||||| |||||| AAAAGGAGTG CCTTGGAGCA ACGTGATGAT GCCACAAAGT GGAGAGGAAT CGGTGA 318 hqPGS_C09HBa0278J12.1-_SGN-E243096+ (56871 56655,56196 56096) ******************************************************************************** EST sequence 224 +strand 184 n (File: SGN-E272622+) 1 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 61 TCCGACTCCG TTTCTGCTTT TCTCAGCAAG CGTGGATATG CAGCGGCATC ACAAGGTGCA 121 GTTTCCGGTG TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG 181 GAAT Predicted gene structure (within gDNA segment 57343 to 55492): Exon 1 56743 56655 ( 89 n); cDNA 1 89 ( 89 n); score: 0.989 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 56102 ( 95 n); cDNA 90 184 ( 95 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E272622+ 0.995 184 1.000 C PGS_C09HBa0278J12.1-_SGN-E272622+ (56743 56655,56196 56102) Alignment (genomic DNA sequence = upper lines): ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 56684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 60 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT 56624 |||||||||| |||||||||| |||||||| TCCGACTCCG TTTCTGCTTT TCTCAGCAA. .......... .......... .......... 89 AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT 56564 .......... .......... .......... .......... .......... .......... 89 GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT 56504 .......... .......... .......... .......... .......... .......... 89 GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG 56444 .......... .......... .......... .......... .......... .......... 89 TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC 56384 .......... .......... .......... .......... .......... .......... 89 GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT 56324 .......... .......... .......... .......... .......... .......... 89 TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA 56264 .......... .......... .......... .......... .......... .......... 89 AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA 56204 .......... .......... .......... .......... .......... .......... 89 TGTACAGGCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 56144 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCG TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG 142 TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA AT 56102 |||||||||| |||||||||| |||||||||| |||||||||| || TGCCAAGGAG CAACGTGATG ATGCAAAAAA GTGGAGAGGA AT 184 hqPGS_C09HBa0278J12.1-_SGN-E272622+ (56743 56655,56196 56102) ******************************************************************************** EST sequence 418 +strand 304 n (File: SGN-E249099+) 1 TCGCCGGTTA AAGAGAGTCG AAGCTACACA ATTCTAGGGT GCCGCTGCGG AAGCTCCATA 61 GCCCAACTCC TTCCGCCGCA GCGTTCTTAT TCACAAATTC TCTTGCTCCG ACTCCGATCT 121 CGATATCATA ATAACCAATG GCGAATTCAA GCTCTAACTC TAAGACTCTC TCTGCTTTCG 181 TCTCCGACTC CGTTTCTGCT TTTCTCAACA GGCGTGGATA TGCAGCGGCA TCACAAGGTG 241 CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT GATGATGCAA AAAAGTGGAG 301 AGGA Predicted gene structure (within gDNA segment 57546 to 55494): Exon 1 56865 56655 ( 211 n); cDNA 1 211 ( 211 n); score: 0.915 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 56196 56104 ( 93 n); cDNA 212 304 ( 93 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E249099+ 0.941 304 1.000 C PGS_C09HBa0278J12.1-_SGN-E249099+ (56865 56655,56196 56104) Alignment (genomic DNA sequence = upper lines): TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG AAGCTCCATA 56806 ||||||| | |||||||||| |||||||| | ||| || |||||||||| |||||||||| TCGCCGGTTA AAGAGAGTCG AAGCTACACA ATTCTAGGGT GCCGCTGCGG AAGCTCCATA 60 GCCAAACTCC TTCCGCCGCA GCGTTCTTAT TCAGAAATTC TCTTGCTCCG ACTCCGATCT 56746 ||| |||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GCCCAACTCC TTCCGCCGCA GCGTTCTTAT TCACAAATTC TCTTGCTCCG ACTCCGATCT 120 CGATATCATA ATAAGCAATG GCTCGTTCTT TCTCTAACTC TAAGACTCTC TCTGCTTTCG 56686 |||||||||| |||| ||||| || ||| ||||||||| |||||||||| |||||||||| CGATATCATA ATAACCAATG GCGAATTCAA GCTCTAACTC TAAGACTCTC TCTGCTTTCG 180 TCTCCGACTC CGTTTCTGCT TTTCTCAGCA GGTAATGATC ATAACGTTCG TAATATGAAT 56626 |||||||||| |||||||||| ||||||| || | TCTCCGACTC CGTTTCTGCT TTTCTCAACA G......... .......... .......... 211 CTAAACAGGA AATATTCAAA TTTTGAAATC GGTGAACGTG AATGTGTACC GCTGTTTCCG 56566 .......... .......... .......... .......... .......... .......... 211 TTGAGTTTTT CGGTGTAAAT CTAAAATTTT CTCAGCTATA TTGCATCTGA GTTAAATTCT 56506 .......... .......... .......... .......... .......... .......... 211 GTGGTTTTTT CACAGCATTA TTTTAGAATT ATGCTATGCA TAACGATAAC AGGGGATCGA 56446 .......... .......... .......... .......... .......... .......... 211 AGTTCTCTGT TTTTCTTAGC TGGTAATAAC CGAAACATCC GTTTATCCCC TGGATAAAAG 56386 .......... .......... .......... .......... .......... .......... 211 GCGTTAGCAT ACAACTTTTT TAAATCAACA AGCGTGATTG TCGCTGCACA TTTTGAACTT 56326 .......... .......... .......... .......... .......... .......... 211 TTTCTTTTAT CAATGTAATA GTATATTTTA TACGTACTTG GATTTTTTTT GTTCGTAGCA 56266 .......... .......... .......... .......... .......... .......... 211 AAAACAGAGG ATTGTATCGG CGGCTAATTT GCTGTGATGT GAATGTGAAT TTTTTGTGTG 56206 .......... .......... .......... .......... .......... .......... 211 TATGTACAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 56146 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCGGTG TAGCAAAAGG 262 AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GA 56104 |||||||||| |||||||||| |||||||||| |||||||||| || AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAGAG GA 304 hqPGS_C09HBa0278J12.1-_SGN-E249099+ (56865 56655,56196 56104) ******************************************************************************** EST sequence 354 +strand 296 n (File: SGN-E245472+) 1 GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 61 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 121 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 181 TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAGG TGCAGTTTCC 241 GGTGTAGCAA AAGGAGTGCC AAGGAGCAAC GTGATGATGC AAAAAAGTGG AGAGGA Predicted gene structure (within gDNA segment 57457 to 55494): Exon 1 56857 56655 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56104 ( 93 n); cDNA 204 296 ( 93 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245472+ 1.000 296 1.000 C PGS_C09HBa0278J12.1-_SGN-E245472+ (56857 56655,56196 56104) Alignment (genomic DNA sequence = upper lines): GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 56798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT 60 CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 56738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA 120 TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 56678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC 180 TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG 56618 |||||||||| |||||||||| ||| TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... .......... 203 GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT 56558 .......... .......... .......... .......... .......... .......... 203 TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT 56498 .......... .......... .......... .......... .......... .......... 203 TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT 56438 .......... .......... .......... .......... .......... .......... 203 GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC 56378 .......... .......... .......... .......... .......... .......... 203 ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT 56318 .......... .......... .......... .......... .......... .......... 203 ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA 56258 .......... .......... .......... .......... .......... .......... 203 GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA 56198 .......... .......... .......... .......... .......... .......... 203 GGCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 56138 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GCGTGGATA TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA 262 GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGA 56104 |||||||||| |||||||||| |||||||||| |||| GGAGCAACGT GATGATGCAA AAAAGTGGAG AGGA 296 hqPGS_C09HBa0278J12.1-_SGN-E245472+ (56857 56655,56196 56104) ******************************************************************************** EST sequence 182 +strand 288 n (File: SGN-E337620+) 1 GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGTTGCGGAA GCTCCATAGC CTAACTCCTT 61 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 121 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 181 TTTCTGCTTT TCTCAGCAGG CGTGGATATG CAGCGGCATC ACAAGGTGCA GTTTCCTGTG 241 TAGCAAAAGG AGTGCCAAGG AGCAACGTGA TGATGCAAAA AAGTGGAG Predicted gene structure (within gDNA segment 57453 to 55498): Exon 1 56853 56655 ( 199 n); cDNA 1 199 ( 199 n); score: 0.990 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 56196 56108 ( 89 n); cDNA 200 288 ( 89 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E337620+ 0.990 288 1.000 C PGS_C09HBa0278J12.1-_SGN-E337620+ (56853 56655,56196 56108) Alignment (genomic DNA sequence = upper lines): GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC CAAACTCCTT 56794 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| | |||||||| GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGTTGCGGAA GCTCCATAGC CTAACTCCTT 60 CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 56734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG ATATCATAAT 120 AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 56674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC TCCGACTCCG 180 TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT AAACAGGAAA 56614 |||||||||| ||||||||| TTTCTGCTTT TCTCAGCAG. .......... .......... .......... .......... 199 TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT GAGTTTTTCG 56554 .......... .......... .......... .......... .......... .......... 199 GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT GGTTTTTTCA 56494 .......... .......... .......... .......... .......... .......... 199 CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG TTCTCTGTTT 56434 .......... .......... .......... .......... .......... .......... 199 TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC GTTAGCATAC 56374 .......... .......... .......... .......... .......... .......... 199 AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT TCTTTTATCA 56314 .......... .......... .......... .......... .......... .......... 199 ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA AACAGAGGAT 56254 .......... .......... .......... .......... .......... .......... 199 TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA TGTACAGGCG 56194 ||| .......... .......... .......... .......... .......... .......GCG 202 TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCGGTGTA GCAAAAGGAG TGCCAAGGAG 56134 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGGATATGCA GCGGCATCAC AAGGTGCAGT TTCCTGTGTA GCAAAAGGAG TGCCAAGGAG 262 CAACGTGATG ATGCAAAAAA GTGGAG 56108 |||||||||| |||||||||| |||||| CAACGTGATG ATGCAAAAAA GTGGAG 288 hqPGS_C09HBa0278J12.1-_SGN-E337620+ (56853 56655,56196 56108) ******************************************************************************** EST sequence 442 +strand 271 n (File: SGN-E249508+) 1 CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACCAGAATT TCAGTTCGCC GCTGCGGAAG 61 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 121 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 181 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGC GTGGATATGC AGCGGCATCA 241 CAAGGTGCAG TTTCCGGTGT AGCAAAAGGA G Predicted gene structure (within gDNA segment 57471 to 55534): Exon 1 56871 56655 ( 217 n); cDNA 1 218 ( 218 n); score: 0.988 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 56196 56144 ( 53 n); cDNA 219 271 ( 53 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E249508+ 0.991 270 0.996 C PGS_C09HBa0278J12.1-_SGN-E249508+ (56871 56655,56196 56144) Alignment (genomic DNA sequence = upper lines): CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TA-CAGAATT TCAGTTCGCC GCTGCGGAAG 56813 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CTAAGTTCGC CGGAGAAAGA GAGTCGAAGC TACCAGAATT TCAGTTCGCC GCTGCGGAAG 60 CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 56753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATAGCC AAACTCCTTC CGCCGCAGCG TTCTTATTCA GAAATTCTCT TGCTCCGACT 120 CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 56693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGATCTCGA TATCATAATA AGCAATGGCT CGTTCTTTCT CTAACTCTAA GACTCTCTCT 180 GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAGGT AATGATCATA ACGTTCGTAA 56633 |||||||||| |||||||||| |||||||||| |||||||| GCTTTCGTCT CCGACTCCGT TTCTGCTTTT CTCAGCAG.. .......... .......... 218 TATGAATCTA AACAGGAAAT ATTCAAATTT TGAAATCGGT GAACGTGAAT GTGTACCGCT 56573 .......... .......... .......... .......... .......... .......... 218 GTTTCCGTTG AGTTTTTCGG TGTAAATCTA AAATTTTCTC AGCTATATTG CATCTGAGTT 56513 .......... .......... .......... .......... .......... .......... 218 AAATTCTGTG GTTTTTTCAC AGCATTATTT TAGAATTATG CTATGCATAA CGATAACAGG 56453 .......... .......... .......... .......... .......... .......... 218 GGATCGAAGT TCTCTGTTTT TCTTAGCTGG TAATAACCGA AACATCCGTT TATCCCCTGG 56393 .......... .......... .......... .......... .......... .......... 218 ATAAAAGGCG TTAGCATACA ACTTTTTTAA ATCAACAAGC GTGATTGTCG CTGCACATTT 56333 .......... .......... .......... .......... .......... .......... 218 TGAACTTTTT CTTTTATCAA TGTAATAGTA TATTTTATAC GTACTTGGAT TTTTTTTGTT 56273 .......... .......... .......... .......... .......... .......... 218 CGTAGCAAAA ACAGAGGATT GTATCGGCGG CTAATTTGCT GTGATGTGAA TGTGAATTTT 56213 .......... .......... .......... .......... .......... .......... 218 TTGTGTGTAT GTACAGGCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 56153 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCGT GGATATGCAG CGGCATCACA AGGTGCAGTT TCCGGTGTAG 262 CAAAAGGAG 56144 ||||||||| CAAAAGGAG 271 hqPGS_C09HBa0278J12.1-_SGN-E249508+ (56871 56655,56196 56144) ******************************************************************************** EST sequence 263 +strand 238 n (File: SGN-E297291+) 1 GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 61 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 121 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 181 TCCGACTCCG GTTCTGGTTT TCTCAACAGG CGTGGATATG CCGCGGCATC ACAAGGGG Predicted gene structure (within gDNA segment 57463 to 55584): Exon 1 56863 56655 ( 209 n); cDNA 1 209 ( 209 n); score: 0.986 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.94), Pa: 1.000 (s: 0) Exon 2 56196 56170 ( 27 n); cDNA 210 236 ( 27 n); score: 0.963 MATCH C09HBa0278J12.1- SGN-E297291+ 0.986 236 0.992 C PGS_C09HBa0278J12.1-_SGN-E297291+ (56863 56655,56196 56170) Alignment (genomic DNA sequence = upper lines): GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 56804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAGAAA GAGAGTCGAA GCTACAGAAT TTCAGTTCGC CGCTGCGGAA GCTCCATAGC 60 CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 56744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTCCTT CCGCCGCAGC GTTCTTATTC AGAAATTCTC TTGCTCCGAC TCCGATCTCG 120 ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 56684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATAAT AAGCAATGGC TCGTTCTTTC TCTAACTCTA AGACTCTCTC TGCTTTCGTC 180 TCCGACTCCG TTTCTGCTTT TCTCAGCAGG TAATGATCAT AACGTTCGTA ATATGAATCT 56624 |||||||||| ||||| ||| ||||| ||| TCCGACTCCG GTTCTGGTTT TCTCAACAG. .......... .......... .......... 209 AAACAGGAAA TATTCAAATT TTGAAATCGG TGAACGTGAA TGTGTACCGC TGTTTCCGTT 56564 .......... .......... .......... .......... .......... .......... 209 GAGTTTTTCG GTGTAAATCT AAAATTTTCT CAGCTATATT GCATCTGAGT TAAATTCTGT 56504 .......... .......... .......... .......... .......... .......... 209 GGTTTTTTCA CAGCATTATT TTAGAATTAT GCTATGCATA ACGATAACAG GGGATCGAAG 56444 .......... .......... .......... .......... .......... .......... 209 TTCTCTGTTT TTCTTAGCTG GTAATAACCG AAACATCCGT TTATCCCCTG GATAAAAGGC 56384 .......... .......... .......... .......... .......... .......... 209 GTTAGCATAC AACTTTTTTA AATCAACAAG CGTGATTGTC GCTGCACATT TTGAACTTTT 56324 .......... .......... .......... .......... .......... .......... 209 TCTTTTATCA ATGTAATAGT ATATTTTATA CGTACTTGGA TTTTTTTTGT TCGTAGCAAA 56264 .......... .......... .......... .......... .......... .......... 209 AACAGAGGAT TGTATCGGCG GCTAATTTGC TGTGATGTGA ATGTGAATTT TTTGTGTGTA 56204 .......... .......... .......... .......... .......... .......... 209 TGTACAGGCG TGGATATGCA GCGGCATCAC AAGG 56170 ||| ||||||||| |||||||||| |||| .......GCG TGGATATGCC GCGGCATCAC AAGG 236 hqPGS_C09HBa0278J12.1-_SGN-E297291+ (56863 56655,56196 56170) ******************************************************************************** EST sequence 201 +strand 242 n (File: SGN-E243577+) 1 TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 61 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 121 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 181 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGCGT GGATATGCAG CGGCATCACA 241 AG Predicted gene structure (within gDNA segment 57470 to 55794): Exon 1 56870 56655 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0) Exon 2 56196 56171 ( 26 n); cDNA 217 242 ( 26 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E243577+ 1.000 242 1.000 C PGS_C09HBa0278J12.1-_SGN-E243577+ (56870 56655,56196 56171) Alignment (genomic DNA sequence = upper lines): TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 56811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTCGCC GGAGAAAGAG AGTCGAAGCT ACAGAATTTC AGTTCGCCGC TGCGGAAGCT 60 CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 56751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGCCAA ACTCCTTCCG CCGCAGCGTT CTTATTCAGA AATTCTCTTG CTCCGACTCC 120 GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 56691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGATA TCATAATAAG CAATGGCTCG TTCTTTCTCT AACTCTAAGA CTCTCTCTGC 180 TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAGGTAA TGATCATAAC GTTCGTAATA 56631 |||||||||| |||||||||| |||||||||| |||||| TTTCGTCTCC GACTCCGTTT CTGCTTTTCT CAGCAG.... .......... .......... 216 TGAATCTAAA CAGGAAATAT TCAAATTTTG AAATCGGTGA ACGTGAATGT GTACCGCTGT 56571 .......... .......... .......... .......... .......... .......... 216 TTCCGTTGAG TTTTTCGGTG TAAATCTAAA ATTTTCTCAG CTATATTGCA TCTGAGTTAA 56511 .......... .......... .......... .......... .......... .......... 216 ATTCTGTGGT TTTTTCACAG CATTATTTTA GAATTATGCT ATGCATAACG ATAACAGGGG 56451 .......... .......... .......... .......... .......... .......... 216 ATCGAAGTTC TCTGTTTTTC TTAGCTGGTA ATAACCGAAA CATCCGTTTA TCCCCTGGAT 56391 .......... .......... .......... .......... .......... .......... 216 AAAAGGCGTT AGCATACAAC TTTTTTAAAT CAACAAGCGT GATTGTCGCT GCACATTTTG 56331 .......... .......... .......... .......... .......... .......... 216 AACTTTTTCT TTTATCAATG TAATAGTATA TTTTATACGT ACTTGGATTT TTTTTGTTCG 56271 .......... .......... .......... .......... .......... .......... 216 TAGCAAAAAC AGAGGATTGT ATCGGCGGCT AATTTGCTGT GATGTGAATG TGAATTTTTT 56211 .......... .......... .......... .......... .......... .......... 216 GTGTGTATGT ACAGGCGTGG ATATGCAGCG GCATCACAAG 56171 |||||| |||||||||| |||||||||| .......... ....GCGTGG ATATGCAGCG GCATCACAAG 242 hqPGS_C09HBa0278J12.1-_SGN-E243577+ (56870 56655,56196 56171) ******************************************************************************** EST sequence 429 +strand 239 n (File: SGN-E245366+) 1 GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 61 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 121 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 181 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGCGTGGA TATGCAGCGG CATCACAAG Predicted gene structure (within gDNA segment 57467 to 55794): Exon 1 56867 56655 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 0) Exon 2 56196 56171 ( 26 n); cDNA 214 239 ( 26 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E245366+ 1.000 239 1.000 C PGS_C09HBa0278J12.1-_SGN-E245366+ (56867 56655,56196 56171) Alignment (genomic DNA sequence = upper lines): GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 56808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCCGGA GAAAGAGAGT CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA 60 TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 56748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCAAACT CCTTCCGCCG CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT 120 CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 56688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATATCA TAATAAGCAA TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT 180 CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA 56628 |||||||||| |||||||||| |||||||||| ||| CGTCTCCGAC TCCGTTTCTG CTTTTCTCAG CAG....... .......... .......... 213 ATCTAAACAG GAAATATTCA AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC 56568 .......... .......... .......... .......... .......... .......... 213 CGTTGAGTTT TTCGGTGTAA ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT 56508 .......... .......... .......... .......... .......... .......... 213 CTGTGGTTTT TTCACAGCAT TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC 56448 .......... .......... .......... .......... .......... .......... 213 GAAGTTCTCT GTTTTTCTTA GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA 56388 .......... .......... .......... .......... .......... .......... 213 AGGCGTTAGC ATACAACTTT TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC 56328 .......... .......... .......... .......... .......... .......... 213 TTTTTCTTTT ATCAATGTAA TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG 56268 .......... .......... .......... .......... .......... .......... 213 CAAAAACAGA GGATTGTATC GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG 56208 .......... .......... .......... .......... .......... .......... 213 TGTATGTACA GGCGTGGATA TGCAGCGGCA TCACAAG 56171 ||||||||| |||||||||| ||||||| .......... .GCGTGGATA TGCAGCGGCA TCACAAG 239 hqPGS_C09HBa0278J12.1-_SGN-E245366+ (56867 56655,56196 56171) ******************************************************************************** EST sequence 99 -strand 204 n (File: SGN-E244244-) 1 TTTATCAGAA AAATATACCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA 61 GCTTATTGTA ATATCTTTCT TTAATTAGTA TCTTTTATTC ATGCAAATGA AATAATTATA 121 GTATTAGTGT TAATCTTCGG GCTTTAGATC CTATTTTTTT CATCTTTTTT TTTTTGAATT 181 CTTCAATCTC CAGGTTTACG TATT Predicted gene structure (within gDNA segment 56500 to 55088): Exon 1 55890 55688 ( 203 n); cDNA 1 204 ( 204 n); score: 0.968 MATCH C09HBa0278J12.1- SGN-E244244- 0.968 203 0.995 C PGS_C09HBa0278J12.1-_SGN-E244244- (55890 55688) Alignment (genomic DNA sequence = upper lines): TTTATCAGAA AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA 55831 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTTATCAGAA AAATATACCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA 60 GCTTATTGTT ATATCTTTCT TTTATTAGTA TCTTTTATTC ATGCAAATGA AATAATTATA 55771 ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GCTTATTGTA ATATCTTTCT TTAATTAGTA TCTTTTATTC ATGCAAATGA AATAATTATA 120 GTATTAGTGT TAATCTTCGG GCTTTAGATC CTATTTTTTT CTTC-TTTTT TTTTTGAATT 55712 |||||||||| |||||||||| |||||||||| |||||||||| | || ||||| |||||||||| GTATTAGTGT TAATCTTCGG GCTTTAGATC CTATTTTTTT CATCTTTTTT TTTTTGAATT 180 CTTCAATCTC CAGGTTTACG TATT 55688 |||||||||| |||||||||| |||| CTTCAATCTC CAGGTTTACG TATT 204 hqPGS_C09HBa0278J12.1-_SGN-E244244- (55890 55688) ******************************************************************************** EST sequence 158 +strand 354 n (File: SGN-E551316+) 1 TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 61 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 121 TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 181 TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 241 ATTAGTGTTA ATCTTCGGGC TTTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 301 ACCCCCGGGG GGGGGCCCGG GCCCCTTTTC CCCCAAAGGG GGGCCCCAAA AAAA Predicted gene structure (within gDNA segment 56608 to 54235): Exon 1 56008 55745 ( 264 n); cDNA 1 264 ( 264 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E551316+ 1.000 264 0.746 C PGS_C09HBa0278J12.1-_SGN-E551316+ (56008 55745) Alignment (genomic DNA sequence = upper lines): TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 55949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTTGAA ACACAGATCT GGAAGCAACT GAAAATCTTT GAAGCTGCGC CGTTGATCTC 60 CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 55889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTACTCA TCGGAGATTT TCGATCAACG AGAAAAGAGA ATTTAGTGAA GGAACTGTTT 120 TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 55829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGAAAA ATATAGCAGT GTGAAATTTA CTCGTGCTTT GTTGCTTTTA AATTTTAAGC 180 TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 55769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGTTAT ATCTTTCTTT TATTAGTATC TTTTATTCAT GCAAATGAAA TAATTATAGT 240 ATTAGTGTTA ATCTTCGGGC TTTA 55745 |||||||||| |||||||||| |||| ATTAGTGTTA ATCTTCGGGC TTTA 264 hqPGS_C09HBa0278J12.1-_SGN-E551316+ (56008 55745) ******************************************************************************** EST sequence 168 +strand 284 n (File: SGN-E250207+) 1 ACAGATCTGG AAGCAACTGA ATTTCTTTGA AGCTGCGCCG TTGATCTCCG GGGGCTCATC 61 GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 121 ATTTTAGTGT GAATTCTACT TACGCTAGGT TGCTCTGCTA TATATCACAT ATGAGAATGG 181 CCTTCTTTGA TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAT 241 CTTCGGGCTT TAAAAAAAAA AACCCAGAAG AATATGGGAG AAAA Predicted gene structure (within gDNA segment 56596 to 54815): Exon 1 55996 55745 ( 252 n); cDNA 1 252 ( 252 n); score: 0.869 PPA cDNA 253 263 MATCH C09HBa0278J12.1- SGN-E250207+ 0.869 252 0.887 C PGS_C09HBa0278J12.1-_SGN-E250207+ (55996 55745) Alignment (genomic DNA sequence = upper lines): ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG TTGATCTCCG GTTACTCATC 55937 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| | |||||| ACAGATCTGG AAGCAACTGA ATTTCTTTGA AGCTGCGCCG TTGATCTCCG GGGGCTCATC 60 GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 55877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG AACTGTTTTA TCAGAAAAAT 120 ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA TTTTAAGCTT ATTGTTATAT 55817 || ||||| ||| | |||| ||| || |||| | | | | | | || || ATTTTAGTGT GAATTCTACT TACGCTAGGT TGCTCTGCTA TATATCACAT ATGAGAATGG 180 CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAT 55757 | |||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTTTGA TTAGTATCTT TTATTCATGC AAATGAAATA ATTATAGTAT TAGTGTTAAT 240 CTTCGGGCTT TA 55745 |||||||||| || CTTCGGGCTT TA 252 hqPGS_C09HBa0278J12.1-_SGN-E250207+ (55996 55745) ******************************************************************************** EST sequence 325 +strand 271 n (File: SGN-E308864+) 1 TACCACGAGG CTTATCTGGA AGCAACTGAA AATCTTTGAA GGGGGGCCGT TGATCTCCGG 61 TTACTCATCG GAGATTTTCG ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT 121 CAGAAAAATA TAGCAGTGTG AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA 181 TTGTTATATC TTTCTTTTAT TAGTATCTTT TATTCATGCA AATGAAATAA TTATAGTATT 241 AGTGTTAATC TTCGGGCTTT AAAAAAAAAA A Predicted gene structure (within gDNA segment 57010 to 55035): Exon 1 55992 55745 ( 248 n); cDNA 14 261 ( 248 n); score: 0.988 PPA cDNA 262 271 MATCH C09HBa0278J12.1- SGN-E308864+ 0.988 248 0.915 C PGS_C09HBa0278J12.1-_SGN-E308864+ (55992 55745) Alignment (genomic DNA sequence = upper lines): ATCTGGAAGC AACTGAAAAT CTTTGAAGCT GCGCCGTTGA TCTCCGGTTA CTCATCGGAG 55933 |||||||||| |||||||||| |||||||| | |||||||| |||||||||| |||||||||| ATCTGGAAGC AACTGAAAAT CTTTGAAGGG GGGCCGTTGA TCTCCGGTTA CTCATCGGAG 73 ATTTTCGATC AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG 55873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCGATC AACGAGAAAA GAGAATTTAG TGAAGGAACT GTTTTATCAG AAAAATATAG 133 CAGTGTGAAA TTTACTCGTG CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT 55813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGTGAAA TTTACTCGTG CTTTGTTGCT TTTAAATTTT AAGCTTATTG TTATATCTTT 193 CTTTTATTAG TATCTTTTAT TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATCTTC 55753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTATTAG TATCTTTTAT TCATGCAAAT GAAATAATTA TAGTATTAGT GTTAATCTTC 253 GGGCTTTA 55745 |||||||| GGGCTTTA 261 hqPGS_C09HBa0278J12.1-_SGN-E308864+ (55992 55745) ******************************************************************************** EST sequence 111 -strand 432 n (File: SGN-E367871-) 1 GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG 61 CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC 121 TATAGTCCGC AAGGACAAGC AAATGAGATT GACGCTGATG AGCTCCGGAA GATGCTGTTG 181 AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC CCCGTTGATC TCCGGTTACT 241 CATCGGAGAT TTTCGATCAT CGAAAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA 301 AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA GCGTTAATGT 361 TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AATATTAGTG 421 TTAAAAAAAA AA Predicted gene structure (within gDNA segment 56790 to 54961): Exon 1 56180 55759 ( 422 n); cDNA 1 423 ( 423 n); score: 0.975 MATCH C09HBa0278J12.1- SGN-E367871- 0.975 422 0.977 C PGS_C09HBa0278J12.1-_SGN-E367871- (56180 55759) Alignment (genomic DNA sequence = upper lines): GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG 56121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCACAAG GTGCAGTTTC CGGTGTAGCA AAAGGAGTGC CAAGGAGCAA CGTGATGATG 60 CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC 56061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAAGTG GAGAGGAATC GGTGAAGACT TCATGGGTGC CAGATCCAGT TACCGGTTAC 120 TATAGGCCGG AAGGACAAGC AAATGAGATT GACGCTGCTG AGCTCCGGAA GATGCTGTTG 56001 ||||| ||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TATAGTCCGC AAGGACAAGC AAATGAGATT GACGCTGATG AGCTCCGGAA GATGCTGTTG 180 AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC GCCGTTGATC TCCGGTTACT 55941 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAACACAGAT CTGGAAGCAA CTGAAAATCT TTGAAGCTGC CCCGTTGATC TCCGGTTACT 240 CATCGGAGAT TTTCGATCAA CGAGAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA 55881 |||||||||| ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CATCGGAGAT TTTCGATCAT CGAAAAAAGA GAATTTAGTG AAGGAACTGT TTTATCAGAA 300 AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA GC-TTATTGT 55822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||| ||| AAATATAGCA GTGTGAAATT TACTCGTGCT TTGTTGCTTT TAAATTTTAA GCGTTAATGT 360 TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AGTATTAGTG 55762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TATATCTTTC TTTTATTAGT ATCTTTTATT CATGCAAATG AAATAATTAT AATATTAGTG 420 TTA 55759 ||| TTA 423 hqPGS_C09HBa0278J12.1-_SGN-E367871- (56180 55759) ******************************************************************************** EST sequence 59 -strand 439 n (File: SGN-E304210-) 1 TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AAGTGGAGAG 61 GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 121 CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA 181 AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG 241 ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG 301 AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT 361 TAGTATCTTT TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTAAAA AAAAAAAAAG 421 AAAAATCTCG AGAGGGGGC Predicted gene structure (within gDNA segment 56774 to 54848): Exon 1 56164 55759 ( 406 n); cDNA 1 407 ( 407 n); score: 0.994 PPA cDNA 408 425 MATCH C09HBa0278J12.1- SGN-E304210- 0.994 406 0.925 C PGS_C09HBa0278J12.1-_SGN-E304210- (56164 55759) Alignment (genomic DNA sequence = upper lines): TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGC-AAAA AAGTGGAGAG 56106 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AAGTGGAGAG 60 GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 56046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCGGTGA AGACTTCATG GGTGCCAGAT CCAGTTACCG GTTACTATAG GCCGGAAGGA 120 CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA 55986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCAAATG AGATTGACGC TGCTGAGCTC CGGAAGATGC TGTTGAAACA CAGATCTGGA 180 AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG 55926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACTGAA AATCTTTGAA GCTGCGCCGT TGATCTCCGG TTACTCATCG GAGATTTTCG 240 ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG 55866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACGAGA AAAGAGAATT TAGTGAAGGA ACTGTTTTAT CAGAAAAATA TAGCAGTGTG 300 AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT 55806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTTACTC GTGCTTTGTT GCTTTTAAAT TTTAAGCTTA TTGTTATATC TTTCTTTTAT 360 TAGTATCTTT TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTA 55759 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAGTATCTTT TATTCATGCA AATGAAATAA TTATAGTATT AGTGTTA 407 hqPGS_C09HBa0278J12.1-_SGN-E304210- (56164 55759) ******************************************************************************** EST sequence 62 -strand 424 n (File: SGN-E200370-) 1 TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG 61 AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC 121 AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA 181 GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA 241 TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA 301 AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT 361 AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTAAAAA AAAAAAAAAA 421 AAAA Predicted gene structure (within gDNA segment 56774 to 54988): Exon 1 56164 55759 ( 406 n); cDNA 1 406 ( 406 n); score: 1.000 PPA cDNA 407 424 MATCH C09HBa0278J12.1- SGN-E200370- 1.000 406 0.958 C PGS_C09HBa0278J12.1-_SGN-E200370- (56164 55759) Alignment (genomic DNA sequence = upper lines): TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG 56105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCGGTGT AGCAAAAGGA GTGCCAAGGA GCAACGTGAT GATGCAAAAA AGTGGAGAGG 60 AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC 56045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGGTGAA GACTTCATGG GTGCCAGATC CAGTTACCGG TTACTATAGG CCGGAAGGAC 120 AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA 55985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAAATGA GATTGACGCT GCTGAGCTCC GGAAGATGCT GTTGAAACAC AGATCTGGAA 180 GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA 55925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACTGAAA ATCTTTGAAG CTGCGCCGTT GATCTCCGGT TACTCATCGG AGATTTTCGA 240 TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA 55865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACGAGAA AAGAGAATTT AGTGAAGGAA CTGTTTTATC AGAAAAATAT AGCAGTGTGA 300 AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT 55805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTACTCG TGCTTTGTTG CTTTTAAATT TTAAGCTTAT TGTTATATCT TTCTTTTATT 360 AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTA 55759 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGTATCTTTT ATTCATGCAA ATGAAATAAT TATAGTATTA GTGTTA 406 hqPGS_C09HBa0278J12.1-_SGN-E200370- (56164 55759) ******************************************************************************** EST sequence 225 +strand 330 n (File: SGN-E339873+) 1 AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 61 GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 121 CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGTGA 181 AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT TGTTGCTTTT 241 AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT CTTTTATTCA TGCAAATGAA 301 ATAATTATAG TATTAGTGTT AAAAAAAAAA Predicted gene structure (within gDNA segment 56679 to 55068): Exon 1 56079 55759 ( 321 n); cDNA 1 321 ( 321 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E339873+ 1.000 321 0.973 C PGS_C09HBa0278J12.1-_SGN-E339873+ (56079 55759) Alignment (genomic DNA sequence = upper lines): AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 56020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCAGTT ACCGGTTACT ATAGGCCGGA AGGACAAGCA AATGAGATTG ACGCTGCTGA 60 GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 55960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCGGAAG ATGCTGTTGA AACACAGATC TGGAAGCAAC TGAAAATCTT TGAAGCTGCG 120 CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGTGA 55900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTGATCT CCGGTTACTC ATCGGAGATT TTCGATCAAC GAGAAAAGAG AATTTAGTGA 180 AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT TGTTGCTTTT 55840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAACTGTT TTATCAGAAA AATATAGCAG TGTGAAATTT ACTCGTGCTT TGTTGCTTTT 240 AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT CTTTTATTCA TGCAAATGAA 55780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTTTAAG CTTATTGTTA TATCTTTCTT TTATTAGTAT CTTTTATTCA TGCAAATGAA 300 ATAATTATAG TATTAGTGTT A 55759 |||||||||| |||||||||| | ATAATTATAG TATTAGTGTT A 321 hqPGS_C09HBa0278J12.1-_SGN-E339873+ (56079 55759) ******************************************************************************** EST sequence 308 +strand 180 n (File: SGN-E308597+) 1 TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG 61 TGTGAAATTT ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT 121 TTATTAGTAT CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT AAAAAAAAAA Predicted gene structure (within gDNA segment 56529 to 55068): Exon 1 55929 55759 ( 171 n); cDNA 1 171 ( 171 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E308597+ 1.000 171 0.950 C PGS_C09HBa0278J12.1-_SGN-E308597+ (55929 55759) Alignment (genomic DNA sequence = upper lines): TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG 55870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGATCAAC GAGAAAAGAG AATTTAGTGA AGGAACTGTT TTATCAGAAA AATATAGCAG 60 TGTGAAATTT ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT 55810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAAATTT ACTCGTGCTT TGTTGCTTTT AAATTTTAAG CTTATTGTTA TATCTTTCTT 120 TTATTAGTAT CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT A 55759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTATTAGTAT CTTTTATTCA TGCAAATGAA ATAATTATAG TATTAGTGTT A 171 hqPGS_C09HBa0278J12.1-_SGN-E308597+ (55929 55759) ******************************************************************************** EST sequence 164 +strand 502 n (File: SGN-E304923+) 1 GTGGATCCCC CGGCTGAGAA TCGCCAGGCT CTAACTTAAC TCTTTGTTTC GCTCACTCGT 61 TTGCTTTTTC ACAGCGTGGA TATGCACGGA TCACAAGGGC ATTTCGGGTA CAAAAGAGTG 121 CCAGGAGCAA CGGATGATGC AAAAAGTGGA GAGGAATCGG TGAAGACTTA TGGGTGCCAG 181 ATCCAGTTAC CGGTTACTAT AGGCCGGAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 241 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 301 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 361 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 421 TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA 481 ATTATAGTAT TAAAAAAAAA AA Predicted gene structure (within gDNA segment 58118 to 55055): Exon 1 56196 55765 ( 432 n); cDNA 74 492 ( 419 n); score: 0.970 PPA cDNA 493 502 MATCH C09HBa0278J12.1- SGN-E304923+ 0.970 432 0.861 C PGS_C09HBa0278J12.1-_SGN-E304923+ (56196 55765) Alignment (genomic DNA sequence = upper lines): GCGTGGATAT GCAGCGGCAT CACAAGGTGC AGTTTCCGGT GTAGCAAAAG GAGTGCCAAG 56137 |||||||||| ||| ||| || ||||||| || | ||| ||| ||| ||||| ||||||| || GCGTGGATAT GCA-CGG-AT CACAAGG-GC A-TTT-CGG- GTA-CAAAA- GAGTGCC-AG 124 GAGCAACGTG ATGATGCAAA AAAGTGGAGA GGAATCGGTG AAGACTTCAT GGGTGCCAGA 56077 |||||||| | |||||||| | |||||||||| |||||||||| ||||||| || |||||||||| GAGCAACG-G ATGATGCA-A AAAGTGGAGA GGAATCGGTG AAGACTT-AT GGGTGCCAGA 181 TCCAGTTACC GGTTACTATA GGCCGGAAGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 56017 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TCCAGTTACC GGTTACTATA GGCCGG-AGG ACAAGCAAAT GAGATTGACG CTGCTGAGCT 240 CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 55957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAAGATG CTGTTGAAAC ACAGATCTGG AAGCAACTGA AAATCTTTGA AGCTGCGCCG 300 TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 55897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCTCCG GTTACTCATC GGAGATTTTC GATCAACGAG AAAAGAGAAT TTAGTGAAGG 360 AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 55837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGTTTTA TCAGAAAAAT ATAGCAGTGT GAAATTTACT CGTGCTTTGT TGCTTTTAAA 420 TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA 55777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAAGCTT ATTGTTATAT CTTTCTTTTA TTAGTATCTT TTATTCATGC AAATGAAATA 480 ATTATAGTAT TA 55765 |||||||||| || ATTATAGTAT TA 492 hqPGS_C09HBa0278J12.1-_SGN-E304923+ (56196 55765) ******************************************************************************** EST sequence 342 +strand 410 n (File: SGN-E236124+) 1 TGCAGTGGCA TCACTAGGTG CAGTTTCCGG TGTATCAAAA GGAGTGCCAA GGAGCAACGT 61 GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC 121 CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT 181 GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTAC 241 GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTATTGAAG GAACTGTTTT 301 ATCAGAAAAA TATAGCAGCG TGAAATTTAC TCGTGCTTTG CTGCTTTTAA ATCTTAAGCT 361 TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CGAATGAAAT Predicted gene structure (within gDNA segment 56922 to 55087): Exon 1 56187 55778 ( 410 n); cDNA 1 410 ( 410 n); score: 0.978 MATCH C09HBa0278J12.1- SGN-E236124+ 0.978 410 1.000 C PGS_C09HBa0278J12.1-_SGN-E236124+ (56187 55778) Alignment (genomic DNA sequence = upper lines): TGCAGCGGCA TCACAAGGTG CAGTTTCCGG TGTAGCAAAA GGAGTGCCAA GGAGCAACGT 56128 ||||| |||| |||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGCAGTGGCA TCACTAGGTG CAGTTTCCGG TGTATCAAAA GGAGTGCCAA GGAGCAACGT 60 GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC 56068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGCAA AAAAGTGGAG AGGAATCGGT GAAGACTTCA TGGGTGCCAG ATCCAGTTAC 120 CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT 56008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTACTAT AGGCCGGAAG GACAAGCAAA TGAGATTGAC GCTGCTGAGC TCCGGAAGAT 180 GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTCC 55948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GCTGTTGAAA CACAGATCTG GAAGCAACTG AAAATCTTTG AAGCTGCGCC GTTGATCTAC 240 GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTAGTGAAG GAACTGTTTT 55888 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GGTTACTCAT CGGAGATTTT CGATCAACGA GAAAAGAGAA TTTATTGAAG GAACTGTTTT 300 ATCAGAAAAA TATAGCAGTG TGAAATTTAC TCGTGCTTTG TTGCTTTTAA ATTTTAAGCT 55828 |||||||||| |||||||| | |||||||||| |||||||||| ||||||||| || ||||||| ATCAGAAAAA TATAGCAGCG TGAAATTTAC TCGTGCTTTG CTGCTTTTAA ATCTTAAGCT 360 TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CAAATGAAAT 55778 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TATTGTTATA TCTTTCTTTT ATTAGTATCT TTTATTCATG CGAATGAAAT 410 hqPGS_C09HBa0278J12.1-_SGN-E236124+ (56187 55778) ******************************************************************************** EST sequence 327 +strand 209 n (File: SGN-E244307+) 1 CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 61 CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 121 TGGCTCGGTC TTTCTCTAAC TCTAAGACTC TCTCTGGTTT CGTCTCCGAC TCCGTTTCTG 181 CTTTTCTCAG CAGGCGTGGA TATGCAGCG Predicted gene structure (within gDNA segment 57447 to 55894): Exon 1 56847 56655 ( 193 n); cDNA 1 193 ( 193 n); score: 0.990 Intron 1 56654 56197 ( 458 n); Pd: 0.981 (s: 0.98), Pa: 1.000 (s: 0) Exon 2 56196 56181 ( 16 n); cDNA 194 209 ( 16 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E244307+ 0.990 209 1.000 C PGS_C09HBa0278J12.1-_SGN-E244307+ (56847 56655,56196 56181) Alignment (genomic DNA sequence = upper lines): CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGCTACA GAATTTCAGT TCGCCGCTGC GGAAGCTCCA TAGCCAAACT CCTTCCGCCG 60 CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCGTTCTT ATTCAGAAAT TCTCTTGCTC CGACTCCGAT CTCGATATCA TAATAAGCAA 120 TGGCTCGTTC TTTCTCTAAC TCTAAGACTC TCTCTGCTTT CGTCTCCGAC TCCGTTTCTG 56668 ||||||| || |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TGGCTCGGTC TTTCTCTAAC TCTAAGACTC TCTCTGGTTT CGTCTCCGAC TCCGTTTCTG 180 CTTTTCTCAG CAGGTAATGA TCATAACGTT CGTAATATGA ATCTAAACAG GAAATATTCA 56608 |||||||||| ||| CTTTTCTCAG CAG....... .......... .......... .......... .......... 193 AATTTTGAAA TCGGTGAACG TGAATGTGTA CCGCTGTTTC CGTTGAGTTT TTCGGTGTAA 56548 .......... .......... .......... .......... .......... .......... 193 ATCTAAAATT TTCTCAGCTA TATTGCATCT GAGTTAAATT CTGTGGTTTT TTCACAGCAT 56488 .......... .......... .......... .......... .......... .......... 193 TATTTTAGAA TTATGCTATG CATAACGATA ACAGGGGATC GAAGTTCTCT GTTTTTCTTA 56428 .......... .......... .......... .......... .......... .......... 193 GCTGGTAATA ACCGAAACAT CCGTTTATCC CCTGGATAAA AGGCGTTAGC ATACAACTTT 56368 .......... .......... .......... .......... .......... .......... 193 TTTAAATCAA CAAGCGTGAT TGTCGCTGCA CATTTTGAAC TTTTTCTTTT ATCAATGTAA 56308 .......... .......... .......... .......... .......... .......... 193 TAGTATATTT TATACGTACT TGGATTTTTT TTGTTCGTAG CAAAAACAGA GGATTGTATC 56248 .......... .......... .......... .......... .......... .......... 193 GGCGGCTAAT TTGCTGTGAT GTGAATGTGA ATTTTTTGTG TGTATGTACA GGCGTGGATA 56188 ||||||||| .......... .......... .......... .......... .......... .GCGTGGATA 202 TGCAGCG 56181 ||||||| TGCAGCG 209 hqPGS_C09HBa0278J12.1-_SGN-E244307+ (56847 56655) ******************************************************************************** EST sequence 277 +strand 166 n (File: SGN-E286063+) 1 TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCGTATT 61 CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG CTCGATCTTT 121 CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GGTTCT Predicted gene structure (within gDNA segment 57434 to 56014): Exon 1 56834 56669 ( 166 n); cDNA 1 166 ( 166 n); score: 0.982 MATCH C09HBa0278J12.1- SGN-E286063+ 0.982 166 1.000 C PGS_C09HBa0278J12.1-_SGN-E286063+ (56834 56669) Alignment (genomic DNA sequence = upper lines): TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCTTATT 56775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTTCAGTTCG CCGCTGCGGA AGCTCCATAG CCAAACTCCT TCCGCCGCAG CGTTCGTATT 60 CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG CTCGTTCTTT 56715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CAGAAATTCT CTTGCTCCGA CTCCGATCTC GATATCATAA TAAGCAATGG CTCGATCTTT 120 CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GTTTCT 56669 |||||||||| |||||||||| |||||||||| |||||||||| | |||| CTCTAACTCT AAGACTCTCT CTGCTTTCGT CTCCGACTCC GGTTCT 166 hqPGS_C09HBa0278J12.1-_SGN-E286063+ (56834 56669) ******************************************************************************** EST sequence 359 +strand 449 n (File: SGN-E245635+) 1 AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 61 AAGCTACATA GGCTACCTTT TCACCATGTT GGTTTATCAG GATCTCCTCA CCGGTGATGA 121 GCTTCTCTCT GACTCATTTC CCTACAAAGA AGTCGAGAAT GGCGTGCTTT GGGAAGTTCA 181 AGGGAAGTGG GTTGTTCAAG GTGCCGTCGA TGTAAACATT GGGGCAAATC CTTCTGCTGA 241 GGGTGGATGT GAAGATGAAG GTGTGGATGA CCAAACTGTC AGGGTTGTCG ATATTGTTGA 301 CACTTTTAGA CTTCAGGAGC AACCTGCTTT TGACAAGAAA CAATTTGTTA CCTTCATGAA 361 GAGATACATC AAGAACCTGA CACCCAAGCT AGAAGGAGAA ACACAAGAAG CATTTAAAAA 421 GAACATTGAA GCAGCAACTA AGTTTCTTT Predicted gene structure (within gDNA segment 57475 to 52361): Exon 1 56875 56798 ( 78 n); cDNA 1 78 ( 78 n); score: 0.949 MATCH C09HBa0278J12.1- SGN-E245635+ 0.949 78 0.174 C PGS_C09HBa0278J12.1-_SGN-E245635+ (56875 56798) Alignment (genomic DNA sequence = upper lines): AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 56816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTAAGT TCGCCGGAGA AAGAGAGTCG AAGCTACAGA ATTTCAGTTC GCCGCTGCGG 60 AAGCTCCATA GCCAAACT 56798 ||||| |||| | | | || AAGCTACATA GGCTACCT 78 hqPGS_C09HBa0278J12.1-_SGN-E245635+ (56875 56798) ******************************************************************************** EST sequence 72 +strand 605 n (File: SGN-E392605+) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGTG GGAATATATA TATATATCTA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATT Predicted gene structure (within gDNA segment 57273 to 63925): Exon 1 62443 62593 ( 151 n); cDNA 312 461 ( 150 n); score: 0.825 Intron 1 62594 62778 ( 185 n); Pd: 0.696 (s: 0.74), Pa: 0.000 (s: 0.82) Exon 2 62779 62842 ( 64 n); cDNA 462 523 ( 62 n); score: 0.844 PPA cDNA 19 1 MATCH C09HBa0278J12.1+ SGN-E392605+ 0.830 215 0.355 C PGS_C09HBa0278J12.1+_SGN-E392605+ (62443 62593,62779 62842) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC TAGGGTTTGA 62502 |||||||||| ||||||||| ||| || ||| || || ||| ||||| |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 370 TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC A-GCGTCTCT CTCCCAAAAA 62561 |||||||||| |||||||||| ||| |||||| ||| |||| | | ||||||| |||||||||| TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 430 TCTCGCTCGC CTCTCTTGCT TTATACACAG AAGTGTATAA TTCTGTTTCT ATTTTGTATA 62621 |||||||||| | ||| | | || | | TCTCGCTCGC CACTC-TCCA TTCTCGCTCG CC........ .......... .......... 461 AAGCGAGAGA AAATTGTATA TACACATGCA AAAATATATA TCTTCGTGTT ATACACTTAA 62681 .......... .......... .......... .......... .......... .......... 461 TTATACAATT TACAAACATT TTACTTCAAA TATTGCAGAG AAAAAGACCA ACAAATTATA 62741 .......... .......... .......... .......... .......... .......... 461 TAATTGCGAA TTATACAATT GCAGTGAAAT ATAATTTTCT CTAGCTTTAT ACAACAGAAG 62801 | | || ||| ||| || ||||||| .......... .......... .......... .......TAT CTCGCTATAT AC-ACAGAAG 483 TGAATATATT GTGTTTCTCT TTTTGTATAA AGCGAGAAAA A 62842 || ||| ||| ||||||| |||||||||| ||||||| || | TGTATAAATT CTGTTTCT-A TTTTGTATAA AGCGAGAGAA A 523 hqPGS_C09HBa0278J12.1+_SGN-E392605+ (62443 62593,62779 62842) ******************************************************************************** EST sequence 10 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 61637 to 69226): Exon 1 62699 62758 ( 60 n); cDNA 84 140 ( 57 n); score: 0.733 Intron 1 62759 62910 ( 152 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.88) Exon 2 62911 62964 ( 54 n); cDNA 141 194 ( 54 n); score: 0.889 Intron 2 62965 62994 ( 30 n); Pd: 0.699 (s: 0.92), Pa: 0.000 (s: 0.72) ?? Exon 3 62995 63107 ( 113 n); cDNA 195 310 ( 116 n); score: 0.752 Intron 3 63108 64182 (1075 n); Pd: 0.000 (s: 0.78), Pa: 0.998 (s: 0) Exon 4 64183 64192 ( 10 n); cDNA 311 319 ( 9 n); score: 0.700 Intron 4 64193 66219 (2027 n); Pd: 0.000 (s: 0), Pa: 0.566 (s: 0) Exon 5 66220 66250 ( 31 n); cDNA 320 350 ( 31 n); score: 0.613 Intron 5 66251 68290 (2040 n); Pd: 0.000 (s: 0), Pa: 0.626 (s: 0) Exon 6 68291 68309 ( 19 n); cDNA 351 368 ( 18 n); score: 0.789 MATCH C09HBa0278J12.1+ SGN-E578389+ 0.780 287 0.409 C PGS_C09HBa0278J12.1+_SGN-E578389+ (62699 62758,62911 62964,62995 63107,64183 64192,66220 66250,68291 68309) Alignment (genomic DNA sequence = upper lines): ATTTTACTTC AAATATTGCA GAGAAAAAGA CCAACAAATT ATATAATTGC GAATTATACA 62758 |||||| | ||||||||| | |||| || || | |||| ||| ||||| | ||| | | ATTTTA-TAA TAATATTGCA GCGAAATAG- GCAGCGAATT ATACAATTG- TAGTTAAATA 140 ATTGCAGTGA AATATAATTT TCTCTAGCTT TATACAACAG AAGTGAATAT ATTGTGTTTC 62818 .......... .......... .......... .......... .......... .......... 140 TCTTTTTGTA TAAAGCGAGA AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA 62878 .......... .......... .......... .......... .......... .......... 140 TATACGTACA TTTTAATTCG ATTCAACTGT ATGCAAAACA AATTGTACAA TTTCAGCGAA 62938 | | | | |||| ||||| || ||||||| .......... .......... .......... ..GGATAGCG AATTATACAA TTGCAGCGAA 168 ATAGGCCAGC GAATTATACA ATTTAGGTCA GCGAATTATA CAATTATATA TGTATAG-C- 62996 |||||||||| |||||||||| |||||| | | ATAGGCCAGC GAATTATACA ATTTAG.... .......... .......... ......GTCA 198 --GAATTATA CAGTTTTATG TTTGCTATGG AGCGCAATTA CGTAAATTTT GCTATAACAT 63054 |||||||| || ||||||| |||||||||| |||||||||| | ||| ||| | |||| ||| GCGAATTATA CAATTTTATG TTTGCTATGG AGCGCAATTA TGCAAACTTT GTTATAGCAT 258 ATAAATATAA TTTTTTTTAT TTTTTATATG TAAAAGTTGC CCATATATAC AACGTGGTGG 63114 | |||||| | |||||| | || ||||||| | |||||||| |||| || || ACAAATATGA -ATTTTTTGT TTGTTATATG TGAAAGTTGC CCATTAATTA AAG....... 310 CACTTAATTG TGTAGCTTAC TATTAACGAA ATGAGACAAT TACGTATTAT AGATCAGGGT 63174 .......... .......... .......... .......... .......... .......... 310 TCGTTTTCCA ATAGAAACAA ATATTTTAAG CTATATGTAG ATCATGTAAA ATAAAGCGTG 63234 .......... .......... .......... .......... .......... .......... 310 GTCAGTTAAA CATATATTCA ATATATAAAT AAGAGTAATG AGCAGATACA AAATTGTATG 63294 .......... .......... .......... .......... .......... .......... 310 AATTTTTCTT TTTAAATGAG TTGTTTTCTA TTTCTTTTCC CTTTATCAAT TGAAGTTATG 63354 .......... .......... .......... .......... .......... .......... 310 TCCTTTAAGA AACTAAAAAT CATGTATATA TATATATACA CTAAGACATG ATATAAAAGT 63414 .......... .......... .......... .......... .......... .......... 310 ATAAATTTTA CCATGAAAAA AAGAATATTT ATTGCCAAAG ACATTAATTA AATATTAACA 63474 .......... .......... .......... .......... .......... .......... 310 AAAACAAGGT CAAAGTAGAA ATGACCTATT CAAATTTTAT TTTTATGCTT ATTATTATTT 63534 .......... .......... .......... .......... .......... .......... 310 CTTTAAAAAT TATTTTCTTT TTCTCCAAAT TACTATTATA TATTTACGAT TTAATTGAAT 63594 .......... .......... .......... .......... .......... .......... 310 TTAAGTTTGT GTTTGAATAT GTGATATACG GTATGATTTC AAGTGAACAT TTGAACATGT 63654 .......... .......... .......... .......... .......... .......... 310 GATTTGAGTT CTTGATCTGA AATTCCAAAT TCAAAAACAA AGAATACATC GTTCAAGATT 63714 .......... .......... .......... .......... .......... .......... 310 ACGAATTTTT AAAATATAAA TATCAAGTCA TGATTTCATT TCGCACGTAT TTATCGCCAT 63774 .......... .......... .......... .......... .......... .......... 310 GTCTAAATGA AGGGATCATT TGTCCAAATA ATTAGAGAAG ATCTAACTGG GCTGATTTTC 63834 .......... .......... .......... .......... .......... .......... 310 CTTTACAAGC CCATTTTCTT ATCCAGCCCA AGCCCAATTA GAACCCCTAC TCGTGCCCAA 63894 .......... .......... .......... .......... .......... .......... 310 AAATTTCTGG AGAAATTAAC GACTACTGAA GTTTCTACCT CACCGGCGAA AGTTGCAGCT 63954 .......... .......... .......... .......... .......... .......... 310 AGGCGTAGAC GAGCAGCCAT GGCGGAGGCG AACCAAAATA CGAACCCGAA TCCGGCCCCT 64014 .......... .......... .......... .......... .......... .......... 310 AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA TGAAAAAATT 64074 .......... .......... .......... .......... .......... .......... 310 AAGCTTGAAG GTACTCCGTA CTTGTCTCGA ATGTTTATGC AGAACATTAT CTTTGTGTTT 64134 .......... .......... .......... .......... .......... .......... 310 CACTGTTTGT AAAATGTGTT GTGTATATTG ATGGTGATTA AATTGTAGAG CTGAAGAAAT 64194 || | || || .......... .......... .......... .......... ........AG -TCAATAA.. 319 CGATGCACGC TGTGTTCTCA CAGTTTGGTA AGATACTGGA GGTTTTAGCA TTCAAAACCC 64254 .......... .......... .......... .......... .......... .......... 319 TAAAGCATAA AGGACAGGCG TGGGTAGTGT TTGATGAAGT TTCTTCTGCT AGCAATGCAC 64314 .......... .......... .......... .......... .......... .......... 319 TTCGCCAGAT GCAGGGTTTT CCTTTCTATG ATAAGCCTAT GGTACTCATT TCCATTGTTT 64374 .......... .......... .......... .......... .......... .......... 319 TTGTATTCTT CACTACTGGA TTCTGGCTTG TTACTGTTGC AATATGCTTA CTGCAATTTC 64434 .......... .......... .......... .......... .......... .......... 319 TACTTCATTG ACACAAAATA TATTCAGCTT TACTATCAAT CCATCAACTG TACCTCTCAA 64494 .......... .......... .......... .......... .......... .......... 319 ACTATCGAGG TTCAGCTATA TGTAGGTTTA TATTGATTGG TTTATCGTAA TTTAGTATTT 64554 .......... .......... .......... .......... .......... .......... 319 TTATGCTGGC TGTGAATCCC CTTAATCTCC ATGCTTCGTC TTTATATGGG CTTGGTACTG 64614 .......... .......... .......... .......... .......... .......... 319 GATATGGTGC CTGAGCATAG GTGGAGCTGA AGAAATTAAG TTTATTTTCC TGAAAAAATT 64674 .......... .......... .......... .......... .......... .......... 319 AATGATCTGT AGGAAAGGTA TCATACCATA TTTGTTCGAT TAGTGATCCT AGAACATATT 64734 .......... .......... .......... .......... .......... .......... 319 AATTGCTCAA GCATTTAGGC ATCTTACCTA TGCTTAATTA GAGAATACTA TTATTCATAG 64794 .......... .......... .......... .......... .......... .......... 319 TCAAACTTAG TGCTCCCACT GGTTGAGTTT ATGTGTCACA ATTTGACTCA AAACTAAGTT 64854 .......... .......... .......... .......... .......... .......... 319 TAAGAAAGAA ATAAAGACTT ATGAAACTTA TAGACTTAAA TATGCAAAAA CATTTGTCAC 64914 .......... .......... .......... .......... .......... .......... 319 TGTAAGACTT CTGAAACTTT TAATCTTAAA CATGTCATAT CAATTTTGTG TCTCTATGAA 64974 .......... .......... .......... .......... .......... .......... 319 GTTGTTATCA AGAGTGAATG GGAGAATTTG TTATCACACT GTCAGTCTTG GGATGTGATG 65034 .......... .......... .......... .......... .......... .......... 319 CATATCAGAA GTAAAGCTGT TAGGACTTAG GAGTAAGGAT GAGTGTTCTT GAGGTCTTCA 65094 .......... .......... .......... .......... .......... .......... 319 AACTAGTAGC CCTATATGGA AAGAAGAACT GAACTGCTTT TGGCATTTTT ATTTAAGCAA 65154 .......... .......... .......... .......... .......... .......... 319 ACTACTAGAT GAGCTTAATT GAAGAGATAT GTTCAATGAT GATTCATATA GTCAATTGCA 65214 .......... .......... .......... .......... .......... .......... 319 ACTTCCTTGG GATTGGATTC TTTTCATAAC CCCAATACAT GTTGTATGCA TTACTAGAAT 65274 .......... .......... .......... .......... .......... .......... 319 AGCATGATAA AAATCAAAGA CTATATCCAA CTTGAAGCAA TCTTGATTGT TCCCTCATTG 65334 .......... .......... .......... .......... .......... .......... 319 CTTCTCAAAG GAGTTGGAGC ATGTTTGTCG TAATCCAGCA AACAACTATA CAAAATTTAT 65394 .......... .......... .......... .......... .......... .......... 319 CAAGCATAGA ATGTTGTCTC AATCCTCAAT ATTTGGGATT GGCTACGCGT GTCCTTTACA 65454 .......... .......... .......... .......... .......... .......... 319 TTTCCGCTTT ATTTAAGTTT CTAATAACTT AAATAATTTG TTTTTGAAGG ATAGTTTGGC 65514 .......... .......... .......... .......... .......... .......... 319 TAAAACTAGA TCTTTTGTAT ATTACAATTA TCCTATACTG ACATACAAAT CTCGACCACA 65574 .......... .......... .......... .......... .......... .......... 319 TCAAGGAACT CCTTATAATC ACCAAACCTA TCATGCTTGT GATTCAAGAT ATTTGATATG 65634 .......... .......... .......... .......... .......... .......... 319 TTAGTGTGAT TGACTGATAA GGGCACATTA GTTAGTTCAT TGGCTAATGA CATGAGGCTA 65694 .......... .......... .......... .......... .......... .......... 319 AGATCCGGCA TGACCAAGTG GCAAGATTAG CGGTTCTTAG TCTCGTTATT TGGAGGTAGA 65754 .......... .......... .......... .......... .......... .......... 319 TGGAGGAGAT ATAGAAACCA TGTTGACTCA TAAGATTCTA TATTTAATAG CACCGGAATA 65814 .......... .......... .......... .......... .......... .......... 319 TTATTATAGT TAGCCTTCTC TCCCATGAAT TCTCCGTCCA ACCAAATTGG ATCTGCCTTT 65874 .......... .......... .......... .......... .......... .......... 319 GCAAGTCTTT CTGCAGTTTC TGCAAAGTGT ATTTAGAACT TATGATGAGA TGGCCTACGG 65934 .......... .......... .......... .......... .......... .......... 319 TAGAAAACTC GATGGGTTAG GACAACCCAT TTTGTGTTAC CAATCCCAGT GGAACTCCCA 65994 .......... .......... .......... .......... .......... .......... 319 TTACTGGTCT ATTAATGGAG GAGTAACATC AGCAACTAAA GCTTATCCCC AATTTGTTGA 66054 .......... .......... .......... .......... .......... .......... 319 GTATTATCTA TAAAGTTGCT TTGTTGTGTT ATATCCTTGC TAAGTCCCAA TTGATTATGT 66114 .......... .......... .......... .......... .......... .......... 319 GAGCTTATAC GTCTTTTCTG AGACAAGTTT TCTCTTTGTA TTTTTAGTCG ACCTCATTCC 66174 .......... .......... .......... .......... .......... .......... 319 TTTTAGCACA TTCTTTCATT GTAGTGTAAT ATCCATGGAC CGTAGGTAAG ATGTCTATAC 66234 || ||||| | .......... .......... .......... .......... .....AATAG CGGTCTAATC 334 AGGACATAAT CAGTCCTCGA TATGCGTTAC TTGCATCCTC AGTCAGATGT CTTCGGTTTT 66294 | | | ||| ||| || AAGTCCTAAG CAGCCC.... .......... .......... .......... .......... 350 GTTCCTCTGT AATATTCATG TATGTATTGG TCCATAGATG GAAGAATGGA GTCAGAATAG 66354 .......... .......... .......... .......... .......... .......... 350 ATAATTGCAG TCATAAGCTG CTCCATTGTT TCTATAAACA ACTGTATCTC CTGGTCTCAG 66414 .......... .......... .......... .......... .......... .......... 350 AGATTGGTTA AGATAATCCT TGTCAAAGAT ATTCTGACCT GGAAATCCAA ATGAGGATAT 66474 .......... .......... .......... .......... .......... .......... 350 TCTGAAATGT ACATGCTGCT TTAGCATTAT GTGAGCTGTG ACTTTGCAAA TTGTACTTCT 66534 .......... .......... .......... .......... .......... .......... 350 TTAGACTTTA GTTTCAATTG TGTAGTAGAT GCATATTTCT CATCTTCACT TGAGTTTAAG 66594 .......... .......... .......... .......... .......... .......... 350 AGTGTTTTCC ATGCTAATTC TGGGTGTCAC CTCATTGCTT GGTGTTTCTT TTTTGAAAAT 66654 .......... .......... .......... .......... .......... .......... 350 TGTTTTGATG AATATGGTTT AGAGTGGTTG CTTTCCATAG GCACCCTAGA AGTGCAAATA 66714 .......... .......... .......... .......... .......... .......... 350 TAAGAGTTGT TGCTTTCCAT AGGCACCCTA GAAGTGCAAA TAGTTGCAGG AGAAAAACTC 66774 .......... .......... .......... .......... .......... .......... 350 AAATGTCCAC AAAGTTGAGT AACTCAGGTG AAGTGTCTAT GTGATGTACA TTCAGGGGCG 66834 .......... .......... .......... .......... .......... .......... 350 GCTCGACGTA ATTGGGAGCC TAAAGAGAAA TTTCAATTGG CGGCCTAAAA TATAAATATA 66894 .......... .......... .......... .......... .......... .......... 350 CTTCATTTAC GTATTTATTT AAAAAAATTA TACTATTAAG ATGAAAATTA TTAGTACTTA 66954 .......... .......... .......... .......... .......... .......... 350 ATATTATTTT TTCAGATACT AGTTTTAAGT AAGGCTCAAC ATTGAAAAAC ATCTTAAGTG 67014 .......... .......... .......... .......... .......... .......... 350 AGATAATTAT TATATGTATT GTTAACACAA TGATACAAGT AATAAGTTGA TAAATATTAA 67074 .......... .......... .......... .......... .......... .......... 350 ATAAAGATAA GAGTTAGAAT CATAGAATTT GACTCTAAAA GTTGATGACT TGGTATAACC 67134 .......... .......... .......... .......... .......... .......... 350 TCATTTTAAA ATGCTTAGAG TAACGCTTGA AACTAAAATT TGAAAAAAAT GAAATAAAAT 67194 .......... .......... .......... .......... .......... .......... 350 TGTAATTCAC TTTGTAACAC TTTTCACTGT TAATTCTCAT TTTTAACAAA GTACAAAAGA 67254 .......... .......... .......... .......... .......... .......... 350 TGTTAAAGTG GATAAAATAA TTTGTTTTTA AATAAATTAT ACTTTTTATC ATAAATAATA 67314 .......... .......... .......... .......... .......... .......... 350 AATTTTTTAT AAAAATTTTA ACACATAATT TATTCTTCAC AAAAAATTTT GGCCCCCGAA 67374 .......... .......... .......... .......... .......... .......... 350 ATTTGGGGCC TAAGGCGAAG GCCTTATTAT TTAATGCATA GAGCAGGCTC TGTGTACATT 67434 .......... .......... .......... .......... .......... .......... 350 AATGACGTTA CACCAAAAAG ACAAAGTACA AACATCTATA TTTAGTTGTT TTTTGTTCTC 67494 .......... .......... .......... .......... .......... .......... 350 TTGCAAAACA TGTTACCACT ATACTTTGTT GTTTTGTCCT CATCAAATAG TTGTTTTCTG 67554 .......... .......... .......... .......... .......... .......... 350 TTCTTGCATG GGGTGCTGCC GTAACTACTG ATGATTCACA TGCAGAATGT TAAAATGTTT 67614 .......... .......... .......... .......... .......... .......... 350 GTTGATATTG TTTTGCATTC TTTGGTTTTC TTACATCATA CATGCTACTC AGTCCATTTC 67674 .......... .......... .......... .......... .......... .......... 350 CTCATTGAGT TAAACAACTG GTTTGAGTGA ATTTTCTCAA TGTTTACTTT TAAATGCAAT 67734 .......... .......... .......... .......... .......... .......... 350 GCTACTCTTT GCATTTACAT ATGAGCATGT TACGGGGTTT AGCGAAGTGC ATATAATGCT 67794 .......... .......... .......... .......... .......... .......... 350 ATACAATGTG ACCACCTATT TGTTTGTGGT TCTTGCATGC GCATGCTATG TTCATCTGTT 67854 .......... .......... .......... .......... .......... .......... 350 TATTACTCAA GCAAAATTAA TGTTGCTTCT AGATGCTTAA TGAGGTTGGG GTTTCGTACC 67914 .......... .......... .......... .......... .......... .......... 350 TGGAGTTGCT TTTTTAGTTC CTGAATTAAC TTCTTTAGTT CAATTATGTC TTAAAATGTC 67974 .......... .......... .......... .......... .......... .......... 350 ATTTTGATTA CCACTGTTAT ATGTTTCTGG TGTACTATAG ATTGGTTACA TAGTTTTTTG 68034 .......... .......... .......... .......... .......... .......... 350 ACACACATAT ATGTATATCA GAGAATACAA TATGCAAAGA CGAAATCTGA TGTTGTAGCA 68094 .......... .......... .......... .......... .......... .......... 350 AAAGCCGATG GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA TAAAGGTAAG 68154 .......... .......... .......... .......... .......... .......... 350 TTCTTTCATT TGAAAATTTT CTAGTTCCAC TATTCGTTTG AATCCCTAGA GAAGGCTGGA 68214 .......... .......... .......... .......... .......... .......... 350 CTATACATCT AAGACATGTC ATTTCATAAA GTTTGCTACA TACTGTTTGC TATAAGCTAC 68274 .......... .......... .......... .......... .......... .......... 350 ATATAATAAT GGGCAGACAA ATTTTACCCG TCAAC 68309 | | ||| ||||| ||||| .......... ......A-AG GTTTGACCCG TCAAC 368 hqPGS_C09HBa0278J12.1+_SGN-E578389+ (62699 62758,62911 62964,62995 63107) ******************************************************************************** EST sequence 36 +strand 680 n (File: SGN-E379427+) 1 ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 61 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 121 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 181 ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 241 AATAAGCAGC GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAGCGAAT 301 TATACAATTG CAGCGAAATA GGCCATCAAA TTATACAATT TAGGCCAGCG AATTATACAA 361 TTGTATATGT ATAGCGAATT ATACAGTTTT ATGTTTGCTA TGGAGCGCAA TTATGCAAAC 421 TTTGTTATAA CATACAAATA TGAATTTTTT ATTTGCTATA CGTGAAAGTT GCCCTTAATT 481 AAATGCTCCA CAGTCTATAC GAATATTTCC ATTCTTACCC GTCTTCACAC CAACTCGGCC 541 CAATTTAGTC ATCGCATTAA CAAATGCGGT TTCAAAAACT TTAGAATTAC TGGCCCACAA 601 ATTAACAGTA CCTTTAGACC TTTGGTCTGT GAACAAAACT TGATCTGATG TGAATAGGCC 661 CATTCCGTTT TGCAAGTTTT Predicted gene structure (within gDNA segment 61366 to 66914): Exon 1 62709 62769 ( 61 n); cDNA 227 286 ( 60 n); score: 0.787 Intron 1 62770 62905 ( 136 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.80) Exon 2 62906 63096 ( 191 n); cDNA 287 474 ( 188 n); score: 0.874 Intron 2 63097 66198 (3102 n); Pd: 0.000 (s: 0.84), Pa: 0.486 (s: 0) Exon 3 66199 66219 ( 21 n); cDNA 475 493 ( 19 n); score: 0.619 MATCH C09HBa0278J12.1+ SGN-E379427+ 0.853 273 0.401 C PGS_C09HBa0278J12.1+_SGN-E379427+ (62709 62769,62906 63096,66199 66219) Alignment (genomic DNA sequence = upper lines): AAATATTGCA GAGAAAAAGA CCAACAAATT ATATAATTGC GAATTATACA ATTGCAGTGA 62768 |||||||||| | |||| | | || | | || ||| |||| | |||| ||| || ||||||| AAATATTGCA GCGAAATA-A GCAGCGATTT ATACGATTGT GCATTACACA ATCGCAGTGA 285 AATATAATTT TCTCTAGCTT TATACAACAG AAGTGAATAT ATTGTGTTTC TCTTTTTGTA 62828 | A......... .......... .......... .......... .......... .......... 286 TAAAGCGAGA AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA TATACGTACA 62888 .......... .......... .......... .......... .......... .......... 286 TTTTAATTCG ATTCAACTGT ATGCAAAACA AATTGTACAA TTTCAGCGAA ATAGGCCAGC 62948 || | | | | | |||| ||||| || ||||||| |||||||| | .......... .......TG- AAG-ATAGCG AATTATACAA TTGCAGCGAA ATAGGCCATC 327 GAATTATACA ATTTAGGTCA GCGAATTATA CAATTATATA TGTATAGCGA ATTATACAGT 63008 ||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| AAATTATACA ATTTAGGCCA GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAGT 387 TTTATGTTTG CTATGGAGCG CAATTACGTA AATTTTGCTA TAACATATAA ATATAATTTT 63068 |||||||||| |||||||||| |||||| | | || |||| || ||||||| || |||| | || TTTATGTTTG CTATGGAGCG CAATTATGCA AACTTTGTTA TAACATACAA ATATGA-ATT 446 TTTTATTTTT TATATGTAAA AGTTGCCCAT ATATACAACG TGGTGGCACT TAATTGTGTA 63128 |||||||| |||| || || |||||||| TTTTATTTGC TATACGTGAA AGTTGCCC.. .......... .......... .......... 474 GCTTACTATT AACGAAATGA GACAATTACG TATTATAGAT CAGGGTTCGT TTTCCAATAG 63188 .......... .......... .......... .......... .......... .......... 474 AAACAAATAT TTTAAGCTAT ATGTAGATCA TGTAAAATAA AGCGTGGTCA GTTAAACATA 63248 .......... .......... .......... .......... .......... .......... 474 TATTCAATAT ATAAATAAGA GTAATGAGCA GATACAAAAT TGTATGAATT TTTCTTTTTA 63308 .......... .......... .......... .......... .......... .......... 474 AATGAGTTGT TTTCTATTTC TTTTCCCTTT ATCAATTGAA GTTATGTCCT TTAAGAAACT 63368 .......... .......... .......... .......... .......... .......... 474 AAAAATCATG TATATATATA TATACACTAA GACATGATAT AAAAGTATAA ATTTTACCAT 63428 .......... .......... .......... .......... .......... .......... 474 GAAAAAAAGA ATATTTATTG CCAAAGACAT TAATTAAATA TTAACAAAAA CAAGGTCAAA 63488 .......... .......... .......... .......... .......... .......... 474 GTAGAAATGA CCTATTCAAA TTTTATTTTT ATGCTTATTA TTATTTCTTT AAAAATTATT 63548 .......... .......... .......... .......... .......... .......... 474 TTCTTTTTCT CCAAATTACT ATTATATATT TACGATTTAA TTGAATTTAA GTTTGTGTTT 63608 .......... .......... .......... .......... .......... .......... 474 GAATATGTGA TATACGGTAT GATTTCAAGT GAACATTTGA ACATGTGATT TGAGTTCTTG 63668 .......... .......... .......... .......... .......... .......... 474 ATCTGAAATT CCAAATTCAA AAACAAAGAA TACATCGTTC AAGATTACGA ATTTTTAAAA 63728 .......... .......... .......... .......... .......... .......... 474 TATAAATATC AAGTCATGAT TTCATTTCGC ACGTATTTAT CGCCATGTCT AAATGAAGGG 63788 .......... .......... .......... .......... .......... .......... 474 ATCATTTGTC CAAATAATTA GAGAAGATCT AACTGGGCTG ATTTTCCTTT ACAAGCCCAT 63848 .......... .......... .......... .......... .......... .......... 474 TTTCTTATCC AGCCCAAGCC CAATTAGAAC CCCTACTCGT GCCCAAAAAT TTCTGGAGAA 63908 .......... .......... .......... .......... .......... .......... 474 ATTAACGACT ACTGAAGTTT CTACCTCACC GGCGAAAGTT GCAGCTAGGC GTAGACGAGC 63968 .......... .......... .......... .......... .......... .......... 474 AGCCATGGCG GAGGCGAACC AAAATACGAA CCCGAATCCG GCCCCTAGCG GCGGCGAAGT 64028 .......... .......... .......... .......... .......... .......... 474 TCCACCAAAT GTGACTATTT ACATCAATAA CCTCAATGAA AAAATTAAGC TTGAAGGTAC 64088 .......... .......... .......... .......... .......... .......... 474 TCCGTACTTG TCTCGAATGT TTATGCAGAA CATTATCTTT GTGTTTCACT GTTTGTAAAA 64148 .......... .......... .......... .......... .......... .......... 474 TGTGTTGTGT ATATTGATGG TGATTAAATT GTAGAGCTGA AGAAATCGAT GCACGCTGTG 64208 .......... .......... .......... .......... .......... .......... 474 TTCTCACAGT TTGGTAAGAT ACTGGAGGTT TTAGCATTCA AAACCCTAAA GCATAAAGGA 64268 .......... .......... .......... .......... .......... .......... 474 CAGGCGTGGG TAGTGTTTGA TGAAGTTTCT TCTGCTAGCA ATGCACTTCG CCAGATGCAG 64328 .......... .......... .......... .......... .......... .......... 474 GGTTTTCCTT TCTATGATAA GCCTATGGTA CTCATTTCCA TTGTTTTTGT ATTCTTCACT 64388 .......... .......... .......... .......... .......... .......... 474 ACTGGATTCT GGCTTGTTAC TGTTGCAATA TGCTTACTGC AATTTCTACT TCATTGACAC 64448 .......... .......... .......... .......... .......... .......... 474 AAAATATATT CAGCTTTACT ATCAATCCAT CAACTGTACC TCTCAAACTA TCGAGGTTCA 64508 .......... .......... .......... .......... .......... .......... 474 GCTATATGTA GGTTTATATT GATTGGTTTA TCGTAATTTA GTATTTTTAT GCTGGCTGTG 64568 .......... .......... .......... .......... .......... .......... 474 AATCCCCTTA ATCTCCATGC TTCGTCTTTA TATGGGCTTG GTACTGGATA TGGTGCCTGA 64628 .......... .......... .......... .......... .......... .......... 474 GCATAGGTGG AGCTGAAGAA ATTAAGTTTA TTTTCCTGAA AAAATTAATG ATCTGTAGGA 64688 .......... .......... .......... .......... .......... .......... 474 AAGGTATCAT ACCATATTTG TTCGATTAGT GATCCTAGAA CATATTAATT GCTCAAGCAT 64748 .......... .......... .......... .......... .......... .......... 474 TTAGGCATCT TACCTATGCT TAATTAGAGA ATACTATTAT TCATAGTCAA ACTTAGTGCT 64808 .......... .......... .......... .......... .......... .......... 474 CCCACTGGTT GAGTTTATGT GTCACAATTT GACTCAAAAC TAAGTTTAAG AAAGAAATAA 64868 .......... .......... .......... .......... .......... .......... 474 AGACTTATGA AACTTATAGA CTTAAATATG CAAAAACATT TGTCACTGTA AGACTTCTGA 64928 .......... .......... .......... .......... .......... .......... 474 AACTTTTAAT CTTAAACATG TCATATCAAT TTTGTGTCTC TATGAAGTTG TTATCAAGAG 64988 .......... .......... .......... .......... .......... .......... 474 TGAATGGGAG AATTTGTTAT CACACTGTCA GTCTTGGGAT GTGATGCATA TCAGAAGTAA 65048 .......... .......... .......... .......... .......... .......... 474 AGCTGTTAGG ACTTAGGAGT AAGGATGAGT GTTCTTGAGG TCTTCAAACT AGTAGCCCTA 65108 .......... .......... .......... .......... .......... .......... 474 TATGGAAAGA AGAACTGAAC TGCTTTTGGC ATTTTTATTT AAGCAAACTA CTAGATGAGC 65168 .......... .......... .......... .......... .......... .......... 474 TTAATTGAAG AGATATGTTC AATGATGATT CATATAGTCA ATTGCAACTT CCTTGGGATT 65228 .......... .......... .......... .......... .......... .......... 474 GGATTCTTTT CATAACCCCA ATACATGTTG TATGCATTAC TAGAATAGCA TGATAAAAAT 65288 .......... .......... .......... .......... .......... .......... 474 CAAAGACTAT ATCCAACTTG AAGCAATCTT GATTGTTCCC TCATTGCTTC TCAAAGGAGT 65348 .......... .......... .......... .......... .......... .......... 474 TGGAGCATGT TTGTCGTAAT CCAGCAAACA ACTATACAAA ATTTATCAAG CATAGAATGT 65408 .......... .......... .......... .......... .......... .......... 474 TGTCTCAATC CTCAATATTT GGGATTGGCT ACGCGTGTCC TTTACATTTC CGCTTTATTT 65468 .......... .......... .......... .......... .......... .......... 474 AAGTTTCTAA TAACTTAAAT AATTTGTTTT TGAAGGATAG TTTGGCTAAA ACTAGATCTT 65528 .......... .......... .......... .......... .......... .......... 474 TTGTATATTA CAATTATCCT ATACTGACAT ACAAATCTCG ACCACATCAA GGAACTCCTT 65588 .......... .......... .......... .......... .......... .......... 474 ATAATCACCA AACCTATCAT GCTTGTGATT CAAGATATTT GATATGTTAG TGTGATTGAC 65648 .......... .......... .......... .......... .......... .......... 474 TGATAAGGGC ACATTAGTTA GTTCATTGGC TAATGACATG AGGCTAAGAT CCGGCATGAC 65708 .......... .......... .......... .......... .......... .......... 474 CAAGTGGCAA GATTAGCGGT TCTTAGTCTC GTTATTTGGA GGTAGATGGA GGAGATATAG 65768 .......... .......... .......... .......... .......... .......... 474 AAACCATGTT GACTCATAAG ATTCTATATT TAATAGCACC GGAATATTAT TATAGTTAGC 65828 .......... .......... .......... .......... .......... .......... 474 CTTCTCTCCC ATGAATTCTC CGTCCAACCA AATTGGATCT GCCTTTGCAA GTCTTTCTGC 65888 .......... .......... .......... .......... .......... .......... 474 AGTTTCTGCA AAGTGTATTT AGAACTTATG ATGAGATGGC CTACGGTAGA AAACTCGATG 65948 .......... .......... .......... .......... .......... .......... 474 GGTTAGGACA ACCCATTTTG TGTTACCAAT CCCAGTGGAA CTCCCATTAC TGGTCTATTA 66008 .......... .......... .......... .......... .......... .......... 474 ATGGAGGAGT AACATCAGCA ACTAAAGCTT ATCCCCAATT TGTTGAGTAT TATCTATAAA 66068 .......... .......... .......... .......... .......... .......... 474 GTTGCTTTGT TGTGTTATAT CCTTGCTAAG TCCCAATTGA TTATGTGAGC TTATACGTCT 66128 .......... .......... .......... .......... .......... .......... 474 TTTCTGAGAC AAGTTTTCTC TTTGTATTTT TAGTCGACCT CATTCCTTTT AGCACATTCT 66188 .......... .......... .......... .......... .......... .......... 474 TTCATTGTAG TGTAATATCC ATGGACCGTA G 66219 | |||| | ||| || | | .......... T-TAAT-TAA ATGCTCCACA G 493 hqPGS_C09HBa0278J12.1+_SGN-E379427+ (62709 62769,62906 63096) ******************************************************************************** EST sequence 371 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 58993 to 64026): Exon 1 62443 62893 ( 451 n); cDNA 139 612 ( 474 n); score: 0.807 MATCH C09HBa0278J12.1+ SGN-E394609- 0.807 451 0.737 C PGS_C09HBa0278J12.1+_SGN-E394609- (62443 62893) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC TAGGGTTTGA 62502 |||||||||| ||||||||| ||| || ||| || || ||| ||||| |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 197 TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC AG-CGTCTCT CTCCCAAAAA 62561 |||||||||| |||||||||| ||| |||||| ||| |||| | || |||||| |||||||||| TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 257 TCTCGCTCG- C-CTCT-C-- T-T-G----- CT-T-T---- --ATACACAG AAGTGTAT-A 62600 ||||||||| | |||| | | | | || | | |||||||| |||||||| | TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 317 ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATATAT 62660 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 377 ATCTTCGTGT TATACACTTA ATTATACAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 62720 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 437 GAAAAAGACC AACAAATTAT ATAATTGCGA ATTATACAAT TGCAGTGAAA TATAATTTTC 62780 ||||||| || ||| |||||| | ||||| || |||||| ||| |||||||||| || ||||||| GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAATTTTC 497 TCTAGCTTTA TACAACAGAA GTGAATATAT TGTGTTTCTC TTTTTGTATA AAGCGAG--A 62838 |||| ||||| |||||||||| ||| |||||| ||||||| | |||||||||| ||||||| | TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA AAGCGAGACA 557 AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA TATACGTACA TTTTA 62893 |||||||||| | ||||||| |||||||||| |||||||||| ||||| |||| ||||| AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA TTTTA 612 hqPGS_C09HBa0278J12.1+_SGN-E394609- (62443 62893) ******************************************************************************** EST sequence 28 +strand 750 n (File: SGN-E379112+) 1 TGTGGGAATA TATATATATA TATATTCCGT TAATTAGACG AAATTGAGAA GCTGAAATCT 61 CACCTATAAC ATCAAGTATA CACGTTACCT ATGCCCTGGT TGTTTATAGC TGAATTTCAA 121 GCCCCTTTTC TTATTCTATT ATTACACCCC TAATGAAATG ATTAAGGAAC TTATTAAAGC 181 AAAACAACTA AATTCTTATT TTGCAATCTT TTCTTGTCAT TCACAAGCGA TAATTCTAAA 241 TCTTTTTCCT TCTCTCCATT TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT 301 AGTAATCTAA CTAAATGGAG TAGCTAGAGT TTGATTTAAT TGTGCTCCAT AGCAAACGTT 361 AGCTAAAGTT TGTCAGGCGT CTCCCTCCCA AAAATCTCGC TCGCCACTCT CCATTCTCGC 421 TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 481 AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 541 CAAATTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA GGCCAACGAA TTATACAATT 601 GTGAATTATA TAATTGCAGT GAAATACAAT TTTCTCTAAC TTTATACAAC AGAAGTGTAT 661 ATATTGTGNT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 721 CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 57633 to 64018): Exon 1 62443 62893 ( 451 n); cDNA 276 750 ( 475 n); score: 0.802 MATCH C09HBa0278J12.1+ SGN-E379112+ 0.802 451 0.601 C PGS_C09HBa0278J12.1+_SGN-E379112+ (62443 62893) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC TAGGGTTTGA 62502 |||||||||| ||||||||| ||| || ||| || || ||| ||||| |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 334 TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC A-GCGTCTCT CTCCCAAAAA 62561 |||||||||| |||||||||| ||| |||||| ||| |||| | | ||||||| |||||||||| TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 394 TCTCGCTCG- C-CTCT-C-- T-T-GCT--- -T-T------ --ATACACAG AAGTGTAT-A 62600 ||||||||| | |||| | | | ||| | | |||||||| |||||||| | TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 454 ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATATAT 62660 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 514 ATCTTCGTGT TATACACTTA ATTATACAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 62720 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 574 GAAAAAGACC AACAAATTAT ATAATTGCGA ATTATACAAT TGCAGTGAAA TATAATTTTC 62780 ||||||| || ||| |||||| | ||||| || |||||| ||| |||||||||| || ||||||| GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAATTTTC 634 TCTAGCTTTA TACAACAGAA GTGAATATAT TGTG-TTTCT CTTTTTGTAT AAAGCGAG-- 62837 |||| ||||| |||||||||| ||| |||||| |||| ||| | ||||||||| |||||||| TCTAACTTTA TACAACAGAA GTGTATATAT TGTGNTTTTT GTTTTTGTAT AAAGCGAGAC 694 AAAAACATAT ATCTTCTTGC TATACACTTA TAATTATGCA ATATACGTAC ATTTTA 62893 |||||||||| || ||||||| ||||||||| |||||||||| |||||| ||| |||||| AAAAACATAT ATATTCTTGC CATACACTTA TAATTATGCA ATATACATAC ATTTTA 750 hqPGS_C09HBa0278J12.1+_SGN-E379112+ (62443 62893) ******************************************************************************** EST sequence 192 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 59403 to 64016): Exon 1 62443 62892 ( 450 n); cDNA 98 570 ( 473 n); score: 0.807 MATCH C09HBa0278J12.1+ SGN-E379618- 0.807 450 0.789 C PGS_C09HBa0278J12.1+_SGN-E379618- (62443 62892) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC TAGGGTTTGA 62502 |||||||||| ||||||||| ||| || ||| || || ||| ||||| |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 156 TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC A-GCGTCTCT CTCCCAAAAA 62561 |||||||||| |||||||||| ||| |||||| ||| |||| | | ||||||| |||||||||| TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 216 TCTCGCTCG- C-CTCT-C-- T-T-G----- C--T-T---- -TATACACAG AAGTGTAT-A 62600 ||||||||| | |||| | | | | | | | ||||||||| |||||||| | TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 276 ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATATAT 62660 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 336 ATCTTCGTGT TATACACTTA ATTATACAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 62720 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 396 GAAAAAGACC AACAAATTAT ATAATTGCGA ATTATACAAT TGCAGTGAAA TATAATTTTC 62780 ||||||| || ||| |||||| | ||||| || |||||| ||| |||||||||| || ||||||| GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAATTTTC 456 TCTAGCTTTA TACAACAGAA GTGAATATAT TGTGTTTCTC TTTTTGTATA AAGCGAG--A 62838 |||| ||||| |||||||||| ||| |||||| ||||||| | |||||||||| ||||||| | TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA AAGCGAGACA 516 AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA TATACGTACA TTTT 62892 |||||||||| | ||||||| |||||||||| |||||||||| ||||| |||| |||| AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA TTTT 570 hqPGS_C09HBa0278J12.1+_SGN-E379618- (62443 62892) ******************************************************************************** EST sequence 113 +strand 651 n (File: SGN-E394141+) 1 TTTTTTTTTT TTTTTTTTTT CTATCAATGT GATACTGGGG GAATATATAT ATATCTTTTT 61 AATGTTAATT AATCGAAATT GAGAAGCTGA AATTTCACCT ATAACATCAA GTATACACGT 121 TACCTATGCC CTGGTTGTTT ATAGCTGAAT TTCAAGCCCC TTTTCTTATT CTATTATTAC 181 ACCCCTAATG AAATGATTAA GGAACTTATT AAAGCAAAAC AACTAAATTC TTATTTTGCA 241 ATCTTTTCTT GTCATTCACA AGCGATAATT CTAAATCTTT TTCCTTCTCT CCATTTTATA 301 CAAGCTCTTG GGAAAATTGT ATATAATAGC AAACTAGTAA TCTAACTAAA TGGAGTAGCT 361 AGAGTTTGAT TTAATTGTGC TCCATAGCAA ACGTTAGCTA AAGTTTGTCA GGCGTCTCCC 421 TCCCAAAAAT CTCGCTCGCC ACTCTCCATT CTCGCTCGCC TATCTCGCTA TATACACAGA 481 AGTGTATAAA TTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 541 AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 601 TATTGCAAAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT G Predicted gene structure (within gDNA segment 57283 to 63768): Exon 1 62443 62762 ( 320 n); cDNA 311 651 ( 341 n); score: 0.766 PPA cDNA 20 1 MATCH C09HBa0278J12.1+ SGN-E394141+ 0.766 320 0.492 C PGS_C09HBa0278J12.1+_SGN-E394141+ (62443 62762) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC TAGGGTTTGA 62502 |||||||||| ||||||||| ||| || ||| || || ||| ||||| |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 369 TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC A-GCGTCTCT CTCCCAAAAA 62561 |||||||||| |||||||||| ||| |||||| ||| |||| | | ||||||| |||||||||| TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 429 TCTCGCTCG- C-CTCT-C-- T-T-GCT--- -T-T------ --ATACACAG AAGTGTAT-A 62600 ||||||||| | |||| | | | ||| | | |||||||| |||||||| | TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 489 ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATATAT 62660 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 549 ATCTTCGTGT TATACACTTA ATTATACAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 62720 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAAA 609 GAAAAAGACC AACAAATTAT ATAATTGCGA ATTATACAAT TG 62762 ||||||| || ||| |||||| | ||||| || |||||| ||| || GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TG 651 hqPGS_C09HBa0278J12.1+_SGN-E394141+ (62443 62762) ******************************************************************************** EST sequence 447 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 60603 to 64016): Exon 1 62562 62892 ( 331 n); cDNA 117 450 ( 334 n); score: 0.923 MATCH C09HBa0278J12.1+ SGN-E200845- 0.923 331 0.736 C PGS_C09HBa0278J12.1+_SGN-E200845- (62562 62892) Alignment (genomic DNA sequence = upper lines): TCTCGCTCGC CTCTCTTGCT TTATACACAG AAGTGTAT-A ATTCTGTTTC TATTTTGTAT 62620 |||||||||| || ||| ||| ||||||||| |||||||| | |||||||||| |||||||||| TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA ATTCTGTTTC TATTTTGTAT 176 AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATATAT ATCTTCGTGT TATACACTTA 62680 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA 236 ATTATACAAT TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGACC AACAAATTAT 62740 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||| |||||| ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT 296 ATAATTGCGA ATTATACAAT TGCAGTGAAA TATAATTTTC TCTAGCTTTA TACAACAGAA 62800 | ||||| || |||||| ||| |||||||||| || ||||||| |||| ||||| |||||||||| ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA 356 GTGAATATAT TGTGTTTCTC TTTTTGTATA AAGCGAG--A AAAACATATA TCTTCTTGCT 62858 ||| |||||| ||||||| | |||||||||| ||||||| | |||||||||| | ||||||| GTGTATATAT TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC 416 ATACACTTAT AATTATGCAA TATACGTACA TTTT 62892 |||||||||| |||||||||| ||||| |||| |||| ATACACTTAT AATTATGCAA TATACATACA TTTT 450 hqPGS_C09HBa0278J12.1+_SGN-E200845- (62562 62892) ******************************************************************************** EST sequence 316 -strand 530 n (File: SGN-E393065-) 1 TTCACAAGCG ATAATTCTAA ATCTTTTTCC TTCTCTCCAT TTTATACAAG CTATGGGACA 61 AATTGTATAT AATAGCAAAC TAGTAATCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 121 TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 181 CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 241 GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 301 CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 361 AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 421 CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 481 ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 59813 to 65124): Exon 1 60513 60527 ( 15 n); cDNA 183 197 ( 15 n); score: 0.733 Intron 1 60528 62563 (2036 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.79) Exon 2 62564 62893 ( 330 n); cDNA 198 530 ( 333 n); score: 0.880 MATCH C09HBa0278J12.1+ SGN-E393065- 0.880 345 0.651 C PGS_C09HBa0278J12.1+_SGN-E393065- (60513 60527,62564 62893) Alignment (genomic DNA sequence = upper lines): GGCCAGTCTA CATTTGTATA TATGACATGC AAGATTGGGA GAGAGAGAAG AGCGAGATTG 60572 ||||| | | |||| GGCCATTTTC CATTA..... .......... .......... .......... .......... 197 AGAGAGAGGA GAGAGGAGAG CGAGATTGGG AGAGGACAGA GAGTGGGAGA GAGGTAAATT 60632 .......... .......... .......... .......... .......... .......... 197 ATATATGTAT GTCAGTTAAA TAATTATATA TTTTGGCGAA TTATACATAT ACAAACGTGA 60692 .......... .......... .......... .......... .......... .......... 197 CTATTATATA AACTCGAAGT CGTCCCATGT AATTAGTGTA TAATATTAGT TGCATATGTT 60752 .......... .......... .......... .......... .......... .......... 197 AATTATAACA AACTATATTT ATGATAAATA ATTAAATAGT ACAAATTTAC TTAATCACGT 60812 .......... .......... .......... .......... .......... .......... 197 AATTTTTTGA ATATAACCCT ATGTAATTTC ATATTTGTCC AAATCATACT TGACAGAGTT 60872 .......... .......... .......... .......... .......... .......... 197 AGCACTTAAC AAATATGATT TTTATTTTTG TCCAAATCAT ATTTATTTGA ATATAAGCCC 60932 .......... .......... .......... .......... .......... .......... 197 ATATATTTTT ATATTATGTT TTTTTTAATG TTCCCTCTCA GTATCTTGTT ATAGAATAAG 60992 .......... .......... .......... .......... .......... .......... 197 AATAAATAGT GGGAGTTGTT ATCAACACAA TTAAAGCCCT ATTTTTGAAC ACACAAATAT 61052 .......... .......... .......... .......... .......... .......... 197 TTTTGTGGAG CCAAAAAGCT GTGGCAAAGG CAGATTCCTA TTATTACATT AATTATTCAG 61112 .......... .......... .......... .......... .......... .......... 197 TGATCAATAT TAATTCCACA CACACAAAAT AAAAATCCTA GCTTTAATTT GCCTCTTTTA 61172 .......... .......... .......... .......... .......... .......... 197 CACTACCAAA AGACAACATT ATTTTTTCTG GAAAAAAAAA CAATTTGCTC TCCCTATCAT 61232 .......... .......... .......... .......... .......... .......... 197 ATATTAATTT CAGGCTCACA GAATATACAT ATTTTTTTGT GTATGCTATT CTTATACCTA 61292 .......... .......... .......... .......... .......... .......... 197 ATTTGTGGAG CAAAACCAAA ATACCACAAG GAATCAAAAA AAGAAAAAAA AAATCTTATT 61352 .......... .......... .......... .......... .......... .......... 197 ATGTAACATA GCGGTGTCAA ATACACCATT CAAATTGTTT GATTAAGCTT ATAAATTAAT 61412 .......... .......... .......... .......... .......... .......... 197 TGAACTGATT AATAAATCGT ATTTAACTTA TTTACAAATT TGATATAAAC TTTAACCGCG 61472 .......... .......... .......... .......... .......... .......... 197 AAAAGGGTAA AAAATAATAA TTTAAGCCAC TTGTGTCTTA TTTGATGATA ATCCCACATT 61532 .......... .......... .......... .......... .......... .......... 197 AATTTGACAC TTGACTTGGT CTAATGATCT TATCCATAAA CTTTTAATTT AGTAATGATC 61592 .......... .......... .......... .......... .......... .......... 197 ACATCACAAG AATGATTAAT TATACGTGTT GATAAAAGAT AGGTTTTATT TCTTAAAGTA 61652 .......... .......... .......... .......... .......... .......... 197 ATTTATTTTT CTTTTGAACT TATCTTTAGT TTACCATTCA CTTATTAGTT ATTCCCTCCA 61712 .......... .......... .......... .......... .......... .......... 197 TTTAAAAAAT GATAACCTGA TTCGATTTGG AATAAAGTCT GAATTTTTTT TTTTAATTTT 61772 .......... .......... .......... .......... .......... .......... 197 ATGATTCGAA AATAAAATTA TGTCAAATGT ATCAAAATGA TCTTGATTTT GTGGTTTTAA 61832 .......... .......... .......... .......... .......... .......... 197 ATATGTCACG TGGAAAATTA AAGTTAAAGT GTTGTCAAAA ACGAAAAAGG GTCATTCTTT 61892 .......... .......... .......... .......... .......... .......... 197 TTTAAACAAA TTAAAAATAA AATAAAAACA TTCTTTTTGA AACGGAGAAA ATATCACTAT 61952 .......... .......... .......... .......... .......... .......... 197 GCAGGAGCCA CAAATTTTAA TTTATGATTT TTGAATCGAT AGTCTATATT GAGTTTTCTA 62012 .......... .......... .......... .......... .......... .......... 197 TTAAGTGACT ATCAATTTTA TTAGATCGTA CTATTCATAA TGTTTTCCTT TTATTAGTTC 62072 .......... .......... .......... .......... .......... .......... 197 AGCAAACAAA ATATTTATAA AATTATTTTA TGACTCGTCC TAGAAAATCG AGTCGATAAT 62132 .......... .......... .......... .......... .......... .......... 197 ACTTTAATTT CAACTAGACA AAAATTCAAA CATCAACAAA TTAAATTGAT TATAATTCAA 62192 .......... .......... .......... .......... .......... .......... 197 AATTTAATCA ATTTAGCTAT TAAAATTCTT TCGAATAATA ATATTTATTT TTCCAGTTGA 62252 .......... .......... .......... .......... .......... .......... 197 TACCATCTCC CAATTATTGA GAGAGATGTG AATGAGATTG ATTAGTTGAT AGCTTTAATT 62312 .......... .......... .......... .......... .......... .......... 197 TGATCTTACT TGCGATTCAC AAAATATTCT AATGTGCCCA ATTCTGTTTA TGTCCACTCG 62372 .......... .......... .......... .......... .......... .......... 197 AAACTTGTGA TGTGTTACTT TTCCAGAGAA TTCAATTTAT TTTTTTAATT TAGTGTATAA 62432 .......... .......... .......... .......... .......... .......... 197 TATATACGAG GGAAAATTGT ATATAATAGT AAATTAATAA CCTAAAATAA ATGGAATAGC 62492 .......... .......... .......... .......... .......... .......... 197 TAGGGTTTGA TTTAATTGTG CTCCATAGCA AACCTTAGCT AAAATTTGCC AGCGTCTCTC 62552 .......... .......... .......... .......... .......... .......... 197 TCCCAAAAAT CTCGCTCGCC TCTCTTGCTT TATACACAGA AGTGTATA-A TTCTGTTTCT 62611 ||||| || | ||| | | |||||||||| |||||||| | || ||||| | .......... .TCGCTGGCA TATCTCGTTA TATACACAGA AGTGTATAGA TTATGTTTAT 246 ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGCA AAAATATATA TCTTCGTGTT 62671 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTG AAAATATATA TCTTCGTGTT 306 ATACACTTAA TTATACAATT TACAAACATT TTACTTCAAA TATTGCAGAG AAAAAGACCA 62731 |||||||||| |||||||| | |||||||||| |||||||||| ||| |||| | |||||| ||| ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA TATGGCAGTG AAAAAGGCCA 366 ACAAATTATA TAATTGCGAA TTATACAATT GCAGTGAAAT ATAATTTTCT CTAGCTTTAT 62791 | |||||| ||||| ||| ||||| |||| |||||||||| | |||||| | ||| |||||| AGGAATTATG CAATTGTGAA TTATATAATT GCAGTGAAAT ACAATTTTGT CTAACTTTAT 426 ACAACAGAAG TGAATATATT GTGTTTCTCT TTTTGTATAA AGCGAG--AA AAACATATAT 62849 |||||||||| || ||||||| |||||| | | ||| |||||| |||||| || |||||||||| ACAACAGAAG TGTATATATT GTGTTTTTGT TTTAGTATAA AGCGAGACAA AAACATATAT 486 CTTCTTGCTA TACACTTATA ATTATGCAAT ATACGTACAT TTTA 62893 ||||||| | | | |||||| |||||||||| |||| ||||| |||| ATTCTTGCCA TGCGCTTATA ATTATGCAAT ATACATACAT TTTA 530 hqPGS_C09HBa0278J12.1+_SGN-E393065- (62564 62893) ******************************************************************************** EST sequence 321 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 61601 to 64026): Exon 1 62572 62893 ( 322 n); cDNA 1 325 ( 325 n); score: 0.902 MATCH C09HBa0278J12.1+ SGN-E393076- 0.902 322 0.991 C PGS_C09HBa0278J12.1+_SGN-E393076- (62572 62893) Alignment (genomic DNA sequence = upper lines): CTCTCTTGCT TTATACACAG AAGTGTAT-A ATTCTGTTTC TATTTTGTAT AAAGCGAGAG 62630 || ||| ||| |||||||| || || | ||||||||| |||||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATACACATGC AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAT 62690 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGACC AACAAATTAT ATAATTGCGA 62750 |||||||||| |||||||||| |||||||||| ||||||| || ||| |||||| | ||||| || TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 180 ATTATACAAT TGCAGTGAAA TATAATTTTC TCTAGCTTTA TACAACAGAA GTGAATATAT 62810 |||||| ||| |||||||||| || ||||||| |||| ||||| |||||||||| ||| |||||| ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 240 TGTGTTTCTC TTTTTGTATA AAGCGAG--A AAAACATATA TCTTCTTGCT ATACACTTAT 62868 ||||||| | |||||||||| ||||||| | |||||||||| | ||||||| |||||||||| TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 300 AATTATGCAA TATACGTACA TTTTA 62893 |||||||||| ||||| |||| ||||| AATTATGCAA TATACATACA TTTTA 325 hqPGS_C09HBa0278J12.1+_SGN-E393076- (62572 62893) ******************************************************************************** EST sequence 319 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 61843 to 64026): Exon 1 62603 62893 ( 291 n); cDNA 16 308 ( 293 n); score: 0.931 MATCH C09HBa0278J12.1+ SGN-E393075- 0.931 291 0.945 C PGS_C09HBa0278J12.1+_SGN-E393075- (62603 62893) Alignment (genomic DNA sequence = upper lines): TCTGTTTCTA TTTTGTATAA AGCGAGAGAA AATTGTATAT ACACATGCAA AAATATATAT 62662 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TCTGTTTCTA TTTTGTATAA AGCGAGAGAA AATTGTATAT ACACATGTAA AAATATATAT 75 CTTCGTGTTA TACACTTAAT TATACAATTT ACAAACATTT TACTTCAAAT ATTGCAGAGA 62722 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CTTCGTGTTA TACACTTAAT TATACAAATT ACAAACATTT TACTTCAAAT ATTGCAGAGA 135 AAAAGACCAA CAAATTATAT AATTGCGAAT TATACAATTG CAGTGAAATA TAATTTTCTC 62782 ||||| |||| | ||||||| ||||| |||| |||| ||||| |||||||||| ||||||||| AAAAGGCCAA CGAATTATAC AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC 195 TAGCTTTATA CAACAGAAGT GAATATATTG TGTTTCTCTT TTTGTATAAA GCGAG--AAA 62840 || ||||||| |||||||||| | |||||||| ||||| | || |||||||||| ||||| ||| TAACTTTATA CAACAGAAGT GTATATATTG TGTTTTTGTT TTTGTATAAA GCGAGACAAA 255 AACATATATC TTCTTGCTAT ACACTTATAA TTATGCAATA TACGTACATT TTA 62893 ||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| ||| AACATATATA TTCTTGCCAT ACACTTATAA TTATGCAATA TACATACATT TTA 308 hqPGS_C09HBa0278J12.1+_SGN-E393075- (62603 62893) ******************************************************************************** EST sequence 149 +strand 478 n (File: SGN-E209693+) 1 TCGTGCCCAG AAATTTCTGG AGAAATTAAC GACTACTGAA GTTTCTACCT CACCGGCGAA 61 AGTTGCAGCT AGGCGTTGAC GATCAGCCAT GGCGGAGGCG AACCATGATA CGAACCCGAA 121 TCCGGCCCCT AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA 181 TGAAAAAATT AAGCTTGAAG AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG 241 TAAGATACTG GAGGTTTTAG CATTCAAAAC CCTAAAGCAT AAAGGACAGG CGTGGGTAGT 301 GTTTGATGAA GTTTCTTCTG CTAGCAATGC ACTTCGCCAG ATGCAAGGTT TTGCTTTCTA 361 TGATAAGCCT ATGAGAATAC AATATGCAAA GACGAAATCT GATGTTGTAG CAAAAGCCGA 421 TGGTACTTTT GTTCCCCGAG AAAAAAGAAA GAGGCACGAG GATAAAGGGA GAAAGAAG Predicted gene structure (within gDNA segment 63195 to 68860): Exon 1 63885 64084 ( 200 n); cDNA 1 200 ( 200 n); score: 0.975 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 201 373 ( 173 n); score: 0.988 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 0.96), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 374 467 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 4 68460 68470 ( 11 n); cDNA 468 478 ( 11 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E209693+ 0.985 478 1.000 C PGS_C09HBa0278J12.1+_SGN-E209693+ (63885 64084,64183 64355,68056 68149,68460 68470) Alignment (genomic DNA sequence = upper lines): TCGTGCCCAA AAATTTCTGG AGAAATTAAC GACTACTGAA GTTTCTACCT CACCGGCGAA 63944 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGCCCAG AAATTTCTGG AGAAATTAAC GACTACTGAA GTTTCTACCT CACCGGCGAA 60 AGTTGCAGCT AGGCGTAGAC GAGCAGCCAT GGCGGAGGCG AACCAAAATA CGAACCCGAA 64004 |||||||||| |||||| ||| || ||||||| |||||||||| ||||| ||| |||||||||| AGTTGCAGCT AGGCGTTGAC GATCAGCCAT GGCGGAGGCG AACCATGATA CGAACCCGAA 120 TCCGGCCCCT AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA 64064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGCCCCT AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA 180 TGAAAAAATT AAGCTTGAAG GTACTCCGTA CTTGTCTCGA ATGTTTATGC AGAACATTAT 64124 |||||||||| |||||||||| TGAAAAAATT AAGCTTGAAG .......... .......... .......... .......... 200 CTTTGTGTTT CACTGTTTGT AAAATGTGTT GTGTATATTG ATGGTGATTA AATTGTAGAG 64184 || .......... .......... .......... .......... .......... ........AG 202 CTGAAGAAAT CGATGCACGC TGTGTTCTCA CAGTTTGGTA AGATACTGGA GGTTTTAGCA 64244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGAAAT CGATGCACGC TGTGTTCTCA CAGTTTGGTA AGATACTGGA GGTTTTAGCA 262 TTCAAAACCC TAAAGCATAA AGGACAGGCG TGGGTAGTGT TTGATGAAGT TTCTTCTGCT 64304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAACCC TAAAGCATAA AGGACAGGCG TGGGTAGTGT TTGATGAAGT TTCTTCTGCT 322 AGCAATGCAC TTCGCCAGAT GCAGGGTTTT CCTTTCTATG ATAAGCCTAT GGTACTCATT 64364 |||||||||| |||||||||| ||| |||||| ||||||||| |||||||||| | AGCAATGCAC TTCGCCAGAT GCAAGGTTTT GCTTTCTATG ATAAGCCTAT G......... 373 TCCATTGTTT TTGTATTCTT CACTACTGGA TTCTGGCTTG TTACTGTTGC AATATGCTTA 64424 .......... .......... .......... .......... .......... .......... 373 CTGCAATTTC TACTTCATTG ACACAAAATA TATTCAGCTT TACTATCAAT CCATCAACTG 64484 .......... .......... .......... .......... .......... .......... 373 TACCTCTCAA ACTATCGAGG TTCAGCTATA TGTAGGTTTA TATTGATTGG TTTATCGTAA 64544 .......... .......... .......... .......... .......... .......... 373 TTTAGTATTT TTATGCTGGC TGTGAATCCC CTTAATCTCC ATGCTTCGTC TTTATATGGG 64604 .......... .......... .......... .......... .......... .......... 373 CTTGGTACTG GATATGGTGC CTGAGCATAG GTGGAGCTGA AGAAATTAAG TTTATTTTCC 64664 .......... .......... .......... .......... .......... .......... 373 TGAAAAAATT AATGATCTGT AGGAAAGGTA TCATACCATA TTTGTTCGAT TAGTGATCCT 64724 .......... .......... .......... .......... .......... .......... 373 AGAACATATT AATTGCTCAA GCATTTAGGC ATCTTACCTA TGCTTAATTA GAGAATACTA 64784 .......... .......... .......... .......... .......... .......... 373 TTATTCATAG TCAAACTTAG TGCTCCCACT GGTTGAGTTT ATGTGTCACA ATTTGACTCA 64844 .......... .......... .......... .......... .......... .......... 373 AAACTAAGTT TAAGAAAGAA ATAAAGACTT ATGAAACTTA TAGACTTAAA TATGCAAAAA 64904 .......... .......... .......... .......... .......... .......... 373 CATTTGTCAC TGTAAGACTT CTGAAACTTT TAATCTTAAA CATGTCATAT CAATTTTGTG 64964 .......... .......... .......... .......... .......... .......... 373 TCTCTATGAA GTTGTTATCA AGAGTGAATG GGAGAATTTG TTATCACACT GTCAGTCTTG 65024 .......... .......... .......... .......... .......... .......... 373 GGATGTGATG CATATCAGAA GTAAAGCTGT TAGGACTTAG GAGTAAGGAT GAGTGTTCTT 65084 .......... .......... .......... .......... .......... .......... 373 GAGGTCTTCA AACTAGTAGC CCTATATGGA AAGAAGAACT GAACTGCTTT TGGCATTTTT 65144 .......... .......... .......... .......... .......... .......... 373 ATTTAAGCAA ACTACTAGAT GAGCTTAATT GAAGAGATAT GTTCAATGAT GATTCATATA 65204 .......... .......... .......... .......... .......... .......... 373 GTCAATTGCA ACTTCCTTGG GATTGGATTC TTTTCATAAC CCCAATACAT GTTGTATGCA 65264 .......... .......... .......... .......... .......... .......... 373 TTACTAGAAT AGCATGATAA AAATCAAAGA CTATATCCAA CTTGAAGCAA TCTTGATTGT 65324 .......... .......... .......... .......... .......... .......... 373 TCCCTCATTG CTTCTCAAAG GAGTTGGAGC ATGTTTGTCG TAATCCAGCA AACAACTATA 65384 .......... .......... .......... .......... .......... .......... 373 CAAAATTTAT CAAGCATAGA ATGTTGTCTC AATCCTCAAT ATTTGGGATT GGCTACGCGT 65444 .......... .......... .......... .......... .......... .......... 373 GTCCTTTACA TTTCCGCTTT ATTTAAGTTT CTAATAACTT AAATAATTTG TTTTTGAAGG 65504 .......... .......... .......... .......... .......... .......... 373 ATAGTTTGGC TAAAACTAGA TCTTTTGTAT ATTACAATTA TCCTATACTG ACATACAAAT 65564 .......... .......... .......... .......... .......... .......... 373 CTCGACCACA TCAAGGAACT CCTTATAATC ACCAAACCTA TCATGCTTGT GATTCAAGAT 65624 .......... .......... .......... .......... .......... .......... 373 ATTTGATATG TTAGTGTGAT TGACTGATAA GGGCACATTA GTTAGTTCAT TGGCTAATGA 65684 .......... .......... .......... .......... .......... .......... 373 CATGAGGCTA AGATCCGGCA TGACCAAGTG GCAAGATTAG CGGTTCTTAG TCTCGTTATT 65744 .......... .......... .......... .......... .......... .......... 373 TGGAGGTAGA TGGAGGAGAT ATAGAAACCA TGTTGACTCA TAAGATTCTA TATTTAATAG 65804 .......... .......... .......... .......... .......... .......... 373 CACCGGAATA TTATTATAGT TAGCCTTCTC TCCCATGAAT TCTCCGTCCA ACCAAATTGG 65864 .......... .......... .......... .......... .......... .......... 373 ATCTGCCTTT GCAAGTCTTT CTGCAGTTTC TGCAAAGTGT ATTTAGAACT TATGATGAGA 65924 .......... .......... .......... .......... .......... .......... 373 TGGCCTACGG TAGAAAACTC GATGGGTTAG GACAACCCAT TTTGTGTTAC CAATCCCAGT 65984 .......... .......... .......... .......... .......... .......... 373 GGAACTCCCA TTACTGGTCT ATTAATGGAG GAGTAACATC AGCAACTAAA GCTTATCCCC 66044 .......... .......... .......... .......... .......... .......... 373 AATTTGTTGA GTATTATCTA TAAAGTTGCT TTGTTGTGTT ATATCCTTGC TAAGTCCCAA 66104 .......... .......... .......... .......... .......... .......... 373 TTGATTATGT GAGCTTATAC GTCTTTTCTG AGACAAGTTT TCTCTTTGTA TTTTTAGTCG 66164 .......... .......... .......... .......... .......... .......... 373 ACCTCATTCC TTTTAGCACA TTCTTTCATT GTAGTGTAAT ATCCATGGAC CGTAGGTAAG 66224 .......... .......... .......... .......... .......... .......... 373 ATGTCTATAC AGGACATAAT CAGTCCTCGA TATGCGTTAC TTGCATCCTC AGTCAGATGT 66284 .......... .......... .......... .......... .......... .......... 373 CTTCGGTTTT GTTCCTCTGT AATATTCATG TATGTATTGG TCCATAGATG GAAGAATGGA 66344 .......... .......... .......... .......... .......... .......... 373 GTCAGAATAG ATAATTGCAG TCATAAGCTG CTCCATTGTT TCTATAAACA ACTGTATCTC 66404 .......... .......... .......... .......... .......... .......... 373 CTGGTCTCAG AGATTGGTTA AGATAATCCT TGTCAAAGAT ATTCTGACCT GGAAATCCAA 66464 .......... .......... .......... .......... .......... .......... 373 ATGAGGATAT TCTGAAATGT ACATGCTGCT TTAGCATTAT GTGAGCTGTG ACTTTGCAAA 66524 .......... .......... .......... .......... .......... .......... 373 TTGTACTTCT TTAGACTTTA GTTTCAATTG TGTAGTAGAT GCATATTTCT CATCTTCACT 66584 .......... .......... .......... .......... .......... .......... 373 TGAGTTTAAG AGTGTTTTCC ATGCTAATTC TGGGTGTCAC CTCATTGCTT GGTGTTTCTT 66644 .......... .......... .......... .......... .......... .......... 373 TTTTGAAAAT TGTTTTGATG AATATGGTTT AGAGTGGTTG CTTTCCATAG GCACCCTAGA 66704 .......... .......... .......... .......... .......... .......... 373 AGTGCAAATA TAAGAGTTGT TGCTTTCCAT AGGCACCCTA GAAGTGCAAA TAGTTGCAGG 66764 .......... .......... .......... .......... .......... .......... 373 AGAAAAACTC AAATGTCCAC AAAGTTGAGT AACTCAGGTG AAGTGTCTAT GTGATGTACA 66824 .......... .......... .......... .......... .......... .......... 373 TTCAGGGGCG GCTCGACGTA ATTGGGAGCC TAAAGAGAAA TTTCAATTGG CGGCCTAAAA 66884 .......... .......... .......... .......... .......... .......... 373 TATAAATATA CTTCATTTAC GTATTTATTT AAAAAAATTA TACTATTAAG ATGAAAATTA 66944 .......... .......... .......... .......... .......... .......... 373 TTAGTACTTA ATATTATTTT TTCAGATACT AGTTTTAAGT AAGGCTCAAC ATTGAAAAAC 67004 .......... .......... .......... .......... .......... .......... 373 ATCTTAAGTG AGATAATTAT TATATGTATT GTTAACACAA TGATACAAGT AATAAGTTGA 67064 .......... .......... .......... .......... .......... .......... 373 TAAATATTAA ATAAAGATAA GAGTTAGAAT CATAGAATTT GACTCTAAAA GTTGATGACT 67124 .......... .......... .......... .......... .......... .......... 373 TGGTATAACC TCATTTTAAA ATGCTTAGAG TAACGCTTGA AACTAAAATT TGAAAAAAAT 67184 .......... .......... .......... .......... .......... .......... 373 GAAATAAAAT TGTAATTCAC TTTGTAACAC TTTTCACTGT TAATTCTCAT TTTTAACAAA 67244 .......... .......... .......... .......... .......... .......... 373 GTACAAAAGA TGTTAAAGTG GATAAAATAA TTTGTTTTTA AATAAATTAT ACTTTTTATC 67304 .......... .......... .......... .......... .......... .......... 373 ATAAATAATA AATTTTTTAT AAAAATTTTA ACACATAATT TATTCTTCAC AAAAAATTTT 67364 .......... .......... .......... .......... .......... .......... 373 GGCCCCCGAA ATTTGGGGCC TAAGGCGAAG GCCTTATTAT TTAATGCATA GAGCAGGCTC 67424 .......... .......... .......... .......... .......... .......... 373 TGTGTACATT AATGACGTTA CACCAAAAAG ACAAAGTACA AACATCTATA TTTAGTTGTT 67484 .......... .......... .......... .......... .......... .......... 373 TTTTGTTCTC TTGCAAAACA TGTTACCACT ATACTTTGTT GTTTTGTCCT CATCAAATAG 67544 .......... .......... .......... .......... .......... .......... 373 TTGTTTTCTG TTCTTGCATG GGGTGCTGCC GTAACTACTG ATGATTCACA TGCAGAATGT 67604 .......... .......... .......... .......... .......... .......... 373 TAAAATGTTT GTTGATATTG TTTTGCATTC TTTGGTTTTC TTACATCATA CATGCTACTC 67664 .......... .......... .......... .......... .......... .......... 373 AGTCCATTTC CTCATTGAGT TAAACAACTG GTTTGAGTGA ATTTTCTCAA TGTTTACTTT 67724 .......... .......... .......... .......... .......... .......... 373 TAAATGCAAT GCTACTCTTT GCATTTACAT ATGAGCATGT TACGGGGTTT AGCGAAGTGC 67784 .......... .......... .......... .......... .......... .......... 373 ATATAATGCT ATACAATGTG ACCACCTATT TGTTTGTGGT TCTTGCATGC GCATGCTATG 67844 .......... .......... .......... .......... .......... .......... 373 TTCATCTGTT TATTACTCAA GCAAAATTAA TGTTGCTTCT AGATGCTTAA TGAGGTTGGG 67904 .......... .......... .......... .......... .......... .......... 373 GTTTCGTACC TGGAGTTGCT TTTTTAGTTC CTGAATTAAC TTCTTTAGTT CAATTATGTC 67964 .......... .......... .......... .......... .......... .......... 373 TTAAAATGTC ATTTTGATTA CCACTGTTAT ATGTTTCTGG TGTACTATAG ATTGGTTACA 68024 .......... .......... .......... .......... .......... .......... 373 TAGTTTTTTG ACACACATAT ATGTATATCA GAGAATACAA TATGCAAAGA CGAAATCTGA 68084 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGAATACAA TATGCAAAGA CGAAATCTGA 402 TGTTGTAGCA AAAGCCGATG GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA 68144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTAGCA AAAGCCGATG GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA 462 TAAAGGTAAG TTCTTTCATT TGAAAATTTT CTAGTTCCAC TATTCGTTTG AATCCCTAGA 68204 ||||| TAAAG..... .......... .......... .......... .......... .......... 467 GAAGGCTGGA CTATACATCT AAGACATGTC ATTTCATAAA GTTTGCTACA TACTGTTTGC 68264 .......... .......... .......... .......... .......... .......... 467 TATAAGCTAC ATATAATAAT GGGCAGACAA ATTTTACCCG TCAACTTCTG TACTTGTGAT 68324 .......... .......... .......... .......... .......... .......... 467 TAGCTCCCCC CCCCCCCCCC CCCTCCCCCC TTCCTTTCGT ACGACCCAAC CACATCCCTA 68384 .......... .......... .......... .......... .......... .......... 467 AATAAAAAAG TAGTGGAAGT ACAATTACTT GACTATTGCA ATATTTTTAG CTATTCATTT 68444 .......... .......... .......... .......... .......... .......... 467 ACTGTGATCC AGCAGGGAGA AAGAAG 68470 ||||| |||||| .......... .....GGAGA AAGAAG 478 hqPGS_C09HBa0278J12.1+_SGN-E209693+ (63885 64084,64183 64355,68056 68149) ******************************************************************************** EST sequence 110 +strand 577 n (File: SGN-E310722+) 1 AAAAATTTCT GGAGAAATTA ACGACTACTG AAGTTTCTAC CTCACCGGCG AAAGTTGCAG 61 CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG CGAACCAAAA TACGAACCCG AATCCGGCCC 121 CTAGCGGCGG CGAAGTTCCA CCAAATGTGA CTATTTACAT CAATAACCTC AATGAAAAAA 181 TTAAGCTTGA AGAGCTGAAG AAATCGATGC ACGCTGTGTT CTCACAGTTT GGTAAGATAC 241 TGGAGGTTTT AGCATTCAAA ACCCTAAAGC ATAAAGGACA GGCGTGGGTA GTGTTTGATG 301 AAGTTTCTTC TGCTAGCAAT GCACTTCGCC AGATGCAGGG TTTTCCTTTC TATGATAAGC 361 CTATGAGAAT ACAATATGCA AAGACGAAAT CTGATGTTGT AGCAAAAGCC GATGGTACTT 421 TTGTTCCCCG AGAAAAAAGA AAGAGGCACG AGGATAAAGG GAGAAAGAAG AAGGACCAGC 481 AAGATGCTAA TCAAGCTGGA ATGGGCCGGA ATCCTGCATA TGCTGGTGCT TATGGTGCAG 541 CACCTCCTTT CTCACAAATA CCATACATGG GTGGAGC Predicted gene structure (within gDNA segment 63293 to 69448): Exon 1 63893 64084 ( 192 n); cDNA 1 192 ( 192 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 193 365 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 366 459 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 460 548 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 0) Exon 5 69014 69042 ( 29 n); cDNA 549 577 ( 29 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E310722+ 1.000 577 1.000 C PGS_C09HBa0278J12.1+_SGN-E310722+ (63893 64084,64183 64355,68056 68149,68460 68548,69014 69042) Alignment (genomic DNA sequence = upper lines): AAAAATTTCT GGAGAAATTA ACGACTACTG AAGTTTCTAC CTCACCGGCG AAAGTTGCAG 63952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATTTCT GGAGAAATTA ACGACTACTG AAGTTTCTAC CTCACCGGCG AAAGTTGCAG 60 CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG CGAACCAAAA TACGAACCCG AATCCGGCCC 64012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG CGAACCAAAA TACGAACCCG AATCCGGCCC 120 CTAGCGGCGG CGAAGTTCCA CCAAATGTGA CTATTTACAT CAATAACCTC AATGAAAAAA 64072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGCGGCGG CGAAGTTCCA CCAAATGTGA CTATTTACAT CAATAACCTC AATGAAAAAA 180 TTAAGCTTGA AGGTACTCCG TACTTGTCTC GAATGTTTAT GCAGAACATT ATCTTTGTGT 64132 |||||||||| || TTAAGCTTGA AG........ .......... .......... .......... .......... 192 TTCACTGTTT GTAAAATGTG TTGTGTATAT TGATGGTGAT TAAATTGTAG AGCTGAAGAA 64192 |||||||||| .......... .......... .......... .......... .......... AGCTGAAGAA 202 ATCGATGCAC GCTGTGTTCT CACAGTTTGG TAAGATACTG GAGGTTTTAG CATTCAAAAC 64252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGATGCAC GCTGTGTTCT CACAGTTTGG TAAGATACTG GAGGTTTTAG CATTCAAAAC 262 CCTAAAGCAT AAAGGACAGG CGTGGGTAGT GTTTGATGAA GTTTCTTCTG CTAGCAATGC 64312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAAGCAT AAAGGACAGG CGTGGGTAGT GTTTGATGAA GTTTCTTCTG CTAGCAATGC 322 ACTTCGCCAG ATGCAGGGTT TTCCTTTCTA TGATAAGCCT ATGGTACTCA TTTCCATTGT 64372 |||||||||| |||||||||| |||||||||| |||||||||| ||| ACTTCGCCAG ATGCAGGGTT TTCCTTTCTA TGATAAGCCT ATG....... .......... 365 TTTTGTATTC TTCACTACTG GATTCTGGCT TGTTACTGTT GCAATATGCT TACTGCAATT 64432 .......... .......... .......... .......... .......... .......... 365 TCTACTTCAT TGACACAAAA TATATTCAGC TTTACTATCA ATCCATCAAC TGTACCTCTC 64492 .......... .......... .......... .......... .......... .......... 365 AAACTATCGA GGTTCAGCTA TATGTAGGTT TATATTGATT GGTTTATCGT AATTTAGTAT 64552 .......... .......... .......... .......... .......... .......... 365 TTTTATGCTG GCTGTGAATC CCCTTAATCT CCATGCTTCG TCTTTATATG GGCTTGGTAC 64612 .......... .......... .......... .......... .......... .......... 365 TGGATATGGT GCCTGAGCAT AGGTGGAGCT GAAGAAATTA AGTTTATTTT CCTGAAAAAA 64672 .......... .......... .......... .......... .......... .......... 365 TTAATGATCT GTAGGAAAGG TATCATACCA TATTTGTTCG ATTAGTGATC CTAGAACATA 64732 .......... .......... .......... .......... .......... .......... 365 TTAATTGCTC AAGCATTTAG GCATCTTACC TATGCTTAAT TAGAGAATAC TATTATTCAT 64792 .......... .......... .......... .......... .......... .......... 365 AGTCAAACTT AGTGCTCCCA CTGGTTGAGT TTATGTGTCA CAATTTGACT CAAAACTAAG 64852 .......... .......... .......... .......... .......... .......... 365 TTTAAGAAAG AAATAAAGAC TTATGAAACT TATAGACTTA AATATGCAAA AACATTTGTC 64912 .......... .......... .......... .......... .......... .......... 365 ACTGTAAGAC TTCTGAAACT TTTAATCTTA AACATGTCAT ATCAATTTTG TGTCTCTATG 64972 .......... .......... .......... .......... .......... .......... 365 AAGTTGTTAT CAAGAGTGAA TGGGAGAATT TGTTATCACA CTGTCAGTCT TGGGATGTGA 65032 .......... .......... .......... .......... .......... .......... 365 TGCATATCAG AAGTAAAGCT GTTAGGACTT AGGAGTAAGG ATGAGTGTTC TTGAGGTCTT 65092 .......... .......... .......... .......... .......... .......... 365 CAAACTAGTA GCCCTATATG GAAAGAAGAA CTGAACTGCT TTTGGCATTT TTATTTAAGC 65152 .......... .......... .......... .......... .......... .......... 365 AAACTACTAG ATGAGCTTAA TTGAAGAGAT ATGTTCAATG ATGATTCATA TAGTCAATTG 65212 .......... .......... .......... .......... .......... .......... 365 CAACTTCCTT GGGATTGGAT TCTTTTCATA ACCCCAATAC ATGTTGTATG CATTACTAGA 65272 .......... .......... .......... .......... .......... .......... 365 ATAGCATGAT AAAAATCAAA GACTATATCC AACTTGAAGC AATCTTGATT GTTCCCTCAT 65332 .......... .......... .......... .......... .......... .......... 365 TGCTTCTCAA AGGAGTTGGA GCATGTTTGT CGTAATCCAG CAAACAACTA TACAAAATTT 65392 .......... .......... .......... .......... .......... .......... 365 ATCAAGCATA GAATGTTGTC TCAATCCTCA ATATTTGGGA TTGGCTACGC GTGTCCTTTA 65452 .......... .......... .......... .......... .......... .......... 365 CATTTCCGCT TTATTTAAGT TTCTAATAAC TTAAATAATT TGTTTTTGAA GGATAGTTTG 65512 .......... .......... .......... .......... .......... .......... 365 GCTAAAACTA GATCTTTTGT ATATTACAAT TATCCTATAC TGACATACAA ATCTCGACCA 65572 .......... .......... .......... .......... .......... .......... 365 CATCAAGGAA CTCCTTATAA TCACCAAACC TATCATGCTT GTGATTCAAG ATATTTGATA 65632 .......... .......... .......... .......... .......... .......... 365 TGTTAGTGTG ATTGACTGAT AAGGGCACAT TAGTTAGTTC ATTGGCTAAT GACATGAGGC 65692 .......... .......... .......... .......... .......... .......... 365 TAAGATCCGG CATGACCAAG TGGCAAGATT AGCGGTTCTT AGTCTCGTTA TTTGGAGGTA 65752 .......... .......... .......... .......... .......... .......... 365 GATGGAGGAG ATATAGAAAC CATGTTGACT CATAAGATTC TATATTTAAT AGCACCGGAA 65812 .......... .......... .......... .......... .......... .......... 365 TATTATTATA GTTAGCCTTC TCTCCCATGA ATTCTCCGTC CAACCAAATT GGATCTGCCT 65872 .......... .......... .......... .......... .......... .......... 365 TTGCAAGTCT TTCTGCAGTT TCTGCAAAGT GTATTTAGAA CTTATGATGA GATGGCCTAC 65932 .......... .......... .......... .......... .......... .......... 365 GGTAGAAAAC TCGATGGGTT AGGACAACCC ATTTTGTGTT ACCAATCCCA GTGGAACTCC 65992 .......... .......... .......... .......... .......... .......... 365 CATTACTGGT CTATTAATGG AGGAGTAACA TCAGCAACTA AAGCTTATCC CCAATTTGTT 66052 .......... .......... .......... .......... .......... .......... 365 GAGTATTATC TATAAAGTTG CTTTGTTGTG TTATATCCTT GCTAAGTCCC AATTGATTAT 66112 .......... .......... .......... .......... .......... .......... 365 GTGAGCTTAT ACGTCTTTTC TGAGACAAGT TTTCTCTTTG TATTTTTAGT CGACCTCATT 66172 .......... .......... .......... .......... .......... .......... 365 CCTTTTAGCA CATTCTTTCA TTGTAGTGTA ATATCCATGG ACCGTAGGTA AGATGTCTAT 66232 .......... .......... .......... .......... .......... .......... 365 ACAGGACATA ATCAGTCCTC GATATGCGTT ACTTGCATCC TCAGTCAGAT GTCTTCGGTT 66292 .......... .......... .......... .......... .......... .......... 365 TTGTTCCTCT GTAATATTCA TGTATGTATT GGTCCATAGA TGGAAGAATG GAGTCAGAAT 66352 .......... .......... .......... .......... .......... .......... 365 AGATAATTGC AGTCATAAGC TGCTCCATTG TTTCTATAAA CAACTGTATC TCCTGGTCTC 66412 .......... .......... .......... .......... .......... .......... 365 AGAGATTGGT TAAGATAATC CTTGTCAAAG ATATTCTGAC CTGGAAATCC AAATGAGGAT 66472 .......... .......... .......... .......... .......... .......... 365 ATTCTGAAAT GTACATGCTG CTTTAGCATT ATGTGAGCTG TGACTTTGCA AATTGTACTT 66532 .......... .......... .......... .......... .......... .......... 365 CTTTAGACTT TAGTTTCAAT TGTGTAGTAG ATGCATATTT CTCATCTTCA CTTGAGTTTA 66592 .......... .......... .......... .......... .......... .......... 365 AGAGTGTTTT CCATGCTAAT TCTGGGTGTC ACCTCATTGC TTGGTGTTTC TTTTTTGAAA 66652 .......... .......... .......... .......... .......... .......... 365 ATTGTTTTGA TGAATATGGT TTAGAGTGGT TGCTTTCCAT AGGCACCCTA GAAGTGCAAA 66712 .......... .......... .......... .......... .......... .......... 365 TATAAGAGTT GTTGCTTTCC ATAGGCACCC TAGAAGTGCA AATAGTTGCA GGAGAAAAAC 66772 .......... .......... .......... .......... .......... .......... 365 TCAAATGTCC ACAAAGTTGA GTAACTCAGG TGAAGTGTCT ATGTGATGTA CATTCAGGGG 66832 .......... .......... .......... .......... .......... .......... 365 CGGCTCGACG TAATTGGGAG CCTAAAGAGA AATTTCAATT GGCGGCCTAA AATATAAATA 66892 .......... .......... .......... .......... .......... .......... 365 TACTTCATTT ACGTATTTAT TTAAAAAAAT TATACTATTA AGATGAAAAT TATTAGTACT 66952 .......... .......... .......... .......... .......... .......... 365 TAATATTATT TTTTCAGATA CTAGTTTTAA GTAAGGCTCA ACATTGAAAA ACATCTTAAG 67012 .......... .......... .......... .......... .......... .......... 365 TGAGATAATT ATTATATGTA TTGTTAACAC AATGATACAA GTAATAAGTT GATAAATATT 67072 .......... .......... .......... .......... .......... .......... 365 AAATAAAGAT AAGAGTTAGA ATCATAGAAT TTGACTCTAA AAGTTGATGA CTTGGTATAA 67132 .......... .......... .......... .......... .......... .......... 365 CCTCATTTTA AAATGCTTAG AGTAACGCTT GAAACTAAAA TTTGAAAAAA ATGAAATAAA 67192 .......... .......... .......... .......... .......... .......... 365 ATTGTAATTC ACTTTGTAAC ACTTTTCACT GTTAATTCTC ATTTTTAACA AAGTACAAAA 67252 .......... .......... .......... .......... .......... .......... 365 GATGTTAAAG TGGATAAAAT AATTTGTTTT TAAATAAATT ATACTTTTTA TCATAAATAA 67312 .......... .......... .......... .......... .......... .......... 365 TAAATTTTTT ATAAAAATTT TAACACATAA TTTATTCTTC ACAAAAAATT TTGGCCCCCG 67372 .......... .......... .......... .......... .......... .......... 365 AAATTTGGGG CCTAAGGCGA AGGCCTTATT ATTTAATGCA TAGAGCAGGC TCTGTGTACA 67432 .......... .......... .......... .......... .......... .......... 365 TTAATGACGT TACACCAAAA AGACAAAGTA CAAACATCTA TATTTAGTTG TTTTTTGTTC 67492 .......... .......... .......... .......... .......... .......... 365 TCTTGCAAAA CATGTTACCA CTATACTTTG TTGTTTTGTC CTCATCAAAT AGTTGTTTTC 67552 .......... .......... .......... .......... .......... .......... 365 TGTTCTTGCA TGGGGTGCTG CCGTAACTAC TGATGATTCA CATGCAGAAT GTTAAAATGT 67612 .......... .......... .......... .......... .......... .......... 365 TTGTTGATAT TGTTTTGCAT TCTTTGGTTT TCTTACATCA TACATGCTAC TCAGTCCATT 67672 .......... .......... .......... .......... .......... .......... 365 TCCTCATTGA GTTAAACAAC TGGTTTGAGT GAATTTTCTC AATGTTTACT TTTAAATGCA 67732 .......... .......... .......... .......... .......... .......... 365 ATGCTACTCT TTGCATTTAC ATATGAGCAT GTTACGGGGT TTAGCGAAGT GCATATAATG 67792 .......... .......... .......... .......... .......... .......... 365 CTATACAATG TGACCACCTA TTTGTTTGTG GTTCTTGCAT GCGCATGCTA TGTTCATCTG 67852 .......... .......... .......... .......... .......... .......... 365 TTTATTACTC AAGCAAAATT AATGTTGCTT CTAGATGCTT AATGAGGTTG GGGTTTCGTA 67912 .......... .......... .......... .......... .......... .......... 365 CCTGGAGTTG CTTTTTTAGT TCCTGAATTA ACTTCTTTAG TTCAATTATG TCTTAAAATG 67972 .......... .......... .......... .......... .......... .......... 365 TCATTTTGAT TACCACTGTT ATATGTTTCT GGTGTACTAT AGATTGGTTA CATAGTTTTT 68032 .......... .......... .......... .......... .......... .......... 365 TGACACACAT ATATGTATAT CAGAGAATAC AATATGCAAA GACGAAATCT GATGTTGTAG 68092 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...AGAATAC AATATGCAAA GACGAAATCT GATGTTGTAG 402 CAAAAGCCGA TGGTACTTTT GTTCCCCGAG AAAAAAGAAA GAGGCACGAG GATAAAGGTA 68152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAAAAGCCGA TGGTACTTTT GTTCCCCGAG AAAAAAGAAA GAGGCACGAG GATAAAG... 459 AGTTCTTTCA TTTGAAAATT TTCTAGTTCC ACTATTCGTT TGAATCCCTA GAGAAGGCTG 68212 .......... .......... .......... .......... .......... .......... 459 GACTATACAT CTAAGACATG TCATTTCATA AAGTTTGCTA CATACTGTTT GCTATAAGCT 68272 .......... .......... .......... .......... .......... .......... 459 ACATATAATA ATGGGCAGAC AAATTTTACC CGTCAACTTC TGTACTTGTG ATTAGCTCCC 68332 .......... .......... .......... .......... .......... .......... 459 CCCCCCCCCC CCCCCTCCCC CCTTCCTTTC GTACGACCCA ACCACATCCC TAAATAAAAA 68392 .......... .......... .......... .......... .......... .......... 459 AGTAGTGGAA GTACAATTAC TTGACTATTG CAATATTTTT AGCTATTCAT TTACTGTGAT 68452 .......... .......... .......... .......... .......... .......... 459 CCAGCAGGGA GAAAGAAGAA GGACCAGCAA GATGCTAATC AAGCTGGAAT GGGCCGGAAT 68512 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GGA GAAAGAAGAA GGACCAGCAA GATGCTAATC AAGCTGGAAT GGGCCGGAAT 512 CCTGCATATG CTGGTGCTTA TGGTGCAGCA CCTCCTGTAA GCATTTTCCC TTCTTTTCAG 68572 |||||||||| |||||||||| |||||||||| |||||| CCTGCATATG CTGGTGCTTA TGGTGCAGCA CCTCCT.... .......... .......... 548 AAACTTTGTT TAGTTTCCTG TTTTCTGCGT CATATATTGA ATTAATGGGA TTGTATCATC 68632 .......... .......... .......... .......... .......... .......... 548 TCTTTTCCTG TCACCACACT ATACGAAGTT TATCAGATGA TGTGATTTTG ATTTCGTTTT 68692 .......... .......... .......... .......... .......... .......... 548 GAAAGATGTA ATCTGATTTT CCTATTAAGC ACACTAACAC ATTTCTTGGG GTGAAATGAA 68752 .......... .......... .......... .......... .......... .......... 548 AACGGGAGCA ATACTTGAAA ATGATCCATG TTGCATGGAT AGTAGAAGTT ATGTAGTTAA 68812 .......... .......... .......... .......... .......... .......... 548 GAGTTAGAAG TTTGTTGCTG GGTTCTTGAT TAGTTTGTGA TTTGTCTCTC ATTTTGGTGA 68872 .......... .......... .......... .......... .......... .......... 548 AATCTTGATG TATTGAGTTA CACCCTTCTA ATGCATAGAG GTTTAAAATG TAGTCAATTA 68932 .......... .......... .......... .......... .......... .......... 548 GTGCTTAATT GTGATTTTCT TAGATGCTTT TACCAGAAAC TTCCTCAAAT GTAATTGTTT 68992 .......... .......... .......... .......... .......... .......... 548 CCCCTTCTCC ACTTGTTGCA GTTCTCACAA ATACCATACA TGGGTGGAGC 69042 ||||||||| |||||||||| |||||||||| .......... .......... .TTCTCACAA ATACCATACA TGGGTGGAGC 577 hqPGS_C09HBa0278J12.1+_SGN-E310722+ (63893 64084,64183 64355,68056 68149,68460 68548,69014 69042) ******************************************************************************** EST sequence 12 +strand 548 n (File: SGN-E326387+) 1 AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 61 CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 121 CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AGAGCTGAAG AAATCGATGC 181 ACGCTGTGTT CTCACAGTTT GGTAAGAATA CTGGAGGTTT TAGCATTCAA AACCCTAAAG 241 CATAAAGGAC AGGCGTGGGT AGTGTTTGAT GAAGTTTCTT CTGCTAGCAA TGCACTTCGC 301 CAGATGCAGG GTTTTCCTTT CTATGATAAG CCTATGAGAA TACAATATGC AAAGACGAAA 361 TCTGATGTTG TAGCAAAAGC CGATGGTACT TTTGTTCCCC GAGAAAAAAG AAAGAGGCAC 421 GAGGATAAAG GGAGAAAGAA GAAGGACCAG CAAGATGCTA ATCAAGCTGG AATGGGCCGG 481 AATCCTGCAT ATGCTGGTGC TTATGGTGCA GCACCTCCTT TCTCACAAAT ACCATACATG 541 GGTGGAGC Predicted gene structure (within gDNA segment 63323 to 69448): Exon 1 63923 64084 ( 162 n); cDNA 1 162 ( 162 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 0.95) Exon 2 64183 64355 ( 173 n); cDNA 163 336 ( 174 n); score: 0.986 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 337 430 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 431 519 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 0) Exon 5 69014 69042 ( 29 n); cDNA 520 548 ( 29 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E326387+ 0.995 547 0.998 C PGS_C09HBa0278J12.1+_SGN-E326387+ (63923 64084,64183 64355,68056 68149,68460 68548,69014 69042) Alignment (genomic DNA sequence = upper lines): AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 63982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 60 CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 64042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 120 CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AGGTACTCCG TACTTGTCTC 64102 |||||||||| |||||||||| |||||||||| |||||||||| || CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AG........ .......... 162 GAATGTTTAT GCAGAACATT ATCTTTGTGT TTCACTGTTT GTAAAATGTG TTGTGTATAT 64162 .......... .......... .......... .......... .......... .......... 162 TGATGGTGAT TAAATTGTAG AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG 64222 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG 202 TAAG-ATACT GGAGGTTTTA GCATTCAAAA CCCTAAAGCA TAAAGGACAG GCGTGGGTAG 64281 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAATACT GGAGGTTTTA GCATTCAAAA CCCTAAAGCA TAAAGGACAG GCGTGGGTAG 262 TGTTTGATGA AGTTTCTTCT GCTAGCAATG CACTTCGCCA GATGCAGGGT TTTCCTTTCT 64341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGATGA AGTTTCTTCT GCTAGCAATG CACTTCGCCA GATGCAGGGT TTTCCTTTCT 322 ATGATAAGCC TATGGTACTC ATTTCCATTG TTTTTGTATT CTTCACTACT GGATTCTGGC 64401 |||||||||| |||| ATGATAAGCC TATG...... .......... .......... .......... .......... 336 TTGTTACTGT TGCAATATGC TTACTGCAAT TTCTACTTCA TTGACACAAA ATATATTCAG 64461 .......... .......... .......... .......... .......... .......... 336 CTTTACTATC AATCCATCAA CTGTACCTCT CAAACTATCG AGGTTCAGCT ATATGTAGGT 64521 .......... .......... .......... .......... .......... .......... 336 TTATATTGAT TGGTTTATCG TAATTTAGTA TTTTTATGCT GGCTGTGAAT CCCCTTAATC 64581 .......... .......... .......... .......... .......... .......... 336 TCCATGCTTC GTCTTTATAT GGGCTTGGTA CTGGATATGG TGCCTGAGCA TAGGTGGAGC 64641 .......... .......... .......... .......... .......... .......... 336 TGAAGAAATT AAGTTTATTT TCCTGAAAAA ATTAATGATC TGTAGGAAAG GTATCATACC 64701 .......... .......... .......... .......... .......... .......... 336 ATATTTGTTC GATTAGTGAT CCTAGAACAT ATTAATTGCT CAAGCATTTA GGCATCTTAC 64761 .......... .......... .......... .......... .......... .......... 336 CTATGCTTAA TTAGAGAATA CTATTATTCA TAGTCAAACT TAGTGCTCCC ACTGGTTGAG 64821 .......... .......... .......... .......... .......... .......... 336 TTTATGTGTC ACAATTTGAC TCAAAACTAA GTTTAAGAAA GAAATAAAGA CTTATGAAAC 64881 .......... .......... .......... .......... .......... .......... 336 TTATAGACTT AAATATGCAA AAACATTTGT CACTGTAAGA CTTCTGAAAC TTTTAATCTT 64941 .......... .......... .......... .......... .......... .......... 336 AAACATGTCA TATCAATTTT GTGTCTCTAT GAAGTTGTTA TCAAGAGTGA ATGGGAGAAT 65001 .......... .......... .......... .......... .......... .......... 336 TTGTTATCAC ACTGTCAGTC TTGGGATGTG ATGCATATCA GAAGTAAAGC TGTTAGGACT 65061 .......... .......... .......... .......... .......... .......... 336 TAGGAGTAAG GATGAGTGTT CTTGAGGTCT TCAAACTAGT AGCCCTATAT GGAAAGAAGA 65121 .......... .......... .......... .......... .......... .......... 336 ACTGAACTGC TTTTGGCATT TTTATTTAAG CAAACTACTA GATGAGCTTA ATTGAAGAGA 65181 .......... .......... .......... .......... .......... .......... 336 TATGTTCAAT GATGATTCAT ATAGTCAATT GCAACTTCCT TGGGATTGGA TTCTTTTCAT 65241 .......... .......... .......... .......... .......... .......... 336 AACCCCAATA CATGTTGTAT GCATTACTAG AATAGCATGA TAAAAATCAA AGACTATATC 65301 .......... .......... .......... .......... .......... .......... 336 CAACTTGAAG CAATCTTGAT TGTTCCCTCA TTGCTTCTCA AAGGAGTTGG AGCATGTTTG 65361 .......... .......... .......... .......... .......... .......... 336 TCGTAATCCA GCAAACAACT ATACAAAATT TATCAAGCAT AGAATGTTGT CTCAATCCTC 65421 .......... .......... .......... .......... .......... .......... 336 AATATTTGGG ATTGGCTACG CGTGTCCTTT ACATTTCCGC TTTATTTAAG TTTCTAATAA 65481 .......... .......... .......... .......... .......... .......... 336 CTTAAATAAT TTGTTTTTGA AGGATAGTTT GGCTAAAACT AGATCTTTTG TATATTACAA 65541 .......... .......... .......... .......... .......... .......... 336 TTATCCTATA CTGACATACA AATCTCGACC ACATCAAGGA ACTCCTTATA ATCACCAAAC 65601 .......... .......... .......... .......... .......... .......... 336 CTATCATGCT TGTGATTCAA GATATTTGAT ATGTTAGTGT GATTGACTGA TAAGGGCACA 65661 .......... .......... .......... .......... .......... .......... 336 TTAGTTAGTT CATTGGCTAA TGACATGAGG CTAAGATCCG GCATGACCAA GTGGCAAGAT 65721 .......... .......... .......... .......... .......... .......... 336 TAGCGGTTCT TAGTCTCGTT ATTTGGAGGT AGATGGAGGA GATATAGAAA CCATGTTGAC 65781 .......... .......... .......... .......... .......... .......... 336 TCATAAGATT CTATATTTAA TAGCACCGGA ATATTATTAT AGTTAGCCTT CTCTCCCATG 65841 .......... .......... .......... .......... .......... .......... 336 AATTCTCCGT CCAACCAAAT TGGATCTGCC TTTGCAAGTC TTTCTGCAGT TTCTGCAAAG 65901 .......... .......... .......... .......... .......... .......... 336 TGTATTTAGA ACTTATGATG AGATGGCCTA CGGTAGAAAA CTCGATGGGT TAGGACAACC 65961 .......... .......... .......... .......... .......... .......... 336 CATTTTGTGT TACCAATCCC AGTGGAACTC CCATTACTGG TCTATTAATG GAGGAGTAAC 66021 .......... .......... .......... .......... .......... .......... 336 ATCAGCAACT AAAGCTTATC CCCAATTTGT TGAGTATTAT CTATAAAGTT GCTTTGTTGT 66081 .......... .......... .......... .......... .......... .......... 336 GTTATATCCT TGCTAAGTCC CAATTGATTA TGTGAGCTTA TACGTCTTTT CTGAGACAAG 66141 .......... .......... .......... .......... .......... .......... 336 TTTTCTCTTT GTATTTTTAG TCGACCTCAT TCCTTTTAGC ACATTCTTTC ATTGTAGTGT 66201 .......... .......... .......... .......... .......... .......... 336 AATATCCATG GACCGTAGGT AAGATGTCTA TACAGGACAT AATCAGTCCT CGATATGCGT 66261 .......... .......... .......... .......... .......... .......... 336 TACTTGCATC CTCAGTCAGA TGTCTTCGGT TTTGTTCCTC TGTAATATTC ATGTATGTAT 66321 .......... .......... .......... .......... .......... .......... 336 TGGTCCATAG ATGGAAGAAT GGAGTCAGAA TAGATAATTG CAGTCATAAG CTGCTCCATT 66381 .......... .......... .......... .......... .......... .......... 336 GTTTCTATAA ACAACTGTAT CTCCTGGTCT CAGAGATTGG TTAAGATAAT CCTTGTCAAA 66441 .......... .......... .......... .......... .......... .......... 336 GATATTCTGA CCTGGAAATC CAAATGAGGA TATTCTGAAA TGTACATGCT GCTTTAGCAT 66501 .......... .......... .......... .......... .......... .......... 336 TATGTGAGCT GTGACTTTGC AAATTGTACT TCTTTAGACT TTAGTTTCAA TTGTGTAGTA 66561 .......... .......... .......... .......... .......... .......... 336 GATGCATATT TCTCATCTTC ACTTGAGTTT AAGAGTGTTT TCCATGCTAA TTCTGGGTGT 66621 .......... .......... .......... .......... .......... .......... 336 CACCTCATTG CTTGGTGTTT CTTTTTTGAA AATTGTTTTG ATGAATATGG TTTAGAGTGG 66681 .......... .......... .......... .......... .......... .......... 336 TTGCTTTCCA TAGGCACCCT AGAAGTGCAA ATATAAGAGT TGTTGCTTTC CATAGGCACC 66741 .......... .......... .......... .......... .......... .......... 336 CTAGAAGTGC AAATAGTTGC AGGAGAAAAA CTCAAATGTC CACAAAGTTG AGTAACTCAG 66801 .......... .......... .......... .......... .......... .......... 336 GTGAAGTGTC TATGTGATGT ACATTCAGGG GCGGCTCGAC GTAATTGGGA GCCTAAAGAG 66861 .......... .......... .......... .......... .......... .......... 336 AAATTTCAAT TGGCGGCCTA AAATATAAAT ATACTTCATT TACGTATTTA TTTAAAAAAA 66921 .......... .......... .......... .......... .......... .......... 336 TTATACTATT AAGATGAAAA TTATTAGTAC TTAATATTAT TTTTTCAGAT ACTAGTTTTA 66981 .......... .......... .......... .......... .......... .......... 336 AGTAAGGCTC AACATTGAAA AACATCTTAA GTGAGATAAT TATTATATGT ATTGTTAACA 67041 .......... .......... .......... .......... .......... .......... 336 CAATGATACA AGTAATAAGT TGATAAATAT TAAATAAAGA TAAGAGTTAG AATCATAGAA 67101 .......... .......... .......... .......... .......... .......... 336 TTTGACTCTA AAAGTTGATG ACTTGGTATA ACCTCATTTT AAAATGCTTA GAGTAACGCT 67161 .......... .......... .......... .......... .......... .......... 336 TGAAACTAAA ATTTGAAAAA AATGAAATAA AATTGTAATT CACTTTGTAA CACTTTTCAC 67221 .......... .......... .......... .......... .......... .......... 336 TGTTAATTCT CATTTTTAAC AAAGTACAAA AGATGTTAAA GTGGATAAAA TAATTTGTTT 67281 .......... .......... .......... .......... .......... .......... 336 TTAAATAAAT TATACTTTTT ATCATAAATA ATAAATTTTT TATAAAAATT TTAACACATA 67341 .......... .......... .......... .......... .......... .......... 336 ATTTATTCTT CACAAAAAAT TTTGGCCCCC GAAATTTGGG GCCTAAGGCG AAGGCCTTAT 67401 .......... .......... .......... .......... .......... .......... 336 TATTTAATGC ATAGAGCAGG CTCTGTGTAC ATTAATGACG TTACACCAAA AAGACAAAGT 67461 .......... .......... .......... .......... .......... .......... 336 ACAAACATCT ATATTTAGTT GTTTTTTGTT CTCTTGCAAA ACATGTTACC ACTATACTTT 67521 .......... .......... .......... .......... .......... .......... 336 GTTGTTTTGT CCTCATCAAA TAGTTGTTTT CTGTTCTTGC ATGGGGTGCT GCCGTAACTA 67581 .......... .......... .......... .......... .......... .......... 336 CTGATGATTC ACATGCAGAA TGTTAAAATG TTTGTTGATA TTGTTTTGCA TTCTTTGGTT 67641 .......... .......... .......... .......... .......... .......... 336 TTCTTACATC ATACATGCTA CTCAGTCCAT TTCCTCATTG AGTTAAACAA CTGGTTTGAG 67701 .......... .......... .......... .......... .......... .......... 336 TGAATTTTCT CAATGTTTAC TTTTAAATGC AATGCTACTC TTTGCATTTA CATATGAGCA 67761 .......... .......... .......... .......... .......... .......... 336 TGTTACGGGG TTTAGCGAAG TGCATATAAT GCTATACAAT GTGACCACCT ATTTGTTTGT 67821 .......... .......... .......... .......... .......... .......... 336 GGTTCTTGCA TGCGCATGCT ATGTTCATCT GTTTATTACT CAAGCAAAAT TAATGTTGCT 67881 .......... .......... .......... .......... .......... .......... 336 TCTAGATGCT TAATGAGGTT GGGGTTTCGT ACCTGGAGTT GCTTTTTTAG TTCCTGAATT 67941 .......... .......... .......... .......... .......... .......... 336 AACTTCTTTA GTTCAATTAT GTCTTAAAAT GTCATTTTGA TTACCACTGT TATATGTTTC 68001 .......... .......... .......... .......... .......... .......... 336 TGGTGTACTA TAGATTGGTT ACATAGTTTT TTGACACACA TATATGTATA TCAGAGAATA 68061 |||||| .......... .......... .......... .......... .......... ....AGAATA 342 CAATATGCAA AGACGAAATC TGATGTTGTA GCAAAAGCCG ATGGTACTTT TGTTCCCCGA 68121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATGCAA AGACGAAATC TGATGTTGTA GCAAAAGCCG ATGGTACTTT TGTTCCCCGA 402 GAAAAAAGAA AGAGGCACGA GGATAAAGGT AAGTTCTTTC ATTTGAAAAT TTTCTAGTTC 68181 |||||||||| |||||||||| |||||||| GAAAAAAGAA AGAGGCACGA GGATAAAG.. .......... .......... .......... 430 CACTATTCGT TTGAATCCCT AGAGAAGGCT GGACTATACA TCTAAGACAT GTCATTTCAT 68241 .......... .......... .......... .......... .......... .......... 430 AAAGTTTGCT ACATACTGTT TGCTATAAGC TACATATAAT AATGGGCAGA CAAATTTTAC 68301 .......... .......... .......... .......... .......... .......... 430 CCGTCAACTT CTGTACTTGT GATTAGCTCC CCCCCCCCCC CCCCCCTCCC CCCTTCCTTT 68361 .......... .......... .......... .......... .......... .......... 430 CGTACGACCC AACCACATCC CTAAATAAAA AAGTAGTGGA AGTACAATTA CTTGACTATT 68421 .......... .......... .......... .......... .......... .......... 430 GCAATATTTT TAGCTATTCA TTTACTGTGA TCCAGCAGGG AGAAAGAAGA AGGACCAGCA 68481 || |||||||||| |||||||||| .......... .......... .......... ........GG AGAAAGAAGA AGGACCAGCA 452 AGATGCTAAT CAAGCTGGAA TGGGCCGGAA TCCTGCATAT GCTGGTGCTT ATGGTGCAGC 68541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTAAT CAAGCTGGAA TGGGCCGGAA TCCTGCATAT GCTGGTGCTT ATGGTGCAGC 512 ACCTCCTGTA AGCATTTTCC CTTCTTTTCA GAAACTTTGT TTAGTTTCCT GTTTTCTGCG 68601 ||||||| ACCTCCT... .......... .......... .......... .......... .......... 519 TCATATATTG AATTAATGGG ATTGTATCAT CTCTTTTCCT GTCACCACAC TATACGAAGT 68661 .......... .......... .......... .......... .......... .......... 519 TTATCAGATG ATGTGATTTT GATTTCGTTT TGAAAGATGT AATCTGATTT TCCTATTAAG 68721 .......... .......... .......... .......... .......... .......... 519 CACACTAACA CATTTCTTGG GGTGAAATGA AAACGGGAGC AATACTTGAA AATGATCCAT 68781 .......... .......... .......... .......... .......... .......... 519 GTTGCATGGA TAGTAGAAGT TATGTAGTTA AGAGTTAGAA GTTTGTTGCT GGGTTCTTGA 68841 .......... .......... .......... .......... .......... .......... 519 TTAGTTTGTG ATTTGTCTCT CATTTTGGTG AAATCTTGAT GTATTGAGTT ACACCCTTCT 68901 .......... .......... .......... .......... .......... .......... 519 AATGCATAGA GGTTTAAAAT GTAGTCAATT AGTGCTTAAT TGTGATTTTC TTAGATGCTT 68961 .......... .......... .......... .......... .......... .......... 519 TTACCAGAAA CTTCCTCAAA TGTAATTGTT TCCCCTTCTC CACTTGTTGC AGTTCTCACA 69021 |||||||| .......... .......... .......... .......... .......... ..TTCTCACA 527 AATACCATAC ATGGGTGGAG C 69042 |||||||||| |||||||||| | AATACCATAC ATGGGTGGAG C 548 hqPGS_C09HBa0278J12.1+_SGN-E326387+ (63923 64084,64183 64355,68056 68149,68460 68548,69014 69042) ******************************************************************************** EST sequence 8 +strand 542 n (File: SGN-E251243+) 1 AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 61 CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 121 CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AGAGCTGAAG AAATCGATGC 181 ACGCTGTGTT CTCACAGTTT GGTAAGATAC TGGAGGTTTT AGCATTCAAA ACCCTAAAGC 241 ATAAAGGACA GGCGTGGGTA GTGTTTGATG AAGTTTCTTC TGCTAGCAAT GCACTTCGCC 301 AGATGCAGGG TTTTCCTTTC TATGATAAGC CTATGAGAAT ACAATATGCA AAGACGAAAT 361 CTGATGTTGT AGCAAAAGCC GATGGTACTT TTGTTCCCCG AGAAAAAAGA AAGAGGCACG 421 AGGATAAAGG GAGAAAGAAG AAGGACCAGC AAGATGCTAA TCAAGCTGGA ATGGGCCGGA 481 ATCCTGCATA TGCTGGTGCT TATGGTGCAG CACCTCCTTT CTCACAAATA CCATACATGG 541 GT Predicted gene structure (within gDNA segment 63323 to 69398): Exon 1 63923 64084 ( 162 n); cDNA 1 162 ( 162 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 163 335 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 336 429 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 430 518 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 0) Exon 5 69014 69037 ( 24 n); cDNA 519 542 ( 24 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E251243+ 1.000 542 1.000 C PGS_C09HBa0278J12.1+_SGN-E251243+ (63923 64084,64183 64355,68056 68149,68460 68548,69014 69037) Alignment (genomic DNA sequence = upper lines): AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 63982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTCTAC CTCACCGGCG AAAGTTGCAG CTAGGCGTAG ACGAGCAGCC ATGGCGGAGG 60 CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 64042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCAAAA TACGAACCCG AATCCGGCCC CTAGCGGCGG CGAAGTTCCA CCAAATGTGA 120 CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AGGTACTCCG TACTTGTCTC 64102 |||||||||| |||||||||| |||||||||| |||||||||| || CTATTTACAT CAATAACCTC AATGAAAAAA TTAAGCTTGA AG........ .......... 162 GAATGTTTAT GCAGAACATT ATCTTTGTGT TTCACTGTTT GTAAAATGTG TTGTGTATAT 64162 .......... .......... .......... .......... .......... .......... 162 TGATGGTGAT TAAATTGTAG AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG 64222 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG 202 TAAGATACTG GAGGTTTTAG CATTCAAAAC CCTAAAGCAT AAAGGACAGG CGTGGGTAGT 64282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGATACTG GAGGTTTTAG CATTCAAAAC CCTAAAGCAT AAAGGACAGG CGTGGGTAGT 262 GTTTGATGAA GTTTCTTCTG CTAGCAATGC ACTTCGCCAG ATGCAGGGTT TTCCTTTCTA 64342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGATGAA GTTTCTTCTG CTAGCAATGC ACTTCGCCAG ATGCAGGGTT TTCCTTTCTA 322 TGATAAGCCT ATGGTACTCA TTTCCATTGT TTTTGTATTC TTCACTACTG GATTCTGGCT 64402 |||||||||| ||| TGATAAGCCT ATG....... .......... .......... .......... .......... 335 TGTTACTGTT GCAATATGCT TACTGCAATT TCTACTTCAT TGACACAAAA TATATTCAGC 64462 .......... .......... .......... .......... .......... .......... 335 TTTACTATCA ATCCATCAAC TGTACCTCTC AAACTATCGA GGTTCAGCTA TATGTAGGTT 64522 .......... .......... .......... .......... .......... .......... 335 TATATTGATT GGTTTATCGT AATTTAGTAT TTTTATGCTG GCTGTGAATC CCCTTAATCT 64582 .......... .......... .......... .......... .......... .......... 335 CCATGCTTCG TCTTTATATG GGCTTGGTAC TGGATATGGT GCCTGAGCAT AGGTGGAGCT 64642 .......... .......... .......... .......... .......... .......... 335 GAAGAAATTA AGTTTATTTT CCTGAAAAAA TTAATGATCT GTAGGAAAGG TATCATACCA 64702 .......... .......... .......... .......... .......... .......... 335 TATTTGTTCG ATTAGTGATC CTAGAACATA TTAATTGCTC AAGCATTTAG GCATCTTACC 64762 .......... .......... .......... .......... .......... .......... 335 TATGCTTAAT TAGAGAATAC TATTATTCAT AGTCAAACTT AGTGCTCCCA CTGGTTGAGT 64822 .......... .......... .......... .......... .......... .......... 335 TTATGTGTCA CAATTTGACT CAAAACTAAG TTTAAGAAAG AAATAAAGAC TTATGAAACT 64882 .......... .......... .......... .......... .......... .......... 335 TATAGACTTA AATATGCAAA AACATTTGTC ACTGTAAGAC TTCTGAAACT TTTAATCTTA 64942 .......... .......... .......... .......... .......... .......... 335 AACATGTCAT ATCAATTTTG TGTCTCTATG AAGTTGTTAT CAAGAGTGAA TGGGAGAATT 65002 .......... .......... .......... .......... .......... .......... 335 TGTTATCACA CTGTCAGTCT TGGGATGTGA TGCATATCAG AAGTAAAGCT GTTAGGACTT 65062 .......... .......... .......... .......... .......... .......... 335 AGGAGTAAGG ATGAGTGTTC TTGAGGTCTT CAAACTAGTA GCCCTATATG GAAAGAAGAA 65122 .......... .......... .......... .......... .......... .......... 335 CTGAACTGCT TTTGGCATTT TTATTTAAGC AAACTACTAG ATGAGCTTAA TTGAAGAGAT 65182 .......... .......... .......... .......... .......... .......... 335 ATGTTCAATG ATGATTCATA TAGTCAATTG CAACTTCCTT GGGATTGGAT TCTTTTCATA 65242 .......... .......... .......... .......... .......... .......... 335 ACCCCAATAC ATGTTGTATG CATTACTAGA ATAGCATGAT AAAAATCAAA GACTATATCC 65302 .......... .......... .......... .......... .......... .......... 335 AACTTGAAGC AATCTTGATT GTTCCCTCAT TGCTTCTCAA AGGAGTTGGA GCATGTTTGT 65362 .......... .......... .......... .......... .......... .......... 335 CGTAATCCAG CAAACAACTA TACAAAATTT ATCAAGCATA GAATGTTGTC TCAATCCTCA 65422 .......... .......... .......... .......... .......... .......... 335 ATATTTGGGA TTGGCTACGC GTGTCCTTTA CATTTCCGCT TTATTTAAGT TTCTAATAAC 65482 .......... .......... .......... .......... .......... .......... 335 TTAAATAATT TGTTTTTGAA GGATAGTTTG GCTAAAACTA GATCTTTTGT ATATTACAAT 65542 .......... .......... .......... .......... .......... .......... 335 TATCCTATAC TGACATACAA ATCTCGACCA CATCAAGGAA CTCCTTATAA TCACCAAACC 65602 .......... .......... .......... .......... .......... .......... 335 TATCATGCTT GTGATTCAAG ATATTTGATA TGTTAGTGTG ATTGACTGAT AAGGGCACAT 65662 .......... .......... .......... .......... .......... .......... 335 TAGTTAGTTC ATTGGCTAAT GACATGAGGC TAAGATCCGG CATGACCAAG TGGCAAGATT 65722 .......... .......... .......... .......... .......... .......... 335 AGCGGTTCTT AGTCTCGTTA TTTGGAGGTA GATGGAGGAG ATATAGAAAC CATGTTGACT 65782 .......... .......... .......... .......... .......... .......... 335 CATAAGATTC TATATTTAAT AGCACCGGAA TATTATTATA GTTAGCCTTC TCTCCCATGA 65842 .......... .......... .......... .......... .......... .......... 335 ATTCTCCGTC CAACCAAATT GGATCTGCCT TTGCAAGTCT TTCTGCAGTT TCTGCAAAGT 65902 .......... .......... .......... .......... .......... .......... 335 GTATTTAGAA CTTATGATGA GATGGCCTAC GGTAGAAAAC TCGATGGGTT AGGACAACCC 65962 .......... .......... .......... .......... .......... .......... 335 ATTTTGTGTT ACCAATCCCA GTGGAACTCC CATTACTGGT CTATTAATGG AGGAGTAACA 66022 .......... .......... .......... .......... .......... .......... 335 TCAGCAACTA AAGCTTATCC CCAATTTGTT GAGTATTATC TATAAAGTTG CTTTGTTGTG 66082 .......... .......... .......... .......... .......... .......... 335 TTATATCCTT GCTAAGTCCC AATTGATTAT GTGAGCTTAT ACGTCTTTTC TGAGACAAGT 66142 .......... .......... .......... .......... .......... .......... 335 TTTCTCTTTG TATTTTTAGT CGACCTCATT CCTTTTAGCA CATTCTTTCA TTGTAGTGTA 66202 .......... .......... .......... .......... .......... .......... 335 ATATCCATGG ACCGTAGGTA AGATGTCTAT ACAGGACATA ATCAGTCCTC GATATGCGTT 66262 .......... .......... .......... .......... .......... .......... 335 ACTTGCATCC TCAGTCAGAT GTCTTCGGTT TTGTTCCTCT GTAATATTCA TGTATGTATT 66322 .......... .......... .......... .......... .......... .......... 335 GGTCCATAGA TGGAAGAATG GAGTCAGAAT AGATAATTGC AGTCATAAGC TGCTCCATTG 66382 .......... .......... .......... .......... .......... .......... 335 TTTCTATAAA CAACTGTATC TCCTGGTCTC AGAGATTGGT TAAGATAATC CTTGTCAAAG 66442 .......... .......... .......... .......... .......... .......... 335 ATATTCTGAC CTGGAAATCC AAATGAGGAT ATTCTGAAAT GTACATGCTG CTTTAGCATT 66502 .......... .......... .......... .......... .......... .......... 335 ATGTGAGCTG TGACTTTGCA AATTGTACTT CTTTAGACTT TAGTTTCAAT TGTGTAGTAG 66562 .......... .......... .......... .......... .......... .......... 335 ATGCATATTT CTCATCTTCA CTTGAGTTTA AGAGTGTTTT CCATGCTAAT TCTGGGTGTC 66622 .......... .......... .......... .......... .......... .......... 335 ACCTCATTGC TTGGTGTTTC TTTTTTGAAA ATTGTTTTGA TGAATATGGT TTAGAGTGGT 66682 .......... .......... .......... .......... .......... .......... 335 TGCTTTCCAT AGGCACCCTA GAAGTGCAAA TATAAGAGTT GTTGCTTTCC ATAGGCACCC 66742 .......... .......... .......... .......... .......... .......... 335 TAGAAGTGCA AATAGTTGCA GGAGAAAAAC TCAAATGTCC ACAAAGTTGA GTAACTCAGG 66802 .......... .......... .......... .......... .......... .......... 335 TGAAGTGTCT ATGTGATGTA CATTCAGGGG CGGCTCGACG TAATTGGGAG CCTAAAGAGA 66862 .......... .......... .......... .......... .......... .......... 335 AATTTCAATT GGCGGCCTAA AATATAAATA TACTTCATTT ACGTATTTAT TTAAAAAAAT 66922 .......... .......... .......... .......... .......... .......... 335 TATACTATTA AGATGAAAAT TATTAGTACT TAATATTATT TTTTCAGATA CTAGTTTTAA 66982 .......... .......... .......... .......... .......... .......... 335 GTAAGGCTCA ACATTGAAAA ACATCTTAAG TGAGATAATT ATTATATGTA TTGTTAACAC 67042 .......... .......... .......... .......... .......... .......... 335 AATGATACAA GTAATAAGTT GATAAATATT AAATAAAGAT AAGAGTTAGA ATCATAGAAT 67102 .......... .......... .......... .......... .......... .......... 335 TTGACTCTAA AAGTTGATGA CTTGGTATAA CCTCATTTTA AAATGCTTAG AGTAACGCTT 67162 .......... .......... .......... .......... .......... .......... 335 GAAACTAAAA TTTGAAAAAA ATGAAATAAA ATTGTAATTC ACTTTGTAAC ACTTTTCACT 67222 .......... .......... .......... .......... .......... .......... 335 GTTAATTCTC ATTTTTAACA AAGTACAAAA GATGTTAAAG TGGATAAAAT AATTTGTTTT 67282 .......... .......... .......... .......... .......... .......... 335 TAAATAAATT ATACTTTTTA TCATAAATAA TAAATTTTTT ATAAAAATTT TAACACATAA 67342 .......... .......... .......... .......... .......... .......... 335 TTTATTCTTC ACAAAAAATT TTGGCCCCCG AAATTTGGGG CCTAAGGCGA AGGCCTTATT 67402 .......... .......... .......... .......... .......... .......... 335 ATTTAATGCA TAGAGCAGGC TCTGTGTACA TTAATGACGT TACACCAAAA AGACAAAGTA 67462 .......... .......... .......... .......... .......... .......... 335 CAAACATCTA TATTTAGTTG TTTTTTGTTC TCTTGCAAAA CATGTTACCA CTATACTTTG 67522 .......... .......... .......... .......... .......... .......... 335 TTGTTTTGTC CTCATCAAAT AGTTGTTTTC TGTTCTTGCA TGGGGTGCTG CCGTAACTAC 67582 .......... .......... .......... .......... .......... .......... 335 TGATGATTCA CATGCAGAAT GTTAAAATGT TTGTTGATAT TGTTTTGCAT TCTTTGGTTT 67642 .......... .......... .......... .......... .......... .......... 335 TCTTACATCA TACATGCTAC TCAGTCCATT TCCTCATTGA GTTAAACAAC TGGTTTGAGT 67702 .......... .......... .......... .......... .......... .......... 335 GAATTTTCTC AATGTTTACT TTTAAATGCA ATGCTACTCT TTGCATTTAC ATATGAGCAT 67762 .......... .......... .......... .......... .......... .......... 335 GTTACGGGGT TTAGCGAAGT GCATATAATG CTATACAATG TGACCACCTA TTTGTTTGTG 67822 .......... .......... .......... .......... .......... .......... 335 GTTCTTGCAT GCGCATGCTA TGTTCATCTG TTTATTACTC AAGCAAAATT AATGTTGCTT 67882 .......... .......... .......... .......... .......... .......... 335 CTAGATGCTT AATGAGGTTG GGGTTTCGTA CCTGGAGTTG CTTTTTTAGT TCCTGAATTA 67942 .......... .......... .......... .......... .......... .......... 335 ACTTCTTTAG TTCAATTATG TCTTAAAATG TCATTTTGAT TACCACTGTT ATATGTTTCT 68002 .......... .......... .......... .......... .......... .......... 335 GGTGTACTAT AGATTGGTTA CATAGTTTTT TGACACACAT ATATGTATAT CAGAGAATAC 68062 ||||||| .......... .......... .......... .......... .......... ...AGAATAC 342 AATATGCAAA GACGAAATCT GATGTTGTAG CAAAAGCCGA TGGTACTTTT GTTCCCCGAG 68122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGCAAA GACGAAATCT GATGTTGTAG CAAAAGCCGA TGGTACTTTT GTTCCCCGAG 402 AAAAAAGAAA GAGGCACGAG GATAAAGGTA AGTTCTTTCA TTTGAAAATT TTCTAGTTCC 68182 |||||||||| |||||||||| ||||||| AAAAAAGAAA GAGGCACGAG GATAAAG... .......... .......... .......... 429 ACTATTCGTT TGAATCCCTA GAGAAGGCTG GACTATACAT CTAAGACATG TCATTTCATA 68242 .......... .......... .......... .......... .......... .......... 429 AAGTTTGCTA CATACTGTTT GCTATAAGCT ACATATAATA ATGGGCAGAC AAATTTTACC 68302 .......... .......... .......... .......... .......... .......... 429 CGTCAACTTC TGTACTTGTG ATTAGCTCCC CCCCCCCCCC CCCCCTCCCC CCTTCCTTTC 68362 .......... .......... .......... .......... .......... .......... 429 GTACGACCCA ACCACATCCC TAAATAAAAA AGTAGTGGAA GTACAATTAC TTGACTATTG 68422 .......... .......... .......... .......... .......... .......... 429 CAATATTTTT AGCTATTCAT TTACTGTGAT CCAGCAGGGA GAAAGAAGAA GGACCAGCAA 68482 ||| |||||||||| |||||||||| .......... .......... .......... .......GGA GAAAGAAGAA GGACCAGCAA 452 GATGCTAATC AAGCTGGAAT GGGCCGGAAT CCTGCATATG CTGGTGCTTA TGGTGCAGCA 68542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTAATC AAGCTGGAAT GGGCCGGAAT CCTGCATATG CTGGTGCTTA TGGTGCAGCA 512 CCTCCTGTAA GCATTTTCCC TTCTTTTCAG AAACTTTGTT TAGTTTCCTG TTTTCTGCGT 68602 |||||| CCTCCT.... .......... .......... .......... .......... .......... 518 CATATATTGA ATTAATGGGA TTGTATCATC TCTTTTCCTG TCACCACACT ATACGAAGTT 68662 .......... .......... .......... .......... .......... .......... 518 TATCAGATGA TGTGATTTTG ATTTCGTTTT GAAAGATGTA ATCTGATTTT CCTATTAAGC 68722 .......... .......... .......... .......... .......... .......... 518 ACACTAACAC ATTTCTTGGG GTGAAATGAA AACGGGAGCA ATACTTGAAA ATGATCCATG 68782 .......... .......... .......... .......... .......... .......... 518 TTGCATGGAT AGTAGAAGTT ATGTAGTTAA GAGTTAGAAG TTTGTTGCTG GGTTCTTGAT 68842 .......... .......... .......... .......... .......... .......... 518 TAGTTTGTGA TTTGTCTCTC ATTTTGGTGA AATCTTGATG TATTGAGTTA CACCCTTCTA 68902 .......... .......... .......... .......... .......... .......... 518 ATGCATAGAG GTTTAAAATG TAGTCAATTA GTGCTTAATT GTGATTTTCT TAGATGCTTT 68962 .......... .......... .......... .......... .......... .......... 518 TACCAGAAAC TTCCTCAAAT GTAATTGTTT CCCCTTCTCC ACTTGTTGCA GTTCTCACAA 69022 ||||||||| .......... .......... .......... .......... .......... .TTCTCACAA 527 ATACCATACA TGGGT 69037 |||||||||| ||||| ATACCATACA TGGGT 542 hqPGS_C09HBa0278J12.1+_SGN-E251243+ (63923 64084,64183 64355,68056 68149,68460 68548,69014 69037) ******************************************************************************** EST sequence 147 +strand 514 n (File: SGN-E311900+) 1 TTGCAGCTAG GCGTAGACGA GCAGCCATGG CGGAGGCGAA CCAAAATACG AACCCGAATC 61 CGGCCCCTAG CGGCGGCGAA GTTCCACCAA ATGTGACTAT TTACATCAAT AACCTCAATG 121 AAAAAATTAA GCTTGAAGAG CTGAAGAAAT CGATGCACGC TGTGTTCTCA CAGTTTGGTA 181 AGATACTGGA GGTTTTAGCA TTCAAAACCC TAAAGCATAA AGGACAGGCG TGGGTAGTGT 241 TTGATGAAGT TTCTTCTGCT AGCAATGCAC TTCGCCAGAT GCAGGGTTTT CCTTTCTATG 301 ATAAGCCTAT GAGAATACAA TATGCAAAGA CGAAATCTGA TGTTGTAGCA AAAGCCGATG 361 GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA TAAAGGGAGA AAGAAGAAGG 421 ACCAGCAAGA TGCTAATCAA GCTGGAATGG GCCGGAATCC TGCATATGCT GGTGCTTATG 481 GTGCAGCACC TCCTTTCTCA CAAATACCAT ACAT Predicted gene structure (within gDNA segment 63347 to 69358): Exon 1 63947 64084 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 139 311 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 312 405 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 406 494 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 0) Exon 5 69014 69033 ( 20 n); cDNA 495 514 ( 20 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E311900+ 1.000 514 1.000 C PGS_C09HBa0278J12.1+_SGN-E311900+ (63947 64084,64183 64355,68056 68149,68460 68548,69014 69033) Alignment (genomic DNA sequence = upper lines): TTGCAGCTAG GCGTAGACGA GCAGCCATGG CGGAGGCGAA CCAAAATACG AACCCGAATC 64006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAGCTAG GCGTAGACGA GCAGCCATGG CGGAGGCGAA CCAAAATACG AACCCGAATC 60 CGGCCCCTAG CGGCGGCGAA GTTCCACCAA ATGTGACTAT TTACATCAAT AACCTCAATG 64066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCCCCTAG CGGCGGCGAA GTTCCACCAA ATGTGACTAT TTACATCAAT AACCTCAATG 120 AAAAAATTAA GCTTGAAGGT ACTCCGTACT TGTCTCGAAT GTTTATGCAG AACATTATCT 64126 |||||||||| |||||||| AAAAAATTAA GCTTGAAG.. .......... .......... .......... .......... 138 TTGTGTTTCA CTGTTTGTAA AATGTGTTGT GTATATTGAT GGTGATTAAA TTGTAGAGCT 64186 |||| .......... .......... .......... .......... .......... ......AGCT 142 GAAGAAATCG ATGCACGCTG TGTTCTCACA GTTTGGTAAG ATACTGGAGG TTTTAGCATT 64246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAATCG ATGCACGCTG TGTTCTCACA GTTTGGTAAG ATACTGGAGG TTTTAGCATT 202 CAAAACCCTA AAGCATAAAG GACAGGCGTG GGTAGTGTTT GATGAAGTTT CTTCTGCTAG 64306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAACCCTA AAGCATAAAG GACAGGCGTG GGTAGTGTTT GATGAAGTTT CTTCTGCTAG 262 CAATGCACTT CGCCAGATGC AGGGTTTTCC TTTCTATGAT AAGCCTATGG TACTCATTTC 64366 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAATGCACTT CGCCAGATGC AGGGTTTTCC TTTCTATGAT AAGCCTATG. .......... 311 CATTGTTTTT GTATTCTTCA CTACTGGATT CTGGCTTGTT ACTGTTGCAA TATGCTTACT 64426 .......... .......... .......... .......... .......... .......... 311 GCAATTTCTA CTTCATTGAC ACAAAATATA TTCAGCTTTA CTATCAATCC ATCAACTGTA 64486 .......... .......... .......... .......... .......... .......... 311 CCTCTCAAAC TATCGAGGTT CAGCTATATG TAGGTTTATA TTGATTGGTT TATCGTAATT 64546 .......... .......... .......... .......... .......... .......... 311 TAGTATTTTT ATGCTGGCTG TGAATCCCCT TAATCTCCAT GCTTCGTCTT TATATGGGCT 64606 .......... .......... .......... .......... .......... .......... 311 TGGTACTGGA TATGGTGCCT GAGCATAGGT GGAGCTGAAG AAATTAAGTT TATTTTCCTG 64666 .......... .......... .......... .......... .......... .......... 311 AAAAAATTAA TGATCTGTAG GAAAGGTATC ATACCATATT TGTTCGATTA GTGATCCTAG 64726 .......... .......... .......... .......... .......... .......... 311 AACATATTAA TTGCTCAAGC ATTTAGGCAT CTTACCTATG CTTAATTAGA GAATACTATT 64786 .......... .......... .......... .......... .......... .......... 311 ATTCATAGTC AAACTTAGTG CTCCCACTGG TTGAGTTTAT GTGTCACAAT TTGACTCAAA 64846 .......... .......... .......... .......... .......... .......... 311 ACTAAGTTTA AGAAAGAAAT AAAGACTTAT GAAACTTATA GACTTAAATA TGCAAAAACA 64906 .......... .......... .......... .......... .......... .......... 311 TTTGTCACTG TAAGACTTCT GAAACTTTTA ATCTTAAACA TGTCATATCA ATTTTGTGTC 64966 .......... .......... .......... .......... .......... .......... 311 TCTATGAAGT TGTTATCAAG AGTGAATGGG AGAATTTGTT ATCACACTGT CAGTCTTGGG 65026 .......... .......... .......... .......... .......... .......... 311 ATGTGATGCA TATCAGAAGT AAAGCTGTTA GGACTTAGGA GTAAGGATGA GTGTTCTTGA 65086 .......... .......... .......... .......... .......... .......... 311 GGTCTTCAAA CTAGTAGCCC TATATGGAAA GAAGAACTGA ACTGCTTTTG GCATTTTTAT 65146 .......... .......... .......... .......... .......... .......... 311 TTAAGCAAAC TACTAGATGA GCTTAATTGA AGAGATATGT TCAATGATGA TTCATATAGT 65206 .......... .......... .......... .......... .......... .......... 311 CAATTGCAAC TTCCTTGGGA TTGGATTCTT TTCATAACCC CAATACATGT TGTATGCATT 65266 .......... .......... .......... .......... .......... .......... 311 ACTAGAATAG CATGATAAAA ATCAAAGACT ATATCCAACT TGAAGCAATC TTGATTGTTC 65326 .......... .......... .......... .......... .......... .......... 311 CCTCATTGCT TCTCAAAGGA GTTGGAGCAT GTTTGTCGTA ATCCAGCAAA CAACTATACA 65386 .......... .......... .......... .......... .......... .......... 311 AAATTTATCA AGCATAGAAT GTTGTCTCAA TCCTCAATAT TTGGGATTGG CTACGCGTGT 65446 .......... .......... .......... .......... .......... .......... 311 CCTTTACATT TCCGCTTTAT TTAAGTTTCT AATAACTTAA ATAATTTGTT TTTGAAGGAT 65506 .......... .......... .......... .......... .......... .......... 311 AGTTTGGCTA AAACTAGATC TTTTGTATAT TACAATTATC CTATACTGAC ATACAAATCT 65566 .......... .......... .......... .......... .......... .......... 311 CGACCACATC AAGGAACTCC TTATAATCAC CAAACCTATC ATGCTTGTGA TTCAAGATAT 65626 .......... .......... .......... .......... .......... .......... 311 TTGATATGTT AGTGTGATTG ACTGATAAGG GCACATTAGT TAGTTCATTG GCTAATGACA 65686 .......... .......... .......... .......... .......... .......... 311 TGAGGCTAAG ATCCGGCATG ACCAAGTGGC AAGATTAGCG GTTCTTAGTC TCGTTATTTG 65746 .......... .......... .......... .......... .......... .......... 311 GAGGTAGATG GAGGAGATAT AGAAACCATG TTGACTCATA AGATTCTATA TTTAATAGCA 65806 .......... .......... .......... .......... .......... .......... 311 CCGGAATATT ATTATAGTTA GCCTTCTCTC CCATGAATTC TCCGTCCAAC CAAATTGGAT 65866 .......... .......... .......... .......... .......... .......... 311 CTGCCTTTGC AAGTCTTTCT GCAGTTTCTG CAAAGTGTAT TTAGAACTTA TGATGAGATG 65926 .......... .......... .......... .......... .......... .......... 311 GCCTACGGTA GAAAACTCGA TGGGTTAGGA CAACCCATTT TGTGTTACCA ATCCCAGTGG 65986 .......... .......... .......... .......... .......... .......... 311 AACTCCCATT ACTGGTCTAT TAATGGAGGA GTAACATCAG CAACTAAAGC TTATCCCCAA 66046 .......... .......... .......... .......... .......... .......... 311 TTTGTTGAGT ATTATCTATA AAGTTGCTTT GTTGTGTTAT ATCCTTGCTA AGTCCCAATT 66106 .......... .......... .......... .......... .......... .......... 311 GATTATGTGA GCTTATACGT CTTTTCTGAG ACAAGTTTTC TCTTTGTATT TTTAGTCGAC 66166 .......... .......... .......... .......... .......... .......... 311 CTCATTCCTT TTAGCACATT CTTTCATTGT AGTGTAATAT CCATGGACCG TAGGTAAGAT 66226 .......... .......... .......... .......... .......... .......... 311 GTCTATACAG GACATAATCA GTCCTCGATA TGCGTTACTT GCATCCTCAG TCAGATGTCT 66286 .......... .......... .......... .......... .......... .......... 311 TCGGTTTTGT TCCTCTGTAA TATTCATGTA TGTATTGGTC CATAGATGGA AGAATGGAGT 66346 .......... .......... .......... .......... .......... .......... 311 CAGAATAGAT AATTGCAGTC ATAAGCTGCT CCATTGTTTC TATAAACAAC TGTATCTCCT 66406 .......... .......... .......... .......... .......... .......... 311 GGTCTCAGAG ATTGGTTAAG ATAATCCTTG TCAAAGATAT TCTGACCTGG AAATCCAAAT 66466 .......... .......... .......... .......... .......... .......... 311 GAGGATATTC TGAAATGTAC ATGCTGCTTT AGCATTATGT GAGCTGTGAC TTTGCAAATT 66526 .......... .......... .......... .......... .......... .......... 311 GTACTTCTTT AGACTTTAGT TTCAATTGTG TAGTAGATGC ATATTTCTCA TCTTCACTTG 66586 .......... .......... .......... .......... .......... .......... 311 AGTTTAAGAG TGTTTTCCAT GCTAATTCTG GGTGTCACCT CATTGCTTGG TGTTTCTTTT 66646 .......... .......... .......... .......... .......... .......... 311 TTGAAAATTG TTTTGATGAA TATGGTTTAG AGTGGTTGCT TTCCATAGGC ACCCTAGAAG 66706 .......... .......... .......... .......... .......... .......... 311 TGCAAATATA AGAGTTGTTG CTTTCCATAG GCACCCTAGA AGTGCAAATA GTTGCAGGAG 66766 .......... .......... .......... .......... .......... .......... 311 AAAAACTCAA ATGTCCACAA AGTTGAGTAA CTCAGGTGAA GTGTCTATGT GATGTACATT 66826 .......... .......... .......... .......... .......... .......... 311 CAGGGGCGGC TCGACGTAAT TGGGAGCCTA AAGAGAAATT TCAATTGGCG GCCTAAAATA 66886 .......... .......... .......... .......... .......... .......... 311 TAAATATACT TCATTTACGT ATTTATTTAA AAAAATTATA CTATTAAGAT GAAAATTATT 66946 .......... .......... .......... .......... .......... .......... 311 AGTACTTAAT ATTATTTTTT CAGATACTAG TTTTAAGTAA GGCTCAACAT TGAAAAACAT 67006 .......... .......... .......... .......... .......... .......... 311 CTTAAGTGAG ATAATTATTA TATGTATTGT TAACACAATG ATACAAGTAA TAAGTTGATA 67066 .......... .......... .......... .......... .......... .......... 311 AATATTAAAT AAAGATAAGA GTTAGAATCA TAGAATTTGA CTCTAAAAGT TGATGACTTG 67126 .......... .......... .......... .......... .......... .......... 311 GTATAACCTC ATTTTAAAAT GCTTAGAGTA ACGCTTGAAA CTAAAATTTG AAAAAAATGA 67186 .......... .......... .......... .......... .......... .......... 311 AATAAAATTG TAATTCACTT TGTAACACTT TTCACTGTTA ATTCTCATTT TTAACAAAGT 67246 .......... .......... .......... .......... .......... .......... 311 ACAAAAGATG TTAAAGTGGA TAAAATAATT TGTTTTTAAA TAAATTATAC TTTTTATCAT 67306 .......... .......... .......... .......... .......... .......... 311 AAATAATAAA TTTTTTATAA AAATTTTAAC ACATAATTTA TTCTTCACAA AAAATTTTGG 67366 .......... .......... .......... .......... .......... .......... 311 CCCCCGAAAT TTGGGGCCTA AGGCGAAGGC CTTATTATTT AATGCATAGA GCAGGCTCTG 67426 .......... .......... .......... .......... .......... .......... 311 TGTACATTAA TGACGTTACA CCAAAAAGAC AAAGTACAAA CATCTATATT TAGTTGTTTT 67486 .......... .......... .......... .......... .......... .......... 311 TTGTTCTCTT GCAAAACATG TTACCACTAT ACTTTGTTGT TTTGTCCTCA TCAAATAGTT 67546 .......... .......... .......... .......... .......... .......... 311 GTTTTCTGTT CTTGCATGGG GTGCTGCCGT AACTACTGAT GATTCACATG CAGAATGTTA 67606 .......... .......... .......... .......... .......... .......... 311 AAATGTTTGT TGATATTGTT TTGCATTCTT TGGTTTTCTT ACATCATACA TGCTACTCAG 67666 .......... .......... .......... .......... .......... .......... 311 TCCATTTCCT CATTGAGTTA AACAACTGGT TTGAGTGAAT TTTCTCAATG TTTACTTTTA 67726 .......... .......... .......... .......... .......... .......... 311 AATGCAATGC TACTCTTTGC ATTTACATAT GAGCATGTTA CGGGGTTTAG CGAAGTGCAT 67786 .......... .......... .......... .......... .......... .......... 311 ATAATGCTAT ACAATGTGAC CACCTATTTG TTTGTGGTTC TTGCATGCGC ATGCTATGTT 67846 .......... .......... .......... .......... .......... .......... 311 CATCTGTTTA TTACTCAAGC AAAATTAATG TTGCTTCTAG ATGCTTAATG AGGTTGGGGT 67906 .......... .......... .......... .......... .......... .......... 311 TTCGTACCTG GAGTTGCTTT TTTAGTTCCT GAATTAACTT CTTTAGTTCA ATTATGTCTT 67966 .......... .......... .......... .......... .......... .......... 311 AAAATGTCAT TTTGATTACC ACTGTTATAT GTTTCTGGTG TACTATAGAT TGGTTACATA 68026 .......... .......... .......... .......... .......... .......... 311 GTTTTTTGAC ACACATATAT GTATATCAGA GAATACAATA TGCAAAGACG AAATCTGATG 68086 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GAATACAATA TGCAAAGACG AAATCTGATG 342 TTGTAGCAAA AGCCGATGGT ACTTTTGTTC CCCGAGAAAA AAGAAAGAGG CACGAGGATA 68146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGCAAA AGCCGATGGT ACTTTTGTTC CCCGAGAAAA AAGAAAGAGG CACGAGGATA 402 AAGGTAAGTT CTTTCATTTG AAAATTTTCT AGTTCCACTA TTCGTTTGAA TCCCTAGAGA 68206 ||| AAG....... .......... .......... .......... .......... .......... 405 AGGCTGGACT ATACATCTAA GACATGTCAT TTCATAAAGT TTGCTACATA CTGTTTGCTA 68266 .......... .......... .......... .......... .......... .......... 405 TAAGCTACAT ATAATAATGG GCAGACAAAT TTTACCCGTC AACTTCTGTA CTTGTGATTA 68326 .......... .......... .......... .......... .......... .......... 405 GCTCCCCCCC CCCCCCCCCC CTCCCCCCTT CCTTTCGTAC GACCCAACCA CATCCCTAAA 68386 .......... .......... .......... .......... .......... .......... 405 TAAAAAAGTA GTGGAAGTAC AATTACTTGA CTATTGCAAT ATTTTTAGCT ATTCATTTAC 68446 .......... .......... .......... .......... .......... .......... 405 TGTGATCCAG CAGGGAGAAA GAAGAAGGAC CAGCAAGATG CTAATCAAGC TGGAATGGGC 68506 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGAGAAA GAAGAAGGAC CAGCAAGATG CTAATCAAGC TGGAATGGGC 452 CGGAATCCTG CATATGCTGG TGCTTATGGT GCAGCACCTC CTGTAAGCAT TTTCCCTTCT 68566 |||||||||| |||||||||| |||||||||| |||||||||| || CGGAATCCTG CATATGCTGG TGCTTATGGT GCAGCACCTC CT........ .......... 494 TTTCAGAAAC TTTGTTTAGT TTCCTGTTTT CTGCGTCATA TATTGAATTA ATGGGATTGT 68626 .......... .......... .......... .......... .......... .......... 494 ATCATCTCTT TTCCTGTCAC CACACTATAC GAAGTTTATC AGATGATGTG ATTTTGATTT 68686 .......... .......... .......... .......... .......... .......... 494 CGTTTTGAAA GATGTAATCT GATTTTCCTA TTAAGCACAC TAACACATTT CTTGGGGTGA 68746 .......... .......... .......... .......... .......... .......... 494 AATGAAAACG GGAGCAATAC TTGAAAATGA TCCATGTTGC ATGGATAGTA GAAGTTATGT 68806 .......... .......... .......... .......... .......... .......... 494 AGTTAAGAGT TAGAAGTTTG TTGCTGGGTT CTTGATTAGT TTGTGATTTG TCTCTCATTT 68866 .......... .......... .......... .......... .......... .......... 494 TGGTGAAATC TTGATGTATT GAGTTACACC CTTCTAATGC ATAGAGGTTT AAAATGTAGT 68926 .......... .......... .......... .......... .......... .......... 494 CAATTAGTGC TTAATTGTGA TTTTCTTAGA TGCTTTTACC AGAAACTTCC TCAAATGTAA 68986 .......... .......... .......... .......... .......... .......... 494 TTGTTTCCCC TTCTCCACTT GTTGCAGTTC TCACAAATAC CATACAT 69033 ||| |||||||||| ||||||| .......... .......... .......TTC TCACAAATAC CATACAT 514 hqPGS_C09HBa0278J12.1+_SGN-E311900+ (63947 64084,64183 64355,68056 68149,68460 68548) ******************************************************************************** EST sequence 134 +strand 570 n (File: SGN-E369720+) 1 TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 61 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 121 AAAAATTAAG CTTGAAGAGC TGAAGAAATC GATGCACGCT GTGTTCTCAC AGTTTGGTAA 181 GATACTGGAG GTTTTAGCAT TCAAAACCCT AAAGCATAAA GGACAGGCGT GGGTAGTGTT 241 TGATGAAGTT TCTTCTGCTA GCAATGCACT TCGCCAGATG CAGGGTTTTC CTTTCTATGA 301 TAAGCCTATG AGAATACAAT ATGCAAAGAC GAAATCTGAT GTTGTAGCAA AAGCCGATGG 361 TACTTTTGTT CCCCGAGAAA AAAGAAAGAG GCACGAGGAT AAAGGGAGAA AGAAGAAGGA 421 CCAGCAAGAT GCTAATCAAG CTGGAATGGG CCGGAATCCT GCATATGCTG GTGCTTATGG 481 TGCAGCACCT CCTTTCTCAC AAATACCATA CATGGGTGGA GCTAAAGCTG TAGTACCGGA 541 TGCTCCTGCT TCGTCAATAG CATATTTGTT Predicted gene structure (within gDNA segment 63348 to 70060): Exon 1 63948 64084 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 138 310 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 311 404 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 405 493 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 0.96) Exon 5 69014 69091 ( 78 n); cDNA 494 570 ( 77 n); score: 0.910 MATCH C09HBa0278J12.1+ SGN-E369720+ 0.988 571 1.002 C PGS_C09HBa0278J12.1+_SGN-E369720+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69091) Alignment (genomic DNA sequence = upper lines): TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 64007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 60 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 64067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 120 AAAAATTAAG CTTGAAGGTA CTCCGTACTT GTCTCGAATG TTTATGCAGA ACATTATCTT 64127 |||||||||| ||||||| AAAAATTAAG CTTGAAG... .......... .......... .......... .......... 137 TGTGTTTCAC TGTTTGTAAA ATGTGTTGTG TATATTGATG GTGATTAAAT TGTAGAGCTG 64187 ||||| .......... .......... .......... .......... .......... .....AGCTG 142 AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 64247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 202 AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 64307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 262 AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATGGT ACTCATTTCC 64367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATG.. .......... 310 ATTGTTTTTG TATTCTTCAC TACTGGATTC TGGCTTGTTA CTGTTGCAAT ATGCTTACTG 64427 .......... .......... .......... .......... .......... .......... 310 CAATTTCTAC TTCATTGACA CAAAATATAT TCAGCTTTAC TATCAATCCA TCAACTGTAC 64487 .......... .......... .......... .......... .......... .......... 310 CTCTCAAACT ATCGAGGTTC AGCTATATGT AGGTTTATAT TGATTGGTTT ATCGTAATTT 64547 .......... .......... .......... .......... .......... .......... 310 AGTATTTTTA TGCTGGCTGT GAATCCCCTT AATCTCCATG CTTCGTCTTT ATATGGGCTT 64607 .......... .......... .......... .......... .......... .......... 310 GGTACTGGAT ATGGTGCCTG AGCATAGGTG GAGCTGAAGA AATTAAGTTT ATTTTCCTGA 64667 .......... .......... .......... .......... .......... .......... 310 AAAAATTAAT GATCTGTAGG AAAGGTATCA TACCATATTT GTTCGATTAG TGATCCTAGA 64727 .......... .......... .......... .......... .......... .......... 310 ACATATTAAT TGCTCAAGCA TTTAGGCATC TTACCTATGC TTAATTAGAG AATACTATTA 64787 .......... .......... .......... .......... .......... .......... 310 TTCATAGTCA AACTTAGTGC TCCCACTGGT TGAGTTTATG TGTCACAATT TGACTCAAAA 64847 .......... .......... .......... .......... .......... .......... 310 CTAAGTTTAA GAAAGAAATA AAGACTTATG AAACTTATAG ACTTAAATAT GCAAAAACAT 64907 .......... .......... .......... .......... .......... .......... 310 TTGTCACTGT AAGACTTCTG AAACTTTTAA TCTTAAACAT GTCATATCAA TTTTGTGTCT 64967 .......... .......... .......... .......... .......... .......... 310 CTATGAAGTT GTTATCAAGA GTGAATGGGA GAATTTGTTA TCACACTGTC AGTCTTGGGA 65027 .......... .......... .......... .......... .......... .......... 310 TGTGATGCAT ATCAGAAGTA AAGCTGTTAG GACTTAGGAG TAAGGATGAG TGTTCTTGAG 65087 .......... .......... .......... .......... .......... .......... 310 GTCTTCAAAC TAGTAGCCCT ATATGGAAAG AAGAACTGAA CTGCTTTTGG CATTTTTATT 65147 .......... .......... .......... .......... .......... .......... 310 TAAGCAAACT ACTAGATGAG CTTAATTGAA GAGATATGTT CAATGATGAT TCATATAGTC 65207 .......... .......... .......... .......... .......... .......... 310 AATTGCAACT TCCTTGGGAT TGGATTCTTT TCATAACCCC AATACATGTT GTATGCATTA 65267 .......... .......... .......... .......... .......... .......... 310 CTAGAATAGC ATGATAAAAA TCAAAGACTA TATCCAACTT GAAGCAATCT TGATTGTTCC 65327 .......... .......... .......... .......... .......... .......... 310 CTCATTGCTT CTCAAAGGAG TTGGAGCATG TTTGTCGTAA TCCAGCAAAC AACTATACAA 65387 .......... .......... .......... .......... .......... .......... 310 AATTTATCAA GCATAGAATG TTGTCTCAAT CCTCAATATT TGGGATTGGC TACGCGTGTC 65447 .......... .......... .......... .......... .......... .......... 310 CTTTACATTT CCGCTTTATT TAAGTTTCTA ATAACTTAAA TAATTTGTTT TTGAAGGATA 65507 .......... .......... .......... .......... .......... .......... 310 GTTTGGCTAA AACTAGATCT TTTGTATATT ACAATTATCC TATACTGACA TACAAATCTC 65567 .......... .......... .......... .......... .......... .......... 310 GACCACATCA AGGAACTCCT TATAATCACC AAACCTATCA TGCTTGTGAT TCAAGATATT 65627 .......... .......... .......... .......... .......... .......... 310 TGATATGTTA GTGTGATTGA CTGATAAGGG CACATTAGTT AGTTCATTGG CTAATGACAT 65687 .......... .......... .......... .......... .......... .......... 310 GAGGCTAAGA TCCGGCATGA CCAAGTGGCA AGATTAGCGG TTCTTAGTCT CGTTATTTGG 65747 .......... .......... .......... .......... .......... .......... 310 AGGTAGATGG AGGAGATATA GAAACCATGT TGACTCATAA GATTCTATAT TTAATAGCAC 65807 .......... .......... .......... .......... .......... .......... 310 CGGAATATTA TTATAGTTAG CCTTCTCTCC CATGAATTCT CCGTCCAACC AAATTGGATC 65867 .......... .......... .......... .......... .......... .......... 310 TGCCTTTGCA AGTCTTTCTG CAGTTTCTGC AAAGTGTATT TAGAACTTAT GATGAGATGG 65927 .......... .......... .......... .......... .......... .......... 310 CCTACGGTAG AAAACTCGAT GGGTTAGGAC AACCCATTTT GTGTTACCAA TCCCAGTGGA 65987 .......... .......... .......... .......... .......... .......... 310 ACTCCCATTA CTGGTCTATT AATGGAGGAG TAACATCAGC AACTAAAGCT TATCCCCAAT 66047 .......... .......... .......... .......... .......... .......... 310 TTGTTGAGTA TTATCTATAA AGTTGCTTTG TTGTGTTATA TCCTTGCTAA GTCCCAATTG 66107 .......... .......... .......... .......... .......... .......... 310 ATTATGTGAG CTTATACGTC TTTTCTGAGA CAAGTTTTCT CTTTGTATTT TTAGTCGACC 66167 .......... .......... .......... .......... .......... .......... 310 TCATTCCTTT TAGCACATTC TTTCATTGTA GTGTAATATC CATGGACCGT AGGTAAGATG 66227 .......... .......... .......... .......... .......... .......... 310 TCTATACAGG ACATAATCAG TCCTCGATAT GCGTTACTTG CATCCTCAGT CAGATGTCTT 66287 .......... .......... .......... .......... .......... .......... 310 CGGTTTTGTT CCTCTGTAAT ATTCATGTAT GTATTGGTCC ATAGATGGAA GAATGGAGTC 66347 .......... .......... .......... .......... .......... .......... 310 AGAATAGATA ATTGCAGTCA TAAGCTGCTC CATTGTTTCT ATAAACAACT GTATCTCCTG 66407 .......... .......... .......... .......... .......... .......... 310 GTCTCAGAGA TTGGTTAAGA TAATCCTTGT CAAAGATATT CTGACCTGGA AATCCAAATG 66467 .......... .......... .......... .......... .......... .......... 310 AGGATATTCT GAAATGTACA TGCTGCTTTA GCATTATGTG AGCTGTGACT TTGCAAATTG 66527 .......... .......... .......... .......... .......... .......... 310 TACTTCTTTA GACTTTAGTT TCAATTGTGT AGTAGATGCA TATTTCTCAT CTTCACTTGA 66587 .......... .......... .......... .......... .......... .......... 310 GTTTAAGAGT GTTTTCCATG CTAATTCTGG GTGTCACCTC ATTGCTTGGT GTTTCTTTTT 66647 .......... .......... .......... .......... .......... .......... 310 TGAAAATTGT TTTGATGAAT ATGGTTTAGA GTGGTTGCTT TCCATAGGCA CCCTAGAAGT 66707 .......... .......... .......... .......... .......... .......... 310 GCAAATATAA GAGTTGTTGC TTTCCATAGG CACCCTAGAA GTGCAAATAG TTGCAGGAGA 66767 .......... .......... .......... .......... .......... .......... 310 AAAACTCAAA TGTCCACAAA GTTGAGTAAC TCAGGTGAAG TGTCTATGTG ATGTACATTC 66827 .......... .......... .......... .......... .......... .......... 310 AGGGGCGGCT CGACGTAATT GGGAGCCTAA AGAGAAATTT CAATTGGCGG CCTAAAATAT 66887 .......... .......... .......... .......... .......... .......... 310 AAATATACTT CATTTACGTA TTTATTTAAA AAAATTATAC TATTAAGATG AAAATTATTA 66947 .......... .......... .......... .......... .......... .......... 310 GTACTTAATA TTATTTTTTC AGATACTAGT TTTAAGTAAG GCTCAACATT GAAAAACATC 67007 .......... .......... .......... .......... .......... .......... 310 TTAAGTGAGA TAATTATTAT ATGTATTGTT AACACAATGA TACAAGTAAT AAGTTGATAA 67067 .......... .......... .......... .......... .......... .......... 310 ATATTAAATA AAGATAAGAG TTAGAATCAT AGAATTTGAC TCTAAAAGTT GATGACTTGG 67127 .......... .......... .......... .......... .......... .......... 310 TATAACCTCA TTTTAAAATG CTTAGAGTAA CGCTTGAAAC TAAAATTTGA AAAAAATGAA 67187 .......... .......... .......... .......... .......... .......... 310 ATAAAATTGT AATTCACTTT GTAACACTTT TCACTGTTAA TTCTCATTTT TAACAAAGTA 67247 .......... .......... .......... .......... .......... .......... 310 CAAAAGATGT TAAAGTGGAT AAAATAATTT GTTTTTAAAT AAATTATACT TTTTATCATA 67307 .......... .......... .......... .......... .......... .......... 310 AATAATAAAT TTTTTATAAA AATTTTAACA CATAATTTAT TCTTCACAAA AAATTTTGGC 67367 .......... .......... .......... .......... .......... .......... 310 CCCCGAAATT TGGGGCCTAA GGCGAAGGCC TTATTATTTA ATGCATAGAG CAGGCTCTGT 67427 .......... .......... .......... .......... .......... .......... 310 GTACATTAAT GACGTTACAC CAAAAAGACA AAGTACAAAC ATCTATATTT AGTTGTTTTT 67487 .......... .......... .......... .......... .......... .......... 310 TGTTCTCTTG CAAAACATGT TACCACTATA CTTTGTTGTT TTGTCCTCAT CAAATAGTTG 67547 .......... .......... .......... .......... .......... .......... 310 TTTTCTGTTC TTGCATGGGG TGCTGCCGTA ACTACTGATG ATTCACATGC AGAATGTTAA 67607 .......... .......... .......... .......... .......... .......... 310 AATGTTTGTT GATATTGTTT TGCATTCTTT GGTTTTCTTA CATCATACAT GCTACTCAGT 67667 .......... .......... .......... .......... .......... .......... 310 CCATTTCCTC ATTGAGTTAA ACAACTGGTT TGAGTGAATT TTCTCAATGT TTACTTTTAA 67727 .......... .......... .......... .......... .......... .......... 310 ATGCAATGCT ACTCTTTGCA TTTACATATG AGCATGTTAC GGGGTTTAGC GAAGTGCATA 67787 .......... .......... .......... .......... .......... .......... 310 TAATGCTATA CAATGTGACC ACCTATTTGT TTGTGGTTCT TGCATGCGCA TGCTATGTTC 67847 .......... .......... .......... .......... .......... .......... 310 ATCTGTTTAT TACTCAAGCA AAATTAATGT TGCTTCTAGA TGCTTAATGA GGTTGGGGTT 67907 .......... .......... .......... .......... .......... .......... 310 TCGTACCTGG AGTTGCTTTT TTAGTTCCTG AATTAACTTC TTTAGTTCAA TTATGTCTTA 67967 .......... .......... .......... .......... .......... .......... 310 AAATGTCATT TTGATTACCA CTGTTATATG TTTCTGGTGT ACTATAGATT GGTTACATAG 68027 .......... .......... .......... .......... .......... .......... 310 TTTTTTGACA CACATATATG TATATCAGAG AATACAATAT GCAAAGACGA AATCTGATGT 68087 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG AATACAATAT GCAAAGACGA AATCTGATGT 342 TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 68147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 402 AGGTAAGTTC TTTCATTTGA AAATTTTCTA GTTCCACTAT TCGTTTGAAT CCCTAGAGAA 68207 || AG........ .......... .......... .......... .......... .......... 404 GGCTGGACTA TACATCTAAG ACATGTCATT TCATAAAGTT TGCTACATAC TGTTTGCTAT 68267 .......... .......... .......... .......... .......... .......... 404 AAGCTACATA TAATAATGGG CAGACAAATT TTACCCGTCA ACTTCTGTAC TTGTGATTAG 68327 .......... .......... .......... .......... .......... .......... 404 CTCCCCCCCC CCCCCCCCCC TCCCCCCTTC CTTTCGTACG ACCCAACCAC ATCCCTAAAT 68387 .......... .......... .......... .......... .......... .......... 404 AAAAAAGTAG TGGAAGTACA ATTACTTGAC TATTGCAATA TTTTTAGCTA TTCATTTACT 68447 .......... .......... .......... .......... .......... .......... 404 GTGATCCAGC AGGGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 68507 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 452 GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC TGTAAGCATT TTCCCTTCTT 68567 |||||||||| |||||||||| |||||||||| |||||||||| | GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC T......... .......... 493 TTCAGAAACT TTGTTTAGTT TCCTGTTTTC TGCGTCATAT ATTGAATTAA TGGGATTGTA 68627 .......... .......... .......... .......... .......... .......... 493 TCATCTCTTT TCCTGTCACC ACACTATACG AAGTTTATCA GATGATGTGA TTTTGATTTC 68687 .......... .......... .......... .......... .......... .......... 493 GTTTTGAAAG ATGTAATCTG ATTTTCCTAT TAAGCACACT AACACATTTC TTGGGGTGAA 68747 .......... .......... .......... .......... .......... .......... 493 ATGAAAACGG GAGCAATACT TGAAAATGAT CCATGTTGCA TGGATAGTAG AAGTTATGTA 68807 .......... .......... .......... .......... .......... .......... 493 GTTAAGAGTT AGAAGTTTGT TGCTGGGTTC TTGATTAGTT TGTGATTTGT CTCTCATTTT 68867 .......... .......... .......... .......... .......... .......... 493 GGTGAAATCT TGATGTATTG AGTTACACCC TTCTAATGCA TAGAGGTTTA AAATGTAGTC 68927 .......... .......... .......... .......... .......... .......... 493 AATTAGTGCT TAATTGTGAT TTTCTTAGAT GCTTTTACCA GAAACTTCCT CAAATGTAAT 68987 .......... .......... .......... .......... .......... .......... 493 TGTTTCCCCT TCTCCACTTG TTGCAGTTCT CACAAATACC ATACATGGGT GGAGCTAAAG 69047 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TTCT CACAAATACC ATACATGGGT GGAGCTAAAG 527 CTGCAGTACC GGAGGCTCCT GCTCCGCCAA ATAGCATATT GTTT 69091 ||| |||||| ||| |||||| ||| || | | |||||||||| || CTGTAGTACC GGATGCTCCT GCTTCGTC-A ATAGCATATT TGTT 570 hqPGS_C09HBa0278J12.1+_SGN-E369720+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69091) ******************************************************************************** EST sequence 127 +strand 537 n (File: SGN-E248992+) 1 TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 61 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 121 AAAAATTAAG CTTGAAGAGC TGAAGAAATC GATGCACGCT GTGTTCTCAC AGTTTGGTAA 181 GATACTGGAG GTTTTAGCAT TCAAAACCCT AAAGCATAAA GGACAGGCGT GGGTAGTGTT 241 TGATGAAGTT TCTTCTGCTA GCAATGCACT TCGCCAGATG CAGGGTTTTC CTTTCTATGA 301 TAAGCCTATG AGAATACAAT ATGCAAAGAC GAAATCTGAT GTTGTAGCAA AAGCCGATGG 361 TACTTTTGTT CCCCGAGAAA AAAGAAAGAG GCACGAGGAT AAAGGGAGAA AGAAGAAGGA 421 CCAGCAAGAT GCTAATCAAG CTGGAATGGG CCGGAATCCT GCATATGCTG GTGCTTATGG 481 TGCAGCACCT CCTTTCTCAC AAATACCATA CATGGGTGGA GCTAAAGCTG CAGTACC Predicted gene structure (within gDNA segment 63348 to 69667): Exon 1 63948 64084 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 138 310 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 311 404 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 405 493 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 69014 69057 ( 44 n); cDNA 494 537 ( 44 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E248992+ 1.000 537 1.000 C PGS_C09HBa0278J12.1+_SGN-E248992+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69057) Alignment (genomic DNA sequence = upper lines): TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 64007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 60 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 64067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 120 AAAAATTAAG CTTGAAGGTA CTCCGTACTT GTCTCGAATG TTTATGCAGA ACATTATCTT 64127 |||||||||| ||||||| AAAAATTAAG CTTGAAG... .......... .......... .......... .......... 137 TGTGTTTCAC TGTTTGTAAA ATGTGTTGTG TATATTGATG GTGATTAAAT TGTAGAGCTG 64187 ||||| .......... .......... .......... .......... .......... .....AGCTG 142 AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 64247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 202 AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 64307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 262 AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATGGT ACTCATTTCC 64367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATG.. .......... 310 ATTGTTTTTG TATTCTTCAC TACTGGATTC TGGCTTGTTA CTGTTGCAAT ATGCTTACTG 64427 .......... .......... .......... .......... .......... .......... 310 CAATTTCTAC TTCATTGACA CAAAATATAT TCAGCTTTAC TATCAATCCA TCAACTGTAC 64487 .......... .......... .......... .......... .......... .......... 310 CTCTCAAACT ATCGAGGTTC AGCTATATGT AGGTTTATAT TGATTGGTTT ATCGTAATTT 64547 .......... .......... .......... .......... .......... .......... 310 AGTATTTTTA TGCTGGCTGT GAATCCCCTT AATCTCCATG CTTCGTCTTT ATATGGGCTT 64607 .......... .......... .......... .......... .......... .......... 310 GGTACTGGAT ATGGTGCCTG AGCATAGGTG GAGCTGAAGA AATTAAGTTT ATTTTCCTGA 64667 .......... .......... .......... .......... .......... .......... 310 AAAAATTAAT GATCTGTAGG AAAGGTATCA TACCATATTT GTTCGATTAG TGATCCTAGA 64727 .......... .......... .......... .......... .......... .......... 310 ACATATTAAT TGCTCAAGCA TTTAGGCATC TTACCTATGC TTAATTAGAG AATACTATTA 64787 .......... .......... .......... .......... .......... .......... 310 TTCATAGTCA AACTTAGTGC TCCCACTGGT TGAGTTTATG TGTCACAATT TGACTCAAAA 64847 .......... .......... .......... .......... .......... .......... 310 CTAAGTTTAA GAAAGAAATA AAGACTTATG AAACTTATAG ACTTAAATAT GCAAAAACAT 64907 .......... .......... .......... .......... .......... .......... 310 TTGTCACTGT AAGACTTCTG AAACTTTTAA TCTTAAACAT GTCATATCAA TTTTGTGTCT 64967 .......... .......... .......... .......... .......... .......... 310 CTATGAAGTT GTTATCAAGA GTGAATGGGA GAATTTGTTA TCACACTGTC AGTCTTGGGA 65027 .......... .......... .......... .......... .......... .......... 310 TGTGATGCAT ATCAGAAGTA AAGCTGTTAG GACTTAGGAG TAAGGATGAG TGTTCTTGAG 65087 .......... .......... .......... .......... .......... .......... 310 GTCTTCAAAC TAGTAGCCCT ATATGGAAAG AAGAACTGAA CTGCTTTTGG CATTTTTATT 65147 .......... .......... .......... .......... .......... .......... 310 TAAGCAAACT ACTAGATGAG CTTAATTGAA GAGATATGTT CAATGATGAT TCATATAGTC 65207 .......... .......... .......... .......... .......... .......... 310 AATTGCAACT TCCTTGGGAT TGGATTCTTT TCATAACCCC AATACATGTT GTATGCATTA 65267 .......... .......... .......... .......... .......... .......... 310 CTAGAATAGC ATGATAAAAA TCAAAGACTA TATCCAACTT GAAGCAATCT TGATTGTTCC 65327 .......... .......... .......... .......... .......... .......... 310 CTCATTGCTT CTCAAAGGAG TTGGAGCATG TTTGTCGTAA TCCAGCAAAC AACTATACAA 65387 .......... .......... .......... .......... .......... .......... 310 AATTTATCAA GCATAGAATG TTGTCTCAAT CCTCAATATT TGGGATTGGC TACGCGTGTC 65447 .......... .......... .......... .......... .......... .......... 310 CTTTACATTT CCGCTTTATT TAAGTTTCTA ATAACTTAAA TAATTTGTTT TTGAAGGATA 65507 .......... .......... .......... .......... .......... .......... 310 GTTTGGCTAA AACTAGATCT TTTGTATATT ACAATTATCC TATACTGACA TACAAATCTC 65567 .......... .......... .......... .......... .......... .......... 310 GACCACATCA AGGAACTCCT TATAATCACC AAACCTATCA TGCTTGTGAT TCAAGATATT 65627 .......... .......... .......... .......... .......... .......... 310 TGATATGTTA GTGTGATTGA CTGATAAGGG CACATTAGTT AGTTCATTGG CTAATGACAT 65687 .......... .......... .......... .......... .......... .......... 310 GAGGCTAAGA TCCGGCATGA CCAAGTGGCA AGATTAGCGG TTCTTAGTCT CGTTATTTGG 65747 .......... .......... .......... .......... .......... .......... 310 AGGTAGATGG AGGAGATATA GAAACCATGT TGACTCATAA GATTCTATAT TTAATAGCAC 65807 .......... .......... .......... .......... .......... .......... 310 CGGAATATTA TTATAGTTAG CCTTCTCTCC CATGAATTCT CCGTCCAACC AAATTGGATC 65867 .......... .......... .......... .......... .......... .......... 310 TGCCTTTGCA AGTCTTTCTG CAGTTTCTGC AAAGTGTATT TAGAACTTAT GATGAGATGG 65927 .......... .......... .......... .......... .......... .......... 310 CCTACGGTAG AAAACTCGAT GGGTTAGGAC AACCCATTTT GTGTTACCAA TCCCAGTGGA 65987 .......... .......... .......... .......... .......... .......... 310 ACTCCCATTA CTGGTCTATT AATGGAGGAG TAACATCAGC AACTAAAGCT TATCCCCAAT 66047 .......... .......... .......... .......... .......... .......... 310 TTGTTGAGTA TTATCTATAA AGTTGCTTTG TTGTGTTATA TCCTTGCTAA GTCCCAATTG 66107 .......... .......... .......... .......... .......... .......... 310 ATTATGTGAG CTTATACGTC TTTTCTGAGA CAAGTTTTCT CTTTGTATTT TTAGTCGACC 66167 .......... .......... .......... .......... .......... .......... 310 TCATTCCTTT TAGCACATTC TTTCATTGTA GTGTAATATC CATGGACCGT AGGTAAGATG 66227 .......... .......... .......... .......... .......... .......... 310 TCTATACAGG ACATAATCAG TCCTCGATAT GCGTTACTTG CATCCTCAGT CAGATGTCTT 66287 .......... .......... .......... .......... .......... .......... 310 CGGTTTTGTT CCTCTGTAAT ATTCATGTAT GTATTGGTCC ATAGATGGAA GAATGGAGTC 66347 .......... .......... .......... .......... .......... .......... 310 AGAATAGATA ATTGCAGTCA TAAGCTGCTC CATTGTTTCT ATAAACAACT GTATCTCCTG 66407 .......... .......... .......... .......... .......... .......... 310 GTCTCAGAGA TTGGTTAAGA TAATCCTTGT CAAAGATATT CTGACCTGGA AATCCAAATG 66467 .......... .......... .......... .......... .......... .......... 310 AGGATATTCT GAAATGTACA TGCTGCTTTA GCATTATGTG AGCTGTGACT TTGCAAATTG 66527 .......... .......... .......... .......... .......... .......... 310 TACTTCTTTA GACTTTAGTT TCAATTGTGT AGTAGATGCA TATTTCTCAT CTTCACTTGA 66587 .......... .......... .......... .......... .......... .......... 310 GTTTAAGAGT GTTTTCCATG CTAATTCTGG GTGTCACCTC ATTGCTTGGT GTTTCTTTTT 66647 .......... .......... .......... .......... .......... .......... 310 TGAAAATTGT TTTGATGAAT ATGGTTTAGA GTGGTTGCTT TCCATAGGCA CCCTAGAAGT 66707 .......... .......... .......... .......... .......... .......... 310 GCAAATATAA GAGTTGTTGC TTTCCATAGG CACCCTAGAA GTGCAAATAG TTGCAGGAGA 66767 .......... .......... .......... .......... .......... .......... 310 AAAACTCAAA TGTCCACAAA GTTGAGTAAC TCAGGTGAAG TGTCTATGTG ATGTACATTC 66827 .......... .......... .......... .......... .......... .......... 310 AGGGGCGGCT CGACGTAATT GGGAGCCTAA AGAGAAATTT CAATTGGCGG CCTAAAATAT 66887 .......... .......... .......... .......... .......... .......... 310 AAATATACTT CATTTACGTA TTTATTTAAA AAAATTATAC TATTAAGATG AAAATTATTA 66947 .......... .......... .......... .......... .......... .......... 310 GTACTTAATA TTATTTTTTC AGATACTAGT TTTAAGTAAG GCTCAACATT GAAAAACATC 67007 .......... .......... .......... .......... .......... .......... 310 TTAAGTGAGA TAATTATTAT ATGTATTGTT AACACAATGA TACAAGTAAT AAGTTGATAA 67067 .......... .......... .......... .......... .......... .......... 310 ATATTAAATA AAGATAAGAG TTAGAATCAT AGAATTTGAC TCTAAAAGTT GATGACTTGG 67127 .......... .......... .......... .......... .......... .......... 310 TATAACCTCA TTTTAAAATG CTTAGAGTAA CGCTTGAAAC TAAAATTTGA AAAAAATGAA 67187 .......... .......... .......... .......... .......... .......... 310 ATAAAATTGT AATTCACTTT GTAACACTTT TCACTGTTAA TTCTCATTTT TAACAAAGTA 67247 .......... .......... .......... .......... .......... .......... 310 CAAAAGATGT TAAAGTGGAT AAAATAATTT GTTTTTAAAT AAATTATACT TTTTATCATA 67307 .......... .......... .......... .......... .......... .......... 310 AATAATAAAT TTTTTATAAA AATTTTAACA CATAATTTAT TCTTCACAAA AAATTTTGGC 67367 .......... .......... .......... .......... .......... .......... 310 CCCCGAAATT TGGGGCCTAA GGCGAAGGCC TTATTATTTA ATGCATAGAG CAGGCTCTGT 67427 .......... .......... .......... .......... .......... .......... 310 GTACATTAAT GACGTTACAC CAAAAAGACA AAGTACAAAC ATCTATATTT AGTTGTTTTT 67487 .......... .......... .......... .......... .......... .......... 310 TGTTCTCTTG CAAAACATGT TACCACTATA CTTTGTTGTT TTGTCCTCAT CAAATAGTTG 67547 .......... .......... .......... .......... .......... .......... 310 TTTTCTGTTC TTGCATGGGG TGCTGCCGTA ACTACTGATG ATTCACATGC AGAATGTTAA 67607 .......... .......... .......... .......... .......... .......... 310 AATGTTTGTT GATATTGTTT TGCATTCTTT GGTTTTCTTA CATCATACAT GCTACTCAGT 67667 .......... .......... .......... .......... .......... .......... 310 CCATTTCCTC ATTGAGTTAA ACAACTGGTT TGAGTGAATT TTCTCAATGT TTACTTTTAA 67727 .......... .......... .......... .......... .......... .......... 310 ATGCAATGCT ACTCTTTGCA TTTACATATG AGCATGTTAC GGGGTTTAGC GAAGTGCATA 67787 .......... .......... .......... .......... .......... .......... 310 TAATGCTATA CAATGTGACC ACCTATTTGT TTGTGGTTCT TGCATGCGCA TGCTATGTTC 67847 .......... .......... .......... .......... .......... .......... 310 ATCTGTTTAT TACTCAAGCA AAATTAATGT TGCTTCTAGA TGCTTAATGA GGTTGGGGTT 67907 .......... .......... .......... .......... .......... .......... 310 TCGTACCTGG AGTTGCTTTT TTAGTTCCTG AATTAACTTC TTTAGTTCAA TTATGTCTTA 67967 .......... .......... .......... .......... .......... .......... 310 AAATGTCATT TTGATTACCA CTGTTATATG TTTCTGGTGT ACTATAGATT GGTTACATAG 68027 .......... .......... .......... .......... .......... .......... 310 TTTTTTGACA CACATATATG TATATCAGAG AATACAATAT GCAAAGACGA AATCTGATGT 68087 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG AATACAATAT GCAAAGACGA AATCTGATGT 342 TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 68147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 402 AGGTAAGTTC TTTCATTTGA AAATTTTCTA GTTCCACTAT TCGTTTGAAT CCCTAGAGAA 68207 || AG........ .......... .......... .......... .......... .......... 404 GGCTGGACTA TACATCTAAG ACATGTCATT TCATAAAGTT TGCTACATAC TGTTTGCTAT 68267 .......... .......... .......... .......... .......... .......... 404 AAGCTACATA TAATAATGGG CAGACAAATT TTACCCGTCA ACTTCTGTAC TTGTGATTAG 68327 .......... .......... .......... .......... .......... .......... 404 CTCCCCCCCC CCCCCCCCCC TCCCCCCTTC CTTTCGTACG ACCCAACCAC ATCCCTAAAT 68387 .......... .......... .......... .......... .......... .......... 404 AAAAAAGTAG TGGAAGTACA ATTACTTGAC TATTGCAATA TTTTTAGCTA TTCATTTACT 68447 .......... .......... .......... .......... .......... .......... 404 GTGATCCAGC AGGGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 68507 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 452 GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC TGTAAGCATT TTCCCTTCTT 68567 |||||||||| |||||||||| |||||||||| |||||||||| | GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC T......... .......... 493 TTCAGAAACT TTGTTTAGTT TCCTGTTTTC TGCGTCATAT ATTGAATTAA TGGGATTGTA 68627 .......... .......... .......... .......... .......... .......... 493 TCATCTCTTT TCCTGTCACC ACACTATACG AAGTTTATCA GATGATGTGA TTTTGATTTC 68687 .......... .......... .......... .......... .......... .......... 493 GTTTTGAAAG ATGTAATCTG ATTTTCCTAT TAAGCACACT AACACATTTC TTGGGGTGAA 68747 .......... .......... .......... .......... .......... .......... 493 ATGAAAACGG GAGCAATACT TGAAAATGAT CCATGTTGCA TGGATAGTAG AAGTTATGTA 68807 .......... .......... .......... .......... .......... .......... 493 GTTAAGAGTT AGAAGTTTGT TGCTGGGTTC TTGATTAGTT TGTGATTTGT CTCTCATTTT 68867 .......... .......... .......... .......... .......... .......... 493 GGTGAAATCT TGATGTATTG AGTTACACCC TTCTAATGCA TAGAGGTTTA AAATGTAGTC 68927 .......... .......... .......... .......... .......... .......... 493 AATTAGTGCT TAATTGTGAT TTTCTTAGAT GCTTTTACCA GAAACTTCCT CAAATGTAAT 68987 .......... .......... .......... .......... .......... .......... 493 TGTTTCCCCT TCTCCACTTG TTGCAGTTCT CACAAATACC ATACATGGGT GGAGCTAAAG 69047 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TTCT CACAAATACC ATACATGGGT GGAGCTAAAG 527 CTGCAGTACC 69057 |||||||||| CTGCAGTACC 537 hqPGS_C09HBa0278J12.1+_SGN-E248992+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69057) ******************************************************************************** EST sequence 3 +strand 534 n (File: SGN-E241403+) 1 TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 61 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 121 AAAAATTAAG CTTGAAGAGC TGAAGAAATC GATGCACGCT GTGTTCTCAC AGTTTGGTAA 181 GATACTGGAG GTTTTAGCAT TCAAAACCCT AAAGCATAAA GGACAGGCGT GGGTAGTGTT 241 TGATGAAGTT TCTTCTGCTA GCAATGCACT TCGCCAGATG CAGGGTTTTC CTTTCTATGA 301 TAAGCCTATG AGAATACAAT ATGCAAAGAC GAAATCTGAT GTTGTAGCAA AAGCCGATGG 361 TACTTTTGTT CCCCGAGAAA AAAGAAAGAG GCACGAGGAT AAAGGGAGAA AGAAGAAGGA 421 CCAGCAAGAT GCTAATCAAG CTGGAATGGG CCGGAATCCT GCATATGCTG GTGCTTATGG 481 TGCAGCACCT CCTTTCTCAC AAATACCATA CATGGGTGGA GCTAAAGCTG CAGT Predicted gene structure (within gDNA segment 63348 to 69664): Exon 1 63948 64084 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 138 310 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 311 404 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 405 493 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 69014 69054 ( 41 n); cDNA 494 534 ( 41 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E241403+ 1.000 534 1.000 C PGS_C09HBa0278J12.1+_SGN-E241403+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69054) Alignment (genomic DNA sequence = upper lines): TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 64007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTAGG CGTAGACGAG CAGCCATGGC GGAGGCGAAC CAAAATACGA ACCCGAATCC 60 GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 64067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCCCTAGC GGCGGCGAAG TTCCACCAAA TGTGACTATT TACATCAATA ACCTCAATGA 120 AAAAATTAAG CTTGAAGGTA CTCCGTACTT GTCTCGAATG TTTATGCAGA ACATTATCTT 64127 |||||||||| ||||||| AAAAATTAAG CTTGAAG... .......... .......... .......... .......... 137 TGTGTTTCAC TGTTTGTAAA ATGTGTTGTG TATATTGATG GTGATTAAAT TGTAGAGCTG 64187 ||||| .......... .......... .......... .......... .......... .....AGCTG 142 AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 64247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATCGA TGCACGCTGT GTTCTCACAG TTTGGTAAGA TACTGGAGGT TTTAGCATTC 202 AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 64307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCTAA AGCATAAAGG ACAGGCGTGG GTAGTGTTTG ATGAAGTTTC TTCTGCTAGC 262 AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATGGT ACTCATTTCC 64367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATGCACTTC GCCAGATGCA GGGTTTTCCT TTCTATGATA AGCCTATG.. .......... 310 ATTGTTTTTG TATTCTTCAC TACTGGATTC TGGCTTGTTA CTGTTGCAAT ATGCTTACTG 64427 .......... .......... .......... .......... .......... .......... 310 CAATTTCTAC TTCATTGACA CAAAATATAT TCAGCTTTAC TATCAATCCA TCAACTGTAC 64487 .......... .......... .......... .......... .......... .......... 310 CTCTCAAACT ATCGAGGTTC AGCTATATGT AGGTTTATAT TGATTGGTTT ATCGTAATTT 64547 .......... .......... .......... .......... .......... .......... 310 AGTATTTTTA TGCTGGCTGT GAATCCCCTT AATCTCCATG CTTCGTCTTT ATATGGGCTT 64607 .......... .......... .......... .......... .......... .......... 310 GGTACTGGAT ATGGTGCCTG AGCATAGGTG GAGCTGAAGA AATTAAGTTT ATTTTCCTGA 64667 .......... .......... .......... .......... .......... .......... 310 AAAAATTAAT GATCTGTAGG AAAGGTATCA TACCATATTT GTTCGATTAG TGATCCTAGA 64727 .......... .......... .......... .......... .......... .......... 310 ACATATTAAT TGCTCAAGCA TTTAGGCATC TTACCTATGC TTAATTAGAG AATACTATTA 64787 .......... .......... .......... .......... .......... .......... 310 TTCATAGTCA AACTTAGTGC TCCCACTGGT TGAGTTTATG TGTCACAATT TGACTCAAAA 64847 .......... .......... .......... .......... .......... .......... 310 CTAAGTTTAA GAAAGAAATA AAGACTTATG AAACTTATAG ACTTAAATAT GCAAAAACAT 64907 .......... .......... .......... .......... .......... .......... 310 TTGTCACTGT AAGACTTCTG AAACTTTTAA TCTTAAACAT GTCATATCAA TTTTGTGTCT 64967 .......... .......... .......... .......... .......... .......... 310 CTATGAAGTT GTTATCAAGA GTGAATGGGA GAATTTGTTA TCACACTGTC AGTCTTGGGA 65027 .......... .......... .......... .......... .......... .......... 310 TGTGATGCAT ATCAGAAGTA AAGCTGTTAG GACTTAGGAG TAAGGATGAG TGTTCTTGAG 65087 .......... .......... .......... .......... .......... .......... 310 GTCTTCAAAC TAGTAGCCCT ATATGGAAAG AAGAACTGAA CTGCTTTTGG CATTTTTATT 65147 .......... .......... .......... .......... .......... .......... 310 TAAGCAAACT ACTAGATGAG CTTAATTGAA GAGATATGTT CAATGATGAT TCATATAGTC 65207 .......... .......... .......... .......... .......... .......... 310 AATTGCAACT TCCTTGGGAT TGGATTCTTT TCATAACCCC AATACATGTT GTATGCATTA 65267 .......... .......... .......... .......... .......... .......... 310 CTAGAATAGC ATGATAAAAA TCAAAGACTA TATCCAACTT GAAGCAATCT TGATTGTTCC 65327 .......... .......... .......... .......... .......... .......... 310 CTCATTGCTT CTCAAAGGAG TTGGAGCATG TTTGTCGTAA TCCAGCAAAC AACTATACAA 65387 .......... .......... .......... .......... .......... .......... 310 AATTTATCAA GCATAGAATG TTGTCTCAAT CCTCAATATT TGGGATTGGC TACGCGTGTC 65447 .......... .......... .......... .......... .......... .......... 310 CTTTACATTT CCGCTTTATT TAAGTTTCTA ATAACTTAAA TAATTTGTTT TTGAAGGATA 65507 .......... .......... .......... .......... .......... .......... 310 GTTTGGCTAA AACTAGATCT TTTGTATATT ACAATTATCC TATACTGACA TACAAATCTC 65567 .......... .......... .......... .......... .......... .......... 310 GACCACATCA AGGAACTCCT TATAATCACC AAACCTATCA TGCTTGTGAT TCAAGATATT 65627 .......... .......... .......... .......... .......... .......... 310 TGATATGTTA GTGTGATTGA CTGATAAGGG CACATTAGTT AGTTCATTGG CTAATGACAT 65687 .......... .......... .......... .......... .......... .......... 310 GAGGCTAAGA TCCGGCATGA CCAAGTGGCA AGATTAGCGG TTCTTAGTCT CGTTATTTGG 65747 .......... .......... .......... .......... .......... .......... 310 AGGTAGATGG AGGAGATATA GAAACCATGT TGACTCATAA GATTCTATAT TTAATAGCAC 65807 .......... .......... .......... .......... .......... .......... 310 CGGAATATTA TTATAGTTAG CCTTCTCTCC CATGAATTCT CCGTCCAACC AAATTGGATC 65867 .......... .......... .......... .......... .......... .......... 310 TGCCTTTGCA AGTCTTTCTG CAGTTTCTGC AAAGTGTATT TAGAACTTAT GATGAGATGG 65927 .......... .......... .......... .......... .......... .......... 310 CCTACGGTAG AAAACTCGAT GGGTTAGGAC AACCCATTTT GTGTTACCAA TCCCAGTGGA 65987 .......... .......... .......... .......... .......... .......... 310 ACTCCCATTA CTGGTCTATT AATGGAGGAG TAACATCAGC AACTAAAGCT TATCCCCAAT 66047 .......... .......... .......... .......... .......... .......... 310 TTGTTGAGTA TTATCTATAA AGTTGCTTTG TTGTGTTATA TCCTTGCTAA GTCCCAATTG 66107 .......... .......... .......... .......... .......... .......... 310 ATTATGTGAG CTTATACGTC TTTTCTGAGA CAAGTTTTCT CTTTGTATTT TTAGTCGACC 66167 .......... .......... .......... .......... .......... .......... 310 TCATTCCTTT TAGCACATTC TTTCATTGTA GTGTAATATC CATGGACCGT AGGTAAGATG 66227 .......... .......... .......... .......... .......... .......... 310 TCTATACAGG ACATAATCAG TCCTCGATAT GCGTTACTTG CATCCTCAGT CAGATGTCTT 66287 .......... .......... .......... .......... .......... .......... 310 CGGTTTTGTT CCTCTGTAAT ATTCATGTAT GTATTGGTCC ATAGATGGAA GAATGGAGTC 66347 .......... .......... .......... .......... .......... .......... 310 AGAATAGATA ATTGCAGTCA TAAGCTGCTC CATTGTTTCT ATAAACAACT GTATCTCCTG 66407 .......... .......... .......... .......... .......... .......... 310 GTCTCAGAGA TTGGTTAAGA TAATCCTTGT CAAAGATATT CTGACCTGGA AATCCAAATG 66467 .......... .......... .......... .......... .......... .......... 310 AGGATATTCT GAAATGTACA TGCTGCTTTA GCATTATGTG AGCTGTGACT TTGCAAATTG 66527 .......... .......... .......... .......... .......... .......... 310 TACTTCTTTA GACTTTAGTT TCAATTGTGT AGTAGATGCA TATTTCTCAT CTTCACTTGA 66587 .......... .......... .......... .......... .......... .......... 310 GTTTAAGAGT GTTTTCCATG CTAATTCTGG GTGTCACCTC ATTGCTTGGT GTTTCTTTTT 66647 .......... .......... .......... .......... .......... .......... 310 TGAAAATTGT TTTGATGAAT ATGGTTTAGA GTGGTTGCTT TCCATAGGCA CCCTAGAAGT 66707 .......... .......... .......... .......... .......... .......... 310 GCAAATATAA GAGTTGTTGC TTTCCATAGG CACCCTAGAA GTGCAAATAG TTGCAGGAGA 66767 .......... .......... .......... .......... .......... .......... 310 AAAACTCAAA TGTCCACAAA GTTGAGTAAC TCAGGTGAAG TGTCTATGTG ATGTACATTC 66827 .......... .......... .......... .......... .......... .......... 310 AGGGGCGGCT CGACGTAATT GGGAGCCTAA AGAGAAATTT CAATTGGCGG CCTAAAATAT 66887 .......... .......... .......... .......... .......... .......... 310 AAATATACTT CATTTACGTA TTTATTTAAA AAAATTATAC TATTAAGATG AAAATTATTA 66947 .......... .......... .......... .......... .......... .......... 310 GTACTTAATA TTATTTTTTC AGATACTAGT TTTAAGTAAG GCTCAACATT GAAAAACATC 67007 .......... .......... .......... .......... .......... .......... 310 TTAAGTGAGA TAATTATTAT ATGTATTGTT AACACAATGA TACAAGTAAT AAGTTGATAA 67067 .......... .......... .......... .......... .......... .......... 310 ATATTAAATA AAGATAAGAG TTAGAATCAT AGAATTTGAC TCTAAAAGTT GATGACTTGG 67127 .......... .......... .......... .......... .......... .......... 310 TATAACCTCA TTTTAAAATG CTTAGAGTAA CGCTTGAAAC TAAAATTTGA AAAAAATGAA 67187 .......... .......... .......... .......... .......... .......... 310 ATAAAATTGT AATTCACTTT GTAACACTTT TCACTGTTAA TTCTCATTTT TAACAAAGTA 67247 .......... .......... .......... .......... .......... .......... 310 CAAAAGATGT TAAAGTGGAT AAAATAATTT GTTTTTAAAT AAATTATACT TTTTATCATA 67307 .......... .......... .......... .......... .......... .......... 310 AATAATAAAT TTTTTATAAA AATTTTAACA CATAATTTAT TCTTCACAAA AAATTTTGGC 67367 .......... .......... .......... .......... .......... .......... 310 CCCCGAAATT TGGGGCCTAA GGCGAAGGCC TTATTATTTA ATGCATAGAG CAGGCTCTGT 67427 .......... .......... .......... .......... .......... .......... 310 GTACATTAAT GACGTTACAC CAAAAAGACA AAGTACAAAC ATCTATATTT AGTTGTTTTT 67487 .......... .......... .......... .......... .......... .......... 310 TGTTCTCTTG CAAAACATGT TACCACTATA CTTTGTTGTT TTGTCCTCAT CAAATAGTTG 67547 .......... .......... .......... .......... .......... .......... 310 TTTTCTGTTC TTGCATGGGG TGCTGCCGTA ACTACTGATG ATTCACATGC AGAATGTTAA 67607 .......... .......... .......... .......... .......... .......... 310 AATGTTTGTT GATATTGTTT TGCATTCTTT GGTTTTCTTA CATCATACAT GCTACTCAGT 67667 .......... .......... .......... .......... .......... .......... 310 CCATTTCCTC ATTGAGTTAA ACAACTGGTT TGAGTGAATT TTCTCAATGT TTACTTTTAA 67727 .......... .......... .......... .......... .......... .......... 310 ATGCAATGCT ACTCTTTGCA TTTACATATG AGCATGTTAC GGGGTTTAGC GAAGTGCATA 67787 .......... .......... .......... .......... .......... .......... 310 TAATGCTATA CAATGTGACC ACCTATTTGT TTGTGGTTCT TGCATGCGCA TGCTATGTTC 67847 .......... .......... .......... .......... .......... .......... 310 ATCTGTTTAT TACTCAAGCA AAATTAATGT TGCTTCTAGA TGCTTAATGA GGTTGGGGTT 67907 .......... .......... .......... .......... .......... .......... 310 TCGTACCTGG AGTTGCTTTT TTAGTTCCTG AATTAACTTC TTTAGTTCAA TTATGTCTTA 67967 .......... .......... .......... .......... .......... .......... 310 AAATGTCATT TTGATTACCA CTGTTATATG TTTCTGGTGT ACTATAGATT GGTTACATAG 68027 .......... .......... .......... .......... .......... .......... 310 TTTTTTGACA CACATATATG TATATCAGAG AATACAATAT GCAAAGACGA AATCTGATGT 68087 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG AATACAATAT GCAAAGACGA AATCTGATGT 342 TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 68147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAAA GCCGATGGTA CTTTTGTTCC CCGAGAAAAA AGAAAGAGGC ACGAGGATAA 402 AGGTAAGTTC TTTCATTTGA AAATTTTCTA GTTCCACTAT TCGTTTGAAT CCCTAGAGAA 68207 || AG........ .......... .......... .......... .......... .......... 404 GGCTGGACTA TACATCTAAG ACATGTCATT TCATAAAGTT TGCTACATAC TGTTTGCTAT 68267 .......... .......... .......... .......... .......... .......... 404 AAGCTACATA TAATAATGGG CAGACAAATT TTACCCGTCA ACTTCTGTAC TTGTGATTAG 68327 .......... .......... .......... .......... .......... .......... 404 CTCCCCCCCC CCCCCCCCCC TCCCCCCTTC CTTTCGTACG ACCCAACCAC ATCCCTAAAT 68387 .......... .......... .......... .......... .......... .......... 404 AAAAAAGTAG TGGAAGTACA ATTACTTGAC TATTGCAATA TTTTTAGCTA TTCATTTACT 68447 .......... .......... .......... .......... .......... .......... 404 GTGATCCAGC AGGGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 68507 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGAGAAAG AAGAAGGACC AGCAAGATGC TAATCAAGCT GGAATGGGCC 452 GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC TGTAAGCATT TTCCCTTCTT 68567 |||||||||| |||||||||| |||||||||| |||||||||| | GGAATCCTGC ATATGCTGGT GCTTATGGTG CAGCACCTCC T......... .......... 493 TTCAGAAACT TTGTTTAGTT TCCTGTTTTC TGCGTCATAT ATTGAATTAA TGGGATTGTA 68627 .......... .......... .......... .......... .......... .......... 493 TCATCTCTTT TCCTGTCACC ACACTATACG AAGTTTATCA GATGATGTGA TTTTGATTTC 68687 .......... .......... .......... .......... .......... .......... 493 GTTTTGAAAG ATGTAATCTG ATTTTCCTAT TAAGCACACT AACACATTTC TTGGGGTGAA 68747 .......... .......... .......... .......... .......... .......... 493 ATGAAAACGG GAGCAATACT TGAAAATGAT CCATGTTGCA TGGATAGTAG AAGTTATGTA 68807 .......... .......... .......... .......... .......... .......... 493 GTTAAGAGTT AGAAGTTTGT TGCTGGGTTC TTGATTAGTT TGTGATTTGT CTCTCATTTT 68867 .......... .......... .......... .......... .......... .......... 493 GGTGAAATCT TGATGTATTG AGTTACACCC TTCTAATGCA TAGAGGTTTA AAATGTAGTC 68927 .......... .......... .......... .......... .......... .......... 493 AATTAGTGCT TAATTGTGAT TTTCTTAGAT GCTTTTACCA GAAACTTCCT CAAATGTAAT 68987 .......... .......... .......... .......... .......... .......... 493 TGTTTCCCCT TCTCCACTTG TTGCAGTTCT CACAAATACC ATACATGGGT GGAGCTAAAG 69047 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TTCT CACAAATACC ATACATGGGT GGAGCTAAAG 527 CTGCAGT 69054 ||||||| CTGCAGT 534 hqPGS_C09HBa0278J12.1+_SGN-E241403+ (63948 64084,64183 64355,68056 68149,68460 68548,69014 69054) ******************************************************************************** EST sequence 37 +strand 530 n (File: SGN-E272699+) 1 AGGCGTAGAC GAGCAGCCAT GGCGGAGGCG AACCAAAATA CGAACCCGAA TCCGGCCCCT 61 AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA TGAAAAAATT 121 AAGCTTGAAG AGCTGAAGAA ATCGATGCAC GCTGTGTTCT CACAGTTTGG TAAGATACTG 181 GAGGTTTTAG CATTCAAAAC CCTAAAGCAT AAAGGACAGG CGTGGGTAGT GTTTGATGAA 241 GTTTCTTCTG CTAGCAATGC ACTTCGCCAG ATGCAGGGTT TTCCTTTCTA TGATAAGCCT 301 ATGAGAATAC AATATGCAAA GACGAAATCT GATGTTGTAG CAAAAGCCGA TGGTACTTTT 361 GTTCCCCGAG AAAAAAGAAA GAGGCACGAG GATAAAGGGA GAAAGAAGAA GGACCAGCAA 421 GATGCTAATC AAGCTGGAAT GGGCCGGAAT CCTGCATATG CTGGTGCTTA TGGTGCAGCA 481 CCTCCTTTCT CACAAATACC ATACATGGGT GGAGCTAAAG CTGCAGTACC Predicted gene structure (within gDNA segment 63355 to 69667): Exon 1 63955 64084 ( 130 n); cDNA 1 130 ( 130 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 64183 64355 ( 173 n); cDNA 131 303 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 3 68056 68149 ( 94 n); cDNA 304 397 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 68460 68548 ( 89 n); cDNA 398 486 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 69014 69057 ( 44 n); cDNA 487 530 ( 44 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E272699+ 1.000 530 1.000 C PGS_C09HBa0278J12.1+_SGN-E272699+ (63955 64084,64183 64355,68056 68149,68460 68548,69014 69057) Alignment (genomic DNA sequence = upper lines): AGGCGTAGAC GAGCAGCCAT GGCGGAGGCG AACCAAAATA CGAACCCGAA TCCGGCCCCT 64014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCGTAGAC GAGCAGCCAT GGCGGAGGCG AACCAAAATA CGAACCCGAA TCCGGCCCCT 60 AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA TGAAAAAATT 64074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGGCGGCG AAGTTCCACC AAATGTGACT ATTTACATCA ATAACCTCAA TGAAAAAATT 120 AAGCTTGAAG GTACTCCGTA CTTGTCTCGA ATGTTTATGC AGAACATTAT CTTTGTGTTT 64134 |||||||||| AAGCTTGAAG .......... .......... .......... .......... .......... 130 CACTGTTTGT AAAATGTGTT GTGTATATTG ATGGTGATTA AATTGTAGAG CTGAAGAAAT 64194 || |||||||||| .......... .......... .......... .......... ........AG CTGAAGAAAT 142 CGATGCACGC TGTGTTCTCA CAGTTTGGTA AGATACTGGA GGTTTTAGCA TTCAAAACCC 64254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATGCACGC TGTGTTCTCA CAGTTTGGTA AGATACTGGA GGTTTTAGCA TTCAAAACCC 202 TAAAGCATAA AGGACAGGCG TGGGTAGTGT TTGATGAAGT TTCTTCTGCT AGCAATGCAC 64314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGCATAA AGGACAGGCG TGGGTAGTGT TTGATGAAGT TTCTTCTGCT AGCAATGCAC 262 TTCGCCAGAT GCAGGGTTTT CCTTTCTATG ATAAGCCTAT GGTACTCATT TCCATTGTTT 64374 |||||||||| |||||||||| |||||||||| |||||||||| | TTCGCCAGAT GCAGGGTTTT CCTTTCTATG ATAAGCCTAT G......... .......... 303 TTGTATTCTT CACTACTGGA TTCTGGCTTG TTACTGTTGC AATATGCTTA CTGCAATTTC 64434 .......... .......... .......... .......... .......... .......... 303 TACTTCATTG ACACAAAATA TATTCAGCTT TACTATCAAT CCATCAACTG TACCTCTCAA 64494 .......... .......... .......... .......... .......... .......... 303 ACTATCGAGG TTCAGCTATA TGTAGGTTTA TATTGATTGG TTTATCGTAA TTTAGTATTT 64554 .......... .......... .......... .......... .......... .......... 303 TTATGCTGGC TGTGAATCCC CTTAATCTCC ATGCTTCGTC TTTATATGGG CTTGGTACTG 64614 .......... .......... .......... .......... .......... .......... 303 GATATGGTGC CTGAGCATAG GTGGAGCTGA AGAAATTAAG TTTATTTTCC TGAAAAAATT 64674 .......... .......... .......... .......... .......... .......... 303 AATGATCTGT AGGAAAGGTA TCATACCATA TTTGTTCGAT TAGTGATCCT AGAACATATT 64734 .......... .......... .......... .......... .......... .......... 303 AATTGCTCAA GCATTTAGGC ATCTTACCTA TGCTTAATTA GAGAATACTA TTATTCATAG 64794 .......... .......... .......... .......... .......... .......... 303 TCAAACTTAG TGCTCCCACT GGTTGAGTTT ATGTGTCACA ATTTGACTCA AAACTAAGTT 64854 .......... .......... .......... .......... .......... .......... 303 TAAGAAAGAA ATAAAGACTT ATGAAACTTA TAGACTTAAA TATGCAAAAA CATTTGTCAC 64914 .......... .......... .......... .......... .......... .......... 303 TGTAAGACTT CTGAAACTTT TAATCTTAAA CATGTCATAT CAATTTTGTG TCTCTATGAA 64974 .......... .......... .......... .......... .......... .......... 303 GTTGTTATCA AGAGTGAATG GGAGAATTTG TTATCACACT GTCAGTCTTG GGATGTGATG 65034 .......... .......... .......... .......... .......... .......... 303 CATATCAGAA GTAAAGCTGT TAGGACTTAG GAGTAAGGAT GAGTGTTCTT GAGGTCTTCA 65094 .......... .......... .......... .......... .......... .......... 303 AACTAGTAGC CCTATATGGA AAGAAGAACT GAACTGCTTT TGGCATTTTT ATTTAAGCAA 65154 .......... .......... .......... .......... .......... .......... 303 ACTACTAGAT GAGCTTAATT GAAGAGATAT GTTCAATGAT GATTCATATA GTCAATTGCA 65214 .......... .......... .......... .......... .......... .......... 303 ACTTCCTTGG GATTGGATTC TTTTCATAAC CCCAATACAT GTTGTATGCA TTACTAGAAT 65274 .......... .......... .......... .......... .......... .......... 303 AGCATGATAA AAATCAAAGA CTATATCCAA CTTGAAGCAA TCTTGATTGT TCCCTCATTG 65334 .......... .......... .......... .......... .......... .......... 303 CTTCTCAAAG GAGTTGGAGC ATGTTTGTCG TAATCCAGCA AACAACTATA CAAAATTTAT 65394 .......... .......... .......... .......... .......... .......... 303 CAAGCATAGA ATGTTGTCTC AATCCTCAAT ATTTGGGATT GGCTACGCGT GTCCTTTACA 65454 .......... .......... .......... .......... .......... .......... 303 TTTCCGCTTT ATTTAAGTTT CTAATAACTT AAATAATTTG TTTTTGAAGG ATAGTTTGGC 65514 .......... .......... .......... .......... .......... .......... 303 TAAAACTAGA TCTTTTGTAT ATTACAATTA TCCTATACTG ACATACAAAT CTCGACCACA 65574 .......... .......... .......... .......... .......... .......... 303 TCAAGGAACT CCTTATAATC ACCAAACCTA TCATGCTTGT GATTCAAGAT ATTTGATATG 65634 .......... .......... .......... .......... .......... .......... 303 TTAGTGTGAT TGACTGATAA GGGCACATTA GTTAGTTCAT TGGCTAATGA CATGAGGCTA 65694 .......... .......... .......... .......... .......... .......... 303 AGATCCGGCA TGACCAAGTG GCAAGATTAG CGGTTCTTAG TCTCGTTATT TGGAGGTAGA 65754 .......... .......... .......... .......... .......... .......... 303 TGGAGGAGAT ATAGAAACCA TGTTGACTCA TAAGATTCTA TATTTAATAG CACCGGAATA 65814 .......... .......... .......... .......... .......... .......... 303 TTATTATAGT TAGCCTTCTC TCCCATGAAT TCTCCGTCCA ACCAAATTGG ATCTGCCTTT 65874 .......... .......... .......... .......... .......... .......... 303 GCAAGTCTTT CTGCAGTTTC TGCAAAGTGT ATTTAGAACT TATGATGAGA TGGCCTACGG 65934 .......... .......... .......... .......... .......... .......... 303 TAGAAAACTC GATGGGTTAG GACAACCCAT TTTGTGTTAC CAATCCCAGT GGAACTCCCA 65994 .......... .......... .......... .......... .......... .......... 303 TTACTGGTCT ATTAATGGAG GAGTAACATC AGCAACTAAA GCTTATCCCC AATTTGTTGA 66054 .......... .......... .......... .......... .......... .......... 303 GTATTATCTA TAAAGTTGCT TTGTTGTGTT ATATCCTTGC TAAGTCCCAA TTGATTATGT 66114 .......... .......... .......... .......... .......... .......... 303 GAGCTTATAC GTCTTTTCTG AGACAAGTTT TCTCTTTGTA TTTTTAGTCG ACCTCATTCC 66174 .......... .......... .......... .......... .......... .......... 303 TTTTAGCACA TTCTTTCATT GTAGTGTAAT ATCCATGGAC CGTAGGTAAG ATGTCTATAC 66234 .......... .......... .......... .......... .......... .......... 303 AGGACATAAT CAGTCCTCGA TATGCGTTAC TTGCATCCTC AGTCAGATGT CTTCGGTTTT 66294 .......... .......... .......... .......... .......... .......... 303 GTTCCTCTGT AATATTCATG TATGTATTGG TCCATAGATG GAAGAATGGA GTCAGAATAG 66354 .......... .......... .......... .......... .......... .......... 303 ATAATTGCAG TCATAAGCTG CTCCATTGTT TCTATAAACA ACTGTATCTC CTGGTCTCAG 66414 .......... .......... .......... .......... .......... .......... 303 AGATTGGTTA AGATAATCCT TGTCAAAGAT ATTCTGACCT GGAAATCCAA ATGAGGATAT 66474 .......... .......... .......... .......... .......... .......... 303 TCTGAAATGT ACATGCTGCT TTAGCATTAT GTGAGCTGTG ACTTTGCAAA TTGTACTTCT 66534 .......... .......... .......... .......... .......... .......... 303 TTAGACTTTA GTTTCAATTG TGTAGTAGAT GCATATTTCT CATCTTCACT TGAGTTTAAG 66594 .......... .......... .......... .......... .......... .......... 303 AGTGTTTTCC ATGCTAATTC TGGGTGTCAC CTCATTGCTT GGTGTTTCTT TTTTGAAAAT 66654 .......... .......... .......... .......... .......... .......... 303 TGTTTTGATG AATATGGTTT AGAGTGGTTG CTTTCCATAG GCACCCTAGA AGTGCAAATA 66714 .......... .......... .......... .......... .......... .......... 303 TAAGAGTTGT TGCTTTCCAT AGGCACCCTA GAAGTGCAAA TAGTTGCAGG AGAAAAACTC 66774 .......... .......... .......... .......... .......... .......... 303 AAATGTCCAC AAAGTTGAGT AACTCAGGTG AAGTGTCTAT GTGATGTACA TTCAGGGGCG 66834 .......... .......... .......... .......... .......... .......... 303 GCTCGACGTA ATTGGGAGCC TAAAGAGAAA TTTCAATTGG CGGCCTAAAA TATAAATATA 66894 .......... .......... .......... .......... .......... .......... 303 CTTCATTTAC GTATTTATTT AAAAAAATTA TACTATTAAG ATGAAAATTA TTAGTACTTA 66954 .......... .......... .......... .......... .......... .......... 303 ATATTATTTT TTCAGATACT AGTTTTAAGT AAGGCTCAAC ATTGAAAAAC ATCTTAAGTG 67014 .......... .......... .......... .......... .......... .......... 303 AGATAATTAT TATATGTATT GTTAACACAA TGATACAAGT AATAAGTTGA TAAATATTAA 67074 .......... .......... .......... .......... .......... .......... 303 ATAAAGATAA GAGTTAGAAT CATAGAATTT GACTCTAAAA GTTGATGACT TGGTATAACC 67134 .......... .......... .......... .......... .......... .......... 303 TCATTTTAAA ATGCTTAGAG TAACGCTTGA AACTAAAATT TGAAAAAAAT GAAATAAAAT 67194 .......... .......... .......... .......... .......... .......... 303 TGTAATTCAC TTTGTAACAC TTTTCACTGT TAATTCTCAT TTTTAACAAA GTACAAAAGA 67254 .......... .......... .......... .......... .......... .......... 303 TGTTAAAGTG GATAAAATAA TTTGTTTTTA AATAAATTAT ACTTTTTATC ATAAATAATA 67314 .......... .......... .......... .......... .......... .......... 303 AATTTTTTAT AAAAATTTTA ACACATAATT TATTCTTCAC AAAAAATTTT GGCCCCCGAA 67374 .......... .......... .......... .......... .......... .......... 303 ATTTGGGGCC TAAGGCGAAG GCCTTATTAT TTAATGCATA GAGCAGGCTC TGTGTACATT 67434 .......... .......... .......... .......... .......... .......... 303 AATGACGTTA CACCAAAAAG ACAAAGTACA AACATCTATA TTTAGTTGTT TTTTGTTCTC 67494 .......... .......... .......... .......... .......... .......... 303 TTGCAAAACA TGTTACCACT ATACTTTGTT GTTTTGTCCT CATCAAATAG TTGTTTTCTG 67554 .......... .......... .......... .......... .......... .......... 303 TTCTTGCATG GGGTGCTGCC GTAACTACTG ATGATTCACA TGCAGAATGT TAAAATGTTT 67614 .......... .......... .......... .......... .......... .......... 303 GTTGATATTG TTTTGCATTC TTTGGTTTTC TTACATCATA CATGCTACTC AGTCCATTTC 67674 .......... .......... .......... .......... .......... .......... 303 CTCATTGAGT TAAACAACTG GTTTGAGTGA ATTTTCTCAA TGTTTACTTT TAAATGCAAT 67734 .......... .......... .......... .......... .......... .......... 303 GCTACTCTTT GCATTTACAT ATGAGCATGT TACGGGGTTT AGCGAAGTGC ATATAATGCT 67794 .......... .......... .......... .......... .......... .......... 303 ATACAATGTG ACCACCTATT TGTTTGTGGT TCTTGCATGC GCATGCTATG TTCATCTGTT 67854 .......... .......... .......... .......... .......... .......... 303 TATTACTCAA GCAAAATTAA TGTTGCTTCT AGATGCTTAA TGAGGTTGGG GTTTCGTACC 67914 .......... .......... .......... .......... .......... .......... 303 TGGAGTTGCT TTTTTAGTTC CTGAATTAAC TTCTTTAGTT CAATTATGTC TTAAAATGTC 67974 .......... .......... .......... .......... .......... .......... 303 ATTTTGATTA CCACTGTTAT ATGTTTCTGG TGTACTATAG ATTGGTTACA TAGTTTTTTG 68034 .......... .......... .......... .......... .......... .......... 303 ACACACATAT ATGTATATCA GAGAATACAA TATGCAAAGA CGAAATCTGA TGTTGTAGCA 68094 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .AGAATACAA TATGCAAAGA CGAAATCTGA TGTTGTAGCA 342 AAAGCCGATG GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA TAAAGGTAAG 68154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAAGCCGATG GTACTTTTGT TCCCCGAGAA AAAAGAAAGA GGCACGAGGA TAAAG..... 397 TTCTTTCATT TGAAAATTTT CTAGTTCCAC TATTCGTTTG AATCCCTAGA GAAGGCTGGA 68214 .......... .......... .......... .......... .......... .......... 397 CTATACATCT AAGACATGTC ATTTCATAAA GTTTGCTACA TACTGTTTGC TATAAGCTAC 68274 .......... .......... .......... .......... .......... .......... 397 ATATAATAAT GGGCAGACAA ATTTTACCCG TCAACTTCTG TACTTGTGAT TAGCTCCCCC 68334 .......... .......... .......... .......... .......... .......... 397 CCCCCCCCCC CCCTCCCCCC TTCCTTTCGT ACGACCCAAC CACATCCCTA AATAAAAAAG 68394 .......... .......... .......... .......... .......... .......... 397 TAGTGGAAGT ACAATTACTT GACTATTGCA ATATTTTTAG CTATTCATTT ACTGTGATCC 68454 .......... .......... .......... .......... .......... .......... 397 AGCAGGGAGA AAGAAGAAGG ACCAGCAAGA TGCTAATCAA GCTGGAATGG GCCGGAATCC 68514 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GGAGA AAGAAGAAGG ACCAGCAAGA TGCTAATCAA GCTGGAATGG GCCGGAATCC 452 TGCATATGCT GGTGCTTATG GTGCAGCACC TCCTGTAAGC ATTTTCCCTT CTTTTCAGAA 68574 |||||||||| |||||||||| |||||||||| |||| TGCATATGCT GGTGCTTATG GTGCAGCACC TCCT...... .......... .......... 486 ACTTTGTTTA GTTTCCTGTT TTCTGCGTCA TATATTGAAT TAATGGGATT GTATCATCTC 68634 .......... .......... .......... .......... .......... .......... 486 TTTTCCTGTC ACCACACTAT ACGAAGTTTA TCAGATGATG TGATTTTGAT TTCGTTTTGA 68694 .......... .......... .......... .......... .......... .......... 486 AAGATGTAAT CTGATTTTCC TATTAAGCAC ACTAACACAT TTCTTGGGGT GAAATGAAAA 68754 .......... .......... .......... .......... .......... .......... 486 CGGGAGCAAT ACTTGAAAAT GATCCATGTT GCATGGATAG TAGAAGTTAT GTAGTTAAGA 68814 .......... .......... .......... .......... .......... .......... 486 GTTAGAAGTT TGTTGCTGGG TTCTTGATTA GTTTGTGATT TGTCTCTCAT TTTGGTGAAA 68874 .......... .......... .......... .......... .......... .......... 486 TCTTGATGTA TTGAGTTACA CCCTTCTAAT GCATAGAGGT TTAAAATGTA GTCAATTAGT 68934 .......... .......... .......... .......... .......... .......... 486 GCTTAATTGT GATTTTCTTA GATGCTTTTA CCAGAAACTT CCTCAAATGT AATTGTTTCC 68994 .......... .......... .......... .......... .......... .......... 486 CCTTCTCCAC TTGTTGCAGT TCTCACAAAT ACCATACATG GGTGGAGCTA AAGCTGCAGT 69054 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T TCTCACAAAT ACCATACATG GGTGGAGCTA AAGCTGCAGT 527 ACC 69057 ||| ACC 530 hqPGS_C09HBa0278J12.1+_SGN-E272699+ (63955 64084,64183 64355,68056 68149,68460 68548,69014 69057) ******************************************************************************** EST sequence 77 -strand 357 n (File: SGN-E392622-) 1 AAAAAAAAGA TTCTTTGGAT CCATTTCTGA TGAGTTTTCC GGTGAGAAAA ATGTACAGAA 61 TCAGAGGAAG AAGATGAAGA TAAGCGACGG CTTAATACCC TCCAAAGAAT TTTGTTGGTT 121 TTGTTAAAGT TGGTGTCAAT ATAATAATAC TATGTTTATT TTTTTGCCTA TTTGTTGTGT 181 TAGGTGGGTG AGGTGTTTAT AGAGGTTGGT AGAGGTGGAT GTATCAATTT AAGAGTGGAT 241 AAATTTTTGT ACGAGTCAAT TTATTTGTCT GATTTTGAAT CGATATGAAA TTTAAAAAAG 301 TCAACATAAC TATCTAAAAT AGAGAGATTA TTTTTGAAAA GAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 83986 to 82169): Exon 1 83302 82969 ( 334 n); cDNA 3 337 ( 335 n); score: 0.981 PPA cDNA 338 357 MATCH C09HBa0278J12.1- SGN-E392622- 0.981 334 0.936 C PGS_C09HBa0278J12.1-_SGN-E392622- (83302 82969) Alignment (genomic DNA sequence = upper lines): AAAATTGATT CTTTGGATCC ATTTCTGATG AGTTTTCCGG TGAGAAAAAT GTACAGAATC 83243 |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGATT CTTTGGATCC ATTTCTGATG AGTTTTCCGG TGAGAAAAAT GTACAGAATC 62 AGAGGAAGAA GATGAAGATA AGCGACGGCT TAATACCCTC CAAAGAATTT TGTTGGTTTT 83183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGAA GATGAAGATA AGCGACGGCT TAATACCCTC CAAAGAATTT TGTTGGTTTT 122 GTTAAAGTTG GTGTCAATAT AATAATACTA TGTTTATTTT TTTGCCTATT TGTTGTGTTA 83123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAAAGTTG GTGTCAATAT AATAATACTA TGTTTATTTT TTTGCCTATT TGTTGTGTTA 182 GGTGGGTGAG GTGTTTATAG AGGTTGGTAG AGGTGGATGT ATCAATTTAA GAGTGGATAA 83063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGGTGAG GTGTTTATAG AGGTTGGTAG AGGTGGATGT ATCAATTTAA GAGTGGATAA 242 ATTTTTGTAC GAGTCAATTT ATTTGTCTGA TTTTGAATCG ATATGAAATT TAAGAAAATC 83003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| || ATTTTTGTAC GAGTCAATTT ATTTGTCTGA TTTTGAATCG ATATGAAATT TAAAAAAGTC 302 AA-ATAACTA TCTAAAATAG AGAGATTATT TTTGA 82969 || ||||||| |||||||||| |||||||||| ||||| AACATAACTA TCTAAAATAG AGAGATTATT TTTGA 337 hqPGS_C09HBa0278J12.1-_SGN-E392622- (83302 82969) ******************************************************************************** EST sequence 219 -strand 509 n (File: SGN-E201782-) 1 AAATAGGCAA AAAAATAAAC ATAGTATTAT TATATTGACA CCAACTTTAA CAAAACCAAC 61 AAAATTCTTT GGAGGGTATT AAGCCGTCGC TTATCTTCAT CTTCTTCCTC TGATTCTGTA 121 CATTTTTCTC ACCGGAAAAC TCATCAGAAA TGGATCCAAA GAATCAATTT TCCGATAACT 181 CAGAAGCCCA AACACCTCAA GAAGAACAAC AGCAGACACC CATTTTACCG ATAGCTTCAA 241 TTTCACTTGC TTTATCCACA ATCCTTCCAA CCCATTTCCT TAATCCTCCT AAAATCTCAA 301 CCCTTTTCAA CAAACCAAAC AAAGTCAAAA TCCCAACTCA AGTTTCATCT CTTACAAATC 361 TCTCACTTTC AGCTTCTTCT CTTCCACCTA CAAATTCCAA ATTCAAGTCC ACTATTTCTG 421 CTAACCCTCT TCAGAATACT CTAACTCTTA ACCCTCTTCG TCCTTCTGAG CCTTCTAATG 481 CTGCTGGGCT TCGACGAGCG TCGATTGTT Predicted gene structure (within gDNA segment 82522 to 84240): Exon 1 83132 83640 ( 509 n); cDNA 1 509 ( 509 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E201782- 1.000 509 1.000 C PGS_C09HBa0278J12.1+_SGN-E201782- (83132 83640) Alignment (genomic DNA sequence = upper lines): AAATAGGCAA AAAAATAAAC ATAGTATTAT TATATTGACA CCAACTTTAA CAAAACCAAC 83191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAGGCAA AAAAATAAAC ATAGTATTAT TATATTGACA CCAACTTTAA CAAAACCAAC 60 AAAATTCTTT GGAGGGTATT AAGCCGTCGC TTATCTTCAT CTTCTTCCTC TGATTCTGTA 83251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTCTTT GGAGGGTATT AAGCCGTCGC TTATCTTCAT CTTCTTCCTC TGATTCTGTA 120 CATTTTTCTC ACCGGAAAAC TCATCAGAAA TGGATCCAAA GAATCAATTT TCCGATAACT 83311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTTCTC ACCGGAAAAC TCATCAGAAA TGGATCCAAA GAATCAATTT TCCGATAACT 180 CAGAAGCCCA AACACCTCAA GAAGAACAAC AGCAGACACC CATTTTACCG ATAGCTTCAA 83371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAGCCCA AACACCTCAA GAAGAACAAC AGCAGACACC CATTTTACCG ATAGCTTCAA 240 TTTCACTTGC TTTATCCACA ATCCTTCCAA CCCATTTCCT TAATCCTCCT AAAATCTCAA 83431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCACTTGC TTTATCCACA ATCCTTCCAA CCCATTTCCT TAATCCTCCT AAAATCTCAA 300 CCCTTTTCAA CAAACCAAAC AAAGTCAAAA TCCCAACTCA AGTTTCATCT CTTACAAATC 83491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTTTCAA CAAACCAAAC AAAGTCAAAA TCCCAACTCA AGTTTCATCT CTTACAAATC 360 TCTCACTTTC AGCTTCTTCT CTTCCACCTA CAAATTCCAA ATTCAAGTCC ACTATTTCTG 83551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCACTTTC AGCTTCTTCT CTTCCACCTA CAAATTCCAA ATTCAAGTCC ACTATTTCTG 420 CTAACCCTCT TCAGAATACT CTAACTCTTA ACCCTCTTCG TCCTTCTGAG CCTTCTAATG 83611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACCCTCT TCAGAATACT CTAACTCTTA ACCCTCTTCG TCCTTCTGAG CCTTCTAATG 480 CTGCTGGGCT TCGACGAGCG TCGATTGTT 83640 |||||||||| |||||||||| ||||||||| CTGCTGGGCT TCGACGAGCG TCGATTGTT 509 hqPGS_C09HBa0278J12.1+_SGN-E201782- (83132 83640) ******************************************************************************** EST sequence 146 +strand 332 n (File: SGN-E283968+) 1 ACAAAACCAA CAAAATTCTT TGGAGGGTAT TAAGCCGTCG CTTATCTTCA TCTTCTTCCT 61 CTGATTCTGT ACATTTTTCT CACCGGAAAA CTCATCAGAA ATGGATCCAA AGAATCAATT 121 TTCCGATAAC TCAGAAGCCC AAACACCTCA AGAAGAACAA CAGCAGACAC CCATTTTACC 181 GATAGCTTCA ATTTCACTTG CTTTATCCAC AATCCTTCCA ACCCATTTCC TTAATCCTCC 241 TAAAATCTCA ACCCTTTTCA ACAAACCAAA CAAAGTCAAA ATCCCAACTC AAGTTTCATC 301 TCTTACAAAT CTCTCACTTT CAGCTTCTTC TC Predicted gene structure (within gDNA segment 82581 to 84122): Exon 1 83181 83512 ( 332 n); cDNA 1 332 ( 332 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E283968+ 1.000 332 1.000 C PGS_C09HBa0278J12.1+_SGN-E283968+ (83181 83512) Alignment (genomic DNA sequence = upper lines): ACAAAACCAA CAAAATTCTT TGGAGGGTAT TAAGCCGTCG CTTATCTTCA TCTTCTTCCT 83240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAACCAA CAAAATTCTT TGGAGGGTAT TAAGCCGTCG CTTATCTTCA TCTTCTTCCT 60 CTGATTCTGT ACATTTTTCT CACCGGAAAA CTCATCAGAA ATGGATCCAA AGAATCAATT 83300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATTCTGT ACATTTTTCT CACCGGAAAA CTCATCAGAA ATGGATCCAA AGAATCAATT 120 TTCCGATAAC TCAGAAGCCC AAACACCTCA AGAAGAACAA CAGCAGACAC CCATTTTACC 83360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGATAAC TCAGAAGCCC AAACACCTCA AGAAGAACAA CAGCAGACAC CCATTTTACC 180 GATAGCTTCA ATTTCACTTG CTTTATCCAC AATCCTTCCA ACCCATTTCC TTAATCCTCC 83420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGCTTCA ATTTCACTTG CTTTATCCAC AATCCTTCCA ACCCATTTCC TTAATCCTCC 240 TAAAATCTCA ACCCTTTTCA ACAAACCAAA CAAAGTCAAA ATCCCAACTC AAGTTTCATC 83480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATCTCA ACCCTTTTCA ACAAACCAAA CAAAGTCAAA ATCCCAACTC AAGTTTCATC 300 TCTTACAAAT CTCTCACTTT CAGCTTCTTC TC 83512 |||||||||| |||||||||| |||||||||| || TCTTACAAAT CTCTCACTTT CAGCTTCTTC TC 332 hqPGS_C09HBa0278J12.1+_SGN-E283968+ (83181 83512) ******************************************************************************** EST sequence 145 +strand 500 n (File: SGN-E284051+) 1 AAGAATCTAC AGGCAAGAGG GTCTGATCTT GTTGTTAGAA TTGGGAAGCC GGAGACTGTG 61 TTGGTGGAAT TAGCTAAAGC TGTTGGAGCT GAAGCTGTGT ATGCTCATAG GGAGGTTTCA 121 CATGATGAGG TTAAAGGGGA AGATAAGATT GATGCTGTAA TGAAGGATGA GGGTTTGGAG 181 GTGAAGTATT TCTGGGGTAG TACATTGTAT CATGTTGATG ATTTGCCTTT TAAGTTGGAG 241 CAAATGCCTA CGAATTACGG AGGCTTTAGG GAGAAAGTGC AGGGATTGGA GGTAAGGAAG 301 ACAATTGAGG CATTGGATCA ATTGAGGGGA TTGCCTGCTA GAGGTGATGT GGAACCTGGG 361 GAGATTCCTT CGATGGTTGA TTTGGGGCTC AATCCTAGTG CCACCATGGG TCAGAATGGA 421 GAATCAGCTG CTAATGCTTC CCTTGTGGGA GGAGAGAATG AAGCACTGCT GAGACTTAGA 481 AAATTTGCAG CAGAATGTCA Predicted gene structure (within gDNA segment 83224 to 86232): Exon 1 83824 84237 ( 414 n); cDNA 1 414 ( 414 n); score: 0.998 Intron 1 84238 85536 (1299 n); Pd: 0.941 (s: 0.98), Pa: 0.998 (s: 0.98) Exon 2 85537 85622 ( 86 n); cDNA 415 500 ( 86 n); score: 0.965 MATCH C09HBa0278J12.1+ SGN-E284051+ 0.992 500 1.000 C PGS_C09HBa0278J12.1+_SGN-E284051+ (83824 84237,85537 85622) Alignment (genomic DNA sequence = upper lines): AAGAATCTAC AGGCAAGAGG GTCTGATCTT GTTGTTAGAA TTGGGAAGCC GGAGACTGTG 83883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCTAC AGGCAAGAGG GTCTGATCTT GTTGTTAGAA TTGGGAAGCC GGAGACTGTG 60 TTGGTGGAAT TAGCTAAAGC TGTTGGAGCT GAAGCTGTGT ATGCTCATAG GGAGGTTTCA 83943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGGAAT TAGCTAAAGC TGTTGGAGCT GAAGCTGTGT ATGCTCATAG GGAGGTTTCA 120 CATGATGAGG TTAAAGGGGA AGATAAGATT GATGCTGTAA TGAAGGATGA GGGTTTGGAG 84003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATGAGG TTAAAGGGGA AGATAAGATT GATGCTGTAA TGAAGGATGA GGGTTTGGAG 180 GTGAAGTATT TCTGGGGTAG TACATTGTAT CATGTTGATG ATTTGCCTTT TAAGTTGGAG 84063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGTATT TCTGGGGTAG TACATTGTAT CATGTTGATG ATTTGCCTTT TAAGTTGGAG 240 CAAATGCCTA CGAATTACGG AGGCTTTAGG GAGAAAGTGC AGGGATTGGA GGTAAGGAAG 84123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGCCTA CGAATTACGG AGGCTTTAGG GAGAAAGTGC AGGGATTGGA GGTAAGGAAG 300 ACAATTGAGG CATTGGATCA ATTGAGGGGA TTGCCTGCTA GAGGTGATGT GGAACCTGGG 84183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGAGG CATTGGATCA ATTGAGGGGA TTGCCTGCTA GAGGTGATGT GGAACCTGGG 360 GAGATTCCTT CGTTGGTTGA TTTGGGGCTC AATCCTAGTG CCACCATGGG TCAGGTATTA 84243 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||| GAGATTCCTT CGATGGTTGA TTTGGGGCTC AATCCTAGTG CCACCATGGG TCAG...... 414 CTTTGTTCGA TCTCAAATAT CGTAGAGGAT TTAGGTTTAT TCAGTATTGG ATGAAAGTAG 84303 .......... .......... .......... .......... .......... .......... 414 TTTTACCTTT GATGTCAAAG AACTTGTAAT TTAACTGAAA TGACATATTT GCGAGTGTTG 84363 .......... .......... .......... .......... .......... .......... 414 GAATGAAACT GGTGTAAATG TAGTGTAACC GATAATAAGG ATGATTCATA TAGTTGAACC 84423 .......... .......... .......... .......... .......... .......... 414 CAACAAGTTT GAGATTGAGC TACACTAGTA GTCCTTTAGT TTCACGTAGT TTTCCGTTTC 84483 .......... .......... .......... .......... .......... .......... 414 TTAGACACTT CATTGGAAGT GGTAGAGATG ATCAAGATTC CATTTTTATA CGAATGGAAG 84543 .......... .......... .......... .......... .......... .......... 414 TGATTCAAGT CAGAAATAAC TGATGGTTTA ATTCAACATA TCTCTTGTAT ATGTATTCTG 84603 .......... .......... .......... .......... .......... .......... 414 AACATTTGTT AGATAAAACC ACATGTTTTA AGTAGGTTTA GTATTTGGCG TTTGAACATC 84663 .......... .......... .......... .......... .......... .......... 414 AGTAATTTAA ATGATCCTTG CTCTATCGTG TAGTGTCCTT CTATAGTTGT GTGCAGTGTT 84723 .......... .......... .......... .......... .......... .......... 414 CAGGAAAGCA AGGCGAAGCA ATGCGAGCCT TCTACGCTTC ACAAACTAGA ATGAGTATGT 84783 .......... .......... .......... .......... .......... .......... 414 GAGTGCTTCA TCGCCTAAAG CGTGAAGCAG GGCCTTATCA CTTTTTTCCA CTTCCTACTT 84843 .......... .......... .......... .......... .......... .......... 414 CCCTGAACAC TGGTTGTGTA CACTGAGTAT CCAGCTCATA GCTGTGACAT TTTGTTGATC 84903 .......... .......... .......... .......... .......... .......... 414 AATATGTTAA TGTACTTCTT ATCAGGCCGT CACCAACTAG GACACTACAC ACCAACTATA 84963 .......... .......... .......... .......... .......... .......... 414 GTGCTCATAG AATAGACCAA AGAACTCTTA TTTGTTAGCC TGAGAATATG TAATGTAGAA 85023 .......... .......... .......... .......... .......... .......... 414 AGAACATCTT TTAGCCACGT TTGGAGGTTA CTTTTTTAGT ATTGCCTGTA GCACAGGCCA 85083 .......... .......... .......... .......... .......... .......... 414 CAGTGCACAA TCACTTAAGA ACTGTTGCTT GAATTTTGTA ATTGCCTTAC TGTATTGTAA 85143 .......... .......... .......... .......... .......... .......... 414 CTTTGGAACT GTAAGTTGTT TCACATCACA AACTAGTCAA ACAAAGTTTA TTTGTTTCAG 85203 .......... .......... .......... .......... .......... .......... 414 TTACTTTGCA AACTATGGCA AACATGAACA TTTCTTTATC TTTGCATAAT CATTTGCATT 85263 .......... .......... .......... .......... .......... .......... 414 TGCACATCAT TTAGAATGAC TAATGCTTCC CTTGTGGGAG GAGAGAATGA AGCACTGCAG 85323 .......... .......... .......... .......... .......... .......... 414 AGACTTCAAT TTTGTAGTTG CCATACTGTA TTTTTCACCG ACTTGAATTT TGTAATTGCT 85383 .......... .......... .......... .......... .......... .......... 414 GTACTGTATT TAAACTTTCG GAGTTGTCAG TTGTTTAACA TCACAAACTA GTCAAAAAAA 85443 .......... .......... .......... .......... .......... .......... 414 GTTGATTCAT TTCAGTTATT TCGCTAACTA TTGTAAACAT GAACATTTCT TTATCTTGGT 85503 .......... .......... .......... .......... .......... .......... 414 ATACTTAATC ATTTGCATTT GCCAACCATT TAGAATGGAA AATCAGCTGC TAATGCTTCC 85563 |||||| |||||||||| |||||||||| .......... .......... .......... ...AATGGAG AATCAGCTGC TAATGCTTCC 441 CTTGTGGGAG GAGAGAATGA AGCACTGCAA AGACTTAGAA AATTTGCAGC AGAATGTCA 85622 |||||||||| |||||||||| |||||||| |||||||||| |||||||||| ||||||||| CTTGTGGGAG GAGAGAATGA AGCACTGCTG AGACTTAGAA AATTTGCAGC AGAATGTCA 500 hqPGS_C09HBa0278J12.1+_SGN-E284051+ (83824 84237,85537 85622) ******************************************************************************** EST sequence 153 +strand 397 n (File: SGN-E294287+) 1 GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TGAAGGGGAA 61 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 121 ACATTGTATC ATGTTGATGA TTAGCCTTTT AAGTTGGAGC AAATGCCTAC CAATTACGGA 181 GGCTTTATGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CACTTGAGGC ATTGGATCAA 241 TTGAGGGGAT TGCCTGCTAG ATGTGATGTG GAACCTGGGG AGATTCCTTC GTTGATTGAT 301 TTGGGGCTCA ATCCTACTGC CACTCATGGG TCAGAATGGA AAATCAGCTG CTAATGCTTC 361 CCTTGTGGGA GGAGAGAATG AAGCACTGTA CAGACTT Predicted gene structure (within gDNA segment 83305 to 86290): Exon 1 83905 84237 ( 333 n); cDNA 1 334 ( 334 n); score: 0.968 Intron 1 84238 85536 (1299 n); Pd: 0.941 (s: 0.91), Pa: 0.998 (s: 1.00) Exon 2 85537 85599 ( 63 n); cDNA 335 397 ( 63 n); score: 0.968 MATCH C09HBa0278J12.1+ SGN-E294287+ 0.968 396 0.997 C PGS_C09HBa0278J12.1+_SGN-E294287+ (83905 84237,85537 85599) Alignment (genomic DNA sequence = upper lines): GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA 83964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TGAAGGGGAA 60 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 84024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 120 ACATTGTATC ATGTTGATGA TTTGCCTTTT AAGTTGGAGC AAATGCCTAC GAATTACGGA 84084 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| ACATTGTATC ATGTTGATGA TTAGCCTTTT AAGTTGGAGC AAATGCCTAC CAATTACGGA 180 GGCTTTAGGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CAATTGAGGC ATTGGATCAA 84144 ||||||| || |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGCTTTATGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CACTTGAGGC ATTGGATCAA 240 TTGAGGGGAT TGCCTGCTAG AGGTGATGTG GAACCTGGGG AGATTCCTTC GTTGGTTGAT 84204 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||| ||||| TTGAGGGGAT TGCCTGCTAG ATGTGATGTG GAACCTGGGG AGATTCCTTC GTTGATTGAT 300 TTGGGGCTCA ATCCTAGTGC CAC-CATGGG TCAGGTATTA CTTTGTTCGA TCTCAAATAT 84263 |||||||||| |||||| ||| ||| |||||| |||| TTGGGGCTCA ATCCTACTGC CACTCATGGG TCAG...... .......... .......... 334 CGTAGAGGAT TTAGGTTTAT TCAGTATTGG ATGAAAGTAG TTTTACCTTT GATGTCAAAG 84323 .......... .......... .......... .......... .......... .......... 334 AACTTGTAAT TTAACTGAAA TGACATATTT GCGAGTGTTG GAATGAAACT GGTGTAAATG 84383 .......... .......... .......... .......... .......... .......... 334 TAGTGTAACC GATAATAAGG ATGATTCATA TAGTTGAACC CAACAAGTTT GAGATTGAGC 84443 .......... .......... .......... .......... .......... .......... 334 TACACTAGTA GTCCTTTAGT TTCACGTAGT TTTCCGTTTC TTAGACACTT CATTGGAAGT 84503 .......... .......... .......... .......... .......... .......... 334 GGTAGAGATG ATCAAGATTC CATTTTTATA CGAATGGAAG TGATTCAAGT CAGAAATAAC 84563 .......... .......... .......... .......... .......... .......... 334 TGATGGTTTA ATTCAACATA TCTCTTGTAT ATGTATTCTG AACATTTGTT AGATAAAACC 84623 .......... .......... .......... .......... .......... .......... 334 ACATGTTTTA AGTAGGTTTA GTATTTGGCG TTTGAACATC AGTAATTTAA ATGATCCTTG 84683 .......... .......... .......... .......... .......... .......... 334 CTCTATCGTG TAGTGTCCTT CTATAGTTGT GTGCAGTGTT CAGGAAAGCA AGGCGAAGCA 84743 .......... .......... .......... .......... .......... .......... 334 ATGCGAGCCT TCTACGCTTC ACAAACTAGA ATGAGTATGT GAGTGCTTCA TCGCCTAAAG 84803 .......... .......... .......... .......... .......... .......... 334 CGTGAAGCAG GGCCTTATCA CTTTTTTCCA CTTCCTACTT CCCTGAACAC TGGTTGTGTA 84863 .......... .......... .......... .......... .......... .......... 334 CACTGAGTAT CCAGCTCATA GCTGTGACAT TTTGTTGATC AATATGTTAA TGTACTTCTT 84923 .......... .......... .......... .......... .......... .......... 334 ATCAGGCCGT CACCAACTAG GACACTACAC ACCAACTATA GTGCTCATAG AATAGACCAA 84983 .......... .......... .......... .......... .......... .......... 334 AGAACTCTTA TTTGTTAGCC TGAGAATATG TAATGTAGAA AGAACATCTT TTAGCCACGT 85043 .......... .......... .......... .......... .......... .......... 334 TTGGAGGTTA CTTTTTTAGT ATTGCCTGTA GCACAGGCCA CAGTGCACAA TCACTTAAGA 85103 .......... .......... .......... .......... .......... .......... 334 ACTGTTGCTT GAATTTTGTA ATTGCCTTAC TGTATTGTAA CTTTGGAACT GTAAGTTGTT 85163 .......... .......... .......... .......... .......... .......... 334 TCACATCACA AACTAGTCAA ACAAAGTTTA TTTGTTTCAG TTACTTTGCA AACTATGGCA 85223 .......... .......... .......... .......... .......... .......... 334 AACATGAACA TTTCTTTATC TTTGCATAAT CATTTGCATT TGCACATCAT TTAGAATGAC 85283 .......... .......... .......... .......... .......... .......... 334 TAATGCTTCC CTTGTGGGAG GAGAGAATGA AGCACTGCAG AGACTTCAAT TTTGTAGTTG 85343 .......... .......... .......... .......... .......... .......... 334 CCATACTGTA TTTTTCACCG ACTTGAATTT TGTAATTGCT GTACTGTATT TAAACTTTCG 85403 .......... .......... .......... .......... .......... .......... 334 GAGTTGTCAG TTGTTTAACA TCACAAACTA GTCAAAAAAA GTTGATTCAT TTCAGTTATT 85463 .......... .......... .......... .......... .......... .......... 334 TCGCTAACTA TTGTAAACAT GAACATTTCT TTATCTTGGT ATACTTAATC ATTTGCATTT 85523 .......... .......... .......... .......... .......... .......... 334 GCCAACCATT TAGAATGGAA AATCAGCTGC TAATGCTTCC CTTGTGGGAG GAGAGAATGA 85583 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...AATGGAA AATCAGCTGC TAATGCTTCC CTTGTGGGAG GAGAGAATGA 381 AGCACTGCAA AGACTT 85599 ||||||| | |||||| AGCACTGTAC AGACTT 397 hqPGS_C09HBa0278J12.1+_SGN-E294287+ (83905 84237,85537 85599) ******************************************************************************** EST sequence 154 +strand 397 n (File: SGN-E294288+) 1 GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TGAAGGGGAA 61 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 121 ACATTGTATC ATGTTGATGA TTAGCCTTTT AAGTTGGAGC AAATGCCTAC CAATTACGGA 181 GGCTTTATGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CACTTGAGGC ATTGGATCAA 241 TTGAGGGGAT TGCCTGCTAG ATGTGATGTG GAACCTGGGG AGATTCCTTC GTTGATTGAT 301 TTGGGGCTCA ATCCTACTGC CACTCATGGG TCAGAATGGA AAATCAGCTG CTAATGCTTC 361 CCTTGTGGGA GGAGAGAATG AAGCACTGTA CAGACTT Predicted gene structure (within gDNA segment 83305 to 86290): Exon 1 83905 84237 ( 333 n); cDNA 1 334 ( 334 n); score: 0.968 Intron 1 84238 85536 (1299 n); Pd: 0.941 (s: 0.91), Pa: 0.998 (s: 1.00) Exon 2 85537 85599 ( 63 n); cDNA 335 397 ( 63 n); score: 0.968 MATCH C09HBa0278J12.1+ SGN-E294288+ 0.968 396 0.997 C PGS_C09HBa0278J12.1+_SGN-E294288+ (83905 84237,85537 85599) Alignment (genomic DNA sequence = upper lines): GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA 83964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TGAAGGGGAA 60 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 84024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 120 ACATTGTATC ATGTTGATGA TTTGCCTTTT AAGTTGGAGC AAATGCCTAC GAATTACGGA 84084 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| ACATTGTATC ATGTTGATGA TTAGCCTTTT AAGTTGGAGC AAATGCCTAC CAATTACGGA 180 GGCTTTAGGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CAATTGAGGC ATTGGATCAA 84144 ||||||| || |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGCTTTATGG AGAAAGTGCA GGGATTGGAG GTAAGGAAGA CACTTGAGGC ATTGGATCAA 240 TTGAGGGGAT TGCCTGCTAG AGGTGATGTG GAACCTGGGG AGATTCCTTC GTTGGTTGAT 84204 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||| ||||| TTGAGGGGAT TGCCTGCTAG ATGTGATGTG GAACCTGGGG AGATTCCTTC GTTGATTGAT 300 TTGGGGCTCA ATCCTAGTGC CAC-CATGGG TCAGGTATTA CTTTGTTCGA TCTCAAATAT 84263 |||||||||| |||||| ||| ||| |||||| |||| TTGGGGCTCA ATCCTACTGC CACTCATGGG TCAG...... .......... .......... 334 CGTAGAGGAT TTAGGTTTAT TCAGTATTGG ATGAAAGTAG TTTTACCTTT GATGTCAAAG 84323 .......... .......... .......... .......... .......... .......... 334 AACTTGTAAT TTAACTGAAA TGACATATTT GCGAGTGTTG GAATGAAACT GGTGTAAATG 84383 .......... .......... .......... .......... .......... .......... 334 TAGTGTAACC GATAATAAGG ATGATTCATA TAGTTGAACC CAACAAGTTT GAGATTGAGC 84443 .......... .......... .......... .......... .......... .......... 334 TACACTAGTA GTCCTTTAGT TTCACGTAGT TTTCCGTTTC TTAGACACTT CATTGGAAGT 84503 .......... .......... .......... .......... .......... .......... 334 GGTAGAGATG ATCAAGATTC CATTTTTATA CGAATGGAAG TGATTCAAGT CAGAAATAAC 84563 .......... .......... .......... .......... .......... .......... 334 TGATGGTTTA ATTCAACATA TCTCTTGTAT ATGTATTCTG AACATTTGTT AGATAAAACC 84623 .......... .......... .......... .......... .......... .......... 334 ACATGTTTTA AGTAGGTTTA GTATTTGGCG TTTGAACATC AGTAATTTAA ATGATCCTTG 84683 .......... .......... .......... .......... .......... .......... 334 CTCTATCGTG TAGTGTCCTT CTATAGTTGT GTGCAGTGTT CAGGAAAGCA AGGCGAAGCA 84743 .......... .......... .......... .......... .......... .......... 334 ATGCGAGCCT TCTACGCTTC ACAAACTAGA ATGAGTATGT GAGTGCTTCA TCGCCTAAAG 84803 .......... .......... .......... .......... .......... .......... 334 CGTGAAGCAG GGCCTTATCA CTTTTTTCCA CTTCCTACTT CCCTGAACAC TGGTTGTGTA 84863 .......... .......... .......... .......... .......... .......... 334 CACTGAGTAT CCAGCTCATA GCTGTGACAT TTTGTTGATC AATATGTTAA TGTACTTCTT 84923 .......... .......... .......... .......... .......... .......... 334 ATCAGGCCGT CACCAACTAG GACACTACAC ACCAACTATA GTGCTCATAG AATAGACCAA 84983 .......... .......... .......... .......... .......... .......... 334 AGAACTCTTA TTTGTTAGCC TGAGAATATG TAATGTAGAA AGAACATCTT TTAGCCACGT 85043 .......... .......... .......... .......... .......... .......... 334 TTGGAGGTTA CTTTTTTAGT ATTGCCTGTA GCACAGGCCA CAGTGCACAA TCACTTAAGA 85103 .......... .......... .......... .......... .......... .......... 334 ACTGTTGCTT GAATTTTGTA ATTGCCTTAC TGTATTGTAA CTTTGGAACT GTAAGTTGTT 85163 .......... .......... .......... .......... .......... .......... 334 TCACATCACA AACTAGTCAA ACAAAGTTTA TTTGTTTCAG TTACTTTGCA AACTATGGCA 85223 .......... .......... .......... .......... .......... .......... 334 AACATGAACA TTTCTTTATC TTTGCATAAT CATTTGCATT TGCACATCAT TTAGAATGAC 85283 .......... .......... .......... .......... .......... .......... 334 TAATGCTTCC CTTGTGGGAG GAGAGAATGA AGCACTGCAG AGACTTCAAT TTTGTAGTTG 85343 .......... .......... .......... .......... .......... .......... 334 CCATACTGTA TTTTTCACCG ACTTGAATTT TGTAATTGCT GTACTGTATT TAAACTTTCG 85403 .......... .......... .......... .......... .......... .......... 334 GAGTTGTCAG TTGTTTAACA TCACAAACTA GTCAAAAAAA GTTGATTCAT TTCAGTTATT 85463 .......... .......... .......... .......... .......... .......... 334 TCGCTAACTA TTGTAAACAT GAACATTTCT TTATCTTGGT ATACTTAATC ATTTGCATTT 85523 .......... .......... .......... .......... .......... .......... 334 GCCAACCATT TAGAATGGAA AATCAGCTGC TAATGCTTCC CTTGTGGGAG GAGAGAATGA 85583 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...AATGGAA AATCAGCTGC TAATGCTTCC CTTGTGGGAG GAGAGAATGA 381 AGCACTGCAA AGACTT 85599 ||||||| | |||||| AGCACTGTAC AGACTT 397 hqPGS_C09HBa0278J12.1+_SGN-E294288+ (83905 84237,85537 85599) ******************************************************************************** EST sequence 287 -strand 245 n (File: SGN-E392372-) 1 TCCAACCCAC TTCCTCAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 61 CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 121 ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 181 TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAA 241 AAATT Predicted gene structure (within gDNA segment 82643 to 84295): Exon 1 83397 83641 ( 245 n); cDNA 1 245 ( 245 n); score: 0.976 MATCH C09HBa0278J12.1+ SGN-E392372- 0.976 245 1.000 C PGS_C09HBa0278J12.1+_SGN-E392372- (83397 83641) Alignment (genomic DNA sequence = upper lines): TCCAACCCAT TTCCTTAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 83456 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACCCAC TTCCTCAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 60 CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 83516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 120 ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 83576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 180 TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAT 83636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAA 240 TGTTT 83641 || AAATT 245 hqPGS_C09HBa0278J12.1+_SGN-E392372- (83397 83641) ******************************************************************************** EST sequence 126 +strand 664 n (File: SGN-E344812+) 1 GGTTTGGAGG TGAAGTATTT CTGGGGTAGT ACATTGTATC ATGTTGATGA TTTGCCTTTT 61 AAGTTGGAGC AAATGCCTAC GAATTACGGA GGCTTTAGGG AGAAAGTGCA GGGATTGGAG 121 GTAAGGAAGA CAATTGAGGC ATTGGATCAA TTGAGGGGAT TGCCTGCTAG AGGTGATGTG 181 GAACCTGGGG AGATTCCTTC GTTGGTTGAT TTGGGGCTCA ATCCTAGTGC CACCATGGGT 241 CAGAATGGAA AATCAGCTGC TAATGCTTCC CTTGTGGGAG GAGAGAATGA AGCACTGCAA 301 AGACTTAGAA AATTTGCAGC AGAATGTCAG GCCCAACCCA GTAAGGAAAA CAAGGATGGC 361 ACAAATGACA GCATATATGG TGCAAACTTT TCTTGCAAAA TATCGCCTTG GTTAGCTATG 421 GGATGTCTCT CACCCCGTTC CATGTTTGAT GAATTGAAGA AGTCCACTTC AAGAACGATT 481 TCTGCTGCCT CTGCCAAGAA AGATGGTGGT AGTGGCACTG GGCTGAACTG GCTGATGTAC 541 GAGCTGTTAT GGAGGGATTT TTTCAGATTC ATCACCAAGA AATATAGTGC TGCAACAAAA 601 ATAGTGCTGC TCCAGTAACT ACTTGCGTAG GAGCTGCTGC TTAACGATGG TATACTCAAA 661 GGAG Predicted gene structure (within gDNA segment 83395 to 86838): Exon 1 83995 84237 ( 243 n); cDNA 1 243 ( 243 n); score: 1.000 Intron 1 84238 85536 (1299 n); Pd: 0.941 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 85537 85766 ( 230 n); cDNA 244 473 ( 230 n); score: 1.000 Intron 2 85767 85858 ( 92 n); Pd: 0.881 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 85859 85951 ( 93 n); cDNA 474 566 ( 93 n); score: 1.000 Intron 3 85952 86093 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 0.96) Exon 4 86094 86193 ( 100 n); cDNA 567 664 ( 98 n); score: 0.970 MATCH C09HBa0278J12.1+ SGN-E344812+ 0.995 666 1.003 C PGS_C09HBa0278J12.1+_SGN-E344812+ (83995 84237,85537 85766,85859 85951,86094 86193) Alignment (genomic DNA sequence = upper lines): GGTTTGGAGG TGAAGTATTT CTGGGGTAGT ACATTGTATC ATGTTGATGA TTTGCCTTTT 84054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTGGAGG TGAAGTATTT CTGGGGTAGT ACATTGTATC ATGTTGATGA TTTGCCTTTT 60 AAGTTGGAGC AAATGCCTAC GAATTACGGA GGCTTTAGGG AGAAAGTGCA GGGATTGGAG 84114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGGAGC AAATGCCTAC GAATTACGGA GGCTTTAGGG AGAAAGTGCA GGGATTGGAG 120 GTAAGGAAGA CAATTGAGGC ATTGGATCAA TTGAGGGGAT TGCCTGCTAG AGGTGATGTG 84174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGGAAGA CAATTGAGGC ATTGGATCAA TTGAGGGGAT TGCCTGCTAG AGGTGATGTG 180 GAACCTGGGG AGATTCCTTC GTTGGTTGAT TTGGGGCTCA ATCCTAGTGC CACCATGGGT 84234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCTGGGG AGATTCCTTC GTTGGTTGAT TTGGGGCTCA ATCCTAGTGC CACCATGGGT 240 CAGGTATTAC TTTGTTCGAT CTCAAATATC GTAGAGGATT TAGGTTTATT CAGTATTGGA 84294 ||| CAG....... .......... .......... .......... .......... .......... 243 TGAAAGTAGT TTTACCTTTG ATGTCAAAGA ACTTGTAATT TAACTGAAAT GACATATTTG 84354 .......... .......... .......... .......... .......... .......... 243 CGAGTGTTGG AATGAAACTG GTGTAAATGT AGTGTAACCG ATAATAAGGA TGATTCATAT 84414 .......... .......... .......... .......... .......... .......... 243 AGTTGAACCC AACAAGTTTG AGATTGAGCT ACACTAGTAG TCCTTTAGTT TCACGTAGTT 84474 .......... .......... .......... .......... .......... .......... 243 TTCCGTTTCT TAGACACTTC ATTGGAAGTG GTAGAGATGA TCAAGATTCC ATTTTTATAC 84534 .......... .......... .......... .......... .......... .......... 243 GAATGGAAGT GATTCAAGTC AGAAATAACT GATGGTTTAA TTCAACATAT CTCTTGTATA 84594 .......... .......... .......... .......... .......... .......... 243 TGTATTCTGA ACATTTGTTA GATAAAACCA CATGTTTTAA GTAGGTTTAG TATTTGGCGT 84654 .......... .......... .......... .......... .......... .......... 243 TTGAACATCA GTAATTTAAA TGATCCTTGC TCTATCGTGT AGTGTCCTTC TATAGTTGTG 84714 .......... .......... .......... .......... .......... .......... 243 TGCAGTGTTC AGGAAAGCAA GGCGAAGCAA TGCGAGCCTT CTACGCTTCA CAAACTAGAA 84774 .......... .......... .......... .......... .......... .......... 243 TGAGTATGTG AGTGCTTCAT CGCCTAAAGC GTGAAGCAGG GCCTTATCAC TTTTTTCCAC 84834 .......... .......... .......... .......... .......... .......... 243 TTCCTACTTC CCTGAACACT GGTTGTGTAC ACTGAGTATC CAGCTCATAG CTGTGACATT 84894 .......... .......... .......... .......... .......... .......... 243 TTGTTGATCA ATATGTTAAT GTACTTCTTA TCAGGCCGTC ACCAACTAGG ACACTACACA 84954 .......... .......... .......... .......... .......... .......... 243 CCAACTATAG TGCTCATAGA ATAGACCAAA GAACTCTTAT TTGTTAGCCT GAGAATATGT 85014 .......... .......... .......... .......... .......... .......... 243 AATGTAGAAA GAACATCTTT TAGCCACGTT TGGAGGTTAC TTTTTTAGTA TTGCCTGTAG 85074 .......... .......... .......... .......... .......... .......... 243 CACAGGCCAC AGTGCACAAT CACTTAAGAA CTGTTGCTTG AATTTTGTAA TTGCCTTACT 85134 .......... .......... .......... .......... .......... .......... 243 GTATTGTAAC TTTGGAACTG TAAGTTGTTT CACATCACAA ACTAGTCAAA CAAAGTTTAT 85194 .......... .......... .......... .......... .......... .......... 243 TTGTTTCAGT TACTTTGCAA ACTATGGCAA ACATGAACAT TTCTTTATCT TTGCATAATC 85254 .......... .......... .......... .......... .......... .......... 243 ATTTGCATTT GCACATCATT TAGAATGACT AATGCTTCCC TTGTGGGAGG AGAGAATGAA 85314 .......... .......... .......... .......... .......... .......... 243 GCACTGCAGA GACTTCAATT TTGTAGTTGC CATACTGTAT TTTTCACCGA CTTGAATTTT 85374 .......... .......... .......... .......... .......... .......... 243 GTAATTGCTG TACTGTATTT AAACTTTCGG AGTTGTCAGT TGTTTAACAT CACAAACTAG 85434 .......... .......... .......... .......... .......... .......... 243 TCAAAAAAAG TTGATTCATT TCAGTTATTT CGCTAACTAT TGTAAACATG AACATTTCTT 85494 .......... .......... .......... .......... .......... .......... 243 TATCTTGGTA TACTTAATCA TTTGCATTTG CCAACCATTT AGAATGGAAA ATCAGCTGCT 85554 |||||||| |||||||||| .......... .......... .......... .......... ..AATGGAAA ATCAGCTGCT 261 AATGCTTCCC TTGTGGGAGG AGAGAATGAA GCACTGCAAA GACTTAGAAA ATTTGCAGCA 85614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTTCCC TTGTGGGAGG AGAGAATGAA GCACTGCAAA GACTTAGAAA ATTTGCAGCA 321 GAATGTCAGG CCCAACCCAG TAAGGAAAAC AAGGATGGCA CAAATGACAG CATATATGGT 85674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTCAGG CCCAACCCAG TAAGGAAAAC AAGGATGGCA CAAATGACAG CATATATGGT 381 GCAAACTTTT CTTGCAAAAT ATCGCCTTGG TTAGCTATGG GATGTCTCTC ACCCCGTTCC 85734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAACTTTT CTTGCAAAAT ATCGCCTTGG TTAGCTATGG GATGTCTCTC ACCCCGTTCC 441 ATGTTTGATG AATTGAAGAA GTCCACTTCA AGGTTAATGT CTTGTCAATA GTTTTCTTAT 85794 |||||||||| |||||||||| |||||||||| || ATGTTTGATG AATTGAAGAA GTCCACTTCA AG........ .......... .......... 473 CCTGATACTA ATGCCTGTGA GACCAATATC ACTGGCTAAC GCTACATTGG TTGTTGTGCT 85854 .......... .......... .......... .......... .......... .......... 473 GCAGAACGAT TTCTGCTGCC TCTGCCAAGA AAGATGGTGG TAGTGGCACT GGGCTGAACT 85914 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....AACGAT TTCTGCTGCC TCTGCCAAGA AAGATGGTGG TAGTGGCACT GGGCTGAACT 529 GGCTGATGTA CGAGCTGTTA TGGAGGGATT TTTTCAGGTA ATTTAGCATG CAACTTAGCT 85974 |||||||||| |||||||||| |||||||||| ||||||| GGCTGATGTA CGAGCTGTTA TGGAGGGATT TTTTCAG... .......... .......... 566 CCTATGATTG AGATGCTTGT TTCAGTTTCG TATAGTGTGA TACTCGTTCC ATCCTTTATG 86034 .......... .......... .......... .......... .......... .......... 566 AAACAATTCC CGTCCTTTAA AATTATTCCT TGGATAACAT TCTGTTTTCT GAATGCCAGA 86094 | .......... .......... .......... .......... .......... .........A 567 TTCATCACCA AGAAATATAG TGCTGCAAAA CAAAATAGTG CTGCTCCAGT AACTACTTGC 86154 |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| TTCATCACCA AGAAATATAG TGCTGCAACA -AAAATAGTG CTGCTCCAGT AACTACTTGC 626 GTAGGAGCTG CTGCTTAACG ATGGTATACT CAAAAGGAG 86193 |||||||||| |||||||||| |||||||||| | ||||||| GTAGGAGCTG CTGCTTAACG ATGGTATACT C-AAAGGAG 664 hqPGS_C09HBa0278J12.1+_SGN-E344812+ (83995 84237,85537 85766,85859 85951,86094 86193) ******************************************************************************** EST sequence 42 +strand 533 n (File: SGN-E253410+) 1 ACCAACAAAA TTCTTTGGAG GGTATTAAGC CGTCGCTTAT CTTCATCTTC TTCCTCTGAT 61 TCTGTACATT TTTCTCACCG GAAAACTCAT CAGAAATGGA TCCAAAGAAT CAATTTTCCG 121 ATAACTCAGA AGCCCAAACA CCTCAAGAAG AACAACAGCA GACACCCATT TTACCGATAG 181 CTTCAATTTC ACTTGCTTTA TCCACAATCC TTCCAACCCA TTTCCTTAAT CCTCCTAAAA 241 TCTCAACCCT TTTCAACAAA CCAAACAAAG TCAAAATCCC AACTCAAGTT TCATCTCTTA 301 CAAATCTCTC ACTTTCAGCT TCTTCTCTTC CACCTACAAA TTCCAAATTC AAGTCCACTA 361 TTTCTGCTAA CCCTCTTCAG AATACTCTAA CTCTTAACCC TCTTCGTCCT TCTGAGCCTT 421 CTAATGCTGC TGGGCTTCGA CGAGCGTCGA TTGTTTGGTT CCGTAACGAT CTTCGTGTTC 481 ATGATAATGA GTGTCTTAAC GCGGCTCATA ATGAGTCCAT GTCTGTATTG GCT Predicted gene structure (within gDNA segment 82586 to 84328): Exon 1 83186 83718 ( 533 n); cDNA 1 533 ( 533 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E253410+ 1.000 533 1.000 C PGS_C09HBa0278J12.1+_SGN-E253410+ (83186 83718) Alignment (genomic DNA sequence = upper lines): ACCAACAAAA TTCTTTGGAG GGTATTAAGC CGTCGCTTAT CTTCATCTTC TTCCTCTGAT 83245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAACAAAA TTCTTTGGAG GGTATTAAGC CGTCGCTTAT CTTCATCTTC TTCCTCTGAT 60 TCTGTACATT TTTCTCACCG GAAAACTCAT CAGAAATGGA TCCAAAGAAT CAATTTTCCG 83305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACATT TTTCTCACCG GAAAACTCAT CAGAAATGGA TCCAAAGAAT CAATTTTCCG 120 ATAACTCAGA AGCCCAAACA CCTCAAGAAG AACAACAGCA GACACCCATT TTACCGATAG 83365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTCAGA AGCCCAAACA CCTCAAGAAG AACAACAGCA GACACCCATT TTACCGATAG 180 CTTCAATTTC ACTTGCTTTA TCCACAATCC TTCCAACCCA TTTCCTTAAT CCTCCTAAAA 83425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATTTC ACTTGCTTTA TCCACAATCC TTCCAACCCA TTTCCTTAAT CCTCCTAAAA 240 TCTCAACCCT TTTCAACAAA CCAAACAAAG TCAAAATCCC AACTCAAGTT TCATCTCTTA 83485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAACCCT TTTCAACAAA CCAAACAAAG TCAAAATCCC AACTCAAGTT TCATCTCTTA 300 CAAATCTCTC ACTTTCAGCT TCTTCTCTTC CACCTACAAA TTCCAAATTC AAGTCCACTA 83545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCTCTC ACTTTCAGCT TCTTCTCTTC CACCTACAAA TTCCAAATTC AAGTCCACTA 360 TTTCTGCTAA CCCTCTTCAG AATACTCTAA CTCTTAACCC TCTTCGTCCT TCTGAGCCTT 83605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTGCTAA CCCTCTTCAG AATACTCTAA CTCTTAACCC TCTTCGTCCT TCTGAGCCTT 420 CTAATGCTGC TGGGCTTCGA CGAGCGTCGA TTGTTTGGTT CCGTAACGAT CTTCGTGTTC 83665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATGCTGC TGGGCTTCGA CGAGCGTCGA TTGTTTGGTT CCGTAACGAT CTTCGTGTTC 480 ATGATAATGA GTGTCTTAAC GCGGCTCATA ATGAGTCCAT GTCTGTATTG GCT 83718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ATGATAATGA GTGTCTTAAC GCGGCTCATA ATGAGTCCAT GTCTGTATTG GCT 533 hqPGS_C09HBa0278J12.1+_SGN-E253410+ (83186 83718) ******************************************************************************** EST sequence 68 +strand 489 n (File: SGN-E324017+) 1 AAGCCGTCGC TTATGCTTCA TCTTCTTGCT CTGATTCTGT ACATTTTTCT CACCGGAAAA 61 CTCATCAGAA ATGGATCCAA AGAATCAATT TTCCGATAAC TCAGAAGCCC AAACACCTCA 121 AGAAGAACAA CAGCAGACAC CCATTTTACC GATAGCTTCA ATTTCACTTG CTTTATCCAC 181 AATCCTTCCA ACCCATTTCC TTAATCCTCC TAAAATCTCA ACCCTTTTCA ACAAACCAAA 241 CAAAGTCAAA ATCCCAACTC AAGTTTCATC TCTTACAAAT CTCTCACTTT CAGCTTCTTC 301 TCTTCCACCT ACAAATTCCA AATTCAAGTC CACTATTTCT GCTAACCCTC TTCAGAATAC 361 TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 421 GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 481 TCATAATGA Predicted gene structure (within gDNA segment 82359 to 84309): Exon 1 83212 83699 ( 488 n); cDNA 1 489 ( 489 n); score: 0.993 MATCH C09HBa0278J12.1+ SGN-E324017+ 0.993 488 0.998 C PGS_C09HBa0278J12.1+_SGN-E324017+ (83212 83699) Alignment (genomic DNA sequence = upper lines): AAGCCGTCGC TTAT-CTTCA TCTTCTTCCT CTGATTCTGT ACATTTTTCT CACCGGAAAA 83270 |||||||||| |||| ||||| ||||||| || |||||||||| |||||||||| |||||||||| AAGCCGTCGC TTATGCTTCA TCTTCTTGCT CTGATTCTGT ACATTTTTCT CACCGGAAAA 60 CTCATCAGAA ATGGATCCAA AGAATCAATT TTCCGATAAC TCAGAAGCCC AAACACCTCA 83330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCAGAA ATGGATCCAA AGAATCAATT TTCCGATAAC TCAGAAGCCC AAACACCTCA 120 AGAAGAACAA CAGCAGACAC CCATTTTACC GATAGCTTCA ATTTCACTTG CTTTATCCAC 83390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAACAA CAGCAGACAC CCATTTTACC GATAGCTTCA ATTTCACTTG CTTTATCCAC 180 AATCCTTCCA ACCCATTTCC TTAATCCTCC TAAAATCTCA ACCCTTTTCA ACAAACCAAA 83450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTTCCA ACCCATTTCC TTAATCCTCC TAAAATCTCA ACCCTTTTCA ACAAACCAAA 240 CAAAGTCAAA ATCCCAACTC AAGTTTCATC TCTTACAAAT CTCTCACTTT CAGCTTCTTC 83510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGTCAAA ATCCCAACTC AAGTTTCATC TCTTACAAAT CTCTCACTTT CAGCTTCTTC 300 TCTTCCACCT ACAAATTCCA AATTCAAGTC CACTATTTCT GCTAACCCTC TTCAGAATAC 83570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCCACCT ACAAATTCCA AATTCAAGTC CACTATTTCT GCTAACCCTC TTCAGAATAC 360 TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 83630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 420 GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 83690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 480 TCATAATGA 83699 ||||||||| TCATAATGA 489 hqPGS_C09HBa0278J12.1+_SGN-E324017+ (83212 83699) ******************************************************************************** EST sequence 52 +strand 604 n (File: SGN-E272873+) 1 CCGTCGCTTA TCTTCATCTT CTTCCTCTGA TTCTGTACAT TACTCTCACC GGGGAACTCA 61 TCAGAAATGG ATCCAAAGAA TCAATTTTCC GATAACTCAG AAGCCCAAAC ACCTCAAGAA 121 GAACAACAGC TGACACCCAT TTTACCGATA GCTTCAATTT CACTTGCTTT ATCCACAATC 181 CTTCCAACCC ATTTCCTTAA TCCTCCTAAA ATCTCAACCC TTTTCAACAA ACCAAACAAA 241 GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT CACTTTCAGC TTCTTCTCTT 301 CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA ACCCTCTTCA GAATACTCTA 361 ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG CTGGGCTTCG ACGAGCGTCG 421 ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG AGTGTCTTAA CGCGGCTCAT 481 AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC CGAGAGATTA TGGAAAATCC 541 TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT TTTTGATTGA TTCTGTTGCT 601 GACC Predicted gene structure (within gDNA segment 82615 to 84428): Exon 1 83215 83818 ( 604 n); cDNA 1 604 ( 604 n); score: 0.992 MATCH C09HBa0278J12.1+ SGN-E272873+ 0.992 604 1.000 C PGS_C09HBa0278J12.1+_SGN-E272873+ (83215 83818) Alignment (genomic DNA sequence = upper lines): CCGTCGCTTA TCTTCATCTT CTTCCTCTGA TTCTGTACAT TTTTCTCACC GGAAAACTCA 83274 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| || |||||| CCGTCGCTTA TCTTCATCTT CTTCCTCTGA TTCTGTACAT TACTCTCACC GGGGAACTCA 60 TCAGAAATGG ATCCAAAGAA TCAATTTTCC GATAACTCAG AAGCCCAAAC ACCTCAAGAA 83334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAAATGG ATCCAAAGAA TCAATTTTCC GATAACTCAG AAGCCCAAAC ACCTCAAGAA 120 GAACAACAGC AGACACCCAT TTTACCGATA GCTTCAATTT CACTTGCTTT ATCCACAATC 83394 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAACAGC TGACACCCAT TTTACCGATA GCTTCAATTT CACTTGCTTT ATCCACAATC 180 CTTCCAACCC ATTTCCTTAA TCCTCCTAAA ATCTCAACCC TTTTCAACAA ACCAAACAAA 83454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCAACCC ATTTCCTTAA TCCTCCTAAA ATCTCAACCC TTTTCAACAA ACCAAACAAA 240 GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT CACTTTCAGC TTCTTCTCTT 83514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT CACTTTCAGC TTCTTCTCTT 300 CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA ACCCTCTTCA GAATACTCTA 83574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA ACCCTCTTCA GAATACTCTA 360 ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG CTGGGCTTCG ACGAGCGTCG 83634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG CTGGGCTTCG ACGAGCGTCG 420 ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG AGTGTCTTAA CGCGGCTCAT 83694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG AGTGTCTTAA CGCGGCTCAT 480 AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC CGAGAGATTA TGGAAAATCC 83754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC CGAGAGATTA TGGAAAATCC 540 TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT TTTTGATTGA TTCTGTTGCT 83814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT TTTTGATTGA TTCTGTTGCT 600 GACC 83818 |||| GACC 604 hqPGS_C09HBa0278J12.1+_SGN-E272873+ (83215 83818) ******************************************************************************** EST sequence 33 +strand 567 n (File: SGN-E338462+) 1 GAGGGTCGCT TATCTTCATC TTCTTCCTCT GATTCTGTCC ATTTTTCTCA CCGGAAAACT 61 CATCAGAAAT GGATCCAAAG AATCAATTTT CCGATAACTC AGAAGCCCAA ACACCTCAAG 121 AAGAACAACA GCAGACACCC CATTTTACCG ATAGCTTCAA TTTCACTTGC TTTATCCACA 181 ATCCTTCCAA CCCATTTCCT TAATCCTCCT AAAATCTCAA CCCTTTTCAA CAAACCAAAC 241 AAAGTCAAAA TCCCAACTCA AGTTTCATCT CTTACAAATC TCTCACTTTC AGCTTCTTCT 301 CTTCCACCTA CCAAATTCCA AATTCAAGTC CACTATTTCT GCTAACCCTC TTCAGAATAC 361 TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 421 GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 481 TCATAATGAG TCCATGTCTG TATTGGCTGT TTACTGTTTT GACCCGAGAG ATTATGGAAA 541 ATCCTCATCT GGGTTTGATA AAACTGG Predicted gene structure (within gDNA segment 82577 to 84387): Exon 1 83217 83777 ( 561 n); cDNA 5 567 ( 563 n); score: 0.989 MATCH C09HBa0278J12.1+ SGN-E338462+ 0.989 561 0.989 C PGS_C09HBa0278J12.1+_SGN-E338462+ (83217 83777) Alignment (genomic DNA sequence = upper lines): GTCGCTTATC TTCATCTTCT TCCTCTGATT CTGTACATTT TTCTCACCGG AAAACTCATC 83276 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GTCGCTTATC TTCATCTTCT TCCTCTGATT CTGTCCATTT TTCTCACCGG AAAACTCATC 64 AGAAATGGAT CCAAAGAATC AATTTTCCGA TAACTCAGAA GCCCAAACAC CTCAAGAAGA 83336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGGAT CCAAAGAATC AATTTTCCGA TAACTCAGAA GCCCAAACAC CTCAAGAAGA 124 ACAACAGCAG ACA-CCCATT TTACCGATAG CTTCAATTTC ACTTGCTTTA TCCACAATCC 83395 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAGCAG ACACCCCATT TTACCGATAG CTTCAATTTC ACTTGCTTTA TCCACAATCC 184 TTCCAACCCA TTTCCTTAAT CCTCCTAAAA TCTCAACCCT TTTCAACAAA CCAAACAAAG 83455 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAACCCA TTTCCTTAAT CCTCCTAAAA TCTCAACCCT TTTCAACAAA CCAAACAAAG 244 TCAAAATCCC AACTCAAGTT TCATCTCTTA CAAATCTCTC ACTTTCAGCT TCTTCTCTTC 83515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATCCC AACTCAAGTT TCATCTCTTA CAAATCTCTC ACTTTCAGCT TCTTCTCTTC 304 CACCTA-CAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA ACCCTCTTCA GAATACTCTA 83574 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCTACCAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA ACCCTCTTCA GAATACTCTA 364 ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG CTGGGCTTCG ACGAGCGTCG 83634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG CTGGGCTTCG ACGAGCGTCG 424 ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG AGTGTCTTAA CGCGGCTCAT 83694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG AGTGTCTTAA CGCGGCTCAT 484 AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC CGAGAGATTA TGGAAAATCC 83754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC CGAGAGATTA TGGAAAATCC 544 TCATCTGGGT TTGATAAAAC TGG 83777 |||||||||| |||||||||| ||| TCATCTGGGT TTGATAAAAC TGG 567 hqPGS_C09HBa0278J12.1+_SGN-E338462+ (83217 83777) ******************************************************************************** EST sequence 67 +strand 559 n (File: SGN-E312351+) 1 GTCGCTTATC TTCATCTTCT TCCTCTGATT CTGTACATTT TTCTCACCGG AAAACTCATC 61 AGAAATGGAT CCAAAGAATC AATTTTCCGA TAACTCAGAA GCCCAAACAC CTCAAGAAGA 121 ACAACAGCAG ACACCCATTT TACCGATAGC TTCAATTTCA CTTGCTTTAT CCACAATCCT 181 TCCAACCCAT TTCCTTAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 241 CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 301 ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 361 TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAT 421 TGTTTGGTTC CGTAACGATC TTCGTGTTCA TGATAATGAG TGTCTTAACG CGGCTCATAA 481 TGAGTCCATG TCTGTATTGG CTGTTTACTG TTTTGACCCG AGAGATTATG GAAAATCCTC 541 ATCTGGGTTT GATAAAACT Predicted gene structure (within gDNA segment 82617 to 84385): Exon 1 83217 83775 ( 559 n); cDNA 1 559 ( 559 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E312351+ 1.000 559 1.000 C PGS_C09HBa0278J12.1+_SGN-E312351+ (83217 83775) Alignment (genomic DNA sequence = upper lines): GTCGCTTATC TTCATCTTCT TCCTCTGATT CTGTACATTT TTCTCACCGG AAAACTCATC 83276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGCTTATC TTCATCTTCT TCCTCTGATT CTGTACATTT TTCTCACCGG AAAACTCATC 60 AGAAATGGAT CCAAAGAATC AATTTTCCGA TAACTCAGAA GCCCAAACAC CTCAAGAAGA 83336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGGAT CCAAAGAATC AATTTTCCGA TAACTCAGAA GCCCAAACAC CTCAAGAAGA 120 ACAACAGCAG ACACCCATTT TACCGATAGC TTCAATTTCA CTTGCTTTAT CCACAATCCT 83396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAGCAG ACACCCATTT TACCGATAGC TTCAATTTCA CTTGCTTTAT CCACAATCCT 180 TCCAACCCAT TTCCTTAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 83456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACCCAT TTCCTTAATC CTCCTAAAAT CTCAACCCTT TTCAACAAAC CAAACAAAGT 240 CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 83516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATCCCA ACTCAAGTTT CATCTCTTAC AAATCTCTCA CTTTCAGCTT CTTCTCTTCC 300 ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 83576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTACAAAT TCCAAATTCA AGTCCACTAT TTCTGCTAAC CCTCTTCAGA ATACTCTAAC 360 TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAT 83636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAACCCT CTTCGTCCTT CTGAGCCTTC TAATGCTGCT GGGCTTCGAC GAGCGTCGAT 420 TGTTTGGTTC CGTAACGATC TTCGTGTTCA TGATAATGAG TGTCTTAACG CGGCTCATAA 83696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGTTC CGTAACGATC TTCGTGTTCA TGATAATGAG TGTCTTAACG CGGCTCATAA 480 TGAGTCCATG TCTGTATTGG CTGTTTACTG TTTTGACCCG AGAGATTATG GAAAATCCTC 83756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTCCATG TCTGTATTGG CTGTTTACTG TTTTGACCCG AGAGATTATG GAAAATCCTC 540 ATCTGGGTTT GATAAAACT 83775 |||||||||| ||||||||| ATCTGGGTTT GATAAAACT 559 hqPGS_C09HBa0278J12.1+_SGN-E312351+ (83217 83775) ******************************************************************************** EST sequence 60 +strand 613 n (File: SGN-E306807+) 1 TTATCTTCAT CTTCTTCCTC TGATTCTGTA CATTTTTCTC ACCGGAAAAC TCATCAGAAA 61 TGGATCCAAA GAATCAATTT TCCGATAACT CAGAAGCCCA AACACCTCAA GAAGAACAAC 121 AGCAGACACC CATTTTACCG ATAGCTTCAA TTTCACTTGC TTTATCCACA ATCCTTCCAA 181 CCCATTTCCT TAATCCTCCT AAAATCTCAA CCCTTTTCAA CAAACCAAAC AAAGTCAAAA 241 TCCCAACTCA AGTTTCATCT CTTACAAATC TCTCACTTTC AGCTTCTTCT CTTCCACCTA 301 CAAATTCCAA ATTCAAGTCC ACTATTTCTG CTAACCCTCT TCAGAATACT CTAACTCTTA 361 ACCCTCTTCG TCCTTCTGAG CCTTCTAATG CTGCTGGGCT TCGACGAGCG TCGATTGTTT 421 GGTTCCGTAA CGATCTTCGT GTTCATGATA ATGAGTGTCT TAACGCGGCT CATAATGAGT 481 CCATGTCTGT ATTGGCTGTT TACTGTTTTG ACCCGAGAGA TTATGGAAAA TCCTCATCTG 541 GGTTTGATAA AACTGGGCCG TATAGGGCTA GTTTTTTGAT TGATTCTGTT GCTGACCTTA 601 GGAAGAATCT ACA Predicted gene structure (within gDNA segment 82622 to 84444): Exon 1 83222 83834 ( 613 n); cDNA 1 613 ( 613 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E306807+ 1.000 613 1.000 C PGS_C09HBa0278J12.1+_SGN-E306807+ (83222 83834) Alignment (genomic DNA sequence = upper lines): TTATCTTCAT CTTCTTCCTC TGATTCTGTA CATTTTTCTC ACCGGAAAAC TCATCAGAAA 83281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTTCAT CTTCTTCCTC TGATTCTGTA CATTTTTCTC ACCGGAAAAC TCATCAGAAA 60 TGGATCCAAA GAATCAATTT TCCGATAACT CAGAAGCCCA AACACCTCAA GAAGAACAAC 83341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCCAAA GAATCAATTT TCCGATAACT CAGAAGCCCA AACACCTCAA GAAGAACAAC 120 AGCAGACACC CATTTTACCG ATAGCTTCAA TTTCACTTGC TTTATCCACA ATCCTTCCAA 83401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGACACC CATTTTACCG ATAGCTTCAA TTTCACTTGC TTTATCCACA ATCCTTCCAA 180 CCCATTTCCT TAATCCTCCT AAAATCTCAA CCCTTTTCAA CAAACCAAAC AAAGTCAAAA 83461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATTTCCT TAATCCTCCT AAAATCTCAA CCCTTTTCAA CAAACCAAAC AAAGTCAAAA 240 TCCCAACTCA AGTTTCATCT CTTACAAATC TCTCACTTTC AGCTTCTTCT CTTCCACCTA 83521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTCA AGTTTCATCT CTTACAAATC TCTCACTTTC AGCTTCTTCT CTTCCACCTA 300 CAAATTCCAA ATTCAAGTCC ACTATTTCTG CTAACCCTCT TCAGAATACT CTAACTCTTA 83581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTCCAA ATTCAAGTCC ACTATTTCTG CTAACCCTCT TCAGAATACT CTAACTCTTA 360 ACCCTCTTCG TCCTTCTGAG CCTTCTAATG CTGCTGGGCT TCGACGAGCG TCGATTGTTT 83641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTCTTCG TCCTTCTGAG CCTTCTAATG CTGCTGGGCT TCGACGAGCG TCGATTGTTT 420 GGTTCCGTAA CGATCTTCGT GTTCATGATA ATGAGTGTCT TAACGCGGCT CATAATGAGT 83701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCCGTAA CGATCTTCGT GTTCATGATA ATGAGTGTCT TAACGCGGCT CATAATGAGT 480 CCATGTCTGT ATTGGCTGTT TACTGTTTTG ACCCGAGAGA TTATGGAAAA TCCTCATCTG 83761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGTCTGT ATTGGCTGTT TACTGTTTTG ACCCGAGAGA TTATGGAAAA TCCTCATCTG 540 GGTTTGATAA AACTGGGCCG TATAGGGCTA GTTTTTTGAT TGATTCTGTT GCTGACCTTA 83821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTGATAA AACTGGGCCG TATAGGGCTA GTTTTTTGAT TGATTCTGTT GCTGACCTTA 600 GGAAGAATCT ACA 83834 |||||||||| ||| GGAAGAATCT ACA 613 hqPGS_C09HBa0278J12.1+_SGN-E306807+ (83222 83834) ******************************************************************************** EST sequence 160 -strand 623 n (File: SGN-E284494-) 1 GGTGATGTGG AACCTGGGGA GATTCCTTCG TTGGTTGATT TGGGGCTCAA TCCTAGTGCC 61 ACCATGGGTC AGAATGGAAA ATCAGCTGCT AATGCTTCCC TTGTGGGAGG AGAGAATGAA 121 GCACTGCAAA GACTTAGAAA ATTTGCAGCA GAATGTCAGG CCCAACCCAG TAAGGAAAAC 181 AAGGATGGCA CAAATGACAG CATATATGGT GCAAACTTTT CTTGCAAAAT ATCGCCTTGG 241 TTAGCTATGG GATGTCTCTC ACCCCGTTCC ATGTTTGATG AATTGAAGAA GTCCACTTCA 301 AGAACGATTT CTGCTGCCTC TGCCAAGAAA GATGGTGGTA GTGGCACTGG GCTGAACTGG 361 CTGATGTACG AGCTGTTATG GAGGGATTTT TTCAGATTCA TCACCAAGAA ATATAGTGCT 421 GCAAAACAAA ATAGTGCTGC TCCAGTAACT ACTTGCGTAG GAGCTGCTGC TTAACGATGG 481 TATACTCGAA AGGAGAATGA AGGTTTCCTT TTTGTAGCTT GATTTATTTT TTCCGGAAGT 541 TTAGCTGTGG AATGTTAGAG TTGGACTGCC ATTGAATTGA AGCATTTTTT CTTTTGACAA 601 TAAGTGTTGA GACATAAAAA AAA Predicted gene structure (within gDNA segment 83556 to 86957): Exon 1 84166 84237 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000 Intron 1 84238 85536 (1299 n); Pd: 0.941 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 85537 85766 ( 230 n); cDNA 73 302 ( 230 n); score: 1.000 Intron 2 85767 85858 ( 92 n); Pd: 0.881 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 85859 85951 ( 93 n); cDNA 303 395 ( 93 n); score: 1.000 Intron 3 85952 86093 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 4 86094 86320 ( 227 n); cDNA 396 622 ( 227 n); score: 0.991 MATCH C09HBa0278J12.1+ SGN-E284494- 0.997 622 0.998 C PGS_C09HBa0278J12.1+_SGN-E284494- (84166 84237,85537 85766,85859 85951,86094 86320) Alignment (genomic DNA sequence = upper lines): GGTGATGTGG AACCTGGGGA GATTCCTTCG TTGGTTGATT TGGGGCTCAA TCCTAGTGCC 84225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATGTGG AACCTGGGGA GATTCCTTCG TTGGTTGATT TGGGGCTCAA TCCTAGTGCC 60 ACCATGGGTC AGGTATTACT TTGTTCGATC TCAAATATCG TAGAGGATTT AGGTTTATTC 84285 |||||||||| || ACCATGGGTC AG........ .......... .......... .......... .......... 72 AGTATTGGAT GAAAGTAGTT TTACCTTTGA TGTCAAAGAA CTTGTAATTT AACTGAAATG 84345 .......... .......... .......... .......... .......... .......... 72 ACATATTTGC GAGTGTTGGA ATGAAACTGG TGTAAATGTA GTGTAACCGA TAATAAGGAT 84405 .......... .......... .......... .......... .......... .......... 72 GATTCATATA GTTGAACCCA ACAAGTTTGA GATTGAGCTA CACTAGTAGT CCTTTAGTTT 84465 .......... .......... .......... .......... .......... .......... 72 CACGTAGTTT TCCGTTTCTT AGACACTTCA TTGGAAGTGG TAGAGATGAT CAAGATTCCA 84525 .......... .......... .......... .......... .......... .......... 72 TTTTTATACG AATGGAAGTG ATTCAAGTCA GAAATAACTG ATGGTTTAAT TCAACATATC 84585 .......... .......... .......... .......... .......... .......... 72 TCTTGTATAT GTATTCTGAA CATTTGTTAG ATAAAACCAC ATGTTTTAAG TAGGTTTAGT 84645 .......... .......... .......... .......... .......... .......... 72 ATTTGGCGTT TGAACATCAG TAATTTAAAT GATCCTTGCT CTATCGTGTA GTGTCCTTCT 84705 .......... .......... .......... .......... .......... .......... 72 ATAGTTGTGT GCAGTGTTCA GGAAAGCAAG GCGAAGCAAT GCGAGCCTTC TACGCTTCAC 84765 .......... .......... .......... .......... .......... .......... 72 AAACTAGAAT GAGTATGTGA GTGCTTCATC GCCTAAAGCG TGAAGCAGGG CCTTATCACT 84825 .......... .......... .......... .......... .......... .......... 72 TTTTTCCACT TCCTACTTCC CTGAACACTG GTTGTGTACA CTGAGTATCC AGCTCATAGC 84885 .......... .......... .......... .......... .......... .......... 72 TGTGACATTT TGTTGATCAA TATGTTAATG TACTTCTTAT CAGGCCGTCA CCAACTAGGA 84945 .......... .......... .......... .......... .......... .......... 72 CACTACACAC CAACTATAGT GCTCATAGAA TAGACCAAAG AACTCTTATT TGTTAGCCTG 85005 .......... .......... .......... .......... .......... .......... 72 AGAATATGTA ATGTAGAAAG AACATCTTTT AGCCACGTTT GGAGGTTACT TTTTTAGTAT 85065 .......... .......... .......... .......... .......... .......... 72 TGCCTGTAGC ACAGGCCACA GTGCACAATC ACTTAAGAAC TGTTGCTTGA ATTTTGTAAT 85125 .......... .......... .......... .......... .......... .......... 72 TGCCTTACTG TATTGTAACT TTGGAACTGT AAGTTGTTTC ACATCACAAA CTAGTCAAAC 85185 .......... .......... .......... .......... .......... .......... 72 AAAGTTTATT TGTTTCAGTT ACTTTGCAAA CTATGGCAAA CATGAACATT TCTTTATCTT 85245 .......... .......... .......... .......... .......... .......... 72 TGCATAATCA TTTGCATTTG CACATCATTT AGAATGACTA ATGCTTCCCT TGTGGGAGGA 85305 .......... .......... .......... .......... .......... .......... 72 GAGAATGAAG CACTGCAGAG ACTTCAATTT TGTAGTTGCC ATACTGTATT TTTCACCGAC 85365 .......... .......... .......... .......... .......... .......... 72 TTGAATTTTG TAATTGCTGT ACTGTATTTA AACTTTCGGA GTTGTCAGTT GTTTAACATC 85425 .......... .......... .......... .......... .......... .......... 72 ACAAACTAGT CAAAAAAAGT TGATTCATTT CAGTTATTTC GCTAACTATT GTAAACATGA 85485 .......... .......... .......... .......... .......... .......... 72 ACATTTCTTT ATCTTGGTAT ACTTAATCAT TTGCATTTGC CAACCATTTA GAATGGAAAA 85545 ||||||||| .......... .......... .......... .......... .......... .AATGGAAAA 81 TCAGCTGCTA ATGCTTCCCT TGTGGGAGGA GAGAATGAAG CACTGCAAAG ACTTAGAAAA 85605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTGCTA ATGCTTCCCT TGTGGGAGGA GAGAATGAAG CACTGCAAAG ACTTAGAAAA 141 TTTGCAGCAG AATGTCAGGC CCAACCCAGT AAGGAAAACA AGGATGGCAC AAATGACAGC 85665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAGCAG AATGTCAGGC CCAACCCAGT AAGGAAAACA AGGATGGCAC AAATGACAGC 201 ATATATGGTG CAAACTTTTC TTGCAAAATA TCGCCTTGGT TAGCTATGGG ATGTCTCTCA 85725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATGGTG CAAACTTTTC TTGCAAAATA TCGCCTTGGT TAGCTATGGG ATGTCTCTCA 261 CCCCGTTCCA TGTTTGATGA ATTGAAGAAG TCCACTTCAA GGTTAATGTC TTGTCAATAG 85785 |||||||||| |||||||||| |||||||||| |||||||||| | CCCCGTTCCA TGTTTGATGA ATTGAAGAAG TCCACTTCAA G......... .......... 302 TTTTCTTATC CTGATACTAA TGCCTGTGAG ACCAATATCA CTGGCTAACG CTACATTGGT 85845 .......... .......... .......... .......... .......... .......... 302 TGTTGTGCTG CAGAACGATT TCTGCTGCCT CTGCCAAGAA AGATGGTGGT AGTGGCACTG 85905 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...AACGATT TCTGCTGCCT CTGCCAAGAA AGATGGTGGT AGTGGCACTG 349 GGCTGAACTG GCTGATGTAC GAGCTGTTAT GGAGGGATTT TTTCAGGTAA TTTAGCATGC 85965 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGCTGAACTG GCTGATGTAC GAGCTGTTAT GGAGGGATTT TTTCAG.... .......... 395 AACTTAGCTC CTATGATTGA GATGCTTGTT TCAGTTTCGT ATAGTGTGAT ACTCGTTCCA 86025 .......... .......... .......... .......... .......... .......... 395 TCCTTTATGA AACAATTCCC GTCCTTTAAA ATTATTCCTT GGATAACATT CTGTTTTCTG 86085 .......... .......... .......... .......... .......... .......... 395 AATGCCAGAT TCATCACCAA GAAATATAGT GCTGCAAAAC AAAATAGTGC TGCTCCAGTA 86145 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AT TCATCACCAA GAAATATAGT GCTGCAAAAC AAAATAGTGC TGCTCCAGTA 447 ACTACTTGCG TAGGAGCTGC TGCTTAACGA TGGTATACTC AAAAGGAGAA TGAAGGTTTC 86205 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACTACTTGCG TAGGAGCTGC TGCTTAACGA TGGTATACTC GAAAGGAGAA TGAAGGTTTC 507 CTTTTTGTAG CTTGATTTAT TTTTTCCGGA AGTTTAGCTG TGGAATGTTA GAGTTGGACT 86265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTGTAG CTTGATTTAT TTTTTCCGGA AGTTTAGCTG TGGAATGTTA GAGTTGGACT 567 GCCATTGAAT TGAAGCATTT TTTCTTTTGA CAATAAGTGT TGAGACATAA AAGAA 86320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || || GCCATTGAAT TGAAGCATTT TTTCTTTTGA CAATAAGTGT TGAGACATAA AAAAA 622 hqPGS_C09HBa0278J12.1+_SGN-E284494- (84166 84237,85537 85766,85859 85951,86094 86320) ******************************************************************************** EST sequence 71 +strand 551 n (File: SGN-E254133+) 1 TTTTCAACAA ACCAAACAAA GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT 61 CACTTTCAGC TTCTTCTCTT CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA 121 ACCCTCTTCA GAATACTCTA ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG 181 CTGGGCTTCG ACGAGCGTCG ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG 241 AGTGTCTTAA CGCGGCTCAT AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC 301 CGAGAGATTA TGGAAAATCC TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT 361 TTTTGATTGA TTCTGTTGCT GACCTTAGGA AGAATCTACA GGCAAGAGGG TCTGATCTTG 421 TTGTTAGAAT TGGGAAGCCG GAGACTGTGT TGGTGGAATT AGCTAAAGCT GTTGGAGCTG 481 AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA GATAAGATTG 541 ATGCTGTAAT G Predicted gene structure (within gDNA segment 82835 to 84595): Exon 1 83435 83985 ( 551 n); cDNA 1 551 ( 551 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E254133+ 1.000 551 1.000 C PGS_C09HBa0278J12.1+_SGN-E254133+ (83435 83985) Alignment (genomic DNA sequence = upper lines): TTTTCAACAA ACCAAACAAA GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT 83494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAACAA ACCAAACAAA GTCAAAATCC CAACTCAAGT TTCATCTCTT ACAAATCTCT 60 CACTTTCAGC TTCTTCTCTT CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA 83554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTCAGC TTCTTCTCTT CCACCTACAA ATTCCAAATT CAAGTCCACT ATTTCTGCTA 120 ACCCTCTTCA GAATACTCTA ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG 83614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTCTTCA GAATACTCTA ACTCTTAACC CTCTTCGTCC TTCTGAGCCT TCTAATGCTG 180 CTGGGCTTCG ACGAGCGTCG ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG 83674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGCTTCG ACGAGCGTCG ATTGTTTGGT TCCGTAACGA TCTTCGTGTT CATGATAATG 240 AGTGTCTTAA CGCGGCTCAT AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC 83734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTCTTAA CGCGGCTCAT AATGAGTCCA TGTCTGTATT GGCTGTTTAC TGTTTTGACC 300 CGAGAGATTA TGGAAAATCC TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT 83794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAGATTA TGGAAAATCC TCATCTGGGT TTGATAAAAC TGGGCCGTAT AGGGCTAGTT 360 TTTTGATTGA TTCTGTTGCT GACCTTAGGA AGAATCTACA GGCAAGAGGG TCTGATCTTG 83854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGATTGA TTCTGTTGCT GACCTTAGGA AGAATCTACA GGCAAGAGGG TCTGATCTTG 420 TTGTTAGAAT TGGGAAGCCG GAGACTGTGT TGGTGGAATT AGCTAAAGCT GTTGGAGCTG 83914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAGAAT TGGGAAGCCG GAGACTGTGT TGGTGGAATT AGCTAAAGCT GTTGGAGCTG 480 AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA GATAAGATTG 83974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA GATAAGATTG 540 ATGCTGTAAT G 83985 |||||||||| | ATGCTGTAAT G 551 hqPGS_C09HBa0278J12.1+_SGN-E254133+ (83435 83985) ******************************************************************************** EST sequence 61 +strand 475 n (File: SGN-E214506+) 1 TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 61 GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 121 TCATAATGAG TCCATGTCTG TATTGGCTGT TTACTGTTTT GACCCGAGAG ATTATGGAAA 181 ATCCTCATCT GGGTTTGATA AAACTGGGCC GTATAGGGCT AGTTTTTTGA TTGATTCTGT 241 TGCTGACCTT AGGAAGAATC TACAGGCAAG AGGGTCTGAT CTTGTTGTTA GAATTGGGAA 301 GCCGGAGACT GTGTTGGTGG AATTAGCTAA AGCTGTTGGA GCTGAAGCTG TGTATGCTCA 361 TAGGGAGGTT TCACATGATG AGGTTAAAGG GGAAGATAAN ATTGATGCTG TAATGAAGGA 421 TGAGGGTTTG GAGGTGAAGT ATTTCTGGGG TAGTACATTG TATCATGGTG ATGAT Predicted gene structure (within gDNA segment 82971 to 84727): Exon 1 83571 84045 ( 475 n); cDNA 1 475 ( 475 n); score: 0.996 MATCH C09HBa0278J12.1+ SGN-E214506+ 0.996 475 1.000 C PGS_C09HBa0278J12.1+_SGN-E214506+ (83571 84045) Alignment (genomic DNA sequence = upper lines): TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 83630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAACTCTT AACCCTCTTC GTCCTTCTGA GCCTTCTAAT GCTGCTGGGC TTCGACGAGC 60 GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 83690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATTGTT TGGTTCCGTA ACGATCTTCG TGTTCATGAT AATGAGTGTC TTAACGCGGC 120 TCATAATGAG TCCATGTCTG TATTGGCTGT TTACTGTTTT GACCCGAGAG ATTATGGAAA 83750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAATGAG TCCATGTCTG TATTGGCTGT TTACTGTTTT GACCCGAGAG ATTATGGAAA 180 ATCCTCATCT GGGTTTGATA AAACTGGGCC GTATAGGGCT AGTTTTTTGA TTGATTCTGT 83810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTCATCT GGGTTTGATA AAACTGGGCC GTATAGGGCT AGTTTTTTGA TTGATTCTGT 240 TGCTGACCTT AGGAAGAATC TACAGGCAAG AGGGTCTGAT CTTGTTGTTA GAATTGGGAA 83870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGACCTT AGGAAGAATC TACAGGCAAG AGGGTCTGAT CTTGTTGTTA GAATTGGGAA 300 GCCGGAGACT GTGTTGGTGG AATTAGCTAA AGCTGTTGGA GCTGAAGCTG TGTATGCTCA 83930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAGACT GTGTTGGTGG AATTAGCTAA AGCTGTTGGA GCTGAAGCTG TGTATGCTCA 360 TAGGGAGGTT TCACATGATG AGGTTAAAGG GGAAGATAAG ATTGATGCTG TAATGAAGGA 83990 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGGGAGGTT TCACATGATG AGGTTAAAGG GGAAGATAAN ATTGATGCTG TAATGAAGGA 420 TGAGGGTTTG GAGGTGAAGT ATTTCTGGGG TAGTACATTG TATCATGTTG ATGAT 84045 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| TGAGGGTTTG GAGGTGAAGT ATTTCTGGGG TAGTACATTG TATCATGGTG ATGAT 475 hqPGS_C09HBa0278J12.1+_SGN-E214506+ (83571 84045) ******************************************************************************** EST sequence 117 +strand 198 n (File: SGN-E289947+) 1 GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA 61 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 121 ACATTGTATC ATGTTGATGA TTTGCCTTTT AAGTTGGAGC AAATGCCTAC GAATTACGGA 181 AGCTTTAGGG AGAAAGTG Predicted gene structure (within gDNA segment 83305 to 84712): Exon 1 83905 84102 ( 198 n); cDNA 1 198 ( 198 n); score: 0.995 MATCH C09HBa0278J12.1+ SGN-E289947+ 0.995 198 1.000 C PGS_C09HBa0278J12.1+_SGN-E289947+ (83905 84102) Alignment (genomic DNA sequence = upper lines): GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA 83964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGAGCTG AAGCTGTGTA TGCTCATAGG GAGGTTTCAC ATGATGAGGT TAAAGGGGAA 60 GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 84024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGATTG ATGCTGTAAT GAAGGATGAG GGTTTGGAGG TGAAGTATTT CTGGGGTAGT 120 ACATTGTATC ATGTTGATGA TTTGCCTTTT AAGTTGGAGC AAATGCCTAC GAATTACGGA 84084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTGTATC ATGTTGATGA TTTGCCTTTT AAGTTGGAGC AAATGCCTAC GAATTACGGA 180 GGCTTTAGGG AGAAAGTG 84102 ||||||||| |||||||| AGCTTTAGGG AGAAAGTG 198 hqPGS_C09HBa0278J12.1+_SGN-E289947+ (83905 84102) ******************************************************************************** EST sequence 51 +strand 550 n (File: SGN-E279534+) 1 GAAAATCAGC TGCTAATGCT TCCCTTGTGG GAGGAGAGAA TGAAGCACTG CAAAGACTTA 61 GAAAATTTGC AGCAGAATGT CAGGCCCAAC CCAGTAAGGA AAACAAGGAT GGCACAAATG 121 ACAGCATATA TGGTGCAAAC TTTTCTTGCA AAATATCGCC TTGGTTAGCT ATGGGATGTC 181 TCTCACCCCG TTCCATGTTT GATGAATTGA AGAAGTCCAC TTCAAGAACG ATTTCTGCTG 241 CCTCTGCCAA GAAAGATGGT GGTAGTGGCA CTGGGCTGAA CTGGCTGATG TACGAGCTGT 301 TATGGAGGGA TTTTTTCAGA TTCATCACCA AGAAATATAG TGCTGCAAAA CAAAATAGTG 361 CTGCTCCAGT AACTACTTGC GTAGGAGCTG CTGCTTAACG ATGGTATACT CAAAAGGAGA 421 ATGAAGGTTT CCTTTTTGTA GCTTGATTTA TTTTTTCCGG AAGTTTAGCT GTGGAATGTT 481 AGAGTTGGAC TGCCATTGAA TTGAAGCATT TTTTCTTTTG ACAATAAGTG TTGAGACATA 541 AAAGAATTTG Predicted gene structure (within gDNA segment 84941 to 86934): Exon 1 85541 85766 ( 226 n); cDNA 1 226 ( 226 n); score: 1.000 Intron 1 85767 85858 ( 92 n); Pd: 0.881 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 85859 85951 ( 93 n); cDNA 227 319 ( 93 n); score: 1.000 Intron 2 85952 86093 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 86094 86324 ( 231 n); cDNA 320 550 ( 231 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E279534+ 1.000 550 1.000 C PGS_C09HBa0278J12.1+_SGN-E279534+ (85541 85766,85859 85951,86094 86324) Alignment (genomic DNA sequence = upper lines): GAAAATCAGC TGCTAATGCT TCCCTTGTGG GAGGAGAGAA TGAAGCACTG CAAAGACTTA 85600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATCAGC TGCTAATGCT TCCCTTGTGG GAGGAGAGAA TGAAGCACTG CAAAGACTTA 60 GAAAATTTGC AGCAGAATGT CAGGCCCAAC CCAGTAAGGA AAACAAGGAT GGCACAAATG 85660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATTTGC AGCAGAATGT CAGGCCCAAC CCAGTAAGGA AAACAAGGAT GGCACAAATG 120 ACAGCATATA TGGTGCAAAC TTTTCTTGCA AAATATCGCC TTGGTTAGCT ATGGGATGTC 85720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCATATA TGGTGCAAAC TTTTCTTGCA AAATATCGCC TTGGTTAGCT ATGGGATGTC 180 TCTCACCCCG TTCCATGTTT GATGAATTGA AGAAGTCCAC TTCAAGGTTA ATGTCTTGTC 85780 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCTCACCCCG TTCCATGTTT GATGAATTGA AGAAGTCCAC TTCAAG.... .......... 226 AATAGTTTTC TTATCCTGAT ACTAATGCCT GTGAGACCAA TATCACTGGC TAACGCTACA 85840 .......... .......... .......... .......... .......... .......... 226 TTGGTTGTTG TGCTGCAGAA CGATTTCTGC TGCCTCTGCC AAGAAAGATG GTGGTAGTGG 85900 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AA CGATTTCTGC TGCCTCTGCC AAGAAAGATG GTGGTAGTGG 268 CACTGGGCTG AACTGGCTGA TGTACGAGCT GTTATGGAGG GATTTTTTCA GGTAATTTAG 85960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CACTGGGCTG AACTGGCTGA TGTACGAGCT GTTATGGAGG GATTTTTTCA G......... 319 CATGCAACTT AGCTCCTATG ATTGAGATGC TTGTTTCAGT TTCGTATAGT GTGATACTCG 86020 .......... .......... .......... .......... .......... .......... 319 TTCCATCCTT TATGAAACAA TTCCCGTCCT TTAAAATTAT TCCTTGGATA ACATTCTGTT 86080 .......... .......... .......... .......... .......... .......... 319 TTCTGAATGC CAGATTCATC ACCAAGAAAT ATAGTGCTGC AAAACAAAAT AGTGCTGCTC 86140 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATTCATC ACCAAGAAAT ATAGTGCTGC AAAACAAAAT AGTGCTGCTC 366 CAGTAACTAC TTGCGTAGGA GCTGCTGCTT AACGATGGTA TACTCAAAAG GAGAATGAAG 86200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAACTAC TTGCGTAGGA GCTGCTGCTT AACGATGGTA TACTCAAAAG GAGAATGAAG 426 GTTTCCTTTT TGTAGCTTGA TTTATTTTTT CCGGAAGTTT AGCTGTGGAA TGTTAGAGTT 86260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCTTTT TGTAGCTTGA TTTATTTTTT CCGGAAGTTT AGCTGTGGAA TGTTAGAGTT 486 GGACTGCCAT TGAATTGAAG CATTTTTTCT TTTGACAATA AGTGTTGAGA CATAAAAGAA 86320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTGCCAT TGAATTGAAG CATTTTTTCT TTTGACAATA AGTGTTGAGA CATAAAAGAA 546 TTTG 86324 |||| TTTG 550 hqPGS_C09HBa0278J12.1+_SGN-E279534+ (85541 85766,85859 85951,86094 86324) ******************************************************************************** EST sequence 281 -strand 458 n (File: SGN-E226505-) 1 ACTTCAAGAA CGATTTCTGC TGCCTCTGCC AAAGAAAAAT GGTGGTAGTG GCACTGGGCT 61 GAACTGGCTG ATGTACGAGC TGTTATGGAG GGATTTTTTC AGATTCATCA CCAAGAAATA 121 TAGTGCTGCA AAACAAAATA GTGCTGCTCC AGTAACTACT TGCGTAGGAG CTGCTGCTTA 181 ACGATGGTAT ACTCAAAAGG AGAATGAAGG TTTCCTTTTT GTAGCTTGAT TTATTTTTTC 241 CGGAAGTTTA GCTGTGGAAT GTTAGAGTTG GACTGCCATT GAATTGAAGC ATTTTTTCTT 301 TTGACAATAA GTGTTGAGAC ATAAAAGAAT TTGTCGCCAT TTCTAGCAAG TCGCTCTACA 361 ATCCTTCTTA TGCTAGTATT TATATATTTT TGATTTCATC TGTAGTTGAA ACAGGTGTGA 421 TAACAAACAT ACCTGTAATT GAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 85187 to 87238): Exon 1 85759 85766 ( 8 n); cDNA 1 8 ( 8 n); score: 1.000 Intron 1 85767 85858 ( 92 n); Pd: 0.881 (s: 0), Pa: 0.996 (s: 0.93) Exon 2 85859 85951 ( 93 n); cDNA 9 102 ( 94 n); score: 0.962 Intron 2 85952 86093 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 86094 86434 ( 341 n); cDNA 103 443 ( 341 n); score: 0.997 PPA cDNA 444 458 MATCH C09HBa0278J12.1+ SGN-E226505- 0.990 442 0.965 C PGS_C09HBa0278J12.1+_SGN-E226505- (85759 85766,85859 85951,86094 86434) Alignment (genomic DNA sequence = upper lines): ACTTCAAGGT TAATGTCTTG TCAATAGTTT TCTTATCCTG ATACTAATGC CTGTGAGACC 85818 |||||||| ACTTCAAG.. .......... .......... .......... .......... .......... 8 AATATCACTG GCTAACGCTA CATTGGTTGT TGTGCTGCAG AACGATTTCT GCTGCCTCTG 85878 |||||||||| |||||||||| .......... .......... .......... .......... AACGATTTCT GCTGCCTCTG 28 CC-AAGAAAG ATGGTGGTAG TGGCACTGGG CTGAACTGGC TGATGTACGA GCTGTTATGG 85937 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAGAAAA ATGGTGGTAG TGGCACTGGG CTGAACTGGC TGATGTACGA GCTGTTATGG 88 AGGGATTTTT TCAGGTAATT TAGCATGCAA CTTAGCTCCT ATGATTGAGA TGCTTGTTTC 85997 |||||||||| |||| AGGGATTTTT TCAG...... .......... .......... .......... .......... 102 AGTTTCGTAT AGTGTGATAC TCGTTCCATC CTTTATGAAA CAATTCCCGT CCTTTAAAAT 86057 .......... .......... .......... .......... .......... .......... 102 TATTCCTTGG ATAACATTCT GTTTTCTGAA TGCCAGATTC ATCACCAAGA AATATAGTGC 86117 |||| |||||||||| |||||||||| .......... .......... .......... ......ATTC ATCACCAAGA AATATAGTGC 126 TGCAAAACAA AATAGTGCTG CTCCAGTAAC TACTTGCGTA GGAGCTGCTG CTTAACGATG 86177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAAACAA AATAGTGCTG CTCCAGTAAC TACTTGCGTA GGAGCTGCTG CTTAACGATG 186 GTATACTCAA AAGGAGAATG AAGGTTTCCT TTTTGTAGCT TGATTTATTT TTTCCGGAAG 86237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATACTCAA AAGGAGAATG AAGGTTTCCT TTTTGTAGCT TGATTTATTT TTTCCGGAAG 246 TTTAGCTGTG GAATGTTAGA GTTGGACTGC CATTGAATTG AAGCATTTTT TCTTTTGACA 86297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGCTGTG GAATGTTAGA GTTGGACTGC CATTGAATTG AAGCATTTTT TCTTTTGACA 306 ATAAGTGTTG AGACATAAAA GAATTTGTCG CCATTTCTAG CAAGTCGCTC TACAATCCTT 86357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGTGTTG AGACATAAAA GAATTTGTCG CCATTTCTAG CAAGTCGCTC TACAATCCTT 366 CTTATGCTAG TATTTATATA TTTTTGATTT CATCTGTAGT TGAAACAGGT GTGATAACAA 86417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATGCTAG TATTTATATA TTTTTGATTT CATCTGTAGT TGAAACAGGT GTGATAACAA 426 ACATACCTGT AGTTGAA 86434 |||||||||| | ||||| ACATACCTGT AATTGAA 443 hqPGS_C09HBa0278J12.1+_SGN-E226505- (85759 85766,85859 85951,86094 86434) ******************************************************************************** EST sequence 280 -strand 275 n (File: SGN-E226906-) 1 TGGTATACTC AAAAGGAGAA TGAAGGTTTC CTTTTTGTAG CTTGATTTAT TTTTTCCGAA 61 AGTTTAGCTG TGGAATGTTA GAGTTGGACT GCCATTGAAT TAAAGCATTT TTTCTTTTGA 121 CAATAAGTGT TGAGACATAA AAGAATTTGT CGCCATTTCT AGCAAGTCGC TCTACAATCC 181 TTCTTATGCT AGTATTTATA TATTTTTGAT TTCATCTGTA GTTGAAACAG GTGTGATAAC 241 AAACATACCT GTAGTTGAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 85566 to 87185): Exon 1 86176 86434 ( 259 n); cDNA 1 259 ( 259 n); score: 0.992 PPA cDNA 260 275 MATCH C09HBa0278J12.1+ SGN-E226906- 0.992 259 0.942 C PGS_C09HBa0278J12.1+_SGN-E226906- (86176 86434) Alignment (genomic DNA sequence = upper lines): TGGTATACTC AAAAGGAGAA TGAAGGTTTC CTTTTTGTAG CTTGATTTAT TTTTTCCGGA 86235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGGTATACTC AAAAGGAGAA TGAAGGTTTC CTTTTTGTAG CTTGATTTAT TTTTTCCGAA 60 AGTTTAGCTG TGGAATGTTA GAGTTGGACT GCCATTGAAT TGAAGCATTT TTTCTTTTGA 86295 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGTTTAGCTG TGGAATGTTA GAGTTGGACT GCCATTGAAT TAAAGCATTT TTTCTTTTGA 120 CAATAAGTGT TGAGACATAA AAGAATTTGT CGCCATTTCT AGCAAGTCGC TCTACAATCC 86355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAAGTGT TGAGACATAA AAGAATTTGT CGCCATTTCT AGCAAGTCGC TCTACAATCC 180 TTCTTATGCT AGTATTTATA TATTTTTGAT TTCATCTGTA GTTGAAACAG GTGTGATAAC 86415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTATGCT AGTATTTATA TATTTTTGAT TTCATCTGTA GTTGAAACAG GTGTGATAAC 240 AAACATACCT GTAGTTGAA 86434 |||||||||| ||||||||| AAACATACCT GTAGTTGAA 259 hqPGS_C09HBa0278J12.1+_SGN-E226906- (86176 86434) ******************************************************************************** EST sequence 79 +strand 331 n (File: SGN-E390094+) 1 TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 61 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 121 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 181 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 241 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 301 TATTGATACT CATTTCAATG TAAAAAAAAA A Predicted gene structure (within gDNA segment 85609 to 87212): Exon 1 86209 86532 ( 324 n); cDNA 1 324 ( 324 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E390094+ 1.000 324 0.979 C PGS_C09HBa0278J12.1+_SGN-E390094+ (86209 86532) Alignment (genomic DNA sequence = upper lines): TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 86268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 60 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 86328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 120 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 86388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 180 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 86448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 240 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 86508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 300 TATTGATACT CATTTCAATG TAAA 86532 |||||||||| |||||||||| |||| TATTGATACT CATTTCAATG TAAA 324 hqPGS_C09HBa0278J12.1+_SGN-E390094+ (86209 86532) ******************************************************************************** EST sequence 102 +strand 332 n (File: SGN-E390468+) 1 TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTGATAG TTGGACTGCC 61 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAGAG AATTTGTCGC 121 CATTTCTATC ACGCCCCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 181 ATCTGGAATT GAAACAGGTG TGATACCAAA CATACCTGTA CTTGAAATAT GTGTGCCATG 241 TTTGAGATTA CCATCCATCT TGAACCCGCC GAGAGTATCC TTGAGCATCA CATGATTTAC 301 TAGTGATACT CGTTTCAATG GAAAAAAAAA CA Predicted gene structure (within gDNA segment 85609 to 87528): Exon 1 86209 86532 ( 324 n); cDNA 1 324 ( 324 n); score: 0.948 MATCH C09HBa0278J12.1+ SGN-E390468+ 0.948 324 0.976 C PGS_C09HBa0278J12.1+_SGN-E390468+ (86209 86532) Alignment (genomic DNA sequence = upper lines): TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 86268 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | || |||||||||| TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTGATAG TTGGACTGCC 60 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 86328 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAGAG AATTTGTCGC 120 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 86388 |||||||| | | | | |||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTATC ACGCCCCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 180 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 86448 ||||| | || |||||||||| ||||| |||| |||||||||| ||||||||| |||| ||||| ATCTGGAATT GAAACAGGTG TGATACCAAA CATACCTGTA CTTGAAATAT GTGTGCCATG 240 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 86508 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| TTTGAGATTA CCATCCATCT TGAACCCGCC GAGAGTATCC TTGAGCATCA CATGATTTAC 300 TATTGATACT CATTTCAATG TAAA 86532 || ||||||| | |||||||| ||| TAGTGATACT CGTTTCAATG GAAA 324 hqPGS_C09HBa0278J12.1+_SGN-E390468+ (86209 86532) ******************************************************************************** EST sequence 142 +strand 331 n (File: SGN-E390607+) 1 TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 61 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 121 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 181 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 241 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 301 TATTGATACT CATTTCAATG TAAAAAAAAA A Predicted gene structure (within gDNA segment 85609 to 87212): Exon 1 86209 86532 ( 324 n); cDNA 1 324 ( 324 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E390607+ 1.000 324 0.979 C PGS_C09HBa0278J12.1+_SGN-E390607+ (86209 86532) Alignment (genomic DNA sequence = upper lines): TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 86268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 60 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 86328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 120 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 86388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 180 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 86448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 240 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 86508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 300 TATTGATACT CATTTCAATG TAAA 86532 |||||||||| |||||||||| |||| TATTGATACT CATTTCAATG TAAA 324 hqPGS_C09HBa0278J12.1+_SGN-E390607+ (86209 86532) ******************************************************************************** EST sequence 291 -strand 331 n (File: SGN-E390093-) 1 TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 61 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 121 CATTTTTAGC AAGTCGCTAT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 181 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 241 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 301 TATTGATACT CATTTCAATG TAAAAAAAAA A Predicted gene structure (within gDNA segment 85599 to 87202): Exon 1 86209 86532 ( 324 n); cDNA 1 324 ( 324 n); score: 0.994 MATCH C09HBa0278J12.1+ SGN-E390093- 0.994 324 0.979 C PGS_C09HBa0278J12.1+_SGN-E390093- (86209 86532) Alignment (genomic DNA sequence = upper lines): TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 86268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 60 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 86328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 120 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 86388 ||||| |||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| CATTTTTAGC AAGTCGCTAT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 180 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 86448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 240 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 86508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 300 TATTGATACT CATTTCAATG TAAA 86532 |||||||||| |||||||||| |||| TATTGATACT CATTTCAATG TAAA 324 hqPGS_C09HBa0278J12.1+_SGN-E390093- (86209 86532) ******************************************************************************** EST sequence 436 -strand 330 n (File: SGN-E390848-) 1 TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 61 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 121 CATTTCTAGC AAGTCGCTTT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 181 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 241 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 301 TATTGATACT CATTTCAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 85599 to 87246): Exon 1 86209 86532 ( 324 n); cDNA 1 324 ( 324 n); score: 0.988 MATCH C09HBa0278J12.1+ SGN-E390848- 0.988 324 0.982 C PGS_C09HBa0278J12.1+_SGN-E390848- (86209 86532) Alignment (genomic DNA sequence = upper lines): TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 86268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGCTT GATTTATTTT TTCCGGAAGT TTAGCTGTGG AATGTTAGAG TTGGACTGCC 60 ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 86328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATTGA AGCATTTTTT CTTTTGACAA TAAGTGTTGA GACATAAAAG AATTTGTCGC 120 CATTTCTAGC AAGTCGCTCT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 86388 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTAGC AAGTCGCTTT ACAATCCTTC TTATGCTAGT ATTTATATAT TTTTGATTTC 180 ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 86448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGTAGTT GAAACAGGTG TGATAACAAA CATACCTGTA GTTGAAATAT GTGTTCCATG 240 TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 86508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGATTA CCATCCATCT TGAACCCGCG GAGAGTATCC TTGAGCATCA GATGATTTAC 300 TATTGATACT CATTTCAATG TAAA 86532 |||||||||| |||||||| ||| TATTGATACT CATTTCAAAA AAAA 324 hqPGS_C09HBa0278J12.1+_SGN-E390848- (86209 86532) ******************************************************************************** EST sequence 30 +strand 330 n (File: SGN-E285047+) 1 TTGTAGCTTG ATTTATTTTT TCCGGAAGTT TAGCTGTGGA ATGTTAGAGT TGGACTGCCA 61 TTGAATTGAA GCATTTTTTC TTTTGACAAT AAGTGTTGAG ACATAAAAGA ATTTGTCGCC 121 ATTTCTAGCA AGTCGCTCTA CAATCCTTCT TATGCTAGTA TTTATATATT TTTGATTTCA 181 TCTGTAGTTG AAACAGGTGT GATAACAAAC ATACCTGTAG TTGAAATATG TGTTCCATGT 241 TTGAGATTAC CATCCATCTT GAACCCGCGG AGAGTATCCT TGAGCATCAG ATGATTTACT 301 ATTGATACTC ATTTCAATGT AAAAAAAAAA Predicted gene structure (within gDNA segment 85610 to 87212): Exon 1 86210 86532 ( 323 n); cDNA 1 323 ( 323 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E285047+ 1.000 323 0.979 C PGS_C09HBa0278J12.1+_SGN-E285047+ (86210 86532) Alignment (genomic DNA sequence = upper lines): TTGTAGCTTG ATTTATTTTT TCCGGAAGTT TAGCTGTGGA ATGTTAGAGT TGGACTGCCA 86269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGCTTG ATTTATTTTT TCCGGAAGTT TAGCTGTGGA ATGTTAGAGT TGGACTGCCA 60 TTGAATTGAA GCATTTTTTC TTTTGACAAT AAGTGTTGAG ACATAAAAGA ATTTGTCGCC 86329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATTGAA GCATTTTTTC TTTTGACAAT AAGTGTTGAG ACATAAAAGA ATTTGTCGCC 120 ATTTCTAGCA AGTCGCTCTA CAATCCTTCT TATGCTAGTA TTTATATATT TTTGATTTCA 86389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTAGCA AGTCGCTCTA CAATCCTTCT TATGCTAGTA TTTATATATT TTTGATTTCA 180 TCTGTAGTTG AAACAGGTGT GATAACAAAC ATACCTGTAG TTGAAATATG TGTTCCATGT 86449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTAGTTG AAACAGGTGT GATAACAAAC ATACCTGTAG TTGAAATATG TGTTCCATGT 240 TTGAGATTAC CATCCATCTT GAACCCGCGG AGAGTATCCT TGAGCATCAG ATGATTTACT 86509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTAC CATCCATCTT GAACCCGCGG AGAGTATCCT TGAGCATCAG ATGATTTACT 300 ATTGATACTC ATTTCAATGT AAA 86532 |||||||||| |||||||||| ||| ATTGATACTC ATTTCAATGT AAA 323 hqPGS_C09HBa0278J12.1+_SGN-E285047+ (86210 86532) ******************************************************************************** EST sequence 381 +strand 667 n (File: SGN-E345647+) 1 CACTCACACT AGGCCGTGGA CGTCGAGTTT CATCCTCAGA AGAGAAATAC AGAGAGTGTA 61 AAGATGAGCC GAGCAGCAGC AGCAGCAGTG AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC 121 GTCATTGACT GTTCGAAGCC GGTAGAAGAC AGTATCATGG AGATTGCTTC TCTTGACAAG 181 TTCCTTCAAG AGAGGATTAA GGTTGGTGGA AAAGCTGGTG CTCTTGGGGA TTCCGTTACT 241 GTTACTCGTG ACAAGAACAA GATCACCGTC ACCTGCAACT CAACTTTTTC CAAGAGGTAC 301 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG GCTTAGGGTG 361 ATTGCTTCCA ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT TGCTGAGAAT 421 GAAGCAGATG AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT TCTTTCTTTA 481 GTCGGCCTTC ACTTTTTGAT CCTTGTATCA TCACTAATGA ATCCTGTCTT CTCATTTCTA 541 GATTNTGTTT TTGCAGTTTG CTTATCAGTA AAAGAAAACA TTACATCGAT ACTTTGGTTT 601 GTCTATCTTT GGGGATAATT ATGAAAATGT CAATTTATCT GAATTGCCTT TCTCCTCTGG 661 ATGATCT Predicted gene structure (within gDNA segment 92410 to 87953): Exon 1 91810 91775 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 91774 91687 ( 88 n); Pd: 0.998 (s: 0), Pa: 0.918 (s: 1.00) Exon 2 91686 91427 ( 260 n); cDNA 37 296 ( 260 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 88933 88563 ( 371 n); cDNA 297 667 ( 371 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E345647+ 0.997 667 1.000 C PGS_C09HBa0278J12.1-_SGN-E345647+ (91810 91775,91686 91427,88933 88563) Alignment (genomic DNA sequence = upper lines): CACTCACACT AGGCCGTGGA CGTCGAGTTT CATCCTGTAC GTATGCTCCT ACTCTTTTCT 91751 |||||||||| |||||||||| |||||||||| |||||| CACTCACACT AGGCCGTGGA CGTCGAGTTT CATCCT.... .......... .......... 36 TCTCTGTTTC TCTGACGATG AGATTTGTTC TTGAGATCTG ATAATTTTTG CTTTTGAATG 91691 .......... .......... .......... .......... .......... .......... 36 CCAGCAGAAG AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA 91631 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CAGAAG AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA 92 GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG 91571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG 152 TATCATGGAG ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA 91511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATGGAG ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA 212 AGCTGGTGCT CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC 91451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTGCT CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC 272 CTGCAACTCA ACTTTTTCCA AGAGGTACTG ATTCTATTGC CTCATTTTCA GTTGTGTTTA 91391 |||||||||| |||||||||| |||| CTGCAACTCA ACTTTTTCCA AGAG...... .......... .......... .......... 296 TTTGAAAAAA AAATGATTCT AGAAACTAAA CTCTACTCGT AGATCATAAA TTACTAGCTA 91331 .......... .......... .......... .......... .......... .......... 296 CAGTCGACTT CTATTATAGT TTGATAACGA TTACACTTAC CGATTGACAG TAACTTATCG 91271 .......... .......... .......... .......... .......... .......... 296 CAGACCTATT CGATTATCCA GTGAGTTCTG TGTAGTCATT CACACATTAA GCTTTGACTC 91211 .......... .......... .......... .......... .......... .......... 296 AGTTGGTAAT CAGATAAATA TATAGTTAAT TTGATAAGTT TTTGATATTT GAATGATTAA 91151 .......... .......... .......... .......... .......... .......... 296 ATCCGACAAA CAGAACCATT TTAGACCTAC TCCTGTAGTT AAATGAACTA TTTATTTAGG 91091 .......... .......... .......... .......... .......... .......... 296 ACATTATTCT CTCTTTTTTG GTGTTTATTT TTGTACTAGA GGACGGGCTT CGCACGTGTA 91031 .......... .......... .......... .......... .......... .......... 296 TTTTATGTGA ATTTTTATAG ATATGTTATA ATGATAAAAA TTTCATGGAA ATATATATGT 90971 .......... .......... .......... .......... .......... .......... 296 AAATTAATGA ATAATATAAT GTAACAATTA CAAAATAAGA ATAAAGACTT ACGCAATAAA 90911 .......... .......... .......... .......... .......... .......... 296 ATATTCATAA AAAAACTAAA TTAAGAAGTC TGATGGTGAT AAAAATAAAA GACAAAAAAA 90851 .......... .......... .......... .......... .......... .......... 296 AGACAGATTT AAGAATGATC CAATGTAAAC AATGTTCTTA TAAGACTGAT GTATGTATAG 90791 .......... .......... .......... .......... .......... .......... 296 ATGAAAAAAA TAAGTACATA ACTCTCTGAG TTCTTATCGA CTCCTTTCAT ATCCTATCAA 90731 .......... .......... .......... .......... .......... .......... 296 AATTCAAGAG GTTTCTTCAT CTACTTTAAC TATTGAATGA AAATGATAGC CTAGTAATCT 90671 .......... .......... .......... .......... .......... .......... 296 TGGTAGGGGT TTCATGAGAT TAAAAAAGTT GAATTTATAT AGATAGAATA GAAGGAATAT 90611 .......... .......... .......... .......... .......... .......... 296 CAAAAGATAT ATTAAAGTTT TAGTTTAAAT ATTTGGAGGT TATGAATATG AAAAGATGAG 90551 .......... .......... .......... .......... .......... .......... 296 AGTTATGAAT ATTAAGAGTA TAAAGTTGAA TAAGTAATTA ACAAATAATA ATAAATAAAT 90491 .......... .......... .......... .......... .......... .......... 296 GAAGAATATG AAAAAAGAAG TTAAAATTAG CAAACCATGT AGAAAGAACA ACTAAAGGTC 90431 .......... .......... .......... .......... .......... .......... 296 TTATCACGTA ATTAAGCGTT AATAAATTTA GATTTGTGAA GATAGAGTCA TTCTTTAATA 90371 .......... .......... .......... .......... .......... .......... 296 ATAATCGAGA GGACATTATC AACGTGTGTC TCCATTTTGC AGATTTGCAC CCTTTATATT 90311 .......... .......... .......... .......... .......... .......... 296 ATTAAATTCG TTATTTATCA TAAAGGATAA TACTTTATCC ACATAAATTA TATTATTCAT 90251 .......... .......... .......... .......... .......... .......... 296 GAGAGGGGTT AAGGAAAAAG TTATGAGAAA GAGGAAAAAT ATAGCAATTT AGTAAAGACT 90191 .......... .......... .......... .......... .......... .......... 296 TTTTTTTTAA AAAAAAATTA TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA 90131 .......... .......... .......... .......... .......... .......... 296 ATTAATTGGA TATTTAATTA GAAATCAATC TTTAGAAGTC TAAAAGTCAT TAACCTTTTA 90071 .......... .......... .......... .......... .......... .......... 296 ATTAAATTTA TACAATCAAA TATTTAAATA TTTTATAACA ATTTAATTTA TAGGAGGGGT 90011 .......... .......... .......... .......... .......... .......... 296 AAAACTGTAA TTCAACTTTC AACTTTTTTT GTTGATGCTT TTAGTAATAC ATGATGAATT 89951 .......... .......... .......... .......... .......... .......... 296 AAGAGTGCCC AGACTTGAAG CACAGTTCCA CTCTGGATTT ATCACTGTTT ATTTATCCAA 89891 .......... .......... .......... .......... .......... .......... 296 AAACACTATC CTGTTTACAT TGGGAAATCA GTAGAAACAG AATGACTAAA ACAGCAGTGT 89831 .......... .......... .......... .......... .......... .......... 296 GTTCTAAGTT CGCATGATCG TTGAAGCCTT TACTAAGCTT ATGGTACAGA TAGTCTATAT 89771 .......... .......... .......... .......... .......... .......... 296 GCTTTATGAT TAAGCAACTA TGTCTGGGTC CCAAATTAGA AGTCAGGGTT GGCTTTTATT 89711 .......... .......... .......... .......... .......... .......... 296 GGAGTTTGAT TGTTTTTACA ACTGACAGTC TGATATTAAC TTATTCATAG CTTCTTTTAT 89651 .......... .......... .......... .......... .......... .......... 296 TTTGGCTCGT CTCTGCTTTA CAAAGATTTC TTATTTGGAT AGTGCAACAG CAACAACACC 89591 .......... .......... .......... .......... .......... .......... 296 ATACCCCATG TAACCCACAA GTGAGGTCTG GGGAGGGTAG AGACTCTGCA CTATCCGTTA 89531 .......... .......... .......... .......... .......... .......... 296 AGTGTAAGCA TACCTTCTTG GATAGTGCAG ATATTCATAA ATCGCGCTCT TGCTAATGAT 89471 .......... .......... .......... .......... .......... .......... 296 TTTAAAAGGA AGTCGTTTTA ACTGTTTATT ATAGTTAGAG TTCCCTGCAC TGCAAGTCTA 89411 .......... .......... .......... .......... .......... .......... 296 AAAGAAGCTC TCTTCTGTTC AGGATTGTTA TACTGAACAT GATGAGTTTA TATCGTTCTG 89351 .......... .......... .......... .......... .......... .......... 296 TTGTTTGTTT ATCTAATGCA TTATCCTATT TACATCGAGA AACAAAAAAA CAATTGAAAC 89291 .......... .......... .......... .......... .......... .......... 296 GAAAATGAAA GCATAACATC TTGGTGTTCT GGTTTCATCC GTTTTATGTT TCTAAGCTTG 89231 .......... .......... .......... .......... .......... .......... 296 TTTTGGAAGT GACATCAACC ATTTACTAGC TTCACCATTC ACCTACACAT CTTAGGCTTG 89171 .......... .......... .......... .......... .......... .......... 296 AGTGATATTC TAAAGGCTAT TTGTAAAAGA AACTGAGAGT CTAAAACATT ATATCAATTT 89111 .......... .......... .......... .......... .......... .......... 296 ACTTTGGGGT AAATTATGTA TGCCCGATTG ATGAAAGAAG TTCTTGTGAT GTAGAGTTGT 89051 .......... .......... .......... .......... .......... .......... 296 TGCTATGTAT TCTACTCCTA CCCCTTCAAA ACCAAAAGAA CAGAGTGTTA AAAGTAGTGA 88991 .......... .......... .......... .......... .......... .......... 296 AATCAGGCAA CCGAGGCTAG TAAACAACAG CTCGACTTAC AATCTTCTAT TATTCAGGTA 88931 ||| .......... .......... .......... .......... .......... .......GTA 299 CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAATAAC GTCAGGGATT GGCTTAGGGT 88871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAATAAC GTCAGGGATT GGCTTAGGGT 359 GATTGCTTCC AACAAGGACA GGAATGTTTA CGAATTGCGC TACTTCAACA TTGCTGAGAA 88811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGCTTCC AACAAGGACA GGAATGTTTA CGAATTGCGC TACTTCAACA TTGCTGAGAA 419 TGAAGCAGAT GAAGAAGATT AAACATGACC ATTCAATGTC TCTCTTTATC TTCTTTCTTT 88751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAGAT GAAGAAGATT AAACATGACC ATTCAATGTC TCTCTTTATC TTCTTTCTTT 479 AGTCGGCCTT CACTTTTTGA TCCTTGTATC ATCACTAATG AATCCTGTCT TCTCATTTCT 88691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCGGCCTT CACTTTTTGA TCCTTGTATC ATCACTAATG AATCCTGTCT TCTCATTTCT 539 AGATTTTGTT TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA TACTTTGGTT 88631 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTNTGTT TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA TACTTTGGTT 599 TGTCTATCTT TGGGGATAAT TATGAAAATG TCAATTTATC TGTATTGCCT TTCTCCTCTG 88571 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGTCTATCTT TGGGGATAAT TATGAAAATG TCAATTTATC TGAATTGCCT TTCTCCTCTG 659 GATGATCT 88563 |||||||| GATGATCT 667 hqPGS_C09HBa0278J12.1-_SGN-E345647+ (91810 91775,91686 91427,88933 88563) ******************************************************************************** EST sequence 35 -strand 680 n (File: SGN-E371903-) 1 TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG CAGCAGCAGT 61 GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC CAGTGGAGGA 121 CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA AGGTTGGTGG 181 AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA AAATCACCGT 241 CACTTGCAAC TCCACTTTTT CCAAGAGGTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA 301 GAAAAACAAC GTTAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA 361 TGAGTTGCGC TACTTCAACA TTGCCGAGAA TGAAGCAGAT GAAGAAGATT AAACATGTCT 421 AGTCAATGTC CCTTTTATCT TCTTATTTTG AACCTTATAT CATCTGTTTG AGTTATTAAT 481 GAGCCGTATC TTCTCATTTC CAGATTATTG ATTTTTTGTC CCCTTATCAG TAAAAGAAAA 541 CGTTACTTTG ATACACTTTG GTTTGTTCAT CTCTGGGGTC AAGTTTTTGC AAGGCATCAA 601 TTTCTCTGTA TTGCCTTTTC CCTCTTGATG ATCACATGTA ATTTATAGAG TTTATCTTTT 661 GTTGTTCTTG GAAAAAAAAA Predicted gene structure (within gDNA segment 92585 to 85554): Exon 1 91698 91427 ( 272 n); cDNA 1 267 ( 267 n); score: 0.915 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88567 ( 367 n); cDNA 268 630 ( 363 n); score: 0.794 MATCH C09HBa0278J12.1- SGN-E371903- 0.846 639 0.940 C PGS_C09HBa0278J12.1-_SGN-E371903- (91698 91427,88933 88567) Alignment (genomic DNA sequence = upper lines): TTTGAATGCC AGCAGAAGAG AAATACAGAG AGTGTAAAGA TGAGCCGAGC AGCAGCAGCA 91639 ||||||| | |||||||||| |||| || || || ||||||| |||||| | |||||||||| TTTGAATAGC AGCAGAAGAG AAAT-CA-AG AGCGTAAAGA TGAGCC--G- AGCAGCAGCA 55 GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA AGCTTCGTCA TTGACTGTTC GAAGCCGGTA 91579 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||| || GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA AGCTTCGTCA TCGACTGTTC GAAGCCAGTG 115 GAAGACAGTA TCATGGAGAT TGCTTCTCTT GACAAGTTCC TTCAAGAGAG GATTAAGGTT 91519 || ||||||| | |||||||| |||||||||| |||||||||| | |||||||| ||||||||| GAGGACAGTA TTATGGAGAT TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT 175 GGTGGAAAAG CTGGTGCTCT TGGGGATTCC GTTACTGTTA CTCGTGACAA GAACAAGATC 91459 |||||||||| ||||||| || ||| |||||| |||||||| | ||||||| || ||| || ||| GGTGGAAAAG CTGGTGCACT TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC 235 ACCGTCACCT GCAACTCAAC TTTTTCCAAG AGGTACTGAT TCTATTGCCT CATTTTCAGT 91399 |||||||| | ||||||| || |||||||||| || ACCGTCACTT GCAACTCCAC TTTTTCCAAG AG........ .......... .......... 267 TGTGTTTATT TGAAAAAAAA ATGATTCTAG AAACTAAACT CTACTCGTAG ATCATAAATT 91339 .......... .......... .......... .......... .......... .......... 267 ACTAGCTACA GTCGACTTCT ATTATAGTTT GATAACGATT ACACTTACCG ATTGACAGTA 91279 .......... .......... .......... .......... .......... .......... 267 ACTTATCGCA GACCTATTCG ATTATCCAGT GAGTTCTGTG TAGTCATTCA CACATTAAGC 91219 .......... .......... .......... .......... .......... .......... 267 TTTGACTCAG TTGGTAATCA GATAAATATA TAGTTAATTT GATAAGTTTT TGATATTTGA 91159 .......... .......... .......... .......... .......... .......... 267 ATGATTAAAT CCGACAAACA GAACCATTTT AGACCTACTC CTGTAGTTAA ATGAACTATT 91099 .......... .......... .......... .......... .......... .......... 267 TATTTAGGAC ATTATTCTCT CTTTTTTGGT GTTTATTTTT GTACTAGAGG ACGGGCTTCG 91039 .......... .......... .......... .......... .......... .......... 267 CACGTGTATT TTATGTGAAT TTTTATAGAT ATGTTATAAT GATAAAAATT TCATGGAAAT 90979 .......... .......... .......... .......... .......... .......... 267 ATATATGTAA ATTAATGAAT AATATAATGT AACAATTACA AAATAAGAAT AAAGACTTAC 90919 .......... .......... .......... .......... .......... .......... 267 GCAATAAAAT ATTCATAAAA AAACTAAATT AAGAAGTCTG ATGGTGATAA AAATAAAAGA 90859 .......... .......... .......... .......... .......... .......... 267 CAAAAAAAAG ACAGATTTAA GAATGATCCA ATGTAAACAA TGTTCTTATA AGACTGATGT 90799 .......... .......... .......... .......... .......... .......... 267 ATGTATAGAT GAAAAAAATA AGTACATAAC TCTCTGAGTT CTTATCGACT CCTTTCATAT 90739 .......... .......... .......... .......... .......... .......... 267 CCTATCAAAA TTCAAGAGGT TTCTTCATCT ACTTTAACTA TTGAATGAAA ATGATAGCCT 90679 .......... .......... .......... .......... .......... .......... 267 AGTAATCTTG GTAGGGGTTT CATGAGATTA AAAAAGTTGA ATTTATATAG ATAGAATAGA 90619 .......... .......... .......... .......... .......... .......... 267 AGGAATATCA AAAGATATAT TAAAGTTTTA GTTTAAATAT TTGGAGGTTA TGAATATGAA 90559 .......... .......... .......... .......... .......... .......... 267 AAGATGAGAG TTATGAATAT TAAGAGTATA AAGTTGAATA AGTAATTAAC AAATAATAAT 90499 .......... .......... .......... .......... .......... .......... 267 AAATAAATGA AGAATATGAA AAAAGAAGTT AAAATTAGCA AACCATGTAG AAAGAACAAC 90439 .......... .......... .......... .......... .......... .......... 267 TAAAGGTCTT ATCACGTAAT TAAGCGTTAA TAAATTTAGA TTTGTGAAGA TAGAGTCATT 90379 .......... .......... .......... .......... .......... .......... 267 CTTTAATAAT AATCGAGAGG ACATTATCAA CGTGTGTCTC CATTTTGCAG ATTTGCACCC 90319 .......... .......... .......... .......... .......... .......... 267 TTTATATTAT TAAATTCGTT ATTTATCATA AAGGATAATA CTTTATCCAC ATAAATTATA 90259 .......... .......... .......... .......... .......... .......... 267 TTATTCATGA GAGGGGTTAA GGAAAAAGTT ATGAGAAAGA GGAAAAATAT AGCAATTTAG 90199 .......... .......... .......... .......... .......... .......... 267 TAAAGACTTT TTTTTTAAAA AAAAATTATA ATTATTATAT ACATATAGAT TATAGATGAT 90139 .......... .......... .......... .......... .......... .......... 267 AAATATTAAT TAATTGGATA TTTAATTAGA AATCAATCTT TAGAAGTCTA AAAGTCATTA 90079 .......... .......... .......... .......... .......... .......... 267 ACCTTTTAAT TAAATTTATA CAATCAAATA TTTAAATATT TTATAACAAT TTAATTTATA 90019 .......... .......... .......... .......... .......... .......... 267 GGAGGGGTAA AACTGTAATT CAACTTTCAA CTTTTTTTGT TGATGCTTTT AGTAATACAT 89959 .......... .......... .......... .......... .......... .......... 267 GATGAATTAA GAGTGCCCAG ACTTGAAGCA CAGTTCCACT CTGGATTTAT CACTGTTTAT 89899 .......... .......... .......... .......... .......... .......... 267 TTATCCAAAA ACACTATCCT GTTTACATTG GGAAATCAGT AGAAACAGAA TGACTAAAAC 89839 .......... .......... .......... .......... .......... .......... 267 AGCAGTGTGT TCTAAGTTCG CATGATCGTT GAAGCCTTTA CTAAGCTTAT GGTACAGATA 89779 .......... .......... .......... .......... .......... .......... 267 GTCTATATGC TTTATGATTA AGCAACTATG TCTGGGTCCC AAATTAGAAG TCAGGGTTGG 89719 .......... .......... .......... .......... .......... .......... 267 CTTTTATTGG AGTTTGATTG TTTTTACAAC TGACAGTCTG ATATTAACTT ATTCATAGCT 89659 .......... .......... .......... .......... .......... .......... 267 TCTTTTATTT TGGCTCGTCT CTGCTTTACA AAGATTTCTT ATTTGGATAG TGCAACAGCA 89599 .......... .......... .......... .......... .......... .......... 267 ACAACACCAT ACCCCATGTA ACCCACAAGT GAGGTCTGGG GAGGGTAGAG ACTCTGCACT 89539 .......... .......... .......... .......... .......... .......... 267 ATCCGTTAAG TGTAAGCATA CCTTCTTGGA TAGTGCAGAT ATTCATAAAT CGCGCTCTTG 89479 .......... .......... .......... .......... .......... .......... 267 CTAATGATTT TAAAAGGAAG TCGTTTTAAC TGTTTATTAT AGTTAGAGTT CCCTGCACTG 89419 .......... .......... .......... .......... .......... .......... 267 CAAGTCTAAA AGAAGCTCTC TTCTGTTCAG GATTGTTATA CTGAACATGA TGAGTTTATA 89359 .......... .......... .......... .......... .......... .......... 267 TCGTTCTGTT GTTTGTTTAT CTAATGCATT ATCCTATTTA CATCGAGAAA CAAAAAAACA 89299 .......... .......... .......... .......... .......... .......... 267 ATTGAAACGA AAATGAAAGC ATAACATCTT GGTGTTCTGG TTTCATCCGT TTTATGTTTC 89239 .......... .......... .......... .......... .......... .......... 267 TAAGCTTGTT TTGGAAGTGA CATCAACCAT TTACTAGCTT CACCATTCAC CTACACATCT 89179 .......... .......... .......... .......... .......... .......... 267 TAGGCTTGAG TGATATTCTA AAGGCTATTT GTAAAAGAAA CTGAGAGTCT AAAACATTAT 89119 .......... .......... .......... .......... .......... .......... 267 ATCAATTTAC TTTGGGGTAA ATTATGTATG CCCGATTGAT GAAAGAAGTT CTTGTGATGT 89059 .......... .......... .......... .......... .......... .......... 267 AGAGTTGTTG CTATGTATTC TACTCCTACC CCTTCAAAAC CAAAAGAACA GAGTGTTAAA 88999 .......... .......... .......... .......... .......... .......... 267 AGTAGTGAAA TCAGGCAACC GAGGCTAGTA AACAACAGCT CGACTTACAA TCTTCTATTA 88939 .......... .......... .......... .......... .......... .......... 267 TTCAGGTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAATAACGT CAGGGATTGG 88879 ||||| |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| .....GTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 322 CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTACG AATTGCGCTA CTTCAACATT 88819 |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| |||||||||| CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 382 GCTGAGAATG AAGCAGATGA AGAAGATTAA ACATGACCAT TCAATGTCTC TCTTTATCTT 88759 || ||||||| |||||||||| |||||||||| ||||| | | |||||||| | | |||||||| GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAATGTCCC T-TTTATCTT 441 CTTTCTTTAG TCGGCCTTCA CTTTTTGATC CTTGTATCA- TCACTAATGA ATCCTGTCTT 88700 | || ||| | |||| | | | || | ||| | | | | |||||| | | |||| C-TTATTT-- TGAACCTT-A ---TATCAT- C-TGTTTGAG TTATTAATGA GCCGTATCTT 492 CTCATTTCTA GATT-TTGTT TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA 88641 |||||||| | |||| ||| | ||| || ||||||||| |||||||||| |||| | || CTCATTTCCA GATTATTGAT TTT-TTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA 551 T--ACTTTGG TTTGTCTATC TTTGGGGATA A--TTATG-A AAATGTCAAT TTATCTGTAT 88586 | ||||||| ||||| ||| | ||||| | | || || | | ||||| || ||||||| TACACTTTGG TTTGTTCATC TCTGGGGTCA AGTTTTTGCA AGGCATCAAT TTCTCTGTAT 611 TGCCTTTCTC CTCTGGATG 88567 ||||||| | |||| |||| TGCCTTTTCC CTCTTGATG 630 hqPGS_C09HBa0278J12.1-_SGN-E371903- (91698 91427,88933 88567) ******************************************************************************** EST sequence 415 +strand 427 n (File: SGN-E287536+) 1 ACTGTTACTC GTGACAAGAA CAAGATCACC GTCACCTGCA ACTCAACTTT TTCCAAGAGG 61 TACCTCAAAT ACCTTGTCAA AAAGTACTTG AAGAAAAATA ACGTCAGGGA TTGGCTTAGG 121 GTGATTGCTT CCAACAAGGA CAGGAATGTT TACGAATTGC GCTACTTCAA CATTGCTGAG 181 AATGAAGCAG ATGAAGAAGA TTAAACATGA CCATTCAATG TCTCTCTTTA TCTTCTTTCT 241 TTAGTCGGCC TTCACTTTTT GATCCTTGTA TCATCACTAA TGAATCCTGT CTTCTCATTT 301 CTAGATTTTG TTTTTGCAGT TTGCTTATCA GTAAAAGAAA ACATTACATC GATACTTTGG 361 TTTGTCTATC TTTGGGGATA ATTATGAAAA TGTCAATTTA TCTGTATTGC CTTTCAAAAA 421 AAAAAAA Predicted gene structure (within gDNA segment 92085 to 87848): Exon 1 91485 91427 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 88933 88578 ( 356 n); cDNA 60 415 ( 356 n); score: 1.000 Intron 2 88577 88373 ( 205 n); Pd: 0.000 (s: 1.00), Pa: 0.988 (s: 0) Exon 3 88372 88361 ( 12 n); cDNA 416 427 ( 12 n); score: 0.583 MATCH C09HBa0278J12.1- SGN-E287536+ 1.000 427 1.000 C PGS_C09HBa0278J12.1-_SGN-E287536+ (91485 91427,88933 88578,88372 88361) Alignment (genomic DNA sequence = upper lines): ACTGTTACTC GTGACAAGAA CAAGATCACC GTCACCTGCA ACTCAACTTT TTCCAAGAGG 91426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTGTTACTC GTGACAAGAA CAAGATCACC GTCACCTGCA ACTCAACTTT TTCCAAGAG. 59 TACTGATTCT ATTGCCTCAT TTTCAGTTGT GTTTATTTGA AAAAAAAATG ATTCTAGAAA 91366 .......... .......... .......... .......... .......... .......... 59 CTAAACTCTA CTCGTAGATC ATAAATTACT AGCTACAGTC GACTTCTATT ATAGTTTGAT 91306 .......... .......... .......... .......... .......... .......... 59 AACGATTACA CTTACCGATT GACAGTAACT TATCGCAGAC CTATTCGATT ATCCAGTGAG 91246 .......... .......... .......... .......... .......... .......... 59 TTCTGTGTAG TCATTCACAC ATTAAGCTTT GACTCAGTTG GTAATCAGAT AAATATATAG 91186 .......... .......... .......... .......... .......... .......... 59 TTAATTTGAT AAGTTTTTGA TATTTGAATG ATTAAATCCG ACAAACAGAA CCATTTTAGA 91126 .......... .......... .......... .......... .......... .......... 59 CCTACTCCTG TAGTTAAATG AACTATTTAT TTAGGACATT ATTCTCTCTT TTTTGGTGTT 91066 .......... .......... .......... .......... .......... .......... 59 TATTTTTGTA CTAGAGGACG GGCTTCGCAC GTGTATTTTA TGTGAATTTT TATAGATATG 91006 .......... .......... .......... .......... .......... .......... 59 TTATAATGAT AAAAATTTCA TGGAAATATA TATGTAAATT AATGAATAAT ATAATGTAAC 90946 .......... .......... .......... .......... .......... .......... 59 AATTACAAAA TAAGAATAAA GACTTACGCA ATAAAATATT CATAAAAAAA CTAAATTAAG 90886 .......... .......... .......... .......... .......... .......... 59 AAGTCTGATG GTGATAAAAA TAAAAGACAA AAAAAAGACA GATTTAAGAA TGATCCAATG 90826 .......... .......... .......... .......... .......... .......... 59 TAAACAATGT TCTTATAAGA CTGATGTATG TATAGATGAA AAAAATAAGT ACATAACTCT 90766 .......... .......... .......... .......... .......... .......... 59 CTGAGTTCTT ATCGACTCCT TTCATATCCT ATCAAAATTC AAGAGGTTTC TTCATCTACT 90706 .......... .......... .......... .......... .......... .......... 59 TTAACTATTG AATGAAAATG ATAGCCTAGT AATCTTGGTA GGGGTTTCAT GAGATTAAAA 90646 .......... .......... .......... .......... .......... .......... 59 AAGTTGAATT TATATAGATA GAATAGAAGG AATATCAAAA GATATATTAA AGTTTTAGTT 90586 .......... .......... .......... .......... .......... .......... 59 TAAATATTTG GAGGTTATGA ATATGAAAAG ATGAGAGTTA TGAATATTAA GAGTATAAAG 90526 .......... .......... .......... .......... .......... .......... 59 TTGAATAAGT AATTAACAAA TAATAATAAA TAAATGAAGA ATATGAAAAA AGAAGTTAAA 90466 .......... .......... .......... .......... .......... .......... 59 ATTAGCAAAC CATGTAGAAA GAACAACTAA AGGTCTTATC ACGTAATTAA GCGTTAATAA 90406 .......... .......... .......... .......... .......... .......... 59 ATTTAGATTT GTGAAGATAG AGTCATTCTT TAATAATAAT CGAGAGGACA TTATCAACGT 90346 .......... .......... .......... .......... .......... .......... 59 GTGTCTCCAT TTTGCAGATT TGCACCCTTT ATATTATTAA ATTCGTTATT TATCATAAAG 90286 .......... .......... .......... .......... .......... .......... 59 GATAATACTT TATCCACATA AATTATATTA TTCATGAGAG GGGTTAAGGA AAAAGTTATG 90226 .......... .......... .......... .......... .......... .......... 59 AGAAAGAGGA AAAATATAGC AATTTAGTAA AGACTTTTTT TTTAAAAAAA AATTATAATT 90166 .......... .......... .......... .......... .......... .......... 59 ATTATATACA TATAGATTAT AGATGATAAA TATTAATTAA TTGGATATTT AATTAGAAAT 90106 .......... .......... .......... .......... .......... .......... 59 CAATCTTTAG AAGTCTAAAA GTCATTAACC TTTTAATTAA ATTTATACAA TCAAATATTT 90046 .......... .......... .......... .......... .......... .......... 59 AAATATTTTA TAACAATTTA ATTTATAGGA GGGGTAAAAC TGTAATTCAA CTTTCAACTT 89986 .......... .......... .......... .......... .......... .......... 59 TTTTTGTTGA TGCTTTTAGT AATACATGAT GAATTAAGAG TGCCCAGACT TGAAGCACAG 89926 .......... .......... .......... .......... .......... .......... 59 TTCCACTCTG GATTTATCAC TGTTTATTTA TCCAAAAACA CTATCCTGTT TACATTGGGA 89866 .......... .......... .......... .......... .......... .......... 59 AATCAGTAGA AACAGAATGA CTAAAACAGC AGTGTGTTCT AAGTTCGCAT GATCGTTGAA 89806 .......... .......... .......... .......... .......... .......... 59 GCCTTTACTA AGCTTATGGT ACAGATAGTC TATATGCTTT ATGATTAAGC AACTATGTCT 89746 .......... .......... .......... .......... .......... .......... 59 GGGTCCCAAA TTAGAAGTCA GGGTTGGCTT TTATTGGAGT TTGATTGTTT TTACAACTGA 89686 .......... .......... .......... .......... .......... .......... 59 CAGTCTGATA TTAACTTATT CATAGCTTCT TTTATTTTGG CTCGTCTCTG CTTTACAAAG 89626 .......... .......... .......... .......... .......... .......... 59 ATTTCTTATT TGGATAGTGC AACAGCAACA ACACCATACC CCATGTAACC CACAAGTGAG 89566 .......... .......... .......... .......... .......... .......... 59 GTCTGGGGAG GGTAGAGACT CTGCACTATC CGTTAAGTGT AAGCATACCT TCTTGGATAG 89506 .......... .......... .......... .......... .......... .......... 59 TGCAGATATT CATAAATCGC GCTCTTGCTA ATGATTTTAA AAGGAAGTCG TTTTAACTGT 89446 .......... .......... .......... .......... .......... .......... 59 TTATTATAGT TAGAGTTCCC TGCACTGCAA GTCTAAAAGA AGCTCTCTTC TGTTCAGGAT 89386 .......... .......... .......... .......... .......... .......... 59 TGTTATACTG AACATGATGA GTTTATATCG TTCTGTTGTT TGTTTATCTA ATGCATTATC 89326 .......... .......... .......... .......... .......... .......... 59 CTATTTACAT CGAGAAACAA AAAAACAATT GAAACGAAAA TGAAAGCATA ACATCTTGGT 89266 .......... .......... .......... .......... .......... .......... 59 GTTCTGGTTT CATCCGTTTT ATGTTTCTAA GCTTGTTTTG GAAGTGACAT CAACCATTTA 89206 .......... .......... .......... .......... .......... .......... 59 CTAGCTTCAC CATTCACCTA CACATCTTAG GCTTGAGTGA TATTCTAAAG GCTATTTGTA 89146 .......... .......... .......... .......... .......... .......... 59 AAAGAAACTG AGAGTCTAAA ACATTATATC AATTTACTTT GGGGTAAATT ATGTATGCCC 89086 .......... .......... .......... .......... .......... .......... 59 GATTGATGAA AGAAGTTCTT GTGATGTAGA GTTGTTGCTA TGTATTCTAC TCCTACCCCT 89026 .......... .......... .......... .......... .......... .......... 59 TCAAAACCAA AAGAACAGAG TGTTAAAAGT AGTGAAATCA GGCAACCGAG GCTAGTAAAC 88966 .......... .......... .......... .......... .......... .......... 59 AACAGCTCGA CTTACAATCT TCTATTATTC AGGTACCTCA AATACCTTGT CAAAAAGTAC 88906 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTACCTCA AATACCTTGT CAAAAAGTAC 87 TTGAAGAAAA ATAACGTCAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT 88846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGAAAA ATAACGTCAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT 147 GTTTACGAAT TGCGCTACTT CAACATTGCT GAGAATGAAG CAGATGAAGA AGATTAAACA 88786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTACGAAT TGCGCTACTT CAACATTGCT GAGAATGAAG CAGATGAAGA AGATTAAACA 207 TGACCATTCA ATGTCTCTCT TTATCTTCTT TCTTTAGTCG GCCTTCACTT TTTGATCCTT 88726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCATTCA ATGTCTCTCT TTATCTTCTT TCTTTAGTCG GCCTTCACTT TTTGATCCTT 267 GTATCATCAC TAATGAATCC TGTCTTCTCA TTTCTAGATT TTGTTTTTGC AGTTTGCTTA 88666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCATCAC TAATGAATCC TGTCTTCTCA TTTCTAGATT TTGTTTTTGC AGTTTGCTTA 327 TCAGTAAAAG AAAACATTAC ATCGATACTT TGGTTTGTCT ATCTTTGGGG ATAATTATGA 88606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTAAAAG AAAACATTAC ATCGATACTT TGGTTTGTCT ATCTTTGGGG ATAATTATGA 387 AAATGTCAAT TTATCTGTAT TGCCTTTCTC CTCTGGATGA TCTCAAGACA TATATAAGAT 88546 |||||||||| |||||||||| |||||||| AAATGTCAAT TTATCTGTAT TGCCTTTC.. .......... .......... .......... 415 TAAAATAGAT ATAATATCTC ATAATTAATT CTTTTTATGT TGCACATAAA TGAAAACAAA 88486 .......... .......... .......... .......... .......... .......... 415 TAATTTGAAG TGGAGAGAGG TTTTACACTT GCTAGGAAGA ATTATATGTT ATTGTATGCC 88426 .......... .......... .......... .......... .......... .......... 415 TGAAAATCTG TACTGTCGAC TCACATTTTT CTGTTGTTTT GAAATGTGGG CAGGGAAAGT 88366 ||| .......... .......... .......... .......... .......... ...AAAAAAA 422 GAAAA 88361 |||| AAAAA 427 hqPGS_C09HBa0278J12.1-_SGN-E287536+ (91485 91427,88933 88578) ******************************************************************************** EST sequence 274 +strand 609 n (File: SGN-E353870+) 1 AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG 61 AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG 121 ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT 181 CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA 241 ACTTTTTCCA AGAGGTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAATAACGTC 301 AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTACGA ATTGCGCTAC 361 TTCAACATTG CTGAGAATGA AGCAGATGAA GAAGATTAAA CATGACCATT CAATGTCTCT 421 CTTTATCTTC TTTCTTTAGT CGGCCTTCAC TTTTTGATCC TTGTATCATC ACTAATGAAT 481 CCTGTCTTCT CATTTCTAGA TTTTGTTTTT GCAGTTTGCT TATCAGTAAA AGAAAACATT 541 ACATCGATAC TTTGGTTTGT CTATCTTTGG GGATAATTAT GAAAATGTCA ATTTATCTGT 601 ATTGCCTTT Predicted gene structure (within gDNA segment 92280 to 87969): Exon 1 91680 91427 ( 254 n); cDNA 1 254 ( 254 n); score: 1.000 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 88933 88579 ( 355 n); cDNA 255 609 ( 355 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E353870+ 1.000 609 1.000 C PGS_C09HBa0278J12.1-_SGN-E353870+ (91680 91427,88933 88579) Alignment (genomic DNA sequence = upper lines): AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG 91621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG 60 AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG 91561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG 120 ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT 91501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT 180 CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA 91441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA 240 ACTTTTTCCA AGAGGTACTG ATTCTATTGC CTCATTTTCA GTTGTGTTTA TTTGAAAAAA 91381 |||||||||| |||| ACTTTTTCCA AGAG...... .......... .......... .......... .......... 254 AAATGATTCT AGAAACTAAA CTCTACTCGT AGATCATAAA TTACTAGCTA CAGTCGACTT 91321 .......... .......... .......... .......... .......... .......... 254 CTATTATAGT TTGATAACGA TTACACTTAC CGATTGACAG TAACTTATCG CAGACCTATT 91261 .......... .......... .......... .......... .......... .......... 254 CGATTATCCA GTGAGTTCTG TGTAGTCATT CACACATTAA GCTTTGACTC AGTTGGTAAT 91201 .......... .......... .......... .......... .......... .......... 254 CAGATAAATA TATAGTTAAT TTGATAAGTT TTTGATATTT GAATGATTAA ATCCGACAAA 91141 .......... .......... .......... .......... .......... .......... 254 CAGAACCATT TTAGACCTAC TCCTGTAGTT AAATGAACTA TTTATTTAGG ACATTATTCT 91081 .......... .......... .......... .......... .......... .......... 254 CTCTTTTTTG GTGTTTATTT TTGTACTAGA GGACGGGCTT CGCACGTGTA TTTTATGTGA 91021 .......... .......... .......... .......... .......... .......... 254 ATTTTTATAG ATATGTTATA ATGATAAAAA TTTCATGGAA ATATATATGT AAATTAATGA 90961 .......... .......... .......... .......... .......... .......... 254 ATAATATAAT GTAACAATTA CAAAATAAGA ATAAAGACTT ACGCAATAAA ATATTCATAA 90901 .......... .......... .......... .......... .......... .......... 254 AAAAACTAAA TTAAGAAGTC TGATGGTGAT AAAAATAAAA GACAAAAAAA AGACAGATTT 90841 .......... .......... .......... .......... .......... .......... 254 AAGAATGATC CAATGTAAAC AATGTTCTTA TAAGACTGAT GTATGTATAG ATGAAAAAAA 90781 .......... .......... .......... .......... .......... .......... 254 TAAGTACATA ACTCTCTGAG TTCTTATCGA CTCCTTTCAT ATCCTATCAA AATTCAAGAG 90721 .......... .......... .......... .......... .......... .......... 254 GTTTCTTCAT CTACTTTAAC TATTGAATGA AAATGATAGC CTAGTAATCT TGGTAGGGGT 90661 .......... .......... .......... .......... .......... .......... 254 TTCATGAGAT TAAAAAAGTT GAATTTATAT AGATAGAATA GAAGGAATAT CAAAAGATAT 90601 .......... .......... .......... .......... .......... .......... 254 ATTAAAGTTT TAGTTTAAAT ATTTGGAGGT TATGAATATG AAAAGATGAG AGTTATGAAT 90541 .......... .......... .......... .......... .......... .......... 254 ATTAAGAGTA TAAAGTTGAA TAAGTAATTA ACAAATAATA ATAAATAAAT GAAGAATATG 90481 .......... .......... .......... .......... .......... .......... 254 AAAAAAGAAG TTAAAATTAG CAAACCATGT AGAAAGAACA ACTAAAGGTC TTATCACGTA 90421 .......... .......... .......... .......... .......... .......... 254 ATTAAGCGTT AATAAATTTA GATTTGTGAA GATAGAGTCA TTCTTTAATA ATAATCGAGA 90361 .......... .......... .......... .......... .......... .......... 254 GGACATTATC AACGTGTGTC TCCATTTTGC AGATTTGCAC CCTTTATATT ATTAAATTCG 90301 .......... .......... .......... .......... .......... .......... 254 TTATTTATCA TAAAGGATAA TACTTTATCC ACATAAATTA TATTATTCAT GAGAGGGGTT 90241 .......... .......... .......... .......... .......... .......... 254 AAGGAAAAAG TTATGAGAAA GAGGAAAAAT ATAGCAATTT AGTAAAGACT TTTTTTTTAA 90181 .......... .......... .......... .......... .......... .......... 254 AAAAAAATTA TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATTAATTGGA 90121 .......... .......... .......... .......... .......... .......... 254 TATTTAATTA GAAATCAATC TTTAGAAGTC TAAAAGTCAT TAACCTTTTA ATTAAATTTA 90061 .......... .......... .......... .......... .......... .......... 254 TACAATCAAA TATTTAAATA TTTTATAACA ATTTAATTTA TAGGAGGGGT AAAACTGTAA 90001 .......... .......... .......... .......... .......... .......... 254 TTCAACTTTC AACTTTTTTT GTTGATGCTT TTAGTAATAC ATGATGAATT AAGAGTGCCC 89941 .......... .......... .......... .......... .......... .......... 254 AGACTTGAAG CACAGTTCCA CTCTGGATTT ATCACTGTTT ATTTATCCAA AAACACTATC 89881 .......... .......... .......... .......... .......... .......... 254 CTGTTTACAT TGGGAAATCA GTAGAAACAG AATGACTAAA ACAGCAGTGT GTTCTAAGTT 89821 .......... .......... .......... .......... .......... .......... 254 CGCATGATCG TTGAAGCCTT TACTAAGCTT ATGGTACAGA TAGTCTATAT GCTTTATGAT 89761 .......... .......... .......... .......... .......... .......... 254 TAAGCAACTA TGTCTGGGTC CCAAATTAGA AGTCAGGGTT GGCTTTTATT GGAGTTTGAT 89701 .......... .......... .......... .......... .......... .......... 254 TGTTTTTACA ACTGACAGTC TGATATTAAC TTATTCATAG CTTCTTTTAT TTTGGCTCGT 89641 .......... .......... .......... .......... .......... .......... 254 CTCTGCTTTA CAAAGATTTC TTATTTGGAT AGTGCAACAG CAACAACACC ATACCCCATG 89581 .......... .......... .......... .......... .......... .......... 254 TAACCCACAA GTGAGGTCTG GGGAGGGTAG AGACTCTGCA CTATCCGTTA AGTGTAAGCA 89521 .......... .......... .......... .......... .......... .......... 254 TACCTTCTTG GATAGTGCAG ATATTCATAA ATCGCGCTCT TGCTAATGAT TTTAAAAGGA 89461 .......... .......... .......... .......... .......... .......... 254 AGTCGTTTTA ACTGTTTATT ATAGTTAGAG TTCCCTGCAC TGCAAGTCTA AAAGAAGCTC 89401 .......... .......... .......... .......... .......... .......... 254 TCTTCTGTTC AGGATTGTTA TACTGAACAT GATGAGTTTA TATCGTTCTG TTGTTTGTTT 89341 .......... .......... .......... .......... .......... .......... 254 ATCTAATGCA TTATCCTATT TACATCGAGA AACAAAAAAA CAATTGAAAC GAAAATGAAA 89281 .......... .......... .......... .......... .......... .......... 254 GCATAACATC TTGGTGTTCT GGTTTCATCC GTTTTATGTT TCTAAGCTTG TTTTGGAAGT 89221 .......... .......... .......... .......... .......... .......... 254 GACATCAACC ATTTACTAGC TTCACCATTC ACCTACACAT CTTAGGCTTG AGTGATATTC 89161 .......... .......... .......... .......... .......... .......... 254 TAAAGGCTAT TTGTAAAAGA AACTGAGAGT CTAAAACATT ATATCAATTT ACTTTGGGGT 89101 .......... .......... .......... .......... .......... .......... 254 AAATTATGTA TGCCCGATTG ATGAAAGAAG TTCTTGTGAT GTAGAGTTGT TGCTATGTAT 89041 .......... .......... .......... .......... .......... .......... 254 TCTACTCCTA CCCCTTCAAA ACCAAAAGAA CAGAGTGTTA AAAGTAGTGA AATCAGGCAA 88981 .......... .......... .......... .......... .......... .......... 254 CCGAGGCTAG TAAACAACAG CTCGACTTAC AATCTTCTAT TATTCAGGTA CCTCAAATAC 88921 ||| |||||||||| .......... .......... .......... .......... .......GTA CCTCAAATAC 267 CTTGTCAAAA AGTACTTGAA GAAAAATAAC GTCAGGGATT GGCTTAGGGT GATTGCTTCC 88861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTCAAAA AGTACTTGAA GAAAAATAAC GTCAGGGATT GGCTTAGGGT GATTGCTTCC 327 AACAAGGACA GGAATGTTTA CGAATTGCGC TACTTCAACA TTGCTGAGAA TGAAGCAGAT 88801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGGACA GGAATGTTTA CGAATTGCGC TACTTCAACA TTGCTGAGAA TGAAGCAGAT 387 GAAGAAGATT AAACATGACC ATTCAATGTC TCTCTTTATC TTCTTTCTTT AGTCGGCCTT 88741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGATT AAACATGACC ATTCAATGTC TCTCTTTATC TTCTTTCTTT AGTCGGCCTT 447 CACTTTTTGA TCCTTGTATC ATCACTAATG AATCCTGTCT TCTCATTTCT AGATTTTGTT 88681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTTTGA TCCTTGTATC ATCACTAATG AATCCTGTCT TCTCATTTCT AGATTTTGTT 507 TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA TACTTTGGTT TGTCTATCTT 88621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA TACTTTGGTT TGTCTATCTT 567 TGGGGATAAT TATGAAAATG TCAATTTATC TGTATTGCCT TT 88579 |||||||||| |||||||||| |||||||||| |||||||||| || TGGGGATAAT TATGAAAATG TCAATTTATC TGTATTGCCT TT 609 hqPGS_C09HBa0278J12.1-_SGN-E353870+ (91680 91427,88933 88579) ******************************************************************************** EST sequence 392 +strand 604 n (File: SGN-E272167+) 1 CGTCGAATTT CTCCCTATTT GAATAGCAGC AGAAGAGAAA TCAAGAGCGT AAAGATGAGC 61 CGAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATCGACTGT 121 TCGAAGCCAG TGGAGGACAG TATTATGGAG ATTGCTTCTC TTGACAAGTT CCTCCAAGAG 181 AGAATTAAGG TTGGTGGAAA AGCTGGTGCA CTTGGAGATT CCGTTACTGT CACTCGTGAT 241 AAGAATAAAA TCACCGTCAC TTGCAACTCC ACTTTTTCCA AGAGGTACCT CAAATACCTT 301 GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT TGCTTCCAAC 361 AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA AGCAGATGAA 421 GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC CTTATATCAT 481 CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATT NTTTGTCCCC 541 TTATCAGTAA AAGAAAACGT TACTTTGATA CACTTTGGTT TGTTCATCTC TGGGGTCAAG 601 TTTT Predicted gene structure (within gDNA segment 93246 to 86474): Exon 1 91790 91775 ( 16 n); cDNA 1 16 ( 16 n); score: 0.812 Intron 1 91774 91700 ( 75 n); Pd: 0.998 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 91699 91427 ( 273 n); cDNA 17 284 ( 268 n); score: 0.912 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 3 88933 88612 ( 322 n); cDNA 285 599 ( 315 n); score: 0.812 MATCH C09HBa0278J12.1- SGN-E272167+ 0.858 611 1.012 C PGS_C09HBa0278J12.1-_SGN-E272167+ (91790 91775,91699 91427,88933 88612) Alignment (genomic DNA sequence = upper lines): CGTCGAGTTT CATCCTGTAC GTATGCTCCT ACTCTTTTCT TCTCTGTTTC TCTGACGATG 91731 |||||| ||| | ||| CGTCGAATTT CTCCCT.... .......... .......... .......... .......... 16 AGATTTGTTC TTGAGATCTG ATAATTTTTG CTTTTGAATG CCAGCAGAAG AGAAATACAG 91671 ||||||| ||||||||| |||||| || .......... .......... .......... .ATTTGAATA GCAGCAGAAG AGAAAT-CA- 43 AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG 91611 |||| ||||| |||||||| | |||||||| |||||||||| |||||||||| |||||||||| AGAGCGTAAA GATGAGCC-- G-AGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG 100 CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG ATTGCTTCTC 91551 |||||||||| ||| |||||| |||||||| | | || ||||| ||| |||||| |||||||||| CAAGCTTCGT CATCGACTGT TCGAAGCCAG TGGAGGACAG TATTATGGAG ATTGCTTCTC 160 TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT CTTGGGGATT 91491 |||||||||| ||| |||||| || ||||||| |||||||||| ||||||||| ||||| |||| TTGACAAGTT CCTCCAAGAG AGAATTAAGG TTGGTGGAAA AGCTGGTGCA CTTGGAGATT 220 CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA ACTTTTTCCA 91431 |||||||||| |||||||| ||||| || | |||||||||| |||||||| |||||||||| CCGTTACTGT CACTCGTGAT AAGAATAAAA TCACCGTCAC TTGCAACTCC ACTTTTTCCA 280 AGAGGTACTG ATTCTATTGC CTCATTTTCA GTTGTGTTTA TTTGAAAAAA AAATGATTCT 91371 |||| AGAG...... .......... .......... .......... .......... .......... 284 AGAAACTAAA CTCTACTCGT AGATCATAAA TTACTAGCTA CAGTCGACTT CTATTATAGT 91311 .......... .......... .......... .......... .......... .......... 284 TTGATAACGA TTACACTTAC CGATTGACAG TAACTTATCG CAGACCTATT CGATTATCCA 91251 .......... .......... .......... .......... .......... .......... 284 GTGAGTTCTG TGTAGTCATT CACACATTAA GCTTTGACTC AGTTGGTAAT CAGATAAATA 91191 .......... .......... .......... .......... .......... .......... 284 TATAGTTAAT TTGATAAGTT TTTGATATTT GAATGATTAA ATCCGACAAA CAGAACCATT 91131 .......... .......... .......... .......... .......... .......... 284 TTAGACCTAC TCCTGTAGTT AAATGAACTA TTTATTTAGG ACATTATTCT CTCTTTTTTG 91071 .......... .......... .......... .......... .......... .......... 284 GTGTTTATTT TTGTACTAGA GGACGGGCTT CGCACGTGTA TTTTATGTGA ATTTTTATAG 91011 .......... .......... .......... .......... .......... .......... 284 ATATGTTATA ATGATAAAAA TTTCATGGAA ATATATATGT AAATTAATGA ATAATATAAT 90951 .......... .......... .......... .......... .......... .......... 284 GTAACAATTA CAAAATAAGA ATAAAGACTT ACGCAATAAA ATATTCATAA AAAAACTAAA 90891 .......... .......... .......... .......... .......... .......... 284 TTAAGAAGTC TGATGGTGAT AAAAATAAAA GACAAAAAAA AGACAGATTT AAGAATGATC 90831 .......... .......... .......... .......... .......... .......... 284 CAATGTAAAC AATGTTCTTA TAAGACTGAT GTATGTATAG ATGAAAAAAA TAAGTACATA 90771 .......... .......... .......... .......... .......... .......... 284 ACTCTCTGAG TTCTTATCGA CTCCTTTCAT ATCCTATCAA AATTCAAGAG GTTTCTTCAT 90711 .......... .......... .......... .......... .......... .......... 284 CTACTTTAAC TATTGAATGA AAATGATAGC CTAGTAATCT TGGTAGGGGT TTCATGAGAT 90651 .......... .......... .......... .......... .......... .......... 284 TAAAAAAGTT GAATTTATAT AGATAGAATA GAAGGAATAT CAAAAGATAT ATTAAAGTTT 90591 .......... .......... .......... .......... .......... .......... 284 TAGTTTAAAT ATTTGGAGGT TATGAATATG AAAAGATGAG AGTTATGAAT ATTAAGAGTA 90531 .......... .......... .......... .......... .......... .......... 284 TAAAGTTGAA TAAGTAATTA ACAAATAATA ATAAATAAAT GAAGAATATG AAAAAAGAAG 90471 .......... .......... .......... .......... .......... .......... 284 TTAAAATTAG CAAACCATGT AGAAAGAACA ACTAAAGGTC TTATCACGTA ATTAAGCGTT 90411 .......... .......... .......... .......... .......... .......... 284 AATAAATTTA GATTTGTGAA GATAGAGTCA TTCTTTAATA ATAATCGAGA GGACATTATC 90351 .......... .......... .......... .......... .......... .......... 284 AACGTGTGTC TCCATTTTGC AGATTTGCAC CCTTTATATT ATTAAATTCG TTATTTATCA 90291 .......... .......... .......... .......... .......... .......... 284 TAAAGGATAA TACTTTATCC ACATAAATTA TATTATTCAT GAGAGGGGTT AAGGAAAAAG 90231 .......... .......... .......... .......... .......... .......... 284 TTATGAGAAA GAGGAAAAAT ATAGCAATTT AGTAAAGACT TTTTTTTTAA AAAAAAATTA 90171 .......... .......... .......... .......... .......... .......... 284 TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATTAATTGGA TATTTAATTA 90111 .......... .......... .......... .......... .......... .......... 284 GAAATCAATC TTTAGAAGTC TAAAAGTCAT TAACCTTTTA ATTAAATTTA TACAATCAAA 90051 .......... .......... .......... .......... .......... .......... 284 TATTTAAATA TTTTATAACA ATTTAATTTA TAGGAGGGGT AAAACTGTAA TTCAACTTTC 89991 .......... .......... .......... .......... .......... .......... 284 AACTTTTTTT GTTGATGCTT TTAGTAATAC ATGATGAATT AAGAGTGCCC AGACTTGAAG 89931 .......... .......... .......... .......... .......... .......... 284 CACAGTTCCA CTCTGGATTT ATCACTGTTT ATTTATCCAA AAACACTATC CTGTTTACAT 89871 .......... .......... .......... .......... .......... .......... 284 TGGGAAATCA GTAGAAACAG AATGACTAAA ACAGCAGTGT GTTCTAAGTT CGCATGATCG 89811 .......... .......... .......... .......... .......... .......... 284 TTGAAGCCTT TACTAAGCTT ATGGTACAGA TAGTCTATAT GCTTTATGAT TAAGCAACTA 89751 .......... .......... .......... .......... .......... .......... 284 TGTCTGGGTC CCAAATTAGA AGTCAGGGTT GGCTTTTATT GGAGTTTGAT TGTTTTTACA 89691 .......... .......... .......... .......... .......... .......... 284 ACTGACAGTC TGATATTAAC TTATTCATAG CTTCTTTTAT TTTGGCTCGT CTCTGCTTTA 89631 .......... .......... .......... .......... .......... .......... 284 CAAAGATTTC TTATTTGGAT AGTGCAACAG CAACAACACC ATACCCCATG TAACCCACAA 89571 .......... .......... .......... .......... .......... .......... 284 GTGAGGTCTG GGGAGGGTAG AGACTCTGCA CTATCCGTTA AGTGTAAGCA TACCTTCTTG 89511 .......... .......... .......... .......... .......... .......... 284 GATAGTGCAG ATATTCATAA ATCGCGCTCT TGCTAATGAT TTTAAAAGGA AGTCGTTTTA 89451 .......... .......... .......... .......... .......... .......... 284 ACTGTTTATT ATAGTTAGAG TTCCCTGCAC TGCAAGTCTA AAAGAAGCTC TCTTCTGTTC 89391 .......... .......... .......... .......... .......... .......... 284 AGGATTGTTA TACTGAACAT GATGAGTTTA TATCGTTCTG TTGTTTGTTT ATCTAATGCA 89331 .......... .......... .......... .......... .......... .......... 284 TTATCCTATT TACATCGAGA AACAAAAAAA CAATTGAAAC GAAAATGAAA GCATAACATC 89271 .......... .......... .......... .......... .......... .......... 284 TTGGTGTTCT GGTTTCATCC GTTTTATGTT TCTAAGCTTG TTTTGGAAGT GACATCAACC 89211 .......... .......... .......... .......... .......... .......... 284 ATTTACTAGC TTCACCATTC ACCTACACAT CTTAGGCTTG AGTGATATTC TAAAGGCTAT 89151 .......... .......... .......... .......... .......... .......... 284 TTGTAAAAGA AACTGAGAGT CTAAAACATT ATATCAATTT ACTTTGGGGT AAATTATGTA 89091 .......... .......... .......... .......... .......... .......... 284 TGCCCGATTG ATGAAAGAAG TTCTTGTGAT GTAGAGTTGT TGCTATGTAT TCTACTCCTA 89031 .......... .......... .......... .......... .......... .......... 284 CCCCTTCAAA ACCAAAAGAA CAGAGTGTTA AAAGTAGTGA AATCAGGCAA CCGAGGCTAG 88971 .......... .......... .......... .......... .......... .......... 284 TAAACAACAG CTCGACTTAC AATCTTCTAT TATTCAGGTA CCTCAAATAC CTTGTCAAAA 88911 ||| |||||||||| |||||||||| .......... .......... .......... .......GTA CCTCAAATAC CTTGTCAAAA 307 AGTACTTGAA GAAAAATAAC GTCAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA 88851 |||||||||| |||||| ||| || ||||||| |||||||||| |||||||||| |||||||||| AGTACTTGAA GAAAAACAAC GTTAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA 367 GGAATGTTTA CGAATTGCGC TACTTCAACA TTGCTGAGAA TGAAGCAGAT GAAGAAGATT 88791 |||||||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| GGAATGTTTA TGAGTTGCGC TACTTCAACA TTGCCGAGAA TGAAGCAGAT GAAGAAGATT 427 AAACATGACC ATTCAATGTC TCTCTTTATC TTCTTTCTTT AGTCGGCCTT CACTTTTTGA 88731 ||||||| | | |||||||| || |||||| ||| || ||| | |||| | | | | AAACATGTCT AGTCAATGTC CCT-TTTATC TTC-TTATTT --TGAACCTT -A---TATCA 479 TCCTTGTATC A-TCACTAAT GAATCCTGTC TTCTCATTTC TAGATTTTGT TTTTGCAGTT 88672 | | ||| | | | | |||| || | | || |||||||||| ||||| | || || T-C-TGTTTG AGTTATTAAT GAGCCGTATC TTCTCATTTC CAGATTATTG ATTNTTTGTC 537 TGCTTATCAG TAAAAGAAAA CATTACATCG AT--ACTTTG GTTTGTCTAT CTTTGGGGAT 88614 |||||||| |||||||||| | |||| | | || |||||| |||||| || || ||||| CCCTTATCAG TAAAAGAAAA CGTTACTTTG ATACACTTTG GTTTGTTCAT CTCTGGGGTC 597 AA 88612 || AA 599 hqPGS_C09HBa0278J12.1-_SGN-E272167+ (91790 91775,91699 91427,88933 88612) ******************************************************************************** EST sequence 212 +strand 542 n (File: SGN-E551726+) 1 TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT GGTGGAAAAG CTGGTGCACT 61 TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC 121 TTTTTCCAAG AGGTACCTCA AATACCTTGT CAAAAAGTAC TTGAAGAAAA ACAACGTTAG 181 GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTATGAGT TGCGCTACTT 241 CAACATTGCC GAGAATGAAG CAGATGAAGA AGATTAAACA TGTCTAGTCA ATGTCCCTTT 301 TATCTTCTTA TTTTGAACCT TATATCATCT GTTTGAGTTA TTAATGAGCC GTATCTTCTC 361 ATTTCCAGAT TATTGATTTT TTGTCCCCTT ATCAGTAAAA GAAAACGTTA CTTTGATACA 421 CTTTGGTTTG TTCATCTCTG GGGTCAAGTT TTTGCAAGGC ATCAATTTCT CTGTATTGCC 481 TTTTCCCTCT TGATGATCAC ATGTAATTTA TAGAGTTTAT CTTTTGTTGT TAAAAAAAAA 541 AA Predicted gene structure (within gDNA segment 91726 to 84974): Exon 1 91558 91427 ( 132 n); cDNA 1 132 ( 132 n); score: 0.924 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88616 ( 318 n); cDNA 133 443 ( 311 n); score: 0.821 PPA cDNA 532 542 MATCH C09HBa0278J12.1- SGN-E551726+ 0.851 450 0.830 C PGS_C09HBa0278J12.1-_SGN-E551726+ (91558 91427,88933 88616) Alignment (genomic DNA sequence = upper lines): TGCTTCTCTT GACAAGTTCC TTCAAGAGAG GATTAAGGTT GGTGGAAAAG CTGGTGCTCT 91499 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| ||||||| || TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT GGTGGAAAAG CTGGTGCACT 60 TGGGGATTCC GTTACTGTTA CTCGTGACAA GAACAAGATC ACCGTCACCT GCAACTCAAC 91439 ||| |||||| |||||||| | ||||||| || ||| || ||| |||||||| | ||||||| || TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC 120 TTTTTCCAAG AGGTACTGAT TCTATTGCCT CATTTTCAGT TGTGTTTATT TGAAAAAAAA 91379 |||||||||| || TTTTTCCAAG AG........ .......... .......... .......... .......... 132 ATGATTCTAG AAACTAAACT CTACTCGTAG ATCATAAATT ACTAGCTACA GTCGACTTCT 91319 .......... .......... .......... .......... .......... .......... 132 ATTATAGTTT GATAACGATT ACACTTACCG ATTGACAGTA ACTTATCGCA GACCTATTCG 91259 .......... .......... .......... .......... .......... .......... 132 ATTATCCAGT GAGTTCTGTG TAGTCATTCA CACATTAAGC TTTGACTCAG TTGGTAATCA 91199 .......... .......... .......... .......... .......... .......... 132 GATAAATATA TAGTTAATTT GATAAGTTTT TGATATTTGA ATGATTAAAT CCGACAAACA 91139 .......... .......... .......... .......... .......... .......... 132 GAACCATTTT AGACCTACTC CTGTAGTTAA ATGAACTATT TATTTAGGAC ATTATTCTCT 91079 .......... .......... .......... .......... .......... .......... 132 CTTTTTTGGT GTTTATTTTT GTACTAGAGG ACGGGCTTCG CACGTGTATT TTATGTGAAT 91019 .......... .......... .......... .......... .......... .......... 132 TTTTATAGAT ATGTTATAAT GATAAAAATT TCATGGAAAT ATATATGTAA ATTAATGAAT 90959 .......... .......... .......... .......... .......... .......... 132 AATATAATGT AACAATTACA AAATAAGAAT AAAGACTTAC GCAATAAAAT ATTCATAAAA 90899 .......... .......... .......... .......... .......... .......... 132 AAACTAAATT AAGAAGTCTG ATGGTGATAA AAATAAAAGA CAAAAAAAAG ACAGATTTAA 90839 .......... .......... .......... .......... .......... .......... 132 GAATGATCCA ATGTAAACAA TGTTCTTATA AGACTGATGT ATGTATAGAT GAAAAAAATA 90779 .......... .......... .......... .......... .......... .......... 132 AGTACATAAC TCTCTGAGTT CTTATCGACT CCTTTCATAT CCTATCAAAA TTCAAGAGGT 90719 .......... .......... .......... .......... .......... .......... 132 TTCTTCATCT ACTTTAACTA TTGAATGAAA ATGATAGCCT AGTAATCTTG GTAGGGGTTT 90659 .......... .......... .......... .......... .......... .......... 132 CATGAGATTA AAAAAGTTGA ATTTATATAG ATAGAATAGA AGGAATATCA AAAGATATAT 90599 .......... .......... .......... .......... .......... .......... 132 TAAAGTTTTA GTTTAAATAT TTGGAGGTTA TGAATATGAA AAGATGAGAG TTATGAATAT 90539 .......... .......... .......... .......... .......... .......... 132 TAAGAGTATA AAGTTGAATA AGTAATTAAC AAATAATAAT AAATAAATGA AGAATATGAA 90479 .......... .......... .......... .......... .......... .......... 132 AAAAGAAGTT AAAATTAGCA AACCATGTAG AAAGAACAAC TAAAGGTCTT ATCACGTAAT 90419 .......... .......... .......... .......... .......... .......... 132 TAAGCGTTAA TAAATTTAGA TTTGTGAAGA TAGAGTCATT CTTTAATAAT AATCGAGAGG 90359 .......... .......... .......... .......... .......... .......... 132 ACATTATCAA CGTGTGTCTC CATTTTGCAG ATTTGCACCC TTTATATTAT TAAATTCGTT 90299 .......... .......... .......... .......... .......... .......... 132 ATTTATCATA AAGGATAATA CTTTATCCAC ATAAATTATA TTATTCATGA GAGGGGTTAA 90239 .......... .......... .......... .......... .......... .......... 132 GGAAAAAGTT ATGAGAAAGA GGAAAAATAT AGCAATTTAG TAAAGACTTT TTTTTTAAAA 90179 .......... .......... .......... .......... .......... .......... 132 AAAAATTATA ATTATTATAT ACATATAGAT TATAGATGAT AAATATTAAT TAATTGGATA 90119 .......... .......... .......... .......... .......... .......... 132 TTTAATTAGA AATCAATCTT TAGAAGTCTA AAAGTCATTA ACCTTTTAAT TAAATTTATA 90059 .......... .......... .......... .......... .......... .......... 132 CAATCAAATA TTTAAATATT TTATAACAAT TTAATTTATA GGAGGGGTAA AACTGTAATT 89999 .......... .......... .......... .......... .......... .......... 132 CAACTTTCAA CTTTTTTTGT TGATGCTTTT AGTAATACAT GATGAATTAA GAGTGCCCAG 89939 .......... .......... .......... .......... .......... .......... 132 ACTTGAAGCA CAGTTCCACT CTGGATTTAT CACTGTTTAT TTATCCAAAA ACACTATCCT 89879 .......... .......... .......... .......... .......... .......... 132 GTTTACATTG GGAAATCAGT AGAAACAGAA TGACTAAAAC AGCAGTGTGT TCTAAGTTCG 89819 .......... .......... .......... .......... .......... .......... 132 CATGATCGTT GAAGCCTTTA CTAAGCTTAT GGTACAGATA GTCTATATGC TTTATGATTA 89759 .......... .......... .......... .......... .......... .......... 132 AGCAACTATG TCTGGGTCCC AAATTAGAAG TCAGGGTTGG CTTTTATTGG AGTTTGATTG 89699 .......... .......... .......... .......... .......... .......... 132 TTTTTACAAC TGACAGTCTG ATATTAACTT ATTCATAGCT TCTTTTATTT TGGCTCGTCT 89639 .......... .......... .......... .......... .......... .......... 132 CTGCTTTACA AAGATTTCTT ATTTGGATAG TGCAACAGCA ACAACACCAT ACCCCATGTA 89579 .......... .......... .......... .......... .......... .......... 132 ACCCACAAGT GAGGTCTGGG GAGGGTAGAG ACTCTGCACT ATCCGTTAAG TGTAAGCATA 89519 .......... .......... .......... .......... .......... .......... 132 CCTTCTTGGA TAGTGCAGAT ATTCATAAAT CGCGCTCTTG CTAATGATTT TAAAAGGAAG 89459 .......... .......... .......... .......... .......... .......... 132 TCGTTTTAAC TGTTTATTAT AGTTAGAGTT CCCTGCACTG CAAGTCTAAA AGAAGCTCTC 89399 .......... .......... .......... .......... .......... .......... 132 TTCTGTTCAG GATTGTTATA CTGAACATGA TGAGTTTATA TCGTTCTGTT GTTTGTTTAT 89339 .......... .......... .......... .......... .......... .......... 132 CTAATGCATT ATCCTATTTA CATCGAGAAA CAAAAAAACA ATTGAAACGA AAATGAAAGC 89279 .......... .......... .......... .......... .......... .......... 132 ATAACATCTT GGTGTTCTGG TTTCATCCGT TTTATGTTTC TAAGCTTGTT TTGGAAGTGA 89219 .......... .......... .......... .......... .......... .......... 132 CATCAACCAT TTACTAGCTT CACCATTCAC CTACACATCT TAGGCTTGAG TGATATTCTA 89159 .......... .......... .......... .......... .......... .......... 132 AAGGCTATTT GTAAAAGAAA CTGAGAGTCT AAAACATTAT ATCAATTTAC TTTGGGGTAA 89099 .......... .......... .......... .......... .......... .......... 132 ATTATGTATG CCCGATTGAT GAAAGAAGTT CTTGTGATGT AGAGTTGTTG CTATGTATTC 89039 .......... .......... .......... .......... .......... .......... 132 TACTCCTACC CCTTCAAAAC CAAAAGAACA GAGTGTTAAA AGTAGTGAAA TCAGGCAACC 88979 .......... .......... .......... .......... .......... .......... 132 GAGGCTAGTA AACAACAGCT CGACTTACAA TCTTCTATTA TTCAGGTACC TCAAATACCT 88919 ||||| |||||||||| .......... .......... .......... .......... .....GTACC TCAAATACCT 147 TGTCAAAAAG TACTTGAAGA AAAATAACGT CAGGGATTGG CTTAGGGTGA TTGCTTCCAA 88859 |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG CTTAGGGTGA TTGCTTCCAA 207 CAAGGACAGG AATGTTTACG AATTGCGCTA CTTCAACATT GCTGAGAATG AAGCAGATGA 88799 |||||||||| |||||||| | | |||||||| |||||||||| || ||||||| |||||||||| CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT GCCGAGAATG AAGCAGATGA 267 AGAAGATTAA ACATGACCAT TCAATGTCTC TCTTTATCTT CTTTCTTTAG TCGGCCTTCA 88739 |||||||||| ||||| | | |||||||| | | |||||||| | || ||| | |||| | AGAAGATTAA ACATGTCTAG TCAATGTCCC T-TTTATCTT C-TTATTT-- TGAACCTT-A 322 CTTTTTGATC CTTGTATCA- TCACTAATGA ATCCTGTCTT CTCATTTCTA GATT-TTGTT 88681 | | || | ||| | | | | |||||| | | |||| |||||||| | |||| ||| | ---TATCAT- C-TGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA GATTATTGAT 377 TTTGCAGTTT GCTTATCAGT AAAAGAAAAC ATTACATCGA T--ACTTTGG TTTGTCTATC 88623 ||| || ||||||||| |||||||||| |||| | || | ||||||| ||||| ||| TTT-TTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA TACACTTTGG TTTGTTCATC 436 TTTGGGG 88616 | ||||| TCTGGGG 443 hqPGS_C09HBa0278J12.1-_SGN-E551726+ (91558 91427,88933 88616) ******************************************************************************** EST sequence 195 +strand 573 n (File: SGN-E306494+) 1 TCGAGTTTCA TCCTCAGAAG AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG 61 CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG 121 TAGAAGACAG TATCATGGAG ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG 181 TTGGTGGAAA AGCTGGTGCT CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA 241 TCACCGTCAC CTGCAACTCA ACTTTTTCCA AGAGGTACCT CAAATACCTT GTCAAAAAGT 301 ACTTGAAGAA AAATAACGTC AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA 361 ATGTTTACGA ATTGCGCTAC TTCAACATTG CTGAGAATGA AGCAGATGAA GAAGATTAAA 421 CATGACCATT CAATGTCTCT CTTTATCTTC TTTCTTTAGT CGGCCTTCAC TTTTTGATCC 481 TTGTATCATC ACTAATGAAT CCTGTCTTCT CATTTCTAGA TTTTGTTTTT GCAGTTTGCT 541 TATCAGTAAA AGAAAACATT ACATCGATAC TTT Predicted gene structure (within gDNA segment 92426 to 88025): Exon 1 91788 91775 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 91774 91687 ( 88 n); Pd: 0.998 (s: 0), Pa: 0.918 (s: 1.00) Exon 2 91686 91427 ( 260 n); cDNA 15 274 ( 260 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 88933 88635 ( 299 n); cDNA 275 573 ( 299 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E306494+ 1.000 573 1.000 C PGS_C09HBa0278J12.1-_SGN-E306494+ (91788 91775,91686 91427,88933 88635) Alignment (genomic DNA sequence = upper lines): TCGAGTTTCA TCCTGTACGT ATGCTCCTAC TCTTTTCTTC TCTGTTTCTC TGACGATGAG 91729 |||||||||| |||| TCGAGTTTCA TCCT...... .......... .......... .......... .......... 14 ATTTGTTCTT GAGATCTGAT AATTTTTGCT TTTGAATGCC AGCAGAAGAG AAATACAGAG 91669 |||||||| |||||||||| .......... .......... .......... .......... ..CAGAAGAG AAATACAGAG 32 AGTGTAAAGA TGAGCCGAGC AGCAGCAGCA GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA 91609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTAAAGA TGAGCCGAGC AGCAGCAGCA GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA 92 AGCTTCGTCA TTGACTGTTC GAAGCCGGTA GAAGACAGTA TCATGGAGAT TGCTTCTCTT 91549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCGTCA TTGACTGTTC GAAGCCGGTA GAAGACAGTA TCATGGAGAT TGCTTCTCTT 152 GACAAGTTCC TTCAAGAGAG GATTAAGGTT GGTGGAAAAG CTGGTGCTCT TGGGGATTCC 91489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTTCC TTCAAGAGAG GATTAAGGTT GGTGGAAAAG CTGGTGCTCT TGGGGATTCC 212 GTTACTGTTA CTCGTGACAA GAACAAGATC ACCGTCACCT GCAACTCAAC TTTTTCCAAG 91429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACTGTTA CTCGTGACAA GAACAAGATC ACCGTCACCT GCAACTCAAC TTTTTCCAAG 272 AGGTACTGAT TCTATTGCCT CATTTTCAGT TGTGTTTATT TGAAAAAAAA ATGATTCTAG 91369 || AG........ .......... .......... .......... .......... .......... 274 AAACTAAACT CTACTCGTAG ATCATAAATT ACTAGCTACA GTCGACTTCT ATTATAGTTT 91309 .......... .......... .......... .......... .......... .......... 274 GATAACGATT ACACTTACCG ATTGACAGTA ACTTATCGCA GACCTATTCG ATTATCCAGT 91249 .......... .......... .......... .......... .......... .......... 274 GAGTTCTGTG TAGTCATTCA CACATTAAGC TTTGACTCAG TTGGTAATCA GATAAATATA 91189 .......... .......... .......... .......... .......... .......... 274 TAGTTAATTT GATAAGTTTT TGATATTTGA ATGATTAAAT CCGACAAACA GAACCATTTT 91129 .......... .......... .......... .......... .......... .......... 274 AGACCTACTC CTGTAGTTAA ATGAACTATT TATTTAGGAC ATTATTCTCT CTTTTTTGGT 91069 .......... .......... .......... .......... .......... .......... 274 GTTTATTTTT GTACTAGAGG ACGGGCTTCG CACGTGTATT TTATGTGAAT TTTTATAGAT 91009 .......... .......... .......... .......... .......... .......... 274 ATGTTATAAT GATAAAAATT TCATGGAAAT ATATATGTAA ATTAATGAAT AATATAATGT 90949 .......... .......... .......... .......... .......... .......... 274 AACAATTACA AAATAAGAAT AAAGACTTAC GCAATAAAAT ATTCATAAAA AAACTAAATT 90889 .......... .......... .......... .......... .......... .......... 274 AAGAAGTCTG ATGGTGATAA AAATAAAAGA CAAAAAAAAG ACAGATTTAA GAATGATCCA 90829 .......... .......... .......... .......... .......... .......... 274 ATGTAAACAA TGTTCTTATA AGACTGATGT ATGTATAGAT GAAAAAAATA AGTACATAAC 90769 .......... .......... .......... .......... .......... .......... 274 TCTCTGAGTT CTTATCGACT CCTTTCATAT CCTATCAAAA TTCAAGAGGT TTCTTCATCT 90709 .......... .......... .......... .......... .......... .......... 274 ACTTTAACTA TTGAATGAAA ATGATAGCCT AGTAATCTTG GTAGGGGTTT CATGAGATTA 90649 .......... .......... .......... .......... .......... .......... 274 AAAAAGTTGA ATTTATATAG ATAGAATAGA AGGAATATCA AAAGATATAT TAAAGTTTTA 90589 .......... .......... .......... .......... .......... .......... 274 GTTTAAATAT TTGGAGGTTA TGAATATGAA AAGATGAGAG TTATGAATAT TAAGAGTATA 90529 .......... .......... .......... .......... .......... .......... 274 AAGTTGAATA AGTAATTAAC AAATAATAAT AAATAAATGA AGAATATGAA AAAAGAAGTT 90469 .......... .......... .......... .......... .......... .......... 274 AAAATTAGCA AACCATGTAG AAAGAACAAC TAAAGGTCTT ATCACGTAAT TAAGCGTTAA 90409 .......... .......... .......... .......... .......... .......... 274 TAAATTTAGA TTTGTGAAGA TAGAGTCATT CTTTAATAAT AATCGAGAGG ACATTATCAA 90349 .......... .......... .......... .......... .......... .......... 274 CGTGTGTCTC CATTTTGCAG ATTTGCACCC TTTATATTAT TAAATTCGTT ATTTATCATA 90289 .......... .......... .......... .......... .......... .......... 274 AAGGATAATA CTTTATCCAC ATAAATTATA TTATTCATGA GAGGGGTTAA GGAAAAAGTT 90229 .......... .......... .......... .......... .......... .......... 274 ATGAGAAAGA GGAAAAATAT AGCAATTTAG TAAAGACTTT TTTTTTAAAA AAAAATTATA 90169 .......... .......... .......... .......... .......... .......... 274 ATTATTATAT ACATATAGAT TATAGATGAT AAATATTAAT TAATTGGATA TTTAATTAGA 90109 .......... .......... .......... .......... .......... .......... 274 AATCAATCTT TAGAAGTCTA AAAGTCATTA ACCTTTTAAT TAAATTTATA CAATCAAATA 90049 .......... .......... .......... .......... .......... .......... 274 TTTAAATATT TTATAACAAT TTAATTTATA GGAGGGGTAA AACTGTAATT CAACTTTCAA 89989 .......... .......... .......... .......... .......... .......... 274 CTTTTTTTGT TGATGCTTTT AGTAATACAT GATGAATTAA GAGTGCCCAG ACTTGAAGCA 89929 .......... .......... .......... .......... .......... .......... 274 CAGTTCCACT CTGGATTTAT CACTGTTTAT TTATCCAAAA ACACTATCCT GTTTACATTG 89869 .......... .......... .......... .......... .......... .......... 274 GGAAATCAGT AGAAACAGAA TGACTAAAAC AGCAGTGTGT TCTAAGTTCG CATGATCGTT 89809 .......... .......... .......... .......... .......... .......... 274 GAAGCCTTTA CTAAGCTTAT GGTACAGATA GTCTATATGC TTTATGATTA AGCAACTATG 89749 .......... .......... .......... .......... .......... .......... 274 TCTGGGTCCC AAATTAGAAG TCAGGGTTGG CTTTTATTGG AGTTTGATTG TTTTTACAAC 89689 .......... .......... .......... .......... .......... .......... 274 TGACAGTCTG ATATTAACTT ATTCATAGCT TCTTTTATTT TGGCTCGTCT CTGCTTTACA 89629 .......... .......... .......... .......... .......... .......... 274 AAGATTTCTT ATTTGGATAG TGCAACAGCA ACAACACCAT ACCCCATGTA ACCCACAAGT 89569 .......... .......... .......... .......... .......... .......... 274 GAGGTCTGGG GAGGGTAGAG ACTCTGCACT ATCCGTTAAG TGTAAGCATA CCTTCTTGGA 89509 .......... .......... .......... .......... .......... .......... 274 TAGTGCAGAT ATTCATAAAT CGCGCTCTTG CTAATGATTT TAAAAGGAAG TCGTTTTAAC 89449 .......... .......... .......... .......... .......... .......... 274 TGTTTATTAT AGTTAGAGTT CCCTGCACTG CAAGTCTAAA AGAAGCTCTC TTCTGTTCAG 89389 .......... .......... .......... .......... .......... .......... 274 GATTGTTATA CTGAACATGA TGAGTTTATA TCGTTCTGTT GTTTGTTTAT CTAATGCATT 89329 .......... .......... .......... .......... .......... .......... 274 ATCCTATTTA CATCGAGAAA CAAAAAAACA ATTGAAACGA AAATGAAAGC ATAACATCTT 89269 .......... .......... .......... .......... .......... .......... 274 GGTGTTCTGG TTTCATCCGT TTTATGTTTC TAAGCTTGTT TTGGAAGTGA CATCAACCAT 89209 .......... .......... .......... .......... .......... .......... 274 TTACTAGCTT CACCATTCAC CTACACATCT TAGGCTTGAG TGATATTCTA AAGGCTATTT 89149 .......... .......... .......... .......... .......... .......... 274 GTAAAAGAAA CTGAGAGTCT AAAACATTAT ATCAATTTAC TTTGGGGTAA ATTATGTATG 89089 .......... .......... .......... .......... .......... .......... 274 CCCGATTGAT GAAAGAAGTT CTTGTGATGT AGAGTTGTTG CTATGTATTC TACTCCTACC 89029 .......... .......... .......... .......... .......... .......... 274 CCTTCAAAAC CAAAAGAACA GAGTGTTAAA AGTAGTGAAA TCAGGCAACC GAGGCTAGTA 88969 .......... .......... .......... .......... .......... .......... 274 AACAACAGCT CGACTTACAA TCTTCTATTA TTCAGGTACC TCAAATACCT TGTCAAAAAG 88909 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTACC TCAAATACCT TGTCAAAAAG 299 TACTTGAAGA AAAATAACGT CAGGGATTGG CTTAGGGTGA TTGCTTCCAA CAAGGACAGG 88849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGAAGA AAAATAACGT CAGGGATTGG CTTAGGGTGA TTGCTTCCAA CAAGGACAGG 359 AATGTTTACG AATTGCGCTA CTTCAACATT GCTGAGAATG AAGCAGATGA AGAAGATTAA 88789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTTACG AATTGCGCTA CTTCAACATT GCTGAGAATG AAGCAGATGA AGAAGATTAA 419 ACATGACCAT TCAATGTCTC TCTTTATCTT CTTTCTTTAG TCGGCCTTCA CTTTTTGATC 88729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGACCAT TCAATGTCTC TCTTTATCTT CTTTCTTTAG TCGGCCTTCA CTTTTTGATC 479 CTTGTATCAT CACTAATGAA TCCTGTCTTC TCATTTCTAG ATTTTGTTTT TGCAGTTTGC 88669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTATCAT CACTAATGAA TCCTGTCTTC TCATTTCTAG ATTTTGTTTT TGCAGTTTGC 539 TTATCAGTAA AAGAAAACAT TACATCGATA CTTT 88635 |||||||||| |||||||||| |||||||||| |||| TTATCAGTAA AAGAAAACAT TACATCGATA CTTT 573 hqPGS_C09HBa0278J12.1-_SGN-E306494+ (91788 91775,91686 91427,88933 88635) ******************************************************************************** EST sequence 289 +strand 585 n (File: SGN-E287412+) 1 TGGAACGTAA CCTAAAATAG GGCCAAAAGT GCAAATTAGA GAGAGGTGCC ACATTTAGCA 61 AGTAGGAACG AAGGAAAACC CTAATTTAAC AGAGTCACCA CTTTCCATAC ACTCACACTA 121 AGCCGGGGAC GTCGAGTTTC ATCCTAAGAG AAATACAGAG AGTGTAAAGA TGAGCCGAGC 181 AGCAGCAGCA GCAGTGAAAG GCGGGAAGAA GAAAGGGGCA AGCTTCGTCA TTGACTGTTC 241 GAAGCCGGTA GAAGACAGTA TCATGGAGAT TGCTTCTCTT GACAAGTTCC TTCAAGAGAG 301 GATTAAGGTT GGTGGAAAAG CTGGTGCTCT TGGGGATTCC GTTACTGTTA CTCGTGACAA 361 GAACAAGATC ACCGTCACCT GCAACTCAAC TTTTTCCAAG AGGTACCTCA AATACCTTGT 421 CAAAAAGTAC TTGAAGAAAA ATAACGTCAG GGATTGGCTT ANGGTGATTG CTTCCAACAA 481 GGACAGGAAT GTTTACGAAT TGCGCTACTT CAACATTGCT GAGAATGAAG CAGATGAAGA 541 AGATTAAACA TGACCATTCA ATGTCTCTCT TTATCTTCTT TCTTT Predicted gene structure (within gDNA segment 92518 to 88141): Exon 1 91918 91775 ( 144 n); cDNA 1 145 ( 145 n); score: 0.969 Intron 1 91774 91684 ( 91 n); Pd: 0.998 (s: 0.91), Pa: 0.809 (s: 1.00) Exon 2 91683 91427 ( 257 n); cDNA 146 402 ( 257 n); score: 0.992 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 88933 88751 ( 183 n); cDNA 403 585 ( 183 n); score: 0.995 MATCH C09HBa0278J12.1- SGN-E287412+ 0.987 584 0.998 C PGS_C09HBa0278J12.1-_SGN-E287412+ (91918 91775,91683 91427,88933 88751) Alignment (genomic DNA sequence = upper lines): TGGAACGTAA CCTAAAATAG GGCCAAAAGT GCAAATTAGA GAGAGGTGCC ACATTTAGCA 91859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAACGTAA CCTAAAATAG GGCCAAAAGT GCAAATTAGA GAGAGGTGCC ACATTTAGCA 60 AGTAGGAACG AAGGAAAACC CTAATTTAAC AGAGTCACCA C-TTCCATAC ACTCACACTA 91800 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGTAGGAACG AAGGAAAACC CTAATTTAAC AGAGTCACCA CTTTCCATAC ACTCACACTA 120 GGCCGTGGAC GTCGAGTTTC ATCCTGTACG TATGCTCCTA CTCTTTTCTT CTCTGTTTCT 91740 |||| |||| |||||||||| ||||| AGCCGGGGAC GTCGAGTTTC ATCCT..... .......... .......... .......... 145 CTGACGATGA GATTTGTTCT TGAGATCTGA TAATTTTTGC TTTTGAATGC CAGCAGAAGA 91680 |||| .......... .......... .......... .......... .......... ......AAGA 149 GAAATACAGA GAGTGTAAAG ATGAGCCGAG CAGCAGCAGC AGCAGTGAAG GGCGGGAAGA 91620 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GAAATACAGA GAGTGTAAAG ATGAGCCGAG CAGCAGCAGC AGCAGTGAAA GGCGGGAAGA 209 AGAAGGGGGC AAGCTTCGTC ATTGACTGTT CGAAGCCGGT AGAAGACAGT ATCATGGAGA 91560 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGGGGC AAGCTTCGTC ATTGACTGTT CGAAGCCGGT AGAAGACAGT ATCATGGAGA 269 TTGCTTCTCT TGACAAGTTC CTTCAAGAGA GGATTAAGGT TGGTGGAAAA GCTGGTGCTC 91500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTCTCT TGACAAGTTC CTTCAAGAGA GGATTAAGGT TGGTGGAAAA GCTGGTGCTC 329 TTGGGGATTC CGTTACTGTT ACTCGTGACA AGAACAAGAT CACCGTCACC TGCAACTCAA 91440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGGATTC CGTTACTGTT ACTCGTGACA AGAACAAGAT CACCGTCACC TGCAACTCAA 389 CTTTTTCCAA GAGGTACTGA TTCTATTGCC TCATTTTCAG TTGTGTTTAT TTGAAAAAAA 91380 |||||||||| ||| CTTTTTCCAA GAG....... .......... .......... .......... .......... 402 AATGATTCTA GAAACTAAAC TCTACTCGTA GATCATAAAT TACTAGCTAC AGTCGACTTC 91320 .......... .......... .......... .......... .......... .......... 402 TATTATAGTT TGATAACGAT TACACTTACC GATTGACAGT AACTTATCGC AGACCTATTC 91260 .......... .......... .......... .......... .......... .......... 402 GATTATCCAG TGAGTTCTGT GTAGTCATTC ACACATTAAG CTTTGACTCA GTTGGTAATC 91200 .......... .......... .......... .......... .......... .......... 402 AGATAAATAT ATAGTTAATT TGATAAGTTT TTGATATTTG AATGATTAAA TCCGACAAAC 91140 .......... .......... .......... .......... .......... .......... 402 AGAACCATTT TAGACCTACT CCTGTAGTTA AATGAACTAT TTATTTAGGA CATTATTCTC 91080 .......... .......... .......... .......... .......... .......... 402 TCTTTTTTGG TGTTTATTTT TGTACTAGAG GACGGGCTTC GCACGTGTAT TTTATGTGAA 91020 .......... .......... .......... .......... .......... .......... 402 TTTTTATAGA TATGTTATAA TGATAAAAAT TTCATGGAAA TATATATGTA AATTAATGAA 90960 .......... .......... .......... .......... .......... .......... 402 TAATATAATG TAACAATTAC AAAATAAGAA TAAAGACTTA CGCAATAAAA TATTCATAAA 90900 .......... .......... .......... .......... .......... .......... 402 AAAACTAAAT TAAGAAGTCT GATGGTGATA AAAATAAAAG ACAAAAAAAA GACAGATTTA 90840 .......... .......... .......... .......... .......... .......... 402 AGAATGATCC AATGTAAACA ATGTTCTTAT AAGACTGATG TATGTATAGA TGAAAAAAAT 90780 .......... .......... .......... .......... .......... .......... 402 AAGTACATAA CTCTCTGAGT TCTTATCGAC TCCTTTCATA TCCTATCAAA ATTCAAGAGG 90720 .......... .......... .......... .......... .......... .......... 402 TTTCTTCATC TACTTTAACT ATTGAATGAA AATGATAGCC TAGTAATCTT GGTAGGGGTT 90660 .......... .......... .......... .......... .......... .......... 402 TCATGAGATT AAAAAAGTTG AATTTATATA GATAGAATAG AAGGAATATC AAAAGATATA 90600 .......... .......... .......... .......... .......... .......... 402 TTAAAGTTTT AGTTTAAATA TTTGGAGGTT ATGAATATGA AAAGATGAGA GTTATGAATA 90540 .......... .......... .......... .......... .......... .......... 402 TTAAGAGTAT AAAGTTGAAT AAGTAATTAA CAAATAATAA TAAATAAATG AAGAATATGA 90480 .......... .......... .......... .......... .......... .......... 402 AAAAAGAAGT TAAAATTAGC AAACCATGTA GAAAGAACAA CTAAAGGTCT TATCACGTAA 90420 .......... .......... .......... .......... .......... .......... 402 TTAAGCGTTA ATAAATTTAG ATTTGTGAAG ATAGAGTCAT TCTTTAATAA TAATCGAGAG 90360 .......... .......... .......... .......... .......... .......... 402 GACATTATCA ACGTGTGTCT CCATTTTGCA GATTTGCACC CTTTATATTA TTAAATTCGT 90300 .......... .......... .......... .......... .......... .......... 402 TATTTATCAT AAAGGATAAT ACTTTATCCA CATAAATTAT ATTATTCATG AGAGGGGTTA 90240 .......... .......... .......... .......... .......... .......... 402 AGGAAAAAGT TATGAGAAAG AGGAAAAATA TAGCAATTTA GTAAAGACTT TTTTTTTAAA 90180 .......... .......... .......... .......... .......... .......... 402 AAAAAATTAT AATTATTATA TACATATAGA TTATAGATGA TAAATATTAA TTAATTGGAT 90120 .......... .......... .......... .......... .......... .......... 402 ATTTAATTAG AAATCAATCT TTAGAAGTCT AAAAGTCATT AACCTTTTAA TTAAATTTAT 90060 .......... .......... .......... .......... .......... .......... 402 ACAATCAAAT ATTTAAATAT TTTATAACAA TTTAATTTAT AGGAGGGGTA AAACTGTAAT 90000 .......... .......... .......... .......... .......... .......... 402 TCAACTTTCA ACTTTTTTTG TTGATGCTTT TAGTAATACA TGATGAATTA AGAGTGCCCA 89940 .......... .......... .......... .......... .......... .......... 402 GACTTGAAGC ACAGTTCCAC TCTGGATTTA TCACTGTTTA TTTATCCAAA AACACTATCC 89880 .......... .......... .......... .......... .......... .......... 402 TGTTTACATT GGGAAATCAG TAGAAACAGA ATGACTAAAA CAGCAGTGTG TTCTAAGTTC 89820 .......... .......... .......... .......... .......... .......... 402 GCATGATCGT TGAAGCCTTT ACTAAGCTTA TGGTACAGAT AGTCTATATG CTTTATGATT 89760 .......... .......... .......... .......... .......... .......... 402 AAGCAACTAT GTCTGGGTCC CAAATTAGAA GTCAGGGTTG GCTTTTATTG GAGTTTGATT 89700 .......... .......... .......... .......... .......... .......... 402 GTTTTTACAA CTGACAGTCT GATATTAACT TATTCATAGC TTCTTTTATT TTGGCTCGTC 89640 .......... .......... .......... .......... .......... .......... 402 TCTGCTTTAC AAAGATTTCT TATTTGGATA GTGCAACAGC AACAACACCA TACCCCATGT 89580 .......... .......... .......... .......... .......... .......... 402 AACCCACAAG TGAGGTCTGG GGAGGGTAGA GACTCTGCAC TATCCGTTAA GTGTAAGCAT 89520 .......... .......... .......... .......... .......... .......... 402 ACCTTCTTGG ATAGTGCAGA TATTCATAAA TCGCGCTCTT GCTAATGATT TTAAAAGGAA 89460 .......... .......... .......... .......... .......... .......... 402 GTCGTTTTAA CTGTTTATTA TAGTTAGAGT TCCCTGCACT GCAAGTCTAA AAGAAGCTCT 89400 .......... .......... .......... .......... .......... .......... 402 CTTCTGTTCA GGATTGTTAT ACTGAACATG ATGAGTTTAT ATCGTTCTGT TGTTTGTTTA 89340 .......... .......... .......... .......... .......... .......... 402 TCTAATGCAT TATCCTATTT ACATCGAGAA ACAAAAAAAC AATTGAAACG AAAATGAAAG 89280 .......... .......... .......... .......... .......... .......... 402 CATAACATCT TGGTGTTCTG GTTTCATCCG TTTTATGTTT CTAAGCTTGT TTTGGAAGTG 89220 .......... .......... .......... .......... .......... .......... 402 ACATCAACCA TTTACTAGCT TCACCATTCA CCTACACATC TTAGGCTTGA GTGATATTCT 89160 .......... .......... .......... .......... .......... .......... 402 AAAGGCTATT TGTAAAAGAA ACTGAGAGTC TAAAACATTA TATCAATTTA CTTTGGGGTA 89100 .......... .......... .......... .......... .......... .......... 402 AATTATGTAT GCCCGATTGA TGAAAGAAGT TCTTGTGATG TAGAGTTGTT GCTATGTATT 89040 .......... .......... .......... .......... .......... .......... 402 CTACTCCTAC CCCTTCAAAA CCAAAAGAAC AGAGTGTTAA AAGTAGTGAA ATCAGGCAAC 88980 .......... .......... .......... .......... .......... .......... 402 CGAGGCTAGT AAACAACAGC TCGACTTACA ATCTTCTATT ATTCAGGTAC CTCAAATACC 88920 |||| |||||||||| .......... .......... .......... .......... ......GTAC CTCAAATACC 416 TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG GCTTAGGGTG ATTGCTTCCA 88860 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG GCTTANGGTG ATTGCTTCCA 476 ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT TGCTGAGAAT GAAGCAGATG 88800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT TGCTGAGAAT GAAGCAGATG 536 AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT TCTTTCTTT 88751 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT TCTTTCTTT 585 hqPGS_C09HBa0278J12.1-_SGN-E287412+ (91918 91775,91683 91427,88933 88751) ******************************************************************************** EST sequence 184 +strand 574 n (File: SGN-E336142+) 1 TTTCTCCCTA TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG 61 CAGCAGCAGT GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC 121 CAGTGGAGGA CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA 181 AGGTTGGTGG AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA 241 AAATCACCGT CACTTGCAAC TCCACTTTTT CCAAGAGGTA CCTCAAATAC CTTGTCAAAA 301 AGTACTTGAA GAAAAACAAC GTTAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA 361 GGAATGTTTA TGAGTTGCGC TACTTCAACA TTGCCGAGAA TGAAGCAGAT GAAGAAGATT 421 AAACATGTCT AGTCAATGTC CCTTTTATCT TCTTATTTTG AACCTTATAT CATCTGTTTG 481 AGTTATTAAT GAGCCGTATC TTCTCATTTC CAGATTATTG ATTTTTTGTC CCCTTATCAG 541 TAAAAGAAAA CGTTACTTTG ATACAAAAAA AAAA Predicted gene structure (within gDNA segment 93176 to 86704): Exon 1 91706 91427 ( 280 n); cDNA 2 277 ( 276 n); score: 0.898 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88751 ( 183 n); cDNA 278 459 ( 182 n); score: 0.934 PPA cDNA 565 574 MATCH C09HBa0278J12.1- SGN-E336142+ 0.913 463 0.807 C PGS_C09HBa0278J12.1-_SGN-E336142+ (91706 91427,88933 88751) Alignment (genomic DNA sequence = upper lines): TTTTTGCT-T TTGAATGCCA GCAGAAGAGA AATACAGAGA GTGTAAAGAT GAGCCGAGCA 91648 || | || | |||||| || |||||||||| ||| || ||| | |||||||| ||||| | | TTCTCCCTAT TTGAATAGCA GCAGAAGAGA AAT-CA-AGA GCGTAAAGAT GAGCC--G-A 56 GCAGCAGCAG CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT TGACTGTTCG 91588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCAGCAGCAG CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT CGACTGTTCG 116 AAGCCGGTAG AAGACAGTAT CATGGAGATT GCTTCTCTTG ACAAGTTCCT TCAAGAGAGG 91528 ||||| || | | |||||||| ||||||||| |||||||||| |||||||||| |||||||| AAGCCAGTGG AGGACAGTAT TATGGAGATT GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA 176 ATTAAGGTTG GTGGAAAAGC TGGTGCTCTT GGGGATTCCG TTACTGTTAC TCGTGACAAG 91468 |||||||||| |||||||||| |||||| ||| || ||||||| ||||||| || |||||| ||| ATTAAGGTTG GTGGAAAAGC TGGTGCACTT GGAGATTCCG TTACTGTCAC TCGTGATAAG 236 AACAAGATCA CCGTCACCTG CAACTCAACT TTTTCCAAGA GGTACTGATT CTATTGCCTC 91408 || || |||| ||||||| || |||||| ||| |||||||||| | AATAAAATCA CCGTCACTTG CAACTCCACT TTTTCCAAGA G......... .......... 277 ATTTTCAGTT GTGTTTATTT GAAAAAAAAA TGATTCTAGA AACTAAACTC TACTCGTAGA 91348 .......... .......... .......... .......... .......... .......... 277 TCATAAATTA CTAGCTACAG TCGACTTCTA TTATAGTTTG ATAACGATTA CACTTACCGA 91288 .......... .......... .......... .......... .......... .......... 277 TTGACAGTAA CTTATCGCAG ACCTATTCGA TTATCCAGTG AGTTCTGTGT AGTCATTCAC 91228 .......... .......... .......... .......... .......... .......... 277 ACATTAAGCT TTGACTCAGT TGGTAATCAG ATAAATATAT AGTTAATTTG ATAAGTTTTT 91168 .......... .......... .......... .......... .......... .......... 277 GATATTTGAA TGATTAAATC CGACAAACAG AACCATTTTA GACCTACTCC TGTAGTTAAA 91108 .......... .......... .......... .......... .......... .......... 277 TGAACTATTT ATTTAGGACA TTATTCTCTC TTTTTTGGTG TTTATTTTTG TACTAGAGGA 91048 .......... .......... .......... .......... .......... .......... 277 CGGGCTTCGC ACGTGTATTT TATGTGAATT TTTATAGATA TGTTATAATG ATAAAAATTT 90988 .......... .......... .......... .......... .......... .......... 277 CATGGAAATA TATATGTAAA TTAATGAATA ATATAATGTA ACAATTACAA AATAAGAATA 90928 .......... .......... .......... .......... .......... .......... 277 AAGACTTACG CAATAAAATA TTCATAAAAA AACTAAATTA AGAAGTCTGA TGGTGATAAA 90868 .......... .......... .......... .......... .......... .......... 277 AATAAAAGAC AAAAAAAAGA CAGATTTAAG AATGATCCAA TGTAAACAAT GTTCTTATAA 90808 .......... .......... .......... .......... .......... .......... 277 GACTGATGTA TGTATAGATG AAAAAAATAA GTACATAACT CTCTGAGTTC TTATCGACTC 90748 .......... .......... .......... .......... .......... .......... 277 CTTTCATATC CTATCAAAAT TCAAGAGGTT TCTTCATCTA CTTTAACTAT TGAATGAAAA 90688 .......... .......... .......... .......... .......... .......... 277 TGATAGCCTA GTAATCTTGG TAGGGGTTTC ATGAGATTAA AAAAGTTGAA TTTATATAGA 90628 .......... .......... .......... .......... .......... .......... 277 TAGAATAGAA GGAATATCAA AAGATATATT AAAGTTTTAG TTTAAATATT TGGAGGTTAT 90568 .......... .......... .......... .......... .......... .......... 277 GAATATGAAA AGATGAGAGT TATGAATATT AAGAGTATAA AGTTGAATAA GTAATTAACA 90508 .......... .......... .......... .......... .......... .......... 277 AATAATAATA AATAAATGAA GAATATGAAA AAAGAAGTTA AAATTAGCAA ACCATGTAGA 90448 .......... .......... .......... .......... .......... .......... 277 AAGAACAACT AAAGGTCTTA TCACGTAATT AAGCGTTAAT AAATTTAGAT TTGTGAAGAT 90388 .......... .......... .......... .......... .......... .......... 277 AGAGTCATTC TTTAATAATA ATCGAGAGGA CATTATCAAC GTGTGTCTCC ATTTTGCAGA 90328 .......... .......... .......... .......... .......... .......... 277 TTTGCACCCT TTATATTATT AAATTCGTTA TTTATCATAA AGGATAATAC TTTATCCACA 90268 .......... .......... .......... .......... .......... .......... 277 TAAATTATAT TATTCATGAG AGGGGTTAAG GAAAAAGTTA TGAGAAAGAG GAAAAATATA 90208 .......... .......... .......... .......... .......... .......... 277 GCAATTTAGT AAAGACTTTT TTTTTAAAAA AAAATTATAA TTATTATATA CATATAGATT 90148 .......... .......... .......... .......... .......... .......... 277 ATAGATGATA AATATTAATT AATTGGATAT TTAATTAGAA ATCAATCTTT AGAAGTCTAA 90088 .......... .......... .......... .......... .......... .......... 277 AAGTCATTAA CCTTTTAATT AAATTTATAC AATCAAATAT TTAAATATTT TATAACAATT 90028 .......... .......... .......... .......... .......... .......... 277 TAATTTATAG GAGGGGTAAA ACTGTAATTC AACTTTCAAC TTTTTTTGTT GATGCTTTTA 89968 .......... .......... .......... .......... .......... .......... 277 GTAATACATG ATGAATTAAG AGTGCCCAGA CTTGAAGCAC AGTTCCACTC TGGATTTATC 89908 .......... .......... .......... .......... .......... .......... 277 ACTGTTTATT TATCCAAAAA CACTATCCTG TTTACATTGG GAAATCAGTA GAAACAGAAT 89848 .......... .......... .......... .......... .......... .......... 277 GACTAAAACA GCAGTGTGTT CTAAGTTCGC ATGATCGTTG AAGCCTTTAC TAAGCTTATG 89788 .......... .......... .......... .......... .......... .......... 277 GTACAGATAG TCTATATGCT TTATGATTAA GCAACTATGT CTGGGTCCCA AATTAGAAGT 89728 .......... .......... .......... .......... .......... .......... 277 CAGGGTTGGC TTTTATTGGA GTTTGATTGT TTTTACAACT GACAGTCTGA TATTAACTTA 89668 .......... .......... .......... .......... .......... .......... 277 TTCATAGCTT CTTTTATTTT GGCTCGTCTC TGCTTTACAA AGATTTCTTA TTTGGATAGT 89608 .......... .......... .......... .......... .......... .......... 277 GCAACAGCAA CAACACCATA CCCCATGTAA CCCACAAGTG AGGTCTGGGG AGGGTAGAGA 89548 .......... .......... .......... .......... .......... .......... 277 CTCTGCACTA TCCGTTAAGT GTAAGCATAC CTTCTTGGAT AGTGCAGATA TTCATAAATC 89488 .......... .......... .......... .......... .......... .......... 277 GCGCTCTTGC TAATGATTTT AAAAGGAAGT CGTTTTAACT GTTTATTATA GTTAGAGTTC 89428 .......... .......... .......... .......... .......... .......... 277 CCTGCACTGC AAGTCTAAAA GAAGCTCTCT TCTGTTCAGG ATTGTTATAC TGAACATGAT 89368 .......... .......... .......... .......... .......... .......... 277 GAGTTTATAT CGTTCTGTTG TTTGTTTATC TAATGCATTA TCCTATTTAC ATCGAGAAAC 89308 .......... .......... .......... .......... .......... .......... 277 AAAAAAACAA TTGAAACGAA AATGAAAGCA TAACATCTTG GTGTTCTGGT TTCATCCGTT 89248 .......... .......... .......... .......... .......... .......... 277 TTATGTTTCT AAGCTTGTTT TGGAAGTGAC ATCAACCATT TACTAGCTTC ACCATTCACC 89188 .......... .......... .......... .......... .......... .......... 277 TACACATCTT AGGCTTGAGT GATATTCTAA AGGCTATTTG TAAAAGAAAC TGAGAGTCTA 89128 .......... .......... .......... .......... .......... .......... 277 AAACATTATA TCAATTTACT TTGGGGTAAA TTATGTATGC CCGATTGATG AAAGAAGTTC 89068 .......... .......... .......... .......... .......... .......... 277 TTGTGATGTA GAGTTGTTGC TATGTATTCT ACTCCTACCC CTTCAAAACC AAAAGAACAG 89008 .......... .......... .......... .......... .......... .......... 277 AGTGTTAAAA GTAGTGAAAT CAGGCAACCG AGGCTAGTAA ACAACAGCTC GACTTACAAT 88948 .......... .......... .......... .......... .......... .......... 277 CTTCTATTAT TCAGGTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAATAACGTC 88888 |||||| |||||||||| |||||||||| |||||||||| ||| ||||| .......... ....GTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT 323 AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTACGA ATTGCGCTAC 88828 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||||||| AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC 383 TTCAACATTG CTGAGAATGA AGCAGATGAA GAAGATTAAA CATGACCATT CAATGTCTCT 88768 |||||||||| | |||||||| |||||||||| |||||||||| |||| | | | ||||||| || TTCAACATTG CCGAGAATGA AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT 443 CTTTATCTTC TTTCTTT 88751 ||||||||| || ||| -TTTATCTTC TTATTTT 459 hqPGS_C09HBa0278J12.1-_SGN-E336142+ (91706 91427,88933 88751) ******************************************************************************** EST sequence 298 +strand 529 n (File: SGN-E335016+) 1 GCCCGAGCAG CAGCAGCAGT GAAGGGCGGG AAGACAGAAG GGGGCAAGCT TCGTCATCGA 61 CTGTTCGAAG CCAGTGGAGG ACCAGTATTA TGGAGATTGC TTCTCTTGAC AAGTTCCTCC 121 AAGAGAGAAT TAAGGGTTGG TGGAAAAGCT GGTGCCACTT GGAGACTTCC GTTACTGTCA 181 CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC TTTTTCCAAG AGGTACCTCA 241 AATACCCTTG TCAAAAAGTA CCTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT 301 TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA 361 AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC 421 CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATN 481 TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACCTTTGA AAAAAAAAA Predicted gene structure (within gDNA segment 92746 to 86724): Exon 1 91648 91427 ( 222 n); cDNA 6 232 ( 227 n); score: 0.876 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.85) Exon 2 88933 88751 ( 183 n); cDNA 233 416 ( 184 n); score: 0.907 PPA cDNA 520 529 MATCH C09HBa0278J12.1- SGN-E335016+ 0.890 405 0.766 C PGS_C09HBa0278J12.1-_SGN-E335016+ (91648 91427,88933 88751) Alignment (genomic DNA sequence = upper lines): AGCAGCAGCA GCAGTGAAGG GCGGGAAGA- AGAAGGGGGC AAGCTTCGTC ATTGACTGTT 91590 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| AGCAGCAGCA GCAGTGAAGG GCGGGAAGAC AGAAGGGGGC AAGCTTCGTC ATCGACTGTT 65 CGAAGCCGGT AGAAGA-CAG TATCATGGAG ATTGCTTCTC TTGACAAGTT CCTTCAAGAG 91531 ||||||| || || || ||| ||| |||||| |||||||||| |||||||||| ||| |||||| CGAAGCCAGT GGAGGACCAG TATTATGGAG ATTGCTTCTC TTGACAAGTT CCTCCAAGAG 125 AGGATTAA-G GTTGGTGGAA AAGCTGGTG- CTCTTGGGGA -TTCCGTTAC TGTTACTCGT 91474 || ||||| | |||||||||| ||||||||| | ||||| || ||||||||| ||| |||||| AGAATTAAGG GTTGGTGGAA AAGCTGGTGC CACTTGGAGA CTTCCGTTAC TGTCACTCGT 185 GACAAGAACA AGATCACCGT CACCTGCAAC TCAACTTTTT CCAAGAGGTA CTGATTCTAT 91414 || ||||| | | |||||||| ||| |||||| || ||||||| ||||||| GATAAGAATA AAATCACCGT CACTTGCAAC TCCACTTTTT CCAAGAG... .......... 232 TGCCTCATTT TCAGTTGTGT TTATTTGAAA AAAAAATGAT TCTAGAAACT AAACTCTACT 91354 .......... .......... .......... .......... .......... .......... 232 CGTAGATCAT AAATTACTAG CTACAGTCGA CTTCTATTAT AGTTTGATAA CGATTACACT 91294 .......... .......... .......... .......... .......... .......... 232 TACCGATTGA CAGTAACTTA TCGCAGACCT ATTCGATTAT CCAGTGAGTT CTGTGTAGTC 91234 .......... .......... .......... .......... .......... .......... 232 ATTCACACAT TAAGCTTTGA CTCAGTTGGT AATCAGATAA ATATATAGTT AATTTGATAA 91174 .......... .......... .......... .......... .......... .......... 232 GTTTTTGATA TTTGAATGAT TAAATCCGAC AAACAGAACC ATTTTAGACC TACTCCTGTA 91114 .......... .......... .......... .......... .......... .......... 232 GTTAAATGAA CTATTTATTT AGGACATTAT TCTCTCTTTT TTGGTGTTTA TTTTTGTACT 91054 .......... .......... .......... .......... .......... .......... 232 AGAGGACGGG CTTCGCACGT GTATTTTATG TGAATTTTTA TAGATATGTT ATAATGATAA 90994 .......... .......... .......... .......... .......... .......... 232 AAATTTCATG GAAATATATA TGTAAATTAA TGAATAATAT AATGTAACAA TTACAAAATA 90934 .......... .......... .......... .......... .......... .......... 232 AGAATAAAGA CTTACGCAAT AAAATATTCA TAAAAAAACT AAATTAAGAA GTCTGATGGT 90874 .......... .......... .......... .......... .......... .......... 232 GATAAAAATA AAAGACAAAA AAAAGACAGA TTTAAGAATG ATCCAATGTA AACAATGTTC 90814 .......... .......... .......... .......... .......... .......... 232 TTATAAGACT GATGTATGTA TAGATGAAAA AAATAAGTAC ATAACTCTCT GAGTTCTTAT 90754 .......... .......... .......... .......... .......... .......... 232 CGACTCCTTT CATATCCTAT CAAAATTCAA GAGGTTTCTT CATCTACTTT AACTATTGAA 90694 .......... .......... .......... .......... .......... .......... 232 TGAAAATGAT AGCCTAGTAA TCTTGGTAGG GGTTTCATGA GATTAAAAAA GTTGAATTTA 90634 .......... .......... .......... .......... .......... .......... 232 TATAGATAGA ATAGAAGGAA TATCAAAAGA TATATTAAAG TTTTAGTTTA AATATTTGGA 90574 .......... .......... .......... .......... .......... .......... 232 GGTTATGAAT ATGAAAAGAT GAGAGTTATG AATATTAAGA GTATAAAGTT GAATAAGTAA 90514 .......... .......... .......... .......... .......... .......... 232 TTAACAAATA ATAATAAATA AATGAAGAAT ATGAAAAAAG AAGTTAAAAT TAGCAAACCA 90454 .......... .......... .......... .......... .......... .......... 232 TGTAGAAAGA ACAACTAAAG GTCTTATCAC GTAATTAAGC GTTAATAAAT TTAGATTTGT 90394 .......... .......... .......... .......... .......... .......... 232 GAAGATAGAG TCATTCTTTA ATAATAATCG AGAGGACATT ATCAACGTGT GTCTCCATTT 90334 .......... .......... .......... .......... .......... .......... 232 TGCAGATTTG CACCCTTTAT ATTATTAAAT TCGTTATTTA TCATAAAGGA TAATACTTTA 90274 .......... .......... .......... .......... .......... .......... 232 TCCACATAAA TTATATTATT CATGAGAGGG GTTAAGGAAA AAGTTATGAG AAAGAGGAAA 90214 .......... .......... .......... .......... .......... .......... 232 AATATAGCAA TTTAGTAAAG ACTTTTTTTT TAAAAAAAAA TTATAATTAT TATATACATA 90154 .......... .......... .......... .......... .......... .......... 232 TAGATTATAG ATGATAAATA TTAATTAATT GGATATTTAA TTAGAAATCA ATCTTTAGAA 90094 .......... .......... .......... .......... .......... .......... 232 GTCTAAAAGT CATTAACCTT TTAATTAAAT TTATACAATC AAATATTTAA ATATTTTATA 90034 .......... .......... .......... .......... .......... .......... 232 ACAATTTAAT TTATAGGAGG GGTAAAACTG TAATTCAACT TTCAACTTTT TTTGTTGATG 89974 .......... .......... .......... .......... .......... .......... 232 CTTTTAGTAA TACATGATGA ATTAAGAGTG CCCAGACTTG AAGCACAGTT CCACTCTGGA 89914 .......... .......... .......... .......... .......... .......... 232 TTTATCACTG TTTATTTATC CAAAAACACT ATCCTGTTTA CATTGGGAAA TCAGTAGAAA 89854 .......... .......... .......... .......... .......... .......... 232 CAGAATGACT AAAACAGCAG TGTGTTCTAA GTTCGCATGA TCGTTGAAGC CTTTACTAAG 89794 .......... .......... .......... .......... .......... .......... 232 CTTATGGTAC AGATAGTCTA TATGCTTTAT GATTAAGCAA CTATGTCTGG GTCCCAAATT 89734 .......... .......... .......... .......... .......... .......... 232 AGAAGTCAGG GTTGGCTTTT ATTGGAGTTT GATTGTTTTT ACAACTGACA GTCTGATATT 89674 .......... .......... .......... .......... .......... .......... 232 AACTTATTCA TAGCTTCTTT TATTTTGGCT CGTCTCTGCT TTACAAAGAT TTCTTATTTG 89614 .......... .......... .......... .......... .......... .......... 232 GATAGTGCAA CAGCAACAAC ACCATACCCC ATGTAACCCA CAAGTGAGGT CTGGGGAGGG 89554 .......... .......... .......... .......... .......... .......... 232 TAGAGACTCT GCACTATCCG TTAAGTGTAA GCATACCTTC TTGGATAGTG CAGATATTCA 89494 .......... .......... .......... .......... .......... .......... 232 TAAATCGCGC TCTTGCTAAT GATTTTAAAA GGAAGTCGTT TTAACTGTTT ATTATAGTTA 89434 .......... .......... .......... .......... .......... .......... 232 GAGTTCCCTG CACTGCAAGT CTAAAAGAAG CTCTCTTCTG TTCAGGATTG TTATACTGAA 89374 .......... .......... .......... .......... .......... .......... 232 CATGATGAGT TTATATCGTT CTGTTGTTTG TTTATCTAAT GCATTATCCT ATTTACATCG 89314 .......... .......... .......... .......... .......... .......... 232 AGAAACAAAA AAACAATTGA AACGAAAATG AAAGCATAAC ATCTTGGTGT TCTGGTTTCA 89254 .......... .......... .......... .......... .......... .......... 232 TCCGTTTTAT GTTTCTAAGC TTGTTTTGGA AGTGACATCA ACCATTTACT AGCTTCACCA 89194 .......... .......... .......... .......... .......... .......... 232 TTCACCTACA CATCTTAGGC TTGAGTGATA TTCTAAAGGC TATTTGTAAA AGAAACTGAG 89134 .......... .......... .......... .......... .......... .......... 232 AGTCTAAAAC ATTATATCAA TTTACTTTGG GGTAAATTAT GTATGCCCGA TTGATGAAAG 89074 .......... .......... .......... .......... .......... .......... 232 AAGTTCTTGT GATGTAGAGT TGTTGCTATG TATTCTACTC CTACCCCTTC AAAACCAAAA 89014 .......... .......... .......... .......... .......... .......... 232 GAACAGAGTG TTAAAAGTAG TGAAATCAGG CAACCGAGGC TAGTAAACAA CAGCTCGACT 88954 .......... .......... .......... .......... .......... .......... 232 TACAATCTTC TATTATTCAG GTACCTCAAA TA-CCTTGTC AAAAAGTA-C TTGAAGAAAA 88896 |||||||||| || ||||||| |||||||| | |||||||||| .......... .......... GTACCTCAAA TACCCTTGTC AAAAAGTACC TTGAAGAAAA 272 ATAACGTCAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTACGAAT 88836 | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | ACAACGTTAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTATGAGT 332 TGCGCTACTT CAACATTGCT GAGAATGAAG CAGATGAAGA AGATTAAACA TGACCATTCA 88776 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| || | | ||| TGCGCTACTT CAACATTGCC GAGAATGAAG CAGATGAAGA AGATTAAACA TGTCTAGTCA 392 ATGTCTCTCT TTATCTTCTT TCTTT 88751 ||||| || | |||||||||| ||| ATGTCCCT-T TTATCTTCTT ATTTT 416 hqPGS_C09HBa0278J12.1-_SGN-E335016+ (91648 91427,88933 88751) ******************************************************************************** EST sequence 109 -strand 494 n (File: SGN-E284720-) 1 AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGA AGGACAGTAT TATGGAGATT 61 GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAGGGTTG GTGAAAAAGC TGGTGCACTT 121 GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT 181 TTTTCCAAGA GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA CAACGTTAGG 241 GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG TTTATGAGTT GCGCTACTTC 301 AACATTGCCG AGAATGAAGC AGATGAAGAA GATTAAACAT GTCTAGTCAA TGTCCCTTTT 361 ATCTTCTTAT TTTGAACCTT ATATCATCTG TTTGAGTTAT TAATGAGCCG TATCTTCTCA 421 TTTCCAGATT ATTGATTTTT TGTCCCCTTA TCAGTAAAAG AAACCGTTAC TTTGATAAAA 481 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 92035 to 86654): Exon 1 91617 91427 ( 191 n); cDNA 1 191 ( 191 n); score: 0.906 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88751 ( 183 n); cDNA 192 373 ( 182 n); score: 0.934 PPA cDNA 475 494 MATCH C09HBa0278J12.1- SGN-E284720- 0.920 374 0.757 C PGS_C09HBa0278J12.1-_SGN-E284720- (91617 91427,88933 88751) Alignment (genomic DNA sequence = upper lines): AAGGGGGCAA GCTTCGTCAT TGACTGTTCG AAGCCGGTAG AAGACAGTAT CATGGAGATT 91558 |||||||||| |||||||||| ||||||||| ||||| || | |||||||| ||||||||| AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGA AGGACAGTAT TATGGAGATT 60 GCTTCTCTTG ACAAGTTCCT TCAAGAGAGG ATTAAGGTTG GTGGAAAAGC TGGTGCTCTT 91498 |||||||||| |||||||||| |||||||| |||| ||||| ||| |||||| |||||| ||| GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAGGGTTG GTGAAAAAGC TGGTGCACTT 120 GGGGATTCCG TTACTGTTAC TCGTGACAAG AACAAGATCA CCGTCACCTG CAACTCAACT 91438 || ||||||| ||||||| || |||||| ||| || || |||| ||||||| || |||||| ||| GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT 180 TTTTCCAAGA GGTACTGATT CTATTGCCTC ATTTTCAGTT GTGTTTATTT GAAAAAAAAA 91378 |||||||||| | TTTTCCAAGA G......... .......... .......... .......... .......... 191 TGATTCTAGA AACTAAACTC TACTCGTAGA TCATAAATTA CTAGCTACAG TCGACTTCTA 91318 .......... .......... .......... .......... .......... .......... 191 TTATAGTTTG ATAACGATTA CACTTACCGA TTGACAGTAA CTTATCGCAG ACCTATTCGA 91258 .......... .......... .......... .......... .......... .......... 191 TTATCCAGTG AGTTCTGTGT AGTCATTCAC ACATTAAGCT TTGACTCAGT TGGTAATCAG 91198 .......... .......... .......... .......... .......... .......... 191 ATAAATATAT AGTTAATTTG ATAAGTTTTT GATATTTGAA TGATTAAATC CGACAAACAG 91138 .......... .......... .......... .......... .......... .......... 191 AACCATTTTA GACCTACTCC TGTAGTTAAA TGAACTATTT ATTTAGGACA TTATTCTCTC 91078 .......... .......... .......... .......... .......... .......... 191 TTTTTTGGTG TTTATTTTTG TACTAGAGGA CGGGCTTCGC ACGTGTATTT TATGTGAATT 91018 .......... .......... .......... .......... .......... .......... 191 TTTATAGATA TGTTATAATG ATAAAAATTT CATGGAAATA TATATGTAAA TTAATGAATA 90958 .......... .......... .......... .......... .......... .......... 191 ATATAATGTA ACAATTACAA AATAAGAATA AAGACTTACG CAATAAAATA TTCATAAAAA 90898 .......... .......... .......... .......... .......... .......... 191 AACTAAATTA AGAAGTCTGA TGGTGATAAA AATAAAAGAC AAAAAAAAGA CAGATTTAAG 90838 .......... .......... .......... .......... .......... .......... 191 AATGATCCAA TGTAAACAAT GTTCTTATAA GACTGATGTA TGTATAGATG AAAAAAATAA 90778 .......... .......... .......... .......... .......... .......... 191 GTACATAACT CTCTGAGTTC TTATCGACTC CTTTCATATC CTATCAAAAT TCAAGAGGTT 90718 .......... .......... .......... .......... .......... .......... 191 TCTTCATCTA CTTTAACTAT TGAATGAAAA TGATAGCCTA GTAATCTTGG TAGGGGTTTC 90658 .......... .......... .......... .......... .......... .......... 191 ATGAGATTAA AAAAGTTGAA TTTATATAGA TAGAATAGAA GGAATATCAA AAGATATATT 90598 .......... .......... .......... .......... .......... .......... 191 AAAGTTTTAG TTTAAATATT TGGAGGTTAT GAATATGAAA AGATGAGAGT TATGAATATT 90538 .......... .......... .......... .......... .......... .......... 191 AAGAGTATAA AGTTGAATAA GTAATTAACA AATAATAATA AATAAATGAA GAATATGAAA 90478 .......... .......... .......... .......... .......... .......... 191 AAAGAAGTTA AAATTAGCAA ACCATGTAGA AAGAACAACT AAAGGTCTTA TCACGTAATT 90418 .......... .......... .......... .......... .......... .......... 191 AAGCGTTAAT AAATTTAGAT TTGTGAAGAT AGAGTCATTC TTTAATAATA ATCGAGAGGA 90358 .......... .......... .......... .......... .......... .......... 191 CATTATCAAC GTGTGTCTCC ATTTTGCAGA TTTGCACCCT TTATATTATT AAATTCGTTA 90298 .......... .......... .......... .......... .......... .......... 191 TTTATCATAA AGGATAATAC TTTATCCACA TAAATTATAT TATTCATGAG AGGGGTTAAG 90238 .......... .......... .......... .......... .......... .......... 191 GAAAAAGTTA TGAGAAAGAG GAAAAATATA GCAATTTAGT AAAGACTTTT TTTTTAAAAA 90178 .......... .......... .......... .......... .......... .......... 191 AAAATTATAA TTATTATATA CATATAGATT ATAGATGATA AATATTAATT AATTGGATAT 90118 .......... .......... .......... .......... .......... .......... 191 TTAATTAGAA ATCAATCTTT AGAAGTCTAA AAGTCATTAA CCTTTTAATT AAATTTATAC 90058 .......... .......... .......... .......... .......... .......... 191 AATCAAATAT TTAAATATTT TATAACAATT TAATTTATAG GAGGGGTAAA ACTGTAATTC 89998 .......... .......... .......... .......... .......... .......... 191 AACTTTCAAC TTTTTTTGTT GATGCTTTTA GTAATACATG ATGAATTAAG AGTGCCCAGA 89938 .......... .......... .......... .......... .......... .......... 191 CTTGAAGCAC AGTTCCACTC TGGATTTATC ACTGTTTATT TATCCAAAAA CACTATCCTG 89878 .......... .......... .......... .......... .......... .......... 191 TTTACATTGG GAAATCAGTA GAAACAGAAT GACTAAAACA GCAGTGTGTT CTAAGTTCGC 89818 .......... .......... .......... .......... .......... .......... 191 ATGATCGTTG AAGCCTTTAC TAAGCTTATG GTACAGATAG TCTATATGCT TTATGATTAA 89758 .......... .......... .......... .......... .......... .......... 191 GCAACTATGT CTGGGTCCCA AATTAGAAGT CAGGGTTGGC TTTTATTGGA GTTTGATTGT 89698 .......... .......... .......... .......... .......... .......... 191 TTTTACAACT GACAGTCTGA TATTAACTTA TTCATAGCTT CTTTTATTTT GGCTCGTCTC 89638 .......... .......... .......... .......... .......... .......... 191 TGCTTTACAA AGATTTCTTA TTTGGATAGT GCAACAGCAA CAACACCATA CCCCATGTAA 89578 .......... .......... .......... .......... .......... .......... 191 CCCACAAGTG AGGTCTGGGG AGGGTAGAGA CTCTGCACTA TCCGTTAAGT GTAAGCATAC 89518 .......... .......... .......... .......... .......... .......... 191 CTTCTTGGAT AGTGCAGATA TTCATAAATC GCGCTCTTGC TAATGATTTT AAAAGGAAGT 89458 .......... .......... .......... .......... .......... .......... 191 CGTTTTAACT GTTTATTATA GTTAGAGTTC CCTGCACTGC AAGTCTAAAA GAAGCTCTCT 89398 .......... .......... .......... .......... .......... .......... 191 TCTGTTCAGG ATTGTTATAC TGAACATGAT GAGTTTATAT CGTTCTGTTG TTTGTTTATC 89338 .......... .......... .......... .......... .......... .......... 191 TAATGCATTA TCCTATTTAC ATCGAGAAAC AAAAAAACAA TTGAAACGAA AATGAAAGCA 89278 .......... .......... .......... .......... .......... .......... 191 TAACATCTTG GTGTTCTGGT TTCATCCGTT TTATGTTTCT AAGCTTGTTT TGGAAGTGAC 89218 .......... .......... .......... .......... .......... .......... 191 ATCAACCATT TACTAGCTTC ACCATTCACC TACACATCTT AGGCTTGAGT GATATTCTAA 89158 .......... .......... .......... .......... .......... .......... 191 AGGCTATTTG TAAAAGAAAC TGAGAGTCTA AAACATTATA TCAATTTACT TTGGGGTAAA 89098 .......... .......... .......... .......... .......... .......... 191 TTATGTATGC CCGATTGATG AAAGAAGTTC TTGTGATGTA GAGTTGTTGC TATGTATTCT 89038 .......... .......... .......... .......... .......... .......... 191 ACTCCTACCC CTTCAAAACC AAAAGAACAG AGTGTTAAAA GTAGTGAAAT CAGGCAACCG 88978 .......... .......... .......... .......... .......... .......... 191 AGGCTAGTAA ACAACAGCTC GACTTACAAT CTTCTATTAT TCAGGTACCT CAAATACCTT 88918 |||||| |||||||||| .......... .......... .......... .......... ....GTACCT CAAATACCTT 207 GTCAAAAAGT ACTTGAAGAA AAATAACGTC AGGGATTGGC TTAGGGTGAT TGCTTCCAAC 88858 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT TGCTTCCAAC 267 AAGGACAGGA ATGTTTACGA ATTGCGCTAC TTCAACATTG CTGAGAATGA AGCAGATGAA 88798 |||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||||||| AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA AGCAGATGAA 327 GAAGATTAAA CATGACCATT CAATGTCTCT CTTTATCTTC TTTCTTT 88751 |||||||||| |||| | | | ||||||| || ||||||||| || ||| GAAGATTAAA CATGTCTAGT CAATGTCCCT -TTTATCTTC TTATTTT 373 hqPGS_C09HBa0278J12.1-_SGN-E284720- (91617 91427,88933 88751) ******************************************************************************** EST sequence 426 +strand 519 n (File: SGN-E357774+) 1 CCTATTTGAA TAGCAGCAGA AGAGAAATCA AGAGCGTAAA GATGAGCCGA GCAGCAGCAG 61 CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGG 121 AGGACAGTAT TATGGAGATT GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAAGGTTG 181 GTGGAAAAGC TGGTGCACTT GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA 241 CCGTCACTTG CAACTCCACT TTTTCCAAGA GGTACCTCAA ATACCTTGTC AAAAAGTACT 301 TGAAGAAAAA CAACGTTAGG GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG 361 TTTATGAGTT GCGCTACTTC AACATTGCCG AGAATGAAGC AGATGAAGAA GATTAAACAT 421 GTCTAGTCAA TGTCCCTTTT ATCTTCTTAT TTTGAACCTT ATATCATCTG TTTGAGTTAT 481 TAATGAGCCG TATCTTCTCA TTTCCAGATT AAAAAAAAA Predicted gene structure (within gDNA segment 93116 to 87194): Exon 1 91698 91427 ( 272 n); cDNA 5 271 ( 267 n); score: 0.915 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88774 ( 160 n); cDNA 272 431 ( 160 n); score: 0.950 MATCH C09HBa0278J12.1- SGN-E357774+ 0.928 432 0.832 C PGS_C09HBa0278J12.1-_SGN-E357774+ (91698 91427,88933 88774) Alignment (genomic DNA sequence = upper lines): TTTGAATGCC AGCAGAAGAG AAATACAGAG AGTGTAAAGA TGAGCCGAGC AGCAGCAGCA 91639 ||||||| | |||||||||| |||| || || || ||||||| ||||||| |||||||||| TTTGAATAGC AGCAGAAGAG AAAT-CA-AG AGCGTAAAGA TGAGCCG--- AGCAGCAGCA 59 GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA AGCTTCGTCA TTGACTGTTC GAAGCCGGTA 91579 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||| || GCAGTGAAGG GCGGGAAGAA GAAGGGGGCA AGCTTCGTCA TCGACTGTTC GAAGCCAGTG 119 GAAGACAGTA TCATGGAGAT TGCTTCTCTT GACAAGTTCC TTCAAGAGAG GATTAAGGTT 91519 || ||||||| | |||||||| |||||||||| |||||||||| | |||||||| ||||||||| GAGGACAGTA TTATGGAGAT TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT 179 GGTGGAAAAG CTGGTGCTCT TGGGGATTCC GTTACTGTTA CTCGTGACAA GAACAAGATC 91459 |||||||||| ||||||| || ||| |||||| |||||||| | ||||||| || ||| || ||| GGTGGAAAAG CTGGTGCACT TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC 239 ACCGTCACCT GCAACTCAAC TTTTTCCAAG AGGTACTGAT TCTATTGCCT CATTTTCAGT 91399 |||||||| | ||||||| || |||||||||| || ACCGTCACTT GCAACTCCAC TTTTTCCAAG AG........ .......... .......... 271 TGTGTTTATT TGAAAAAAAA ATGATTCTAG AAACTAAACT CTACTCGTAG ATCATAAATT 91339 .......... .......... .......... .......... .......... .......... 271 ACTAGCTACA GTCGACTTCT ATTATAGTTT GATAACGATT ACACTTACCG ATTGACAGTA 91279 .......... .......... .......... .......... .......... .......... 271 ACTTATCGCA GACCTATTCG ATTATCCAGT GAGTTCTGTG TAGTCATTCA CACATTAAGC 91219 .......... .......... .......... .......... .......... .......... 271 TTTGACTCAG TTGGTAATCA GATAAATATA TAGTTAATTT GATAAGTTTT TGATATTTGA 91159 .......... .......... .......... .......... .......... .......... 271 ATGATTAAAT CCGACAAACA GAACCATTTT AGACCTACTC CTGTAGTTAA ATGAACTATT 91099 .......... .......... .......... .......... .......... .......... 271 TATTTAGGAC ATTATTCTCT CTTTTTTGGT GTTTATTTTT GTACTAGAGG ACGGGCTTCG 91039 .......... .......... .......... .......... .......... .......... 271 CACGTGTATT TTATGTGAAT TTTTATAGAT ATGTTATAAT GATAAAAATT TCATGGAAAT 90979 .......... .......... .......... .......... .......... .......... 271 ATATATGTAA ATTAATGAAT AATATAATGT AACAATTACA AAATAAGAAT AAAGACTTAC 90919 .......... .......... .......... .......... .......... .......... 271 GCAATAAAAT ATTCATAAAA AAACTAAATT AAGAAGTCTG ATGGTGATAA AAATAAAAGA 90859 .......... .......... .......... .......... .......... .......... 271 CAAAAAAAAG ACAGATTTAA GAATGATCCA ATGTAAACAA TGTTCTTATA AGACTGATGT 90799 .......... .......... .......... .......... .......... .......... 271 ATGTATAGAT GAAAAAAATA AGTACATAAC TCTCTGAGTT CTTATCGACT CCTTTCATAT 90739 .......... .......... .......... .......... .......... .......... 271 CCTATCAAAA TTCAAGAGGT TTCTTCATCT ACTTTAACTA TTGAATGAAA ATGATAGCCT 90679 .......... .......... .......... .......... .......... .......... 271 AGTAATCTTG GTAGGGGTTT CATGAGATTA AAAAAGTTGA ATTTATATAG ATAGAATAGA 90619 .......... .......... .......... .......... .......... .......... 271 AGGAATATCA AAAGATATAT TAAAGTTTTA GTTTAAATAT TTGGAGGTTA TGAATATGAA 90559 .......... .......... .......... .......... .......... .......... 271 AAGATGAGAG TTATGAATAT TAAGAGTATA AAGTTGAATA AGTAATTAAC AAATAATAAT 90499 .......... .......... .......... .......... .......... .......... 271 AAATAAATGA AGAATATGAA AAAAGAAGTT AAAATTAGCA AACCATGTAG AAAGAACAAC 90439 .......... .......... .......... .......... .......... .......... 271 TAAAGGTCTT ATCACGTAAT TAAGCGTTAA TAAATTTAGA TTTGTGAAGA TAGAGTCATT 90379 .......... .......... .......... .......... .......... .......... 271 CTTTAATAAT AATCGAGAGG ACATTATCAA CGTGTGTCTC CATTTTGCAG ATTTGCACCC 90319 .......... .......... .......... .......... .......... .......... 271 TTTATATTAT TAAATTCGTT ATTTATCATA AAGGATAATA CTTTATCCAC ATAAATTATA 90259 .......... .......... .......... .......... .......... .......... 271 TTATTCATGA GAGGGGTTAA GGAAAAAGTT ATGAGAAAGA GGAAAAATAT AGCAATTTAG 90199 .......... .......... .......... .......... .......... .......... 271 TAAAGACTTT TTTTTTAAAA AAAAATTATA ATTATTATAT ACATATAGAT TATAGATGAT 90139 .......... .......... .......... .......... .......... .......... 271 AAATATTAAT TAATTGGATA TTTAATTAGA AATCAATCTT TAGAAGTCTA AAAGTCATTA 90079 .......... .......... .......... .......... .......... .......... 271 ACCTTTTAAT TAAATTTATA CAATCAAATA TTTAAATATT TTATAACAAT TTAATTTATA 90019 .......... .......... .......... .......... .......... .......... 271 GGAGGGGTAA AACTGTAATT CAACTTTCAA CTTTTTTTGT TGATGCTTTT AGTAATACAT 89959 .......... .......... .......... .......... .......... .......... 271 GATGAATTAA GAGTGCCCAG ACTTGAAGCA CAGTTCCACT CTGGATTTAT CACTGTTTAT 89899 .......... .......... .......... .......... .......... .......... 271 TTATCCAAAA ACACTATCCT GTTTACATTG GGAAATCAGT AGAAACAGAA TGACTAAAAC 89839 .......... .......... .......... .......... .......... .......... 271 AGCAGTGTGT TCTAAGTTCG CATGATCGTT GAAGCCTTTA CTAAGCTTAT GGTACAGATA 89779 .......... .......... .......... .......... .......... .......... 271 GTCTATATGC TTTATGATTA AGCAACTATG TCTGGGTCCC AAATTAGAAG TCAGGGTTGG 89719 .......... .......... .......... .......... .......... .......... 271 CTTTTATTGG AGTTTGATTG TTTTTACAAC TGACAGTCTG ATATTAACTT ATTCATAGCT 89659 .......... .......... .......... .......... .......... .......... 271 TCTTTTATTT TGGCTCGTCT CTGCTTTACA AAGATTTCTT ATTTGGATAG TGCAACAGCA 89599 .......... .......... .......... .......... .......... .......... 271 ACAACACCAT ACCCCATGTA ACCCACAAGT GAGGTCTGGG GAGGGTAGAG ACTCTGCACT 89539 .......... .......... .......... .......... .......... .......... 271 ATCCGTTAAG TGTAAGCATA CCTTCTTGGA TAGTGCAGAT ATTCATAAAT CGCGCTCTTG 89479 .......... .......... .......... .......... .......... .......... 271 CTAATGATTT TAAAAGGAAG TCGTTTTAAC TGTTTATTAT AGTTAGAGTT CCCTGCACTG 89419 .......... .......... .......... .......... .......... .......... 271 CAAGTCTAAA AGAAGCTCTC TTCTGTTCAG GATTGTTATA CTGAACATGA TGAGTTTATA 89359 .......... .......... .......... .......... .......... .......... 271 TCGTTCTGTT GTTTGTTTAT CTAATGCATT ATCCTATTTA CATCGAGAAA CAAAAAAACA 89299 .......... .......... .......... .......... .......... .......... 271 ATTGAAACGA AAATGAAAGC ATAACATCTT GGTGTTCTGG TTTCATCCGT TTTATGTTTC 89239 .......... .......... .......... .......... .......... .......... 271 TAAGCTTGTT TTGGAAGTGA CATCAACCAT TTACTAGCTT CACCATTCAC CTACACATCT 89179 .......... .......... .......... .......... .......... .......... 271 TAGGCTTGAG TGATATTCTA AAGGCTATTT GTAAAAGAAA CTGAGAGTCT AAAACATTAT 89119 .......... .......... .......... .......... .......... .......... 271 ATCAATTTAC TTTGGGGTAA ATTATGTATG CCCGATTGAT GAAAGAAGTT CTTGTGATGT 89059 .......... .......... .......... .......... .......... .......... 271 AGAGTTGTTG CTATGTATTC TACTCCTACC CCTTCAAAAC CAAAAGAACA GAGTGTTAAA 88999 .......... .......... .......... .......... .......... .......... 271 AGTAGTGAAA TCAGGCAACC GAGGCTAGTA AACAACAGCT CGACTTACAA TCTTCTATTA 88939 .......... .......... .......... .......... .......... .......... 271 TTCAGGTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAATAACGT CAGGGATTGG 88879 ||||| |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| .....GTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 326 CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTACG AATTGCGCTA CTTCAACATT 88819 |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| |||||||||| CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 386 GCTGAGAATG AAGCAGATGA AGAAGATTAA ACATGACCAT TCAAT 88774 || ||||||| |||||||||| |||||||||| ||||| | | ||||| GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAAT 431 hqPGS_C09HBa0278J12.1-_SGN-E357774+ (91698 91427,88933 88774) ******************************************************************************** EST sequence 374 +strand 482 n (File: SGN-E285777+) 1 TTGAATAGCA GCAGAAGAGA AATCAAGAGC GTAAAGATGA GCCGAGCAGC AGCAGCAGTG 61 AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC GTCATCGACT GTTCGAAGCC AGTGGAGGAC 121 AGTATTATGG AGATTGCTTC TCTTGACAAG TTCCTCCAAG AGAGAATTAA GGTTGGTGGA 181 AAAGCTGGTG CACTTGGAGA TTCCGTTACT GTCACTCGTG ATAAGAATAA AATCACCGTC 241 ACTTGCAACT CCACTTTTTC CAAGAGGTAC CTCAAATACC TTGTCAAAAA GTACTTGAAG 301 AAAAACAACG TTAGGGATTG GCTTAGGGTG ATTGCTTCCA ACAAGGACAG GAATGTTTAT 361 GAGTTGCGCT ACTTCAACAT TGCCGAGAAT GAAGCAGATG AAGAAGATTA AACATGTCTA 421 GTCAATGTCC CTTTTATCTT CTTATTTTGA ACCTTATATC ATCTGTTTGA GTTATTAATG 481 AG Predicted gene structure (within gDNA segment 93066 to 87514): Exon 1 91697 91427 ( 271 n); cDNA 1 266 ( 266 n); score: 0.915 Intron 1 91426 88934 (2493 n); Pd: 0.999 (s: 0.90), Pa: 0.000 (s: 0.96) Exon 2 88933 88774 ( 160 n); cDNA 267 426 ( 160 n); score: 0.950 MATCH C09HBa0278J12.1- SGN-E285777+ 0.928 431 0.894 C PGS_C09HBa0278J12.1-_SGN-E285777+ (91697 91427,88933 88774) Alignment (genomic DNA sequence = upper lines): TTGAATGCCA GCAGAAGAGA AATACAGAGA GTGTAAAGAT GAGCCGAGCA GCAGCAGCAG 91638 |||||| || |||||||||| ||| || ||| | |||||||| ||||| | | |||||||||| TTGAATAGCA GCAGAAGAGA AAT-CA-AGA GCGTAAAGAT GAGCC--G-A GCAGCAGCAG 55 CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT TGACTGTTCG AAGCCGGTAG 91578 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||| || | CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGG 115 AAGACAGTAT CATGGAGATT GCTTCTCTTG ACAAGTTCCT TCAAGAGAGG ATTAAGGTTG 91518 | |||||||| ||||||||| |||||||||| |||||||||| |||||||| |||||||||| AGGACAGTAT TATGGAGATT GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAAGGTTG 175 GTGGAAAAGC TGGTGCTCTT GGGGATTCCG TTACTGTTAC TCGTGACAAG AACAAGATCA 91458 |||||||||| |||||| ||| || ||||||| ||||||| || |||||| ||| || || |||| GTGGAAAAGC TGGTGCACTT GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA 235 CCGTCACCTG CAACTCAACT TTTTCCAAGA GGTACTGATT CTATTGCCTC ATTTTCAGTT 91398 ||||||| || |||||| ||| |||||||||| | CCGTCACTTG CAACTCCACT TTTTCCAAGA G......... .......... .......... 266 GTGTTTATTT GAAAAAAAAA TGATTCTAGA AACTAAACTC TACTCGTAGA TCATAAATTA 91338 .......... .......... .......... .......... .......... .......... 266 CTAGCTACAG TCGACTTCTA TTATAGTTTG ATAACGATTA CACTTACCGA TTGACAGTAA 91278 .......... .......... .......... .......... .......... .......... 266 CTTATCGCAG ACCTATTCGA TTATCCAGTG AGTTCTGTGT AGTCATTCAC ACATTAAGCT 91218 .......... .......... .......... .......... .......... .......... 266 TTGACTCAGT TGGTAATCAG ATAAATATAT AGTTAATTTG ATAAGTTTTT GATATTTGAA 91158 .......... .......... .......... .......... .......... .......... 266 TGATTAAATC CGACAAACAG AACCATTTTA GACCTACTCC TGTAGTTAAA TGAACTATTT 91098 .......... .......... .......... .......... .......... .......... 266 ATTTAGGACA TTATTCTCTC TTTTTTGGTG TTTATTTTTG TACTAGAGGA CGGGCTTCGC 91038 .......... .......... .......... .......... .......... .......... 266 ACGTGTATTT TATGTGAATT TTTATAGATA TGTTATAATG ATAAAAATTT CATGGAAATA 90978 .......... .......... .......... .......... .......... .......... 266 TATATGTAAA TTAATGAATA ATATAATGTA ACAATTACAA AATAAGAATA AAGACTTACG 90918 .......... .......... .......... .......... .......... .......... 266 CAATAAAATA TTCATAAAAA AACTAAATTA AGAAGTCTGA TGGTGATAAA AATAAAAGAC 90858 .......... .......... .......... .......... .......... .......... 266 AAAAAAAAGA CAGATTTAAG AATGATCCAA TGTAAACAAT GTTCTTATAA GACTGATGTA 90798 .......... .......... .......... .......... .......... .......... 266 TGTATAGATG AAAAAAATAA GTACATAACT CTCTGAGTTC TTATCGACTC CTTTCATATC 90738 .......... .......... .......... .......... .......... .......... 266 CTATCAAAAT TCAAGAGGTT TCTTCATCTA CTTTAACTAT TGAATGAAAA TGATAGCCTA 90678 .......... .......... .......... .......... .......... .......... 266 GTAATCTTGG TAGGGGTTTC ATGAGATTAA AAAAGTTGAA TTTATATAGA TAGAATAGAA 90618 .......... .......... .......... .......... .......... .......... 266 GGAATATCAA AAGATATATT AAAGTTTTAG TTTAAATATT TGGAGGTTAT GAATATGAAA 90558 .......... .......... .......... .......... .......... .......... 266 AGATGAGAGT TATGAATATT AAGAGTATAA AGTTGAATAA GTAATTAACA AATAATAATA 90498 .......... .......... .......... .......... .......... .......... 266 AATAAATGAA GAATATGAAA AAAGAAGTTA AAATTAGCAA ACCATGTAGA AAGAACAACT 90438 .......... .......... .......... .......... .......... .......... 266 AAAGGTCTTA TCACGTAATT AAGCGTTAAT AAATTTAGAT TTGTGAAGAT AGAGTCATTC 90378 .......... .......... .......... .......... .......... .......... 266 TTTAATAATA ATCGAGAGGA CATTATCAAC GTGTGTCTCC ATTTTGCAGA TTTGCACCCT 90318 .......... .......... .......... .......... .......... .......... 266 TTATATTATT AAATTCGTTA TTTATCATAA AGGATAATAC TTTATCCACA TAAATTATAT 90258 .......... .......... .......... .......... .......... .......... 266 TATTCATGAG AGGGGTTAAG GAAAAAGTTA TGAGAAAGAG GAAAAATATA GCAATTTAGT 90198 .......... .......... .......... .......... .......... .......... 266 AAAGACTTTT TTTTTAAAAA AAAATTATAA TTATTATATA CATATAGATT ATAGATGATA 90138 .......... .......... .......... .......... .......... .......... 266 AATATTAATT AATTGGATAT TTAATTAGAA ATCAATCTTT AGAAGTCTAA AAGTCATTAA 90078 .......... .......... .......... .......... .......... .......... 266 CCTTTTAATT AAATTTATAC AATCAAATAT TTAAATATTT TATAACAATT TAATTTATAG 90018 .......... .......... .......... .......... .......... .......... 266 GAGGGGTAAA ACTGTAATTC AACTTTCAAC TTTTTTTGTT GATGCTTTTA GTAATACATG 89958 .......... .......... .......... .......... .......... .......... 266 ATGAATTAAG AGTGCCCAGA CTTGAAGCAC AGTTCCACTC TGGATTTATC ACTGTTTATT 89898 .......... .......... .......... .......... .......... .......... 266 TATCCAAAAA CACTATCCTG TTTACATTGG GAAATCAGTA GAAACAGAAT GACTAAAACA 89838 .......... .......... .......... .......... .......... .......... 266 GCAGTGTGTT CTAAGTTCGC ATGATCGTTG AAGCCTTTAC TAAGCTTATG GTACAGATAG 89778 .......... .......... .......... .......... .......... .......... 266 TCTATATGCT TTATGATTAA GCAACTATGT CTGGGTCCCA AATTAGAAGT CAGGGTTGGC 89718 .......... .......... .......... .......... .......... .......... 266 TTTTATTGGA GTTTGATTGT TTTTACAACT GACAGTCTGA TATTAACTTA TTCATAGCTT 89658 .......... .......... .......... .......... .......... .......... 266 CTTTTATTTT GGCTCGTCTC TGCTTTACAA AGATTTCTTA TTTGGATAGT GCAACAGCAA 89598 .......... .......... .......... .......... .......... .......... 266 CAACACCATA CCCCATGTAA CCCACAAGTG AGGTCTGGGG AGGGTAGAGA CTCTGCACTA 89538 .......... .......... .......... .......... .......... .......... 266 TCCGTTAAGT GTAAGCATAC CTTCTTGGAT AGTGCAGATA TTCATAAATC GCGCTCTTGC 89478 .......... .......... .......... .......... .......... .......... 266 TAATGATTTT AAAAGGAAGT CGTTTTAACT GTTTATTATA GTTAGAGTTC CCTGCACTGC 89418 .......... .......... .......... .......... .......... .......... 266 AAGTCTAAAA GAAGCTCTCT TCTGTTCAGG ATTGTTATAC TGAACATGAT GAGTTTATAT 89358 .......... .......... .......... .......... .......... .......... 266 CGTTCTGTTG TTTGTTTATC TAATGCATTA TCCTATTTAC ATCGAGAAAC AAAAAAACAA 89298 .......... .......... .......... .......... .......... .......... 266 TTGAAACGAA AATGAAAGCA TAACATCTTG GTGTTCTGGT TTCATCCGTT TTATGTTTCT 89238 .......... .......... .......... .......... .......... .......... 266 AAGCTTGTTT TGGAAGTGAC ATCAACCATT TACTAGCTTC ACCATTCACC TACACATCTT 89178 .......... .......... .......... .......... .......... .......... 266 AGGCTTGAGT GATATTCTAA AGGCTATTTG TAAAAGAAAC TGAGAGTCTA AAACATTATA 89118 .......... .......... .......... .......... .......... .......... 266 TCAATTTACT TTGGGGTAAA TTATGTATGC CCGATTGATG AAAGAAGTTC TTGTGATGTA 89058 .......... .......... .......... .......... .......... .......... 266 GAGTTGTTGC TATGTATTCT ACTCCTACCC CTTCAAAACC AAAAGAACAG AGTGTTAAAA 88998 .......... .......... .......... .......... .......... .......... 266 GTAGTGAAAT CAGGCAACCG AGGCTAGTAA ACAACAGCTC GACTTACAAT CTTCTATTAT 88938 .......... .......... .......... .......... .......... .......... 266 TCAGGTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAATAACGTC AGGGATTGGC 88878 |||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| ....GTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC 322 TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTACGA ATTGCGCTAC TTCAACATTG 88818 |||||||||| |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG 382 CTGAGAATGA AGCAGATGAA GAAGATTAAA CATGACCATT CAAT 88774 | |||||||| |||||||||| |||||||||| |||| | | | |||| CCGAGAATGA AGCAGATGAA GAAGATTAAA CATGTCTAGT CAAT 426 hqPGS_C09HBa0278J12.1-_SGN-E285777+ (91697 91427,88933 88774) ******************************************************************************** EST sequence 329 +strand 470 n (File: SGN-E276642+) 1 TTTAACAGAG TCACCACTTC CATACACTCA CACTAGGCCG TGGACGTCGA GTTTCATCCT 61 CAGAAGAGAA ATACAGAGAG TGTAAAGATG AGCCGAGCAG CAGCAGCAGC AGTGAAGGGC 121 GGGAAGAAGA AGGGGGCAAG CTTCGTCATT GACTGTTCGA AGCCGGTAGA AGACAGTATC 181 ATGGAGATTG CTTCTCTTGA CAAGTTCCTT CAAGAGAGGA TTAAGGTTGG TGGAAAAGCT 241 GGTGCTCTTG GGGATTCCGT TACTGTTACT CGTGACAAGA ACAAGATCAC CGTCACCTGC 301 AACTCAACTT TTTCCAAGAG GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT 361 AACGTCAGGG ATTGGCTTAG GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG 421 CGCTACTTCA ACATTGCTGA GAATGAAGCA GATGAAGAAG ATTAAACATG Predicted gene structure (within gDNA segment 92434 to 88174): Exon 1 91834 91775 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 91774 91687 ( 88 n); Pd: 0.998 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 91686 91427 ( 260 n); cDNA 61 320 ( 260 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 88933 88784 ( 150 n); cDNA 321 470 ( 150 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E276642+ 1.000 470 1.000 C PGS_C09HBa0278J12.1-_SGN-E276642+ (91834 91775,91686 91427,88933 88784) Alignment (genomic DNA sequence = upper lines): TTTAACAGAG TCACCACTTC CATACACTCA CACTAGGCCG TGGACGTCGA GTTTCATCCT 91775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAACAGAG TCACCACTTC CATACACTCA CACTAGGCCG TGGACGTCGA GTTTCATCCT 60 GTACGTATGC TCCTACTCTT TTCTTCTCTG TTTCTCTGAC GATGAGATTT GTTCTTGAGA 91715 .......... .......... .......... .......... .......... .......... 60 TCTGATAATT TTTGCTTTTG AATGCCAGCA GAAGAGAAAT ACAGAGAGTG TAAAGATGAG 91655 || |||||||||| |||||||||| |||||||||| .......... .......... ........CA GAAGAGAAAT ACAGAGAGTG TAAAGATGAG 92 CCGAGCAGCA GCAGCAGCAG TGAAGGGCGG GAAGAAGAAG GGGGCAAGCT TCGTCATTGA 91595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGCAGCA GCAGCAGCAG TGAAGGGCGG GAAGAAGAAG GGGGCAAGCT TCGTCATTGA 152 CTGTTCGAAG CCGGTAGAAG ACAGTATCAT GGAGATTGCT TCTCTTGACA AGTTCCTTCA 91535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCGAAG CCGGTAGAAG ACAGTATCAT GGAGATTGCT TCTCTTGACA AGTTCCTTCA 212 AGAGAGGATT AAGGTTGGTG GAAAAGCTGG TGCTCTTGGG GATTCCGTTA CTGTTACTCG 91475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGGATT AAGGTTGGTG GAAAAGCTGG TGCTCTTGGG GATTCCGTTA CTGTTACTCG 272 TGACAAGAAC AAGATCACCG TCACCTGCAA CTCAACTTTT TCCAAGAGGT ACTGATTCTA 91415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGACAAGAAC AAGATCACCG TCACCTGCAA CTCAACTTTT TCCAAGAG.. .......... 320 TTGCCTCATT TTCAGTTGTG TTTATTTGAA AAAAAAATGA TTCTAGAAAC TAAACTCTAC 91355 .......... .......... .......... .......... .......... .......... 320 TCGTAGATCA TAAATTACTA GCTACAGTCG ACTTCTATTA TAGTTTGATA ACGATTACAC 91295 .......... .......... .......... .......... .......... .......... 320 TTACCGATTG ACAGTAACTT ATCGCAGACC TATTCGATTA TCCAGTGAGT TCTGTGTAGT 91235 .......... .......... .......... .......... .......... .......... 320 CATTCACACA TTAAGCTTTG ACTCAGTTGG TAATCAGATA AATATATAGT TAATTTGATA 91175 .......... .......... .......... .......... .......... .......... 320 AGTTTTTGAT ATTTGAATGA TTAAATCCGA CAAACAGAAC CATTTTAGAC CTACTCCTGT 91115 .......... .......... .......... .......... .......... .......... 320 AGTTAAATGA ACTATTTATT TAGGACATTA TTCTCTCTTT TTTGGTGTTT ATTTTTGTAC 91055 .......... .......... .......... .......... .......... .......... 320 TAGAGGACGG GCTTCGCACG TGTATTTTAT GTGAATTTTT ATAGATATGT TATAATGATA 90995 .......... .......... .......... .......... .......... .......... 320 AAAATTTCAT GGAAATATAT ATGTAAATTA ATGAATAATA TAATGTAACA ATTACAAAAT 90935 .......... .......... .......... .......... .......... .......... 320 AAGAATAAAG ACTTACGCAA TAAAATATTC ATAAAAAAAC TAAATTAAGA AGTCTGATGG 90875 .......... .......... .......... .......... .......... .......... 320 TGATAAAAAT AAAAGACAAA AAAAAGACAG ATTTAAGAAT GATCCAATGT AAACAATGTT 90815 .......... .......... .......... .......... .......... .......... 320 CTTATAAGAC TGATGTATGT ATAGATGAAA AAAATAAGTA CATAACTCTC TGAGTTCTTA 90755 .......... .......... .......... .......... .......... .......... 320 TCGACTCCTT TCATATCCTA TCAAAATTCA AGAGGTTTCT TCATCTACTT TAACTATTGA 90695 .......... .......... .......... .......... .......... .......... 320 ATGAAAATGA TAGCCTAGTA ATCTTGGTAG GGGTTTCATG AGATTAAAAA AGTTGAATTT 90635 .......... .......... .......... .......... .......... .......... 320 ATATAGATAG AATAGAAGGA ATATCAAAAG ATATATTAAA GTTTTAGTTT AAATATTTGG 90575 .......... .......... .......... .......... .......... .......... 320 AGGTTATGAA TATGAAAAGA TGAGAGTTAT GAATATTAAG AGTATAAAGT TGAATAAGTA 90515 .......... .......... .......... .......... .......... .......... 320 ATTAACAAAT AATAATAAAT AAATGAAGAA TATGAAAAAA GAAGTTAAAA TTAGCAAACC 90455 .......... .......... .......... .......... .......... .......... 320 ATGTAGAAAG AACAACTAAA GGTCTTATCA CGTAATTAAG CGTTAATAAA TTTAGATTTG 90395 .......... .......... .......... .......... .......... .......... 320 TGAAGATAGA GTCATTCTTT AATAATAATC GAGAGGACAT TATCAACGTG TGTCTCCATT 90335 .......... .......... .......... .......... .......... .......... 320 TTGCAGATTT GCACCCTTTA TATTATTAAA TTCGTTATTT ATCATAAAGG ATAATACTTT 90275 .......... .......... .......... .......... .......... .......... 320 ATCCACATAA ATTATATTAT TCATGAGAGG GGTTAAGGAA AAAGTTATGA GAAAGAGGAA 90215 .......... .......... .......... .......... .......... .......... 320 AAATATAGCA ATTTAGTAAA GACTTTTTTT TTAAAAAAAA ATTATAATTA TTATATACAT 90155 .......... .......... .......... .......... .......... .......... 320 ATAGATTATA GATGATAAAT ATTAATTAAT TGGATATTTA ATTAGAAATC AATCTTTAGA 90095 .......... .......... .......... .......... .......... .......... 320 AGTCTAAAAG TCATTAACCT TTTAATTAAA TTTATACAAT CAAATATTTA AATATTTTAT 90035 .......... .......... .......... .......... .......... .......... 320 AACAATTTAA TTTATAGGAG GGGTAAAACT GTAATTCAAC TTTCAACTTT TTTTGTTGAT 89975 .......... .......... .......... .......... .......... .......... 320 GCTTTTAGTA ATACATGATG AATTAAGAGT GCCCAGACTT GAAGCACAGT TCCACTCTGG 89915 .......... .......... .......... .......... .......... .......... 320 ATTTATCACT GTTTATTTAT CCAAAAACAC TATCCTGTTT ACATTGGGAA ATCAGTAGAA 89855 .......... .......... .......... .......... .......... .......... 320 ACAGAATGAC TAAAACAGCA GTGTGTTCTA AGTTCGCATG ATCGTTGAAG CCTTTACTAA 89795 .......... .......... .......... .......... .......... .......... 320 GCTTATGGTA CAGATAGTCT ATATGCTTTA TGATTAAGCA ACTATGTCTG GGTCCCAAAT 89735 .......... .......... .......... .......... .......... .......... 320 TAGAAGTCAG GGTTGGCTTT TATTGGAGTT TGATTGTTTT TACAACTGAC AGTCTGATAT 89675 .......... .......... .......... .......... .......... .......... 320 TAACTTATTC ATAGCTTCTT TTATTTTGGC TCGTCTCTGC TTTACAAAGA TTTCTTATTT 89615 .......... .......... .......... .......... .......... .......... 320 GGATAGTGCA ACAGCAACAA CACCATACCC CATGTAACCC ACAAGTGAGG TCTGGGGAGG 89555 .......... .......... .......... .......... .......... .......... 320 GTAGAGACTC TGCACTATCC GTTAAGTGTA AGCATACCTT CTTGGATAGT GCAGATATTC 89495 .......... .......... .......... .......... .......... .......... 320 ATAAATCGCG CTCTTGCTAA TGATTTTAAA AGGAAGTCGT TTTAACTGTT TATTATAGTT 89435 .......... .......... .......... .......... .......... .......... 320 AGAGTTCCCT GCACTGCAAG TCTAAAAGAA GCTCTCTTCT GTTCAGGATT GTTATACTGA 89375 .......... .......... .......... .......... .......... .......... 320 ACATGATGAG TTTATATCGT TCTGTTGTTT GTTTATCTAA TGCATTATCC TATTTACATC 89315 .......... .......... .......... .......... .......... .......... 320 GAGAAACAAA AAAACAATTG AAACGAAAAT GAAAGCATAA CATCTTGGTG TTCTGGTTTC 89255 .......... .......... .......... .......... .......... .......... 320 ATCCGTTTTA TGTTTCTAAG CTTGTTTTGG AAGTGACATC AACCATTTAC TAGCTTCACC 89195 .......... .......... .......... .......... .......... .......... 320 ATTCACCTAC ACATCTTAGG CTTGAGTGAT ATTCTAAAGG CTATTTGTAA AAGAAACTGA 89135 .......... .......... .......... .......... .......... .......... 320 GAGTCTAAAA CATTATATCA ATTTACTTTG GGGTAAATTA TGTATGCCCG ATTGATGAAA 89075 .......... .......... .......... .......... .......... .......... 320 GAAGTTCTTG TGATGTAGAG TTGTTGCTAT GTATTCTACT CCTACCCCTT CAAAACCAAA 89015 .......... .......... .......... .......... .......... .......... 320 AGAACAGAGT GTTAAAAGTA GTGAAATCAG GCAACCGAGG CTAGTAAACA ACAGCTCGAC 88955 .......... .......... .......... .......... .......... .......... 320 TTACAATCTT CTATTATTCA GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA 88895 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA 359 TAACGTCAGG GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG TTTACGAATT 88835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGTCAGG GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG TTTACGAATT 419 GCGCTACTTC AACATTGCTG AGAATGAAGC AGATGAAGAA GATTAAACAT G 88784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GCGCTACTTC AACATTGCTG AGAATGAAGC AGATGAAGAA GATTAAACAT G 470 hqPGS_C09HBa0278J12.1-_SGN-E276642+ (91834 91775,91686 91427,88933 88784) ******************************************************************************** EST sequence 247 +strand 462 n (File: SGN-E338914+) 1 CCTAATTTAA CAGAGTCACG CACTTCCATA CACTCACACT AGGCCGTGGA CGTCGAGTTT 61 CATCCTAAGA GAAATACAGA GAGTGTAAAG ATGAGCCGAG CAGCAGCAGC AGCAGTGAAG 121 GGCGGGAAGA AGAAGGGGGC AAGCTTCGTC ATTGACTGTT CGAAGCCGGT AGAAGACAGT 181 ATCATGGAGA TTGCTTCTCT TGACAAGTTC CTTCAAGAGA GGATTAAGGT TGGTGGAAAA 241 GCTGGTGCTC TTGGGGATTC CGTTACTGTT ACTCGTGACA AGAACAAGAT CACCGTCACC 301 TGCAACTCAA CTTTTTCCAA GAGGTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA 361 AATAACGTCA GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTACGAA 421 TTGCGCTACT TCAACATTGG CTGAGAATGA AGCAGATGAA GA Predicted gene structure (within gDNA segment 92439 to 88186): Exon 1 91839 91775 ( 65 n); cDNA 1 66 ( 66 n); score: 0.962 Intron 1 91774 91684 ( 91 n); Pd: 0.998 (s: 0.95), Pa: 0.809 (s: 1.00) Exon 2 91683 91427 ( 257 n); cDNA 67 323 ( 257 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 88933 88796 ( 138 n); cDNA 324 462 ( 139 n); score: 0.982 MATCH C09HBa0278J12.1- SGN-E338914+ 0.989 460 0.996 C PGS_C09HBa0278J12.1-_SGN-E338914+ (91839 91775,91683 91427,88933 88796) Alignment (genomic DNA sequence = upper lines): CCTAATTTAA CAGAGTCAC- CACTTCCATA CACTCACACT AGGCCGTGGA CGTCGAGTTT 91781 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAATTTAA CAGAGTCACG CACTTCCATA CACTCACACT AGGCCGTGGA CGTCGAGTTT 60 CATCCTGTAC GTATGCTCCT ACTCTTTTCT TCTCTGTTTC TCTGACGATG AGATTTGTTC 91721 |||||| CATCCT.... .......... .......... .......... .......... .......... 66 TTGAGATCTG ATAATTTTTG CTTTTGAATG CCAGCAGAAG AGAAATACAG AGAGTGTAAA 91661 ||| |||||||||| |||||||||| .......... .......... .......... .......AAG AGAAATACAG AGAGTGTAAA 89 GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT 91601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT 149 CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG ATTGCTTCTC TTGACAAGTT 91541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG ATTGCTTCTC TTGACAAGTT 209 CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT CTTGGGGATT CCGTTACTGT 91481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT CTTGGGGATT CCGTTACTGT 269 TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA ACTTTTTCCA AGAGGTACTG 91421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA ACTTTTTCCA AGAG...... 323 ATTCTATTGC CTCATTTTCA GTTGTGTTTA TTTGAAAAAA AAATGATTCT AGAAACTAAA 91361 .......... .......... .......... .......... .......... .......... 323 CTCTACTCGT AGATCATAAA TTACTAGCTA CAGTCGACTT CTATTATAGT TTGATAACGA 91301 .......... .......... .......... .......... .......... .......... 323 TTACACTTAC CGATTGACAG TAACTTATCG CAGACCTATT CGATTATCCA GTGAGTTCTG 91241 .......... .......... .......... .......... .......... .......... 323 TGTAGTCATT CACACATTAA GCTTTGACTC AGTTGGTAAT CAGATAAATA TATAGTTAAT 91181 .......... .......... .......... .......... .......... .......... 323 TTGATAAGTT TTTGATATTT GAATGATTAA ATCCGACAAA CAGAACCATT TTAGACCTAC 91121 .......... .......... .......... .......... .......... .......... 323 TCCTGTAGTT AAATGAACTA TTTATTTAGG ACATTATTCT CTCTTTTTTG GTGTTTATTT 91061 .......... .......... .......... .......... .......... .......... 323 TTGTACTAGA GGACGGGCTT CGCACGTGTA TTTTATGTGA ATTTTTATAG ATATGTTATA 91001 .......... .......... .......... .......... .......... .......... 323 ATGATAAAAA TTTCATGGAA ATATATATGT AAATTAATGA ATAATATAAT GTAACAATTA 90941 .......... .......... .......... .......... .......... .......... 323 CAAAATAAGA ATAAAGACTT ACGCAATAAA ATATTCATAA AAAAACTAAA TTAAGAAGTC 90881 .......... .......... .......... .......... .......... .......... 323 TGATGGTGAT AAAAATAAAA GACAAAAAAA AGACAGATTT AAGAATGATC CAATGTAAAC 90821 .......... .......... .......... .......... .......... .......... 323 AATGTTCTTA TAAGACTGAT GTATGTATAG ATGAAAAAAA TAAGTACATA ACTCTCTGAG 90761 .......... .......... .......... .......... .......... .......... 323 TTCTTATCGA CTCCTTTCAT ATCCTATCAA AATTCAAGAG GTTTCTTCAT CTACTTTAAC 90701 .......... .......... .......... .......... .......... .......... 323 TATTGAATGA AAATGATAGC CTAGTAATCT TGGTAGGGGT TTCATGAGAT TAAAAAAGTT 90641 .......... .......... .......... .......... .......... .......... 323 GAATTTATAT AGATAGAATA GAAGGAATAT CAAAAGATAT ATTAAAGTTT TAGTTTAAAT 90581 .......... .......... .......... .......... .......... .......... 323 ATTTGGAGGT TATGAATATG AAAAGATGAG AGTTATGAAT ATTAAGAGTA TAAAGTTGAA 90521 .......... .......... .......... .......... .......... .......... 323 TAAGTAATTA ACAAATAATA ATAAATAAAT GAAGAATATG AAAAAAGAAG TTAAAATTAG 90461 .......... .......... .......... .......... .......... .......... 323 CAAACCATGT AGAAAGAACA ACTAAAGGTC TTATCACGTA ATTAAGCGTT AATAAATTTA 90401 .......... .......... .......... .......... .......... .......... 323 GATTTGTGAA GATAGAGTCA TTCTTTAATA ATAATCGAGA GGACATTATC AACGTGTGTC 90341 .......... .......... .......... .......... .......... .......... 323 TCCATTTTGC AGATTTGCAC CCTTTATATT ATTAAATTCG TTATTTATCA TAAAGGATAA 90281 .......... .......... .......... .......... .......... .......... 323 TACTTTATCC ACATAAATTA TATTATTCAT GAGAGGGGTT AAGGAAAAAG TTATGAGAAA 90221 .......... .......... .......... .......... .......... .......... 323 GAGGAAAAAT ATAGCAATTT AGTAAAGACT TTTTTTTTAA AAAAAAATTA TAATTATTAT 90161 .......... .......... .......... .......... .......... .......... 323 ATACATATAG ATTATAGATG ATAAATATTA ATTAATTGGA TATTTAATTA GAAATCAATC 90101 .......... .......... .......... .......... .......... .......... 323 TTTAGAAGTC TAAAAGTCAT TAACCTTTTA ATTAAATTTA TACAATCAAA TATTTAAATA 90041 .......... .......... .......... .......... .......... .......... 323 TTTTATAACA ATTTAATTTA TAGGAGGGGT AAAACTGTAA TTCAACTTTC AACTTTTTTT 89981 .......... .......... .......... .......... .......... .......... 323 GTTGATGCTT TTAGTAATAC ATGATGAATT AAGAGTGCCC AGACTTGAAG CACAGTTCCA 89921 .......... .......... .......... .......... .......... .......... 323 CTCTGGATTT ATCACTGTTT ATTTATCCAA AAACACTATC CTGTTTACAT TGGGAAATCA 89861 .......... .......... .......... .......... .......... .......... 323 GTAGAAACAG AATGACTAAA ACAGCAGTGT GTTCTAAGTT CGCATGATCG TTGAAGCCTT 89801 .......... .......... .......... .......... .......... .......... 323 TACTAAGCTT ATGGTACAGA TAGTCTATAT GCTTTATGAT TAAGCAACTA TGTCTGGGTC 89741 .......... .......... .......... .......... .......... .......... 323 CCAAATTAGA AGTCAGGGTT GGCTTTTATT GGAGTTTGAT TGTTTTTACA ACTGACAGTC 89681 .......... .......... .......... .......... .......... .......... 323 TGATATTAAC TTATTCATAG CTTCTTTTAT TTTGGCTCGT CTCTGCTTTA CAAAGATTTC 89621 .......... .......... .......... .......... .......... .......... 323 TTATTTGGAT AGTGCAACAG CAACAACACC ATACCCCATG TAACCCACAA GTGAGGTCTG 89561 .......... .......... .......... .......... .......... .......... 323 GGGAGGGTAG AGACTCTGCA CTATCCGTTA AGTGTAAGCA TACCTTCTTG GATAGTGCAG 89501 .......... .......... .......... .......... .......... .......... 323 ATATTCATAA ATCGCGCTCT TGCTAATGAT TTTAAAAGGA AGTCGTTTTA ACTGTTTATT 89441 .......... .......... .......... .......... .......... .......... 323 ATAGTTAGAG TTCCCTGCAC TGCAAGTCTA AAAGAAGCTC TCTTCTGTTC AGGATTGTTA 89381 .......... .......... .......... .......... .......... .......... 323 TACTGAACAT GATGAGTTTA TATCGTTCTG TTGTTTGTTT ATCTAATGCA TTATCCTATT 89321 .......... .......... .......... .......... .......... .......... 323 TACATCGAGA AACAAAAAAA CAATTGAAAC GAAAATGAAA GCATAACATC TTGGTGTTCT 89261 .......... .......... .......... .......... .......... .......... 323 GGTTTCATCC GTTTTATGTT TCTAAGCTTG TTTTGGAAGT GACATCAACC ATTTACTAGC 89201 .......... .......... .......... .......... .......... .......... 323 TTCACCATTC ACCTACACAT CTTAGGCTTG AGTGATATTC TAAAGGCTAT TTGTAAAAGA 89141 .......... .......... .......... .......... .......... .......... 323 AACTGAGAGT CTAAAACATT ATATCAATTT ACTTTGGGGT AAATTATGTA TGCCCGATTG 89081 .......... .......... .......... .......... .......... .......... 323 ATGAAAGAAG TTCTTGTGAT GTAGAGTTGT TGCTATGTAT TCTACTCCTA CCCCTTCAAA 89021 .......... .......... .......... .......... .......... .......... 323 ACCAAAAGAA CAGAGTGTTA AAAGTAGTGA AATCAGGCAA CCGAGGCTAG TAAACAACAG 88961 .......... .......... .......... .......... .......... .......... 323 CTCGACTTAC AATCTTCTAT TATTCAGGTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA 88901 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA 356 GAAAAATAAC GTCAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA 88841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATAAC GTCAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA 416 CGAATTGCGC TACTTCAACA TT-GCTGAGA ATGAAGCAGA TGAAGA 88796 |||||||||| |||||||||| || ||||||| |||||||||| |||||| CGAATTGCGC TACTTCAACA TTGGCTGAGA ATGAAGCAGA TGAAGA 462 hqPGS_C09HBa0278J12.1-_SGN-E338914+ (91839 91775,91683 91427,88933 88796) ******************************************************************************** EST sequence 215 +strand 472 n (File: SGN-E551822+) 1 GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 61 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAACAACG TTAGGGATTG GCTTAGGGTG 121 ATTGCTTCCA ACAAGGACAG GAATGTTTAT GAGTTGCGCT ACTTCAACAT TGCCGAGAAT 181 GAAGCAGATG AAGAAGATTA AACATGTCTA GTCAATGTCC CTTTTATCTT CTTATTTTGA 241 ACCTTATATC ATCTGTTTGA GTTATTAATG AGCCGTATCT TCTCATTTCC AGATTATTGA 301 TTTTTTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA TACACTTTGG TTTGTTCATC 361 TCTGGGGTCA AGTTTTTGCA AGGCATCAAT TTCTCTGTAT TGCCTTTTCC CTCTTGATGA 421 TCACATGTAA TTTATAGAGT TTATCTTTAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 90966 to 85514): Exon 1 88933 88567 ( 367 n); cDNA 57 419 ( 363 n); score: 0.794 PPA cDNA 449 472 MATCH C09HBa0278J12.1- SGN-E551822+ 0.794 367 0.778 C PGS_C09HBa0278J12.1-_SGN-E551822+ (88933 88567) Alignment (genomic DNA sequence = upper lines): GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT AACGTCAGGG ATTGGCTTAG 88874 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG 116 GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG CGCTACTTCA ACATTGCTGA 88814 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| ||||||| || GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA 176 GAATGAAGCA GATGAAGAAG ATTAAACATG ACCATTCAAT GTCTCTCTTT ATCTTCTTTC 88754 |||||||||| |||||||||| |||||||||| | | ||||| ||| || ||| |||||| || GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCT-TTT ATCTTC-TTA 234 TTTAGTCGGC CTTCACTTTT TGATCCTTGT ATCA-TCACT AATGAATCCT GTCTTCTCAT 88695 ||| | | ||| | | | || | ||| | | | | | ||||| | | ||||||||| TTT--TGAAC CTT-A---TA TCAT-C-TGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT 286 TTCTAGATT- TTGTTTTTGC AGTTTGCTTA TCAGTAAAAG AAAACATTAC ATCGAT--AC 88638 ||| ||||| ||| |||| || |||| |||||||||| ||||| |||| | ||| || TTCCAGATTA TTGATTTT-T TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC 345 TTTGGTTTGT CTATCTTTGG GGATAA--TT ATG-AAAATG TCAATTTATC TGTATTGCCT 88581 |||||||||| |||| ||| || || || || || ||||||| || |||||||||| TTTGGTTTGT TCATCTCTGG GGTCAAGTTT TTGCAAGGCA TCAATTTCTC TGTATTGCCT 405 TTCTCCTCTG GATG 88567 || ||||| |||| TTTCCCTCTT GATG 419 hqPGS_C09HBa0278J12.1-_SGN-E551822+ (88933 88567) ******************************************************************************** EST sequence 250 +strand 471 n (File: SGN-E553003+) 1 GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 61 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAACAACG TTAGGGATTG GCTTAGGGTG 121 ATTGCTTCCA ACAAGGACAG GAATGTTTAT GAGTTGCGCT ACTTCAACAT TGCCGAGAAT 181 GAAGCAGATG AAGAAGATTA AACATGTCTA GTCAATGTCC CTTTTATCTT CTTATTTTGA 241 ACCTTATATC ATCTGTTTGA GTTATTAATG AGCCGTATCT TCTCATTTCC AGATTATTGA 301 TTTTTTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA TACACTTTGG TTTGTTCATC 361 TCTGGGGTCA AGTTTTTGCA AGGCATCAAT TTCTCTGTAT TGCCTTTTCC CTCTTGATGA 421 TCACATGTAA TTTATAGAGT TTATCTTTAA AAAAAAAAAA AACAAAAAAC A Predicted gene structure (within gDNA segment 90966 to 85524): Exon 1 88933 88567 ( 367 n); cDNA 57 419 ( 363 n); score: 0.794 PPA cDNA 449 469 MATCH C09HBa0278J12.1- SGN-E553003+ 0.794 367 0.779 C PGS_C09HBa0278J12.1-_SGN-E553003+ (88933 88567) Alignment (genomic DNA sequence = upper lines): GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT AACGTCAGGG ATTGGCTTAG 88874 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG 116 GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG CGCTACTTCA ACATTGCTGA 88814 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| ||||||| || GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA 176 GAATGAAGCA GATGAAGAAG ATTAAACATG ACCATTCAAT GTCTCTCTTT ATCTTCTTTC 88754 |||||||||| |||||||||| |||||||||| | | ||||| ||| || ||| |||||| || GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCT-TTT ATCTTC-TTA 234 TTTAGTCGGC CTTCACTTTT TGATCCTTGT ATCA-TCACT AATGAATCCT GTCTTCTCAT 88695 ||| | | ||| | | | || | ||| | | | | | ||||| | | ||||||||| TTT--TGAAC CTT-A---TA TCAT-C-TGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT 286 TTCTAGATT- TTGTTTTTGC AGTTTGCTTA TCAGTAAAAG AAAACATTAC ATCGAT--AC 88638 ||| ||||| ||| |||| || |||| |||||||||| ||||| |||| | ||| || TTCCAGATTA TTGATTTT-T TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC 345 TTTGGTTTGT CTATCTTTGG GGATAA--TT ATG-AAAATG TCAATTTATC TGTATTGCCT 88581 |||||||||| |||| ||| || || || || || ||||||| || |||||||||| TTTGGTTTGT TCATCTCTGG GGTCAAGTTT TTGCAAGGCA TCAATTTCTC TGTATTGCCT 405 TTCTCCTCTG GATG 88567 || ||||| |||| TTTCCCTCTT GATG 419 hqPGS_C09HBa0278J12.1-_SGN-E553003+ (88933 88567) ******************************************************************************** EST sequence 203 +strand 432 n (File: SGN-E352396+) 1 TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT TTTTCCAAGA 61 GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA CAACGTTAGG GATTGGCTTA 121 GGGTGATTGC TTCCAACAAG GACAGGAATG TTTATGAGTT GCGCTACTTC AACATTGCCG 181 AGAATGAAGC AGATGAAGAA GATTAAACAT GTCTAGTCAA TGTCCCTTTT ATCTTCTTAT 241 TTTGAACCTT ATATCATCTG TTTGAGTTAT TAATGAGCCG TATCTTCTCA TTTCCAGATT 301 ATTGATTTTT TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC TTTGGTTTGT 361 TCATCTCTGG GGTCAAGTTT TTGCAAGGCA TCAATTTCTC TGTATTGCCT TTTCCCTCTT 421 GAAAAAAAAA AA Predicted gene structure (within gDNA segment 91016 to 85964): Exon 1 88933 88616 ( 318 n); cDNA 62 372 ( 311 n); score: 0.821 PPA cDNA 422 432 MATCH C09HBa0278J12.1- SGN-E352396+ 0.821 318 0.736 C PGS_C09HBa0278J12.1-_SGN-E352396+ (88933 88616) Alignment (genomic DNA sequence = upper lines): GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT AACGTCAGGG ATTGGCTTAG 88874 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG 121 GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG CGCTACTTCA ACATTGCTGA 88814 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| ||||||| || GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA 181 GAATGAAGCA GATGAAGAAG ATTAAACATG ACCATTCAAT GTCTCTCTTT ATCTTCTTTC 88754 |||||||||| |||||||||| |||||||||| | | ||||| ||| || ||| |||||| || GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCT-TTT ATCTTC-TTA 239 TTTAGTCGGC CTTCACTTTT TGATCCTTGT ATCA-TCACT AATGAATCCT GTCTTCTCAT 88695 ||| | | ||| | | | || | ||| | | | | | ||||| | | ||||||||| TTT--TGAAC CTT-A---TA TCAT-C-TGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT 291 TTCTAGATT- TTGTTTTTGC AGTTTGCTTA TCAGTAAAAG AAAACATTAC ATCGAT--AC 88638 ||| ||||| ||| |||| || |||| |||||||||| ||||| |||| | ||| || TTCCAGATTA TTGATTTT-T TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC 350 TTTGGTTTGT CTATCTTTGG GG 88616 |||||||||| |||| ||| || TTTGGTTTGT TCATCTCTGG GG 372 hqPGS_C09HBa0278J12.1-_SGN-E352396+ (88933 88616) ******************************************************************************** EST sequence 130 -strand 388 n (File: SGN-E219375-) 1 CCGTTACTGT CACTCGTGAT AAGAATAAAA TCAACCGTCA CTTGCAACTC CACTTTTTCC 61 AAGAGGTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 121 CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 181 GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC 241 TTATTTTGAA CCTTATATCA TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA 301 GATTATTGAT TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACTTTGAT ACACTTTGGT 361 TTGTTAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 90175 to 86454): Exon 1 88933 88646 ( 288 n); cDNA 66 344 ( 279 n); score: 0.835 PPA cDNA 366 388 MATCH C09HBa0278J12.1- SGN-E219375- 0.835 288 0.742 C PGS_C09HBa0278J12.1-_SGN-E219375- (88933 88646) Alignment (genomic DNA sequence = upper lines): GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT AACGTCAGGG ATTGGCTTAG 88874 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG 125 GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG CGCTACTTCA ACATTGCTGA 88814 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| ||||||| || GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA 185 GAATGAAGCA GATGAAGAAG ATTAAACATG ACCATTCAAT GTCTCTCTTT ATCTTCTTTC 88754 |||||||||| |||||||||| |||||||||| | | ||||| ||| || ||| |||||| || GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCT-TTT ATCTTC-TTA 243 TTTAGTCGGC CTTCACTTTT TGATCCTTGT ATCA-TCACT AATGAATCCT GTCTTCTCAT 88695 ||| | | ||| | | | || | ||| | | | | | ||||| | | ||||||||| TTT--TGAAC CTT-A---TA TCAT-C-TGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT 295 TTCTAGATTT TGTTTTTGCA GTTTGCTTAT CAGTAAAAGA AAACATTAC 88646 ||| ||||| | ||| || ||||| |||||||||| |||| |||| TTCCAGATTA TTGATTTTTT GTCCCCTTAT CAGTAAAAGA AAACGTTAC 344 hqPGS_C09HBa0278J12.1-_SGN-E219375- (88933 88646) ******************************************************************************** EST sequence 183 +strand 684 n (File: SGN-E371571+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT GATGCTAGCT 541 CACCAGCAAT TCCACCAGAG TATGTTGGAA TTCCAATGCG ACCTCATTCC TCTAAACCAG 601 ATCATTCGGC AACTGATCAA CACCCACCAC CTGCTGTTAT ACACCCACCC CCTGCAACCC 661 CCACGGCATG CAGTGGAATG GATC Predicted gene structure (within gDNA segment 90870 to 84512): Exon 1 90173 89956 ( 218 n); cDNA 8 223 ( 216 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E371571+ 0.904 218 0.319 C PGS_C09HBa0278J12.1-_SGN-E371571+ (90173 89956) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATTAATT GGATATTTAA 90114 || ||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGAAATCA ATCTTTAGAA GTCTAAAAGT CATTAACCTT TTAATTAAAT TTATACAATC 90054 |||| ||| | ||||| ||| ||||||||| |||||| | | |||||||||| ||||| ||| TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAA-CAT TTAATTAAAT TTATATAATT 126 AAATATTTAA ATATTTTATA ACAATTTAAT TTATAGGAGG GGTAAAACTG TAATTCAACT 89994 |||||||||| |||||||||| |||||||||| | |||| ||| |||||| | |||||||||| AAATATTTAA ATATTTTATA ACAATTTAAT TAATAGAAGG AGTAAAATCG TAATTCAACT 186 TTCAACTTTT TTTGTTGATG CTTTTAGTAA TACATGAT 89956 |||||| ||| |||||| ||| |||||||||| || ||||| TTCAAC-TTT TTTGTTCATG CTTTTAGTAA TATATGAT 223 hqPGS_C09HBa0278J12.1-_SGN-E371571+ (90173 89956) ******************************************************************************** EST sequence 189 +strand 599 n (File: SGN-E370504+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT GATGCTAGCT 541 CACCAGCAAT TCCACCAGAG TATGTTGGAA TTCCAATGCG ACCTCATTCC TCTAAACCA Predicted gene structure (within gDNA segment 90870 to 85362): Exon 1 90173 89956 ( 218 n); cDNA 8 223 ( 216 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E370504+ 0.904 218 0.364 C PGS_C09HBa0278J12.1-_SGN-E370504+ (90173 89956) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATTAATT GGATATTTAA 90114 || ||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGAAATCA ATCTTTAGAA GTCTAAAAGT CATTAACCTT TTAATTAAAT TTATACAATC 90054 |||| ||| | ||||| ||| ||||||||| |||||| | | |||||||||| ||||| ||| TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAA-CAT TTAATTAAAT TTATATAATT 126 AAATATTTAA ATATTTTATA ACAATTTAAT TTATAGGAGG GGTAAAACTG TAATTCAACT 89994 |||||||||| |||||||||| |||||||||| | |||| ||| |||||| | |||||||||| AAATATTTAA ATATTTTATA ACAATTTAAT TAATAGAAGG AGTAAAATCG TAATTCAACT 186 TTCAACTTTT TTTGTTGATG CTTTTAGTAA TACATGAT 89956 |||||| ||| |||||| ||| |||||||||| || ||||| TTCAAC-TTT TTTGTTCATG CTTTTAGTAA TATATGAT 223 hqPGS_C09HBa0278J12.1-_SGN-E370504+ (90173 89956) ******************************************************************************** EST sequence 199 +strand 530 n (File: SGN-E280629+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT Predicted gene structure (within gDNA segment 90870 to 86052): Exon 1 90173 89956 ( 218 n); cDNA 8 223 ( 216 n); score: 0.904 MATCH C09HBa0278J12.1- SGN-E280629+ 0.904 218 0.411 C PGS_C09HBa0278J12.1-_SGN-E280629+ (90173 89956) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATTAATT GGATATTTAA 90114 || ||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGAAATCA ATCTTTAGAA GTCTAAAAGT CATTAACCTT TTAATTAAAT TTATACAATC 90054 |||| ||| | ||||| ||| ||||||||| |||||| | | |||||||||| ||||| ||| TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAA-CAT TTAATTAAAT TTATATAATT 126 AAATATTTAA ATATTTTATA ACAATTTAAT TTATAGGAGG GGTAAAACTG TAATTCAACT 89994 |||||||||| |||||||||| |||||||||| | |||| ||| |||||| | |||||||||| AAATATTTAA ATATTTTATA ACAATTTAAT TAATAGAAGG AGTAAAATCG TAATTCAACT 186 TTCAACTTTT TTTGTTGATG CTTTTAGTAA TACATGAT 89956 |||||| ||| |||||| ||| |||||||||| || ||||| TTCAAC-TTT TTTGTTCATG CTTTTAGTAA TATATGAT 223 hqPGS_C09HBa0278J12.1-_SGN-E280629+ (90173 89956) ******************************************************************************** EST sequence 450 +strand 523 n (File: SGN-E391217+) 1 TTTTTTTTTT GTAATTATTA TATACATATA GATTATAGAT GATAAATATT AATAGATTAG 61 ATATTTAATT AGGAATTAAT CTTAGGAATT CTAAAAGTCA TTAACATTTA ATTAAATTTA 121 TATAATTAAA TATTTAAATA TTTTATAACA ATTTAATTAA TAGAAGGAGT AAAATCGTAA 181 TTCAACTTTC AACTTTTTTG TTCATGCTTT TAGTAATATA TGATTCTAAG CTGATTCTTA 241 GGGATTTAGA TTTGTACTTA CCTAAGTTAG TATTTTCTTT ACTTGTATTT AAATCATTGT 301 CTTCTTTGGA TAATACACAT TGAAATTACT CCATACTTCT GGTAGATTTT AAAAACCATG 361 ATTCACAAAA CATTCTCTTT TTTATTCATA GCCATTTTTT TCTTAATTTT TTGTTTATCC 421 TCAACGGCGT CCTGTACAAG ATTATTACAA GCACGTAGGG CTATTATGGC TGATGATGAT 481 AATGGTGATT ATAATCAGGA TAATAATAAT AATAATGATG ATG Predicted gene structure (within gDNA segment 90880 to 84932): Exon 1 90170 89956 ( 215 n); cDNA 12 224 ( 213 n); score: 0.907 PPA cDNA 10 1 MATCH C09HBa0278J12.1- SGN-E391217+ 0.907 215 0.411 C PGS_C09HBa0278J12.1-_SGN-E391217+ (90170 89956) Alignment (genomic DNA sequence = upper lines): TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATTAATTGGA TATTTAATTA 90111 |||||||||| |||||||||| |||||||||| |||||||||| || ||| || |||||||||| TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA TATTTAATTA 71 GAAATCAATC TTTAGAAGTC TAAAAGTCAT TAACCTTTTA ATTAAATTTA TACAATCAAA 90051 | ||| |||| || ||| || |||||||||| ||| | |||| |||||||||| || ||| ||| GGAATTAATC TTAGGAATTC TAAAAGTCAT TAA-CATTTA ATTAAATTTA TATAATTAAA 130 TATTTAAATA TTTTATAACA ATTTAATTTA TAGGAGGGGT AAAACTGTAA TTCAACTTTC 89991 |||||||||| |||||||||| |||||||| | ||| ||| || |||| |||| |||||||||| TATTTAAATA TTTTATAACA ATTTAATTAA TAGAAGGAGT AAAATCGTAA TTCAACTTTC 190 AACTTTTTTT GTTGATGCTT TTAGTAATAC ATGAT 89956 ||| |||||| ||| |||||| ||||||||| ||||| AAC-TTTTTT GTTCATGCTT TTAGTAATAT ATGAT 224 hqPGS_C09HBa0278J12.1-_SGN-E391217+ (90170 89956) ******************************************************************************** EST sequence 255 +strand 732 n (File: SGN-E317264+) 1 AGAACTAGTC TCGAGTTTTT TTTTTTTTTT TTGTGGTTTT AACTTAAAGT TATATCAAAT 61 ATATTAAAAT GTCTTTTAAT CTTGTGATTT TAAATATGTC ACGTGAAAAA TTAAAATTAA 121 AATATTATAA AAGAAAAAAA AAATTAAACA AACTGAAAAA AAATAGAATT AACGGAGAGA 181 GTATATATCA AAGTTATTGG ACAAAATTTT GATGAGCTAA TGCTTAACAA TTAACACAAG 241 AACAAGTTTT TAATTATTCT TTCATGAAGC ACTGTTATAT ATACATGTAT ATATATACAT 301 AGACATTATT CTTATAAGAT TGATGTATAA ATAGGTGAAA AATAAGTACA AAATTAGTAC 361 ATAACTCTCT AAGTTCTCAC CGACTCCTTT CATATCGTAT TAAAATTTAA GAGTCTTCAT 421 CATCTACTTT TACTATAGAA TAAAAATGAT AGCCTAATAA TCTTGCTAGG GGTTTTATGA 481 GATAAAAAAG TTTAATTTAT ATAAATAGAA AAGAAGGAAT GTCCAAAGAT ATCTTAAAGT 541 TTTAGTTTAA ATATTTAGAA GGTATGAATA TGAAAAGATG AGAGTATGAA TATTAAGAGT 601 ATTAAAGTTT AATAAGTAAT CAGAAAATAA TAATAAATAA ATGAACAATA TGAAAAAGAA 661 ATTAAAGTTA CCAAACCACG TAGAAAGAAC AACTAAAGTT CTTATCATGT AATTGAGCAT 721 TAATTGATTA AA Predicted gene structure (within gDNA segment 100129 to 88620): Exon 1 99257 99202 ( 56 n); cDNA 275 330 ( 56 n); score: 0.696 Intron 1 99201 91933 (7269 n); Pd: 0.000 (s: 0.66), Pa: 0.977 (s: 0) Exon 2 91932 91920 ( 13 n); cDNA 331 343 ( 13 n); score: 0.769 Intron 2 91919 90791 (1129 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 90790 90403 ( 388 n); cDNA 344 729 ( 386 n); score: 0.875 PPA cDNA 34 16 MATCH C09HBa0278J12.1- SGN-E317264+ 0.852 457 0.624 C PGS_C09HBa0278J12.1-_SGN-E317264+ (99257 99202,91932 91920,90790 90403) Alignment (genomic DNA sequence = upper lines): TTATATATAT ATATATATAT ATATATATAT AAAATTGAAA GATAATTAAT ACAAAAATGA 99198 ||||||||| || ||||||| ||| ||| | | ||| | | ||| || | || TTATATATAC ATGTATATAT ATACATAGAC ATTATTCTTA TAAGATTGAT GTATAA.... 330 TAAGTTTATT TTATTATTTT TTAATATAAT AAGTTTATTA TTTTAAATAA TACTTAATAA 99138 .......... .......... .......... .......... .......... .......... 330 TAAAAATGAA ACAAATATAA CATATATTAT ATTTTAAATT AAACAAGTTA AAAAATATAA 99078 .......... .......... .......... .......... .......... .......... 330 TTATAAATAA ACAAATAAAA ATAAACGAAG AAAATTAGTT ATATAATGTA ACCCAGAATA 99018 .......... .......... .......... .......... .......... .......... 330 TATATATATA TATATAGATG GACATATTTG TTTTCTTTGT GTCTTGGATG TCCAACGTAT 98958 .......... .......... .......... .......... .......... .......... 330 ATAGAATGGA CATCTTCTTT TCTTTCCTTT AGTTATTTTT TACTAGAATT ATTGAAAATA 98898 .......... .......... .......... .......... .......... .......... 330 TAATTTTTTG ATAATTCAGT TATTTGGGTT TGAGATTGTT ATATTAAAGG TCTTAAGTTT 98838 .......... .......... .......... .......... .......... .......... 330 GAAAATTTCT TAAGTAAGAA ATTTATCTTT TATATTGAGT TTATTGTACA TGAGCAAAAA 98778 .......... .......... .......... .......... .......... .......... 330 TTTTAATCCG TATACATCTA AATGAAAACA TATCAAAAAT ATATAAATTA TATTTAGACT 98718 .......... .......... .......... .......... .......... .......... 330 ATATTAAAAA TAAATTATTA TCAAAATATG TGATATAGTG AACAAATTGT CCCTTTTGTA 98658 .......... .......... .......... .......... .......... .......... 330 ATTAAAGGTC TTTGATGTAT ATAAATTTCT TTGGTAGAAA GTAAAAATCT AAAATTATAA 98598 .......... .......... .......... .......... .......... .......... 330 ATTTATTTTA ATGACCTTAT CTTCCTCCAA TTTGTCTTTC CCATCTTTAT CACGAATCCC 98538 .......... .......... .......... .......... .......... .......... 330 AATGTTTTGT ATATTTAATT TTATCTATTA ATTTTGCCCA TTCTTTTGCT TATCCATTTA 98478 .......... .......... .......... .......... .......... .......... 330 ATATGCGACA TCAACTAATT TAGCCATTTC CCCATGTGTG CATTCCATTC CACCGGCCAC 98418 .......... .......... .......... .......... .......... .......... 330 CCTTTTAAAA AAAAGAAATT GTTTATACTC GTAAGTTTAG AATATATATA TTGCGAAGAT 98358 .......... .......... .......... .......... .......... .......... 330 AAAGATATTG AGTAGAGTCG TCAATATGGA TTTATATTTG TTGGGTTTAA CTGAATTAAT 98298 .......... .......... .......... .......... .......... .......... 330 TTGAAATTTA TTAGGGTTGA ATTATGATTT TTGGAGTTCA TTTGAGAAAA GGATTTTTTT 98238 .......... .......... .......... .......... .......... .......... 330 AGCCCGACTT GAATAAGTCT GCTTTTGTGG AGCTTGAAAA ATATTGATAG GGCCGGCTCG 98178 .......... .......... .......... .......... .......... .......... 330 TGGATCAATA AAAATAAATT AAAAATATAA TATAATATTA AATTTTAAAA TTAAGAAAGT 98118 .......... .......... .......... .......... .......... .......... 330 CCAAACTCAA AACAATTAGA TTAATATTTC TATTTAGATA TTTATATTTT TACTTTGAAA 98058 .......... .......... .......... .......... .......... .......... 330 GAAAACTTAA TAAGTATTAT AAAAATAATT TTAATTGTGA ATTTGATTAA AAAGTAGTAA 97998 .......... .......... .......... .......... .......... .......... 330 CATTAACATC ATGTAATATT ATTTTTGTCG ATATTTATGA TATATTTTTA AATTATAATT 97938 .......... .......... .......... .......... .......... .......... 330 TACAATTTAA TTTAAAAATT TTAAATTAAT ATGATTTCTA AAAAAGTGGA CTGGCCCAAC 97878 .......... .......... .......... .......... .......... .......... 330 AAGAATGTAG CCCACGTACT TGTGGATTGA GCCGGCCGTT TTCTGGCCCA CACCAAAAAA 97818 .......... .......... .......... .......... .......... .......... 330 GGGGCTAGCC CGGCCTGACA CGTAAAGTGT CCAAGCCTGT ATGGGTTAGC TCGGATGAGG 97758 .......... .......... .......... .......... .......... .......... 330 TGGGCTAACC CATATAAACA GCTCTAATAT TGAGATAGTT ATGTTAATAT ATTAGGATTG 97698 .......... .......... .......... .......... .......... .......... 330 CTAAAATTTA AAATGAAATT ATTTAAAGGA GATTGAAAAT AATTTTTATA ACGAATATGA 97638 .......... .......... .......... .......... .......... .......... 330 TTTAAAAAAA TGAAACTAAG ATGATTTTGA CATATGCAAA GAAGATGTGT TGACGTTTTC 97578 .......... .......... .......... .......... .......... .......... 330 GTGAGGAAGT ACGAGAGGGG GTACATATAA GGTAATGCAA GGATCGAAGA AGGATTGAAA 97518 .......... .......... .......... .......... .......... .......... 330 AAAAAGTGGT TTGACATGAC ATGACGTAAC TTCATATTAT TGAAGACATG TATAACTTTA 97458 .......... .......... .......... .......... .......... .......... 330 GATCAAAATT GGCGGAGGTT AAGTATTAGG GTAGAAGGTT GGTTAGGTTG GAGTGTTGCC 97398 .......... .......... .......... .......... .......... .......... 330 TTGTTGTATA TAGGTTTAAG GCTTGGTAGT GTTTGTAGTA CTACTAACAC TTTTAGTTTG 97338 .......... .......... .......... .......... .......... .......... 330 TGTGTATTAA TTGTGTTTTG ACTATTGCAC TATTTTATTG TTGTTATTGT TTCTTTCTTG 97278 .......... .......... .......... .......... .......... .......... 330 TAGGCTTTAC ACTCTTTTTT TTAGTTACGG GCCATATTTT TGATTGGATT TAATTTGATG 97218 .......... .......... .......... .......... .......... .......... 330 TAATTGAGCC AACTTTTTCG AGAAAACAAC CTCTCTACTT TTATAAGATA ATATCATCAT 97158 .......... .......... .......... .......... .......... .......... 330 CATAATAAGA TTAGTAAATG CATTACCCTT TTTAGGCTTA TACTAAATAA TTTTTTACTA 97098 .......... .......... .......... .......... .......... .......... 330 AATATGTTAT TATTATCGGA CTTTTTGTTC ATTTTTAAAA ATATATAATT TAATAGCTCC 97038 .......... .......... .......... .......... .......... .......... 330 TTCATAAATT TCACTTATTT TTTATAAAAA AAATATAGAT ACGTAAGTTT AATTACAGAT 96978 .......... .......... .......... .......... .......... .......... 330 CAAATAAAAA GCTTAAAAAA AAAACCGTAT ATTTTGAACA CATGTGCACG TAAGGCCAAC 96918 .......... .......... .......... .......... .......... .......... 330 TGAGCGAAAT ACATTTTATT TCTAATATTT TATTAAGTGG ATTAATTATT GGATAACTTA 96858 .......... .......... .......... .......... .......... .......... 330 ACAAATTAAA ACATAATAAA TACAATTCAA AAAATATAAA CTCAATTAAT TTTGCATTGA 96798 .......... .......... .......... .......... .......... .......... 330 CTTGTCAATA ATCTCTAAAG TTCATATGTC AAATTCAACT ACAAATTAAC GATTGAAAAC 96738 .......... .......... .......... .......... .......... .......... 330 CTCATTCATC AACTCAAATC AAAAGAAAGA ACACTATAAA ATTTATAAAA TAATTGCAAT 96678 .......... .......... .......... .......... .......... .......... 330 TTTTTAAATT TGTAGTAGGC TGGATCGAAT TTATAGGCAA AATACAGGGT ATGTGAACCA 96618 .......... .......... .......... .......... .......... .......... 330 ATGATTTTTT CAATTAATTA TGCGTTTTAT CTAGTTATCT ATGTCTTTTT CTGATATGTA 96558 .......... .......... .......... .......... .......... .......... 330 TTATATAATA TTATCTGTTG ACACTCATGC TACAAAAAGA TTAAATGGTA TACTTGAATA 96498 .......... .......... .......... .......... .......... .......... 330 TTAAGTTATT TACCAAGAGA ATCACGTACG GATTCTCACT TCATACACGC TTCTCCCTTT 96438 .......... .......... .......... .......... .......... .......... 330 TTAAGCGATG TAATCATATT CTAGAAAATC TGAATCCGCT AAAGTATAAA AATCTCGATT 96378 .......... .......... .......... .......... .......... .......... 330 CATTTATCGT TCATCGTTTG ATTTTTCTCA GGATATACAA GACTTTTCTA CAGTTCTTTG 96318 .......... .......... .......... .......... .......... .......... 330 GGATGGGCCG TAGAGTGATT CAAACGGGCC TTTTAATTCG TGAGGCCCAT TAATTTGAAG 96258 .......... .......... .......... .......... .......... .......... 330 GAAAGTGAAT TTTTTTTGTT CACATCTCAT TTCTATTTTT TAGAGAAAAA AAAAATTAGG 96198 .......... .......... .......... .......... .......... .......... 330 AAATACTTCA TTCATTTTTA TTTATTTGAT ATTTAAATTA AGTATTGAAT TTCTTTCTCC 96138 .......... .......... .......... .......... .......... .......... 330 CCGTTTTAAT AAATTTAAAA AATTACTGCT TAAATTAATA GTAATCAAAT TTAGAGTTCT 96078 .......... .......... .......... .......... .......... .......... 330 AAAAAATCTT AAATAAATTA CATGTAACAT ACAAAATCAT TGTGATATCA AATTATCAAT 96018 .......... .......... .......... .......... .......... .......... 330 CTCTTGAATA AGAGATTTTA TTTGATAAGA TCAAATATAT TTTCGAAGAG ACTAAATTGC 95958 .......... .......... .......... .......... .......... .......... 330 TAATAAAAGA AATTATTAGC AATTTTATAT AATAAAAAGT TTCTAAAAAA ACGTTTTTAA 95898 .......... .......... .......... .......... .......... .......... 330 ACTTACGTAG TCCATTAGAT TTTAATCCGA GGCCACCAAT TTTATTAATT CATTTTCCGA 95838 .......... .......... .......... .......... .......... .......... 330 ATTAAATAGT AGAATAATTA ATAAATATGA TAATTTTATG TATATATTGT CATTGATAAA 95778 .......... .......... .......... .......... .......... .......... 330 TTTTATATAT ATTATCATTA ACAAAACCAA AATTCAAAAA TGAATATTTC TTCCTTTAAA 95718 .......... .......... .......... .......... .......... .......... 330 CATGAAATAT TTAATTAAAT TTTACACGAA TCAAAACTAA AATTTATCAA CAATTAGAAT 95658 .......... .......... .......... .......... .......... .......... 330 CCAAAAATGT TATTGGTGAA TGCCTCAAGT TAGCAACGCC TTGCTAGCGA AAGCAAGAAA 95598 .......... .......... .......... .......... .......... .......... 330 CTTATCTTCT GGGTCAAACT CTTCACATCA AACTTGTTTA ATATAATTAT TATTTTTGCA 95538 .......... .......... .......... .......... .......... .......... 330 AGTTATTGAA ATATAAAATT TACCATATAC GCACCCAAAT AATAGCACGG CTAGTTCTAA 95478 .......... .......... .......... .......... .......... .......... 330 CTCATCACAT CACAAGGGCT ATTGGCCTGT AACTTAAAAA TGAAACGGGT AAAATTTGTT 95418 .......... .......... .......... .......... .......... .......... 330 TAGGGTCGGG GCGACGGGTC AAATAGGAAG AGGAACGAGG AAAACCCTAA TTAAATATAA 95358 .......... .......... .......... .......... .......... .......... 330 TCATCCACTT CCATACACTC GCAGTCGGCC GCCGTCGAAT TTCTCCCGTA TGTATTTTCC 95298 .......... .......... .......... .......... .......... .......... 330 AACTTTTTCT CCGGCGATGA ACATGAGCTT TGTGTTTGAG ATCTGACGAT TTTTGTTTTG 95238 .......... .......... .......... .......... .......... .......... 330 TTTTCAGTAT TTGAATAGCA GCAGAAGAGA AATCAAGAGC GTAAAGATGA GCCGAGCAGC 95178 .......... .......... .......... .......... .......... .......... 330 AGCAGCAGTG AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC GTCATCGACT GTTCGAAGCC 95118 .......... .......... .......... .......... .......... .......... 330 AGTGGAGGAC AGTATTATGG AGATTGCTTC TCTTGACAAG TTCCTCCAAG AGAGAATTAA 95058 .......... .......... .......... .......... .......... .......... 330 GGTTGGTGGA AAAGCTGGTG CACTTGGAGA TTCCGTTACT GTCACTCGTG ATAAGAATAA 94998 .......... .......... .......... .......... .......... .......... 330 AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC TGACTAGTAC TATATTTCCA 94938 .......... .......... .......... .......... .......... .......... 330 CTCCTCATTT CGTGTAATTT GGGTTTTTGC CTGATTTTTA ATTGGGTTTA TTTGAAAAAA 94878 .......... .......... .......... .......... .......... .......... 330 TTGATCGTTG AAACTTCGTG TGGGTCGACT TTCATTGTAG TTTGATAATG TTTACACTGA 94818 .......... .......... .......... .......... .......... .......... 330 CAGATTGATA GGATTTTAGC GTAAACCTAT TCTTTTATTC GGGATGTGCT ATGCTCTGCA 94758 .......... .......... .......... .......... .......... .......... 330 AGGAGTTGTT TTGTTTGGAA TAGTGTAGTC ATTCACGCAT TGAGCTTTGA GTCAGTTGAT 94698 .......... .......... .......... .......... .......... .......... 330 AATGGGTTAA AATAGAGTTC TTTTTGCAGT TTATTTTAGT TATCAATAGT GATGATGATT 94638 .......... .......... .......... .......... .......... .......... 330 GTGTGTTTGT GTTATGTCAT TCTACTGCTT GTTTATTCAA AATATTATCC TATTTACATT 94578 .......... .......... .......... .......... .......... .......... 330 GAGAAATAAG GAGAAATAGA AGAACTAAAA CAGCAGCGTA ATATCTTGTA GGTAACCATT 94518 .......... .......... .......... .......... .......... .......... 330 TGTATCTTGA ACTAGGTATC CTAATTATCC TTGTAGCTCT TGCTGAACTT ATGGAACAGA 94458 .......... .......... .......... .......... .......... .......... 330 TAGTCTATGA GCTCTACACT TCAACGTCCA AGATTAGAAA TCGGGGTTGG CTTTTATCGT 94398 .......... .......... .......... .......... .......... .......... 330 ACTTGGATTA TTTTCACAAC TGACAGATTG AAATTAACTT ATCATAGCCT CTTTTATTGT 94338 .......... .......... .......... .......... .......... .......... 330 GGCTTGTTTC TGCTTTACCA AGAGCTCTTA TTTGGAATAG TGCATTCATT TATATTTTAA 94278 .......... .......... .......... .......... .......... .......... 330 GCTCAGAGTA GATTAACAGT GGTTTTCAAA AGAGGTCCTT TTTGCTGTTT ATTTTAGTTT 94218 .......... .......... .......... .......... .......... .......... 330 GAGTGCCCTG CACTGCAAGT CTAATAAATA AGCCCTTCTA TTCTGGAGTT ATTACATTGA 94158 .......... .......... .......... .......... .......... .......... 330 AGAGGATGAG CTTATGTCAT TCTACTTTTC GTTCATCTAA TGCATTATCT TACTTACATT 94098 .......... .......... .......... .......... .......... .......... 330 GAGAAGCAAA GAAATAACAG AAAAATTATG GTGGCGTAGT ATCTTGTAGT TATTCGTAAA 94038 .......... .......... .......... .......... .......... .......... 330 TCCAACTGTT TATCTTGTAA TTATCCGTAA ATCCAACTGT TGGTCTTCTC ATATAGCAGG 93978 .......... .......... .......... .......... .......... .......... 330 TTCAACCAGG CCCCAGTAAC CACTGTTACA TTTTTGGACT GTTGTCTGCT CTTTAGTTAT 93918 .......... .......... .......... .......... .......... .......... 330 TTAGTAAATT TTTATAAATT AGCAGACCCC TTCTTTTGCT TGCATCTTCT TGATGCCTTC 93858 .......... .......... .......... .......... .......... .......... 330 TAATGAAATC TCTTTCATCT AAAAAAGATA TTCATAACTT GAATAGGGTA TGTGCATAAT 93798 .......... .......... .......... .......... .......... .......... 330 GTTATATAAT TATAATAATC CTCACAGATC TTCCTGAATT TATGTTCAGA TTGTCAGTGA 93738 .......... .......... .......... .......... .......... .......... 330 GCATTAGCTA GATTGTTTGG CTCCTCCCAC TTCTCAGTGA AGTAGATTCT TAAGTAGGCG 93678 .......... .......... .......... .......... .......... .......... 330 GTTGTTGATG AGACCAATTA GACTGCAACC TAGCCTTTCA CTTGTGTCCA TTAGTTTGCG 93618 .......... .......... .......... .......... .......... .......... 330 TCAAGTGCAA TTTTGTTGAT TTCATCTTTT ACATCCATAA TCACACAGAA TAGTACACTT 93558 .......... .......... .......... .......... .......... .......... 330 GGATTATGTC AAATTACATG TGAAATAGGC TTGGAAGAAC TAATATGTAT TAAGTTTGTA 93498 .......... .......... .......... .......... .......... .......... 330 ACTTGAAAGA GATAGGTAAC TAACATGTAA GCAGGCTTAG TTATAGGTAA TTGATAATAT 93438 .......... .......... .......... .......... .......... .......... 330 TGATCATTAT AGATGCTCTT GCTAACTGAA ACATCCTTCA GGGCGTGTAA AGCATATTTT 93378 .......... .......... .......... .......... .......... .......... 330 CATGTATTTT TTGTTGGGTT CTGAAGAAAG TCTTCATTTT TTATGTAAGT TTGATGCAGC 93318 .......... .......... .......... .......... .......... .......... 330 TGAGTAGAAT CTATAGTGGT ATTCTTGTTT CATCTGATGT ATGTTTCTAA GCTTGTTCTG 93258 .......... .......... .......... .......... .......... .......... 330 GAAGTGACAT CAACCACTTA TTAGCATCAC CATTTACCTA GCACATTTTT GGTTCAAGTG 93198 .......... .......... .......... .......... .......... .......... 330 ATAGTCCAAA GGCTACTTGT AAAAGAAACT GATACTCTAA AGAGAACCAA ATGTCCAACA 93138 .......... .......... .......... .......... .......... .......... 330 TATTTATCAT ATTACTTTTT TTTTTTTGCA ATTTCTGTAT GCGCGATTAA TGAAAAAAGC 93078 .......... .......... .......... .......... .......... .......... 330 TATTGTGATG TTGCATTACT ACTGCTATAT ATTTTATTAA TCCTCTTCCC CCACTAAAAC 93018 .......... .......... .......... .......... .......... .......... 330 CAAAAGAAAG ACTGTTAGAA GTAGTGAATT CAGGCAATTC AAGACTAGTA AACAATGCTC 92958 .......... .......... .......... .......... .......... .......... 330 TACTTACAAT TTTTTCTTCT ACTTTTCAGG TACCTCAAAT ACCTTGTCAA AAAGTACTTG 92898 .......... .......... .......... .......... .......... .......... 330 AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT CCAACAAGGA CAGGAATGTT 92838 .......... .......... .......... .......... .......... .......... 330 TATGAGTTGC GCTACTTCAA CATTGCCGAG AATGAAGCAG ATGAAGAAGA TTAAACATGT 92778 .......... .......... .......... .......... .......... .......... 330 CTAGTCAATG TCCCTTTTAT CTTCTTATTT TGAACCTTAT ATCATCTGTT TGAGTTATTA 92718 .......... .......... .......... .......... .......... .......... 330 ATGAGCCGTA TCTTCTCATT TCCAGATTAT TGATTTTTTG TCCCCTTATC AGTAAAAGAA 92658 .......... .......... .......... .......... .......... .......... 330 AACGTTACTT TGATACACTT TGGTTTGTTC ATCTCTGGGG TCAAGTTTTT GCAAGGCATC 92598 .......... .......... .......... .......... .......... .......... 330 AATTTCTCTG TATTGCCTTT TCCCTCTTGA TGATCACATG TAATTTATAG AGTTTATCTT 92538 .......... .......... .......... .......... .......... .......... 330 TTGTTGTTCT TGTGTCTTTC TTTTAACCAC TGCGCCATTG ATGATTTCCT TCAATCCTTG 92478 .......... .......... .......... .......... .......... .......... 330 AAAAGATCGA TTGAGACTAC CTTCATTGTC CCTTTTAAGA TATCTACTTG TTAAGGGCCC 92418 .......... .......... .......... .......... .......... .......... 330 AAATGAGATT TCAATTTGGG TGCATGGAGC AAATGATATT CTAATTACCA GCCCCTCCCT 92358 .......... .......... .......... .......... .......... .......... 330 CTTCTTGTTT TTCTACCTTC ATTTAAGTTC TGATTAAATT TGAAACAATA CTGAATAGTT 92298 .......... .......... .......... .......... .......... .......... 330 TCACATTGGG GTAAAGCTAG CGATGTCTGA ATTACGTAAA ACGTTTCTAA CAAAATTGGC 92238 .......... .......... .......... .......... .......... .......... 330 TCTGCATTTT CCAACAAAGT CTACTCTTTT CTGAACGCAA CTTAAATTTA AACATCTAGT 92178 .......... .......... .......... .......... .......... .......... 330 TAAAATGATC CTTGTTGATA TGAATTGCTC TACTTTAACA TTGCTTTCAA CAATGACTAC 92118 .......... .......... .......... .......... .......... .......... 330 GCATTTTAAG AGCAAAAGTC ATGTGAAACA TATGTAACCG ACTTAGAGCC TTATTAATGT 92058 .......... .......... .......... .......... .......... .......... 330 TTCGTGTGAT ACTTGTTAAC TTTGCGAAAT ATAGTAGGAT TACTTGATTA GATTTTATTA 91998 .......... .......... .......... .......... .......... .......... 330 TGATGCAAAA ATATGAACTT ATACCTCGTA TATATATTTT ATTATTTATT TTATTTTTTT 91938 .......... .......... .......... .......... .......... .......... 330 GTTAGAAAGG AGAAAAGTTT GGAACGTAAC CTAAAATAGG GCCAAAAGTG CAAATTAGAG 91878 | ||| ||||| | .....ATAGG TGAAAAAT.. .......... .......... .......... .......... 343 AGAGGTGCCA CATTTAGCAA GTAGGAACGA AGGAAAACCC TAATTTAACA GAGTCACCAC 91818 .......... .......... .......... .......... .......... .......... 343 TTCCATACAC TCACACTAGG CCGTGGACGT CGAGTTTCAT CCTGTACGTA TGCTCCTACT 91758 .......... .......... .......... .......... .......... .......... 343 CTTTTCTTCT CTGTTTCTCT GACGATGAGA TTTGTTCTTG AGATCTGATA ATTTTTGCTT 91698 .......... .......... .......... .......... .......... .......... 343 TTGAATGCCA GCAGAAGAGA AATACAGAGA GTGTAAAGAT GAGCCGAGCA GCAGCAGCAG 91638 .......... .......... .......... .......... .......... .......... 343 CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT TGACTGTTCG AAGCCGGTAG 91578 .......... .......... .......... .......... .......... .......... 343 AAGACAGTAT CATGGAGATT GCTTCTCTTG ACAAGTTCCT TCAAGAGAGG ATTAAGGTTG 91518 .......... .......... .......... .......... .......... .......... 343 GTGGAAAAGC TGGTGCTCTT GGGGATTCCG TTACTGTTAC TCGTGACAAG AACAAGATCA 91458 .......... .......... .......... .......... .......... .......... 343 CCGTCACCTG CAACTCAACT TTTTCCAAGA GGTACTGATT CTATTGCCTC ATTTTCAGTT 91398 .......... .......... .......... .......... .......... .......... 343 GTGTTTATTT GAAAAAAAAA TGATTCTAGA AACTAAACTC TACTCGTAGA TCATAAATTA 91338 .......... .......... .......... .......... .......... .......... 343 CTAGCTACAG TCGACTTCTA TTATAGTTTG ATAACGATTA CACTTACCGA TTGACAGTAA 91278 .......... .......... .......... .......... .......... .......... 343 CTTATCGCAG ACCTATTCGA TTATCCAGTG AGTTCTGTGT AGTCATTCAC ACATTAAGCT 91218 .......... .......... .......... .......... .......... .......... 343 TTGACTCAGT TGGTAATCAG ATAAATATAT AGTTAATTTG ATAAGTTTTT GATATTTGAA 91158 .......... .......... .......... .......... .......... .......... 343 TGATTAAATC CGACAAACAG AACCATTTTA GACCTACTCC TGTAGTTAAA TGAACTATTT 91098 .......... .......... .......... .......... .......... .......... 343 ATTTAGGACA TTATTCTCTC TTTTTTGGTG TTTATTTTTG TACTAGAGGA CGGGCTTCGC 91038 .......... .......... .......... .......... .......... .......... 343 ACGTGTATTT TATGTGAATT TTTATAGATA TGTTATAATG ATAAAAATTT CATGGAAATA 90978 .......... .......... .......... .......... .......... .......... 343 TATATGTAAA TTAATGAATA ATATAATGTA ACAATTACAA AATAAGAATA AAGACTTACG 90918 .......... .......... .......... .......... .......... .......... 343 CAATAAAATA TTCATAAAAA AACTAAATTA AGAAGTCTGA TGGTGATAAA AATAAAAGAC 90858 .......... .......... .......... .......... .......... .......... 343 AAAAAAAAGA CAGATTTAAG AATGATCCAA TGTAAACAAT GTTCTTATAA GACTGATGTA 90798 .......... .......... .......... .......... .......... .......... 343 TGTATAGATG AAAAAAATAA GTACATAACT CTCTGAGTTC TTATCGACTC CTTTCATATC 90738 | | | ||||| | |||||||||| |||| ||||| | | |||||| |||||||||| .......AAG TACAAAATTA GTACATAACT CTCTAAGTTC TCACCGACTC CTTTCATATC 396 CTATCAAAAT TCAAGAGGTT TCTTCATCTA CTTTAACTAT TGAATGAAAA TGATAGCCTA 90678 ||| ||||| | ||||| | || ||||||| |||| ||||| |||| |||| |||||||||| GTATTAAAAT TTAAGAGTCT TCATCATCTA CTTTTACTAT AGAATAAAAA TGATAGCCTA 456 GTAATCTTGG TAGGGGTTTC ATGAGATTAA AAAAGTTGAA TTTATATAGA TAGAATAGAA 90618 |||||||| ||||||||| |||||| ||| ||||||| || |||||||| | ||||| |||| ATAATCTTGC TAGGGGTTTT ATGAGA-TAA AAAAGTTTAA TTTATATAAA TAGAAAAGAA 515 GGAATATCAA AAGATATATT AAAGTTTTAG TTTAAATATT TGGAGGTTAT GAATATGAAA 90558 ||||| || | ||||||| || |||||||||| |||||||||| | || | ||| |||||||||| GGAATGTCCA AAGATATCTT AAAGTTTTAG TTTAAATATT TAGAAGGTAT GAATATGAAA 575 AGATGAGAGT TATGAATATT AAGAGTA-TA AAGTTGAATA AGTAATTAAC AAATAATAAT 90499 ||||||||| |||||||||| ||||||| || ||||| |||| |||||| | |||||||||| AGATGAGAG- TATGAATATT AAGAGTATTA AAGTTTAATA AGTAATCAGA AAATAATAAT 634 AAATAAATGA AGAATATGAA AAAAGAAGTT AAAATTAGCA AACCATGTAG AAAGAACAAC 90439 |||||||||| | |||||| | ||||||| || ||| ||| || ||||| |||| |||||||||| AAATAAATGA ACAATATG-A AAAAGAAATT AAAGTTACCA AACCACGTAG AAAGAACAAC 693 TAAAGGTCTT ATCACGTAAT TAAGCGTTAA TAAATT 90403 ||||| |||| |||| ||||| | ||| |||| | ||| TAAAGTTCTT ATCATGTAAT TGAGCATTAA TTGATT 729 hqPGS_C09HBa0278J12.1-_SGN-E317264+ (90790 90403) ******************************************************************************** EST sequence 135 -strand 641 n (File: SGN-E301078-) 1 ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATACGACA 61 ATAAATCATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTGAAAAAA AAGACTAAAA 121 GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 181 ATATAGATGA AAAAATAAGT AAAAATTAGT ACATAACTCT CTGAGTTTTT ATCGACTCCT 241 TTCATATCCT ATCAAAATTC AAGAGTTTTC AGCATCTATT TTTACTATAG AATAAAAATA 301 ATAATCTTGA TAGGGGTTTC ATGAGATAAA GAAGTTGAAT TTATACAAAT AGAATAGAAG 361 GAATACCAAA AGATATCTTA AAGTTTAATT TAAATATTTG GAGGTTATGA ATATGAAAAG 421 ATGATAGTTA TGAATATTAA GAGTGTTGTG CGAAATTTGA GATAATACGA GAAAATATAT 481 AAACGCGAAA ACCAAGACAC CAGTTTTACG TGGTTCACCA ATAAATTGGC TACGTCCACG 541 GGAAGAGAGG GAGCAATTTT ATTATGGAGA GGCAAAAACA GAATTACAGA ATAGGGTTTG 601 CCATAGCGTC TATATATAGT GCTAAGCTAC ACCCTAAAAG G Predicted gene structure (within gDNA segment 93458 to 87962): Exon 1 90978 90527 ( 452 n); cDNA 1 449 ( 449 n); score: 0.773 Intron 1 90526 90238 ( 289 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 90237 90208 ( 30 n); cDNA 450 477 ( 28 n); score: 0.650 Intron 2 90207 89860 ( 348 n); Pd: 0.989 (s: 0), Pa: 0.537 (s: 0.62) Exon 3 89859 89820 ( 40 n); cDNA 478 516 ( 39 n); score: 0.625 MATCH C09HBa0278J12.1- SGN-E301078- 0.773 522 0.814 C PGS_C09HBa0278J12.1-_SGN-E301078- (90978 90527,90237 90208,89859 89820) Alignment (genomic DNA sequence = upper lines): ATATATGTAA ATTAATGAAT AATATAATGT AACAATTACA AAATAAGAAT AAAGACTTAC 90919 |||| | | |||||||| |||| ||||| |||||||||| |||| || | | || | ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATAC-GA- 58 GCAATAAAAT ATTCATAAAA AAACTAAATT AAGAAGTCTG ATGGTGATAA AAATAAAAGA 90859 ||||||| ||||||| | |||||||||| ||||||||| | | | | | ||| |||||| -CAATAAATC ATTCATA-GA AAACTAAATT AAGAAGTCTA ACAGAG-TGA AAA-AAAAGA 114 C-AAAAAAAA GA-CAGATTT AAG--AATGA TCCAATGTAA ACAATGTTCT TATAAGACTG 90803 | |||| ||| | | |||| ||| || | | |||| || ||| | |||| ||||||| || CTAAAAGAAA CAGAATATTT AAGAAAAAAA TACAATATAG ACATTATTCT TATAAGATTG 174 ATGTATGTAT AGATG-AAAA A-AA-T--A- ---AGTACAT AACTCTCTGA GTTCTTATCG 90752 |||||| ||| ||||| |||| | || | | ||||||| |||||||||| ||| |||||| ATGTATATAT AGATGAAAAA ATAAGTAAAA ATTAGTACAT AACTCTCTGA GTTTTTATCG 234 ACTCCTTTCA TATCCTATCA AAATTCAAGA GGTTTCTTCA TCTACTTTAA CTATTGAATG 90692 |||||||||| |||||||||| |||||||||| | |||| || |||| ||| | |||| |||| ACTCCTTTCA TATCCTATCA AAATTCAAGA GTTTTCAGCA TCTATTTTTA CTATAGAAT- 293 AAAATGATAG CCTAGTAATC TTGGTAGGGG TTTCATGAGA TTAAAAAAGT TGAATTTATA 90632 |||| ||| | ||||| ||| |||||| |||||||||| |||| |||| |||||||||| AAAA--ATA- ---A-TAATC TTGATAGGGG TTTCATGAGA -TAAAGAAGT TGAATTTATA 345 TAGATAGAAT AGAAGGAATA TCAAAAGATA TATTAAAGTT TTAGTTTAAA TATTTGGAGG 90572 | ||||||| |||||||||| ||||||||| | |||||| | ||| |||||| |||||||||| CAAATAGAAT AGAAGGAATA CCAAAAGATA TCTTAAAG-T TTAATTTAAA TATTTGGAGG 404 TTATGAATAT GAAAAGATGA GAGTTATGAA TATTAAGAGT ATAAAGTTGA ATAAGTAATT 90512 |||||||||| |||||||||| ||||||||| |||||||||| | TTATGAATAT GAAAAGATGA TAGTTATGAA TATTAAGAGT GTTGT..... .......... 449 AACAAATAAT AATAAATAAA TGAAGAATAT GAAAAAAGAA GTTAAAATTA GCAAACCATG 90452 .......... .......... .......... .......... .......... .......... 449 TAGAAAGAAC AACTAAAGGT CTTATCACGT AATTAAGCGT TAATAAATTT AGATTTGTGA 90392 .......... .......... .......... .......... .......... .......... 449 AGATAGAGTC ATTCTTTAAT AATAATCGAG AGGACATTAT CAACGTGTGT CTCCATTTTG 90332 .......... .......... .......... .......... .......... .......... 449 CAGATTTGCA CCCTTTATAT TATTAAATTC GTTATTTATC ATAAAGGATA ATACTTTATC 90272 .......... .......... .......... .......... .......... .......... 449 CACATAAATT ATATTATTCA TGAGAGGGGT TAAGGAAAAA GTTATGAGA- AAGAGGAAAA 90213 | ||| || ||||| || | || || .......... .......... .......... ....GCGAAA -TT-TGAGAT AATACGAGAA 473 ATATAGCAAT TTAGTAAAGA CTTTTTTTTT AAAAAAAAAT TATAATTATT ATATACATAT 90153 | ||| A-ATA..... .......... .......... .......... .......... .......... 477 AGATTATAGA TGATAAATAT TAATTAATTG GATATTTAAT TAGAAATCAA TCTTTAGAAG 90093 .......... .......... .......... .......... .......... .......... 477 TCTAAAAGTC ATTAACCTTT TAATTAAATT TATACAATCA AATATTTAAA TATTTTATAA 90033 .......... .......... .......... .......... .......... .......... 477 CAATTTAATT TATAGGAGGG GTAAAACTGT AATTCAACTT TCAACTTTTT TTGTTGATGC 89973 .......... .......... .......... .......... .......... .......... 477 TTTTAGTAAT ACATGATGAA TTAAGAGTGC CCAGACTTGA AGCACAGTTC CACTCTGGAT 89913 .......... .......... .......... .......... .......... .......... 477 TTATCACTGT TTATTTATCC AAAAACACTA TCCTGTTTAC ATTGGGAAAT CAGTAGAAAC 89853 || |||| .......... .......... .......... .......... .......... ...TATAAAC 484 AGAATGACTA AAACAGCAGT GTGTTCTAAG TTC 89820 | || | | ||| |||| | | | | ||| GCGAAAACCA AGACACCAGT -TTTACGTGG TTC 516 hqPGS_C09HBa0278J12.1-_SGN-E301078- (90978 90527) ******************************************************************************** EST sequence 136 -strand 575 n (File: SGN-E301194-) 1 CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 61 GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 121 ATGAAAAAAT AAGTAAAAAT TAGTACATAA CTCTCTGAGT TTTTATCGAC TCCTTTCATA 181 TCCTATCAAA ATTCAAGAGT TTTCAGCATC TATTTTTACT ATAGAATAAA AATAATAATC 241 TTGATAGGGG TTTCATGAGA TAAAGAAGTT GAATTTATAC AAATAGAATA GAAGGAATAC 301 CAAAAGATTT CTTAAAGTTT AATTTAAATA TTTGGAGGTT ATGAATATGA AAAGATGATA 361 GTTATGAATA TTAAGAGTGT TGTGCGAAAT TTGAGATAAT ACGAGAAAAT ATATAAACGC 421 GAAAAACAAG ACAACAGATT TACGTGGTTC ACCAATAAAT TGGCTACGTC CACGGGAAGA 481 GAGGGAGCAA TTTTATTATG GAGAGGCAAA AACAGAATTA CAGAATAGGG TTTGCCATAG 541 CGTCTATATA TAGTGCTAAG CTACGCCCTA AAAGG Predicted gene structure (within gDNA segment 92798 to 87362): Exon 1 90908 90534 ( 375 n); cDNA 2 376 ( 375 n); score: 0.783 Intron 1 90533 88373 (2161 n); Pd: 0.000 (s: 0.98), Pa: 0.988 (s: 0.60) Exon 2 88372 88328 ( 45 n); cDNA 377 418 ( 42 n); score: 0.600 MATCH C09HBa0278J12.1- SGN-E301194- 0.783 420 0.730 C PGS_C09HBa0278J12.1-_SGN-E301194- (90908 90534,88372 88328) Alignment (genomic DNA sequence = upper lines): ATTCATAAAA AAACTAAATT AAGAAGTCTG ATGGTGATAA AAATAAAAGA CAAAAAAAAG 90849 |||||| | | |||||||||| ||||||||| | | | || ||| || | ||| ||| ATTCAT-AGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 60 ACAGATTTAA G--AATGATC CAATGTAAAC AATGTTCTTA TAAGACTGAT GTATGTATAG 90791 | |||||| | || || |||| || || | | |||||| ||||| |||| |||| ||||| GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 120 ATG-AAAAA- AA-T----A- -AGTACATAA CTCTCTGAGT TCTTATCGAC TCCTTTCATA 90740 ||| ||||| || | | ||||||||| |||||||||| | |||||||| |||||||||| ATGAAAAAAT AAGTAAAAAT TAGTACATAA CTCTCTGAGT TTTTATCGAC TCCTTTCATA 180 TCCTATCAAA ATTCAAGAGG TTTCTTCATC TACTTTAACT ATTGAATGAA AATGATAGCC 90680 |||||||||| ||||||||| |||| |||| || ||| ||| || |||| || || ||| TCCTATCAAA ATTCAAGAGT TTTCAGCATC TATTTTTACT ATAGAAT-AA AA--ATA--- 234 TAGTAATCTT GGTAGGGGTT TCATGAGATT AAAAAAGTTG AATTTATATA GATAGAATAG 90620 | ||||||| | |||||||| |||||||| | ||| |||||| |||||||| | ||||||||| -A-TAATCTT GATAGGGGTT TCATGAGA-T AAAGAAGTTG AATTTATACA AATAGAATAG 291 AAGGAATATC AAAAGATATA TTAAAGTTTT AGTTTAAATA TTTGGAGGTT ATGAATATGA 90560 |||||||| | ||||||| | |||||| ||| | |||||||| |||||||||| |||||||||| AAGGAATACC AAAAGATTTC TTAAAG-TTT AATTTAAATA TTTGGAGGTT ATGAATATGA 350 AAAGATGAGA GTTATGAATA TTAAGAGTAT AAAGTTGAAT AAGTAATTAA CAAATAATAA 90500 |||||||| | |||||||||| |||||| AAAGATGATA GTTATGAATA TTAAGA.... .......... .......... .......... 376 TAAATAAATG AAGAATATGA AAAAAGAAGT TAAAATTAGC AAACCATGTA GAAAGAACAA 90440 .......... .......... .......... .......... .......... .......... 376 CTAAAGGTCT TATCACGTAA TTAAGCGTTA ATAAATTTAG ATTTGTGAAG ATAGAGTCAT 90380 .......... .......... .......... .......... .......... .......... 376 TCTTTAATAA TAATCGAGAG GACATTATCA ACGTGTGTCT CCATTTTGCA GATTTGCACC 90320 .......... .......... .......... .......... .......... .......... 376 CTTTATATTA TTAAATTCGT TATTTATCAT AAAGGATAAT ACTTTATCCA CATAAATTAT 90260 .......... .......... .......... .......... .......... .......... 376 ATTATTCATG AGAGGGGTTA AGGAAAAAGT TATGAGAAAG AGGAAAAATA TAGCAATTTA 90200 .......... .......... .......... .......... .......... .......... 376 GTAAAGACTT TTTTTTTAAA AAAAAATTAT AATTATTATA TACATATAGA TTATAGATGA 90140 .......... .......... .......... .......... .......... .......... 376 TAAATATTAA TTAATTGGAT ATTTAATTAG AAATCAATCT TTAGAAGTCT AAAAGTCATT 90080 .......... .......... .......... .......... .......... .......... 376 AACCTTTTAA TTAAATTTAT ACAATCAAAT ATTTAAATAT TTTATAACAA TTTAATTTAT 90020 .......... .......... .......... .......... .......... .......... 376 AGGAGGGGTA AAACTGTAAT TCAACTTTCA ACTTTTTTTG TTGATGCTTT TAGTAATACA 89960 .......... .......... .......... .......... .......... .......... 376 TGATGAATTA AGAGTGCCCA GACTTGAAGC ACAGTTCCAC TCTGGATTTA TCACTGTTTA 89900 .......... .......... .......... .......... .......... .......... 376 TTTATCCAAA AACACTATCC TGTTTACATT GGGAAATCAG TAGAAACAGA ATGACTAAAA 89840 .......... .......... .......... .......... .......... .......... 376 CAGCAGTGTG TTCTAAGTTC GCATGATCGT TGAAGCCTTT ACTAAGCTTA TGGTACAGAT 89780 .......... .......... .......... .......... .......... .......... 376 AGTCTATATG CTTTATGATT AAGCAACTAT GTCTGGGTCC CAAATTAGAA GTCAGGGTTG 89720 .......... .......... .......... .......... .......... .......... 376 GCTTTTATTG GAGTTTGATT GTTTTTACAA CTGACAGTCT GATATTAACT TATTCATAGC 89660 .......... .......... .......... .......... .......... .......... 376 TTCTTTTATT TTGGCTCGTC TCTGCTTTAC AAAGATTTCT TATTTGGATA GTGCAACAGC 89600 .......... .......... .......... .......... .......... .......... 376 AACAACACCA TACCCCATGT AACCCACAAG TGAGGTCTGG GGAGGGTAGA GACTCTGCAC 89540 .......... .......... .......... .......... .......... .......... 376 TATCCGTTAA GTGTAAGCAT ACCTTCTTGG ATAGTGCAGA TATTCATAAA TCGCGCTCTT 89480 .......... .......... .......... .......... .......... .......... 376 GCTAATGATT TTAAAAGGAA GTCGTTTTAA CTGTTTATTA TAGTTAGAGT TCCCTGCACT 89420 .......... .......... .......... .......... .......... .......... 376 GCAAGTCTAA AAGAAGCTCT CTTCTGTTCA GGATTGTTAT ACTGAACATG ATGAGTTTAT 89360 .......... .......... .......... .......... .......... .......... 376 ATCGTTCTGT TGTTTGTTTA TCTAATGCAT TATCCTATTT ACATCGAGAA ACAAAAAAAC 89300 .......... .......... .......... .......... .......... .......... 376 AATTGAAACG AAAATGAAAG CATAACATCT TGGTGTTCTG GTTTCATCCG TTTTATGTTT 89240 .......... .......... .......... .......... .......... .......... 376 CTAAGCTTGT TTTGGAAGTG ACATCAACCA TTTACTAGCT TCACCATTCA CCTACACATC 89180 .......... .......... .......... .......... .......... .......... 376 TTAGGCTTGA GTGATATTCT AAAGGCTATT TGTAAAAGAA ACTGAGAGTC TAAAACATTA 89120 .......... .......... .......... .......... .......... .......... 376 TATCAATTTA CTTTGGGGTA AATTATGTAT GCCCGATTGA TGAAAGAAGT TCTTGTGATG 89060 .......... .......... .......... .......... .......... .......... 376 TAGAGTTGTT GCTATGTATT CTACTCCTAC CCCTTCAAAA CCAAAAGAAC AGAGTGTTAA 89000 .......... .......... .......... .......... .......... .......... 376 AAGTAGTGAA ATCAGGCAAC CGAGGCTAGT AAACAACAGC TCGACTTACA ATCTTCTATT 88940 .......... .......... .......... .......... .......... .......... 376 ATTCAGGTAC CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG 88880 .......... .......... .......... .......... .......... .......... 376 GCTTAGGGTG ATTGCTTCCA ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT 88820 .......... .......... .......... .......... .......... .......... 376 TGCTGAGAAT GAAGCAGATG AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT 88760 .......... .......... .......... .......... .......... .......... 376 TCTTTCTTTA GTCGGCCTTC ACTTTTTGAT CCTTGTATCA TCACTAATGA ATCCTGTCTT 88700 .......... .......... .......... .......... .......... .......... 376 CTCATTTCTA GATTTTGTTT TTGCAGTTTG CTTATCAGTA AAAGAAAACA TTACATCGAT 88640 .......... .......... .......... .......... .......... .......... 376 ACTTTGGTTT GTCTATCTTT GGGGATAATT ATGAAAATGT CAATTTATCT GTATTGCCTT 88580 .......... .......... .......... .......... .......... .......... 376 TCTCCTCTGG ATGATCTCAA GACATATATA AGATTAAAAT AGATATAATA TCTCATAATT 88520 .......... .......... .......... .......... .......... .......... 376 AATTCTTTTT ATGTTGCACA TAAATGAAAA CAAATAATTT GAAGTGGAGA GAGGTTTTAC 88460 .......... .......... .......... .......... .......... .......... 376 ACTTGCTAGG AAGAATTATA TGTTATTGTA TGCCTGAAAA TCTGTACTGT CGACTCACAT 88400 .......... .......... .......... .......... .......... .......... 376 TTTTCTGTTG TTTTGAAATG TGGGCAGGGA AAGTGAAAAC GAGTTGAGAG TGAGACTCGA 88340 | ||| || | |||||| | | || || .......... .......... .......GTG TTGTGCGAA- -ATTTGAGA- TAATACGAGA 406 ACCTTTATTA AC 88328 | | ||| | || AAATATATAA AC 418 hqPGS_C09HBa0278J12.1-_SGN-E301194- (90908 90534) ******************************************************************************** EST sequence 34 -strand 680 n (File: SGN-E371903-) 1 TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG CAGCAGCAGT 61 GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC CAGTGGAGGA 121 CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA AGGTTGGTGG 181 AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA AAATCACCGT 241 CACTTGCAAC TCCACTTTTT CCAAGAGGTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA 301 GAAAAACAAC GTTAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA 361 TGAGTTGCGC TACTTCAACA TTGCCGAGAA TGAAGCAGAT GAAGAAGATT AAACATGTCT 421 AGTCAATGTC CCTTTTATCT TCTTATTTTG AACCTTATAT CATCTGTTTG AGTTATTAAT 481 GAGCCGTATC TTCTCATTTC CAGATTATTG ATTTTTTGTC CCCTTATCAG TAAAAGAAAA 541 CGTTACTTTG ATACACTTTG GTTTGTTCAT CTCTGGGGTC AAGTTTTTGC AAGGCATCAA 601 TTTCTCTGTA TTGCCTTTTC CCTCTTGATG ATCACATGTA ATTTATAGAG TTTATCTTTT 661 GTTGTTCTTG GAAAAAAAAA Predicted gene structure (within gDNA segment 95838 to 91826): Exon 1 95228 94962 ( 267 n); cDNA 1 267 ( 267 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92525 ( 404 n); cDNA 268 671 ( 404 n); score: 0.998 Intron 2 92524 91933 ( 592 n); Pd: 0.000 (s: 0.98), Pa: 0.977 (s: 0) Exon 3 91932 91924 ( 9 n); cDNA 672 680 ( 9 n); score: 0.667 MATCH C09HBa0278J12.1- SGN-E371903- 0.999 680 1.000 C PGS_C09HBa0278J12.1-_SGN-E371903- (95228 94962,92928 92525,91932 91924) Alignment (genomic DNA sequence = upper lines): TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG CAGCAGCAGT 95169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG CAGCAGCAGT 60 GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC CAGTGGAGGA 95109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC CAGTGGAGGA 120 CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA AGGTTGGTGG 95049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA AGGTTGGTGG 180 AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA AAATCACCGT 94989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA AAATCACCGT 240 CACTTGCAAC TCCACTTTTT CCAAGAGGTA CTGACTAGTA CTATATTTCC ACTCCTCATT 94929 |||||||||| |||||||||| ||||||| CACTTGCAAC TCCACTTTTT CCAAGAG... .......... .......... .......... 267 TCGTGTAATT TGGGTTTTTG CCTGATTTTT AATTGGGTTT ATTTGAAAAA ATTGATCGTT 94869 .......... .......... .......... .......... .......... .......... 267 GAAACTTCGT GTGGGTCGAC TTTCATTGTA GTTTGATAAT GTTTACACTG ACAGATTGAT 94809 .......... .......... .......... .......... .......... .......... 267 AGGATTTTAG CGTAAACCTA TTCTTTTATT CGGGATGTGC TATGCTCTGC AAGGAGTTGT 94749 .......... .......... .......... .......... .......... .......... 267 TTTGTTTGGA ATAGTGTAGT CATTCACGCA TTGAGCTTTG AGTCAGTTGA TAATGGGTTA 94689 .......... .......... .......... .......... .......... .......... 267 AAATAGAGTT CTTTTTGCAG TTTATTTTAG TTATCAATAG TGATGATGAT TGTGTGTTTG 94629 .......... .......... .......... .......... .......... .......... 267 TGTTATGTCA TTCTACTGCT TGTTTATTCA AAATATTATC CTATTTACAT TGAGAAATAA 94569 .......... .......... .......... .......... .......... .......... 267 GGAGAAATAG AAGAACTAAA ACAGCAGCGT AATATCTTGT AGGTAACCAT TTGTATCTTG 94509 .......... .......... .......... .......... .......... .......... 267 AACTAGGTAT CCTAATTATC CTTGTAGCTC TTGCTGAACT TATGGAACAG ATAGTCTATG 94449 .......... .......... .......... .......... .......... .......... 267 AGCTCTACAC TTCAACGTCC AAGATTAGAA ATCGGGGTTG GCTTTTATCG TACTTGGATT 94389 .......... .......... .......... .......... .......... .......... 267 ATTTTCACAA CTGACAGATT GAAATTAACT TATCATAGCC TCTTTTATTG TGGCTTGTTT 94329 .......... .......... .......... .......... .......... .......... 267 CTGCTTTACC AAGAGCTCTT ATTTGGAATA GTGCATTCAT TTATATTTTA AGCTCAGAGT 94269 .......... .......... .......... .......... .......... .......... 267 AGATTAACAG TGGTTTTCAA AAGAGGTCCT TTTTGCTGTT TATTTTAGTT TGAGTGCCCT 94209 .......... .......... .......... .......... .......... .......... 267 GCACTGCAAG TCTAATAAAT AAGCCCTTCT ATTCTGGAGT TATTACATTG AAGAGGATGA 94149 .......... .......... .......... .......... .......... .......... 267 GCTTATGTCA TTCTACTTTT CGTTCATCTA ATGCATTATC TTACTTACAT TGAGAAGCAA 94089 .......... .......... .......... .......... .......... .......... 267 AGAAATAACA GAAAAATTAT GGTGGCGTAG TATCTTGTAG TTATTCGTAA ATCCAACTGT 94029 .......... .......... .......... .......... .......... .......... 267 TTATCTTGTA ATTATCCGTA AATCCAACTG TTGGTCTTCT CATATAGCAG GTTCAACCAG 93969 .......... .......... .......... .......... .......... .......... 267 GCCCCAGTAA CCACTGTTAC ATTTTTGGAC TGTTGTCTGC TCTTTAGTTA TTTAGTAAAT 93909 .......... .......... .......... .......... .......... .......... 267 TTTTATAAAT TAGCAGACCC CTTCTTTTGC TTGCATCTTC TTGATGCCTT CTAATGAAAT 93849 .......... .......... .......... .......... .......... .......... 267 CTCTTTCATC TAAAAAAGAT ATTCATAACT TGAATAGGGT ATGTGCATAA TGTTATATAA 93789 .......... .......... .......... .......... .......... .......... 267 TTATAATAAT CCTCACAGAT CTTCCTGAAT TTATGTTCAG ATTGTCAGTG AGCATTAGCT 93729 .......... .......... .......... .......... .......... .......... 267 AGATTGTTTG GCTCCTCCCA CTTCTCAGTG AAGTAGATTC TTAAGTAGGC GGTTGTTGAT 93669 .......... .......... .......... .......... .......... .......... 267 GAGACCAATT AGACTGCAAC CTAGCCTTTC ACTTGTGTCC ATTAGTTTGC GTCAAGTGCA 93609 .......... .......... .......... .......... .......... .......... 267 ATTTTGTTGA TTTCATCTTT TACATCCATA ATCACACAGA ATAGTACACT TGGATTATGT 93549 .......... .......... .......... .......... .......... .......... 267 CAAATTACAT GTGAAATAGG CTTGGAAGAA CTAATATGTA TTAAGTTTGT AACTTGAAAG 93489 .......... .......... .......... .......... .......... .......... 267 AGATAGGTAA CTAACATGTA AGCAGGCTTA GTTATAGGTA ATTGATAATA TTGATCATTA 93429 .......... .......... .......... .......... .......... .......... 267 TAGATGCTCT TGCTAACTGA AACATCCTTC AGGGCGTGTA AAGCATATTT TCATGTATTT 93369 .......... .......... .......... .......... .......... .......... 267 TTTGTTGGGT TCTGAAGAAA GTCTTCATTT TTTATGTAAG TTTGATGCAG CTGAGTAGAA 93309 .......... .......... .......... .......... .......... .......... 267 TCTATAGTGG TATTCTTGTT TCATCTGATG TATGTTTCTA AGCTTGTTCT GGAAGTGACA 93249 .......... .......... .......... .......... .......... .......... 267 TCAACCACTT ATTAGCATCA CCATTTACCT AGCACATTTT TGGTTCAAGT GATAGTCCAA 93189 .......... .......... .......... .......... .......... .......... 267 AGGCTACTTG TAAAAGAAAC TGATACTCTA AAGAGAACCA AATGTCCAAC ATATTTATCA 93129 .......... .......... .......... .......... .......... .......... 267 TATTACTTTT TTTTTTTTGC AATTTCTGTA TGCGCGATTA ATGAAAAAAG CTATTGTGAT 93069 .......... .......... .......... .......... .......... .......... 267 GTTGCATTAC TACTGCTATA TATTTTATTA ATCCTCTTCC CCCACTAAAA CCAAAAGAAA 93009 .......... .......... .......... .......... .......... .......... 267 GACTGTTAGA AGTAGTGAAT TCAGGCAATT CAAGACTAGT AAACAATGCT CTACTTACAA 92949 .......... .......... .......... .......... .......... .......... 267 TTTTTTCTTC TACTTTTCAG GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC 92889 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC 307 AACGTTAGGG ATTGGCTTAG GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG 92829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTTAGGG ATTGGCTTAG GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG 367 CGCTACTTCA ACATTGCCGA GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT 92769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTACTTCA ACATTGCCGA GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT 427 GTCCCTTTTA TCTTCTTATT TTGAACCTTA TATCATCTGT TTGAGTTATT AATGAGCCGT 92709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCCTTTTA TCTTCTTATT TTGAACCTTA TATCATCTGT TTGAGTTATT AATGAGCCGT 487 ATCTTCTCAT TTCCAGATTA TTGATTTTTT GTCCCCTTAT CAGTAAAAGA AAACGTTACT 92649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTCTCAT TTCCAGATTA TTGATTTTTT GTCCCCTTAT CAGTAAAAGA AAACGTTACT 547 TTGATACACT TTGGTTTGTT CATCTCTGGG GTCAAGTTTT TGCAAGGCAT CAATTTCTCT 92589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATACACT TTGGTTTGTT CATCTCTGGG GTCAAGTTTT TGCAAGGCAT CAATTTCTCT 607 GTATTGCCTT TTCCCTCTTG ATGATCACAT GTAATTTATA GAGTTTATCT TTTGTTGTTC 92529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTGCCTT TTCCCTCTTG ATGATCACAT GTAATTTATA GAGTTTATCT TTTGTTGTTC 667 TTGTGTCTTT CTTTTAACCA CTGCGCCATT GATGATTTCC TTCAATCCTT GAAAAGATCG 92469 ||| TTGG...... .......... .......... .......... .......... .......... 671 ATTGAGACTA CCTTCATTGT CCCTTTTAAG ATATCTACTT GTTAAGGGCC CAAATGAGAT 92409 .......... .......... .......... .......... .......... .......... 671 TTCAATTTGG GTGCATGGAG CAAATGATAT TCTAATTACC AGCCCCTCCC TCTTCTTGTT 92349 .......... .......... .......... .......... .......... .......... 671 TTTCTACCTT CATTTAAGTT CTGATTAAAT TTGAAACAAT ACTGAATAGT TTCACATTGG 92289 .......... .......... .......... .......... .......... .......... 671 GGTAAAGCTA GCGATGTCTG AATTACGTAA AACGTTTCTA ACAAAATTGG CTCTGCATTT 92229 .......... .......... .......... .......... .......... .......... 671 TCCAACAAAG TCTACTCTTT TCTGAACGCA ACTTAAATTT AAACATCTAG TTAAAATGAT 92169 .......... .......... .......... .......... .......... .......... 671 CCTTGTTGAT ATGAATTGCT CTACTTTAAC ATTGCTTTCA ACAATGACTA CGCATTTTAA 92109 .......... .......... .......... .......... .......... .......... 671 GAGCAAAAGT CATGTGAAAC ATATGTAACC GACTTAGAGC CTTATTAATG TTTCGTGTGA 92049 .......... .......... .......... .......... .......... .......... 671 TACTTGTTAA CTTTGCGAAA TATAGTAGGA TTACTTGATT AGATTTTATT ATGATGCAAA 91989 .......... .......... .......... .......... .......... .......... 671 AATATGAACT TATACCTCGT ATATATATTT TATTATTTAT TTTATTTTTT TGTTAGAAAG 91929 ||| .......... .......... .......... .......... .......... ......AAAA 675 GAGAA 91924 | || AAAAA 680 hqPGS_C09HBa0278J12.1-_SGN-E371903- (95228 94962,92928 92525) ******************************************************************************** EST sequence 213 +strand 542 n (File: SGN-E551726+) 1 TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT GGTGGAAAAG CTGGTGCACT 61 TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC 121 TTTTTCCAAG AGGTACCTCA AATACCTTGT CAAAAAGTAC TTGAAGAAAA ACAACGTTAG 181 GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTATGAGT TGCGCTACTT 241 CAACATTGCC GAGAATGAAG CAGATGAAGA AGATTAAACA TGTCTAGTCA ATGTCCCTTT 301 TATCTTCTTA TTTTGAACCT TATATCATCT GTTTGAGTTA TTAATGAGCC GTATCTTCTC 361 ATTTCCAGAT TATTGATTTT TTGTCCCCTT ATCAGTAAAA GAAAACGTTA CTTTGATACA 421 CTTTGGTTTG TTCATCTCTG GGGTCAAGTT TTTGCAAGGC ATCAATTTCT CTGTATTGCC 481 TTTTCCCTCT TGATGATCAC ATGTAATTTA TAGAGTTTAT CTTTTGTTGT TAAAAAAAAA 541 AA Predicted gene structure (within gDNA segment 95693 to 91810): Exon 1 95093 94962 ( 132 n); cDNA 1 132 ( 132 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92530 ( 399 n); cDNA 133 531 ( 399 n); score: 1.000 Intron 2 92529 91933 ( 597 n); Pd: 0.000 (s: 1.00), Pa: 0.977 (s: 0) Exon 3 91932 91922 ( 11 n); cDNA 532 542 ( 11 n); score: 0.727 MATCH C09HBa0278J12.1- SGN-E551726+ 1.000 542 1.000 C PGS_C09HBa0278J12.1-_SGN-E551726+ (95093 94962,92928 92530,91932 91922) Alignment (genomic DNA sequence = upper lines): TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT GGTGGAAAAG CTGGTGCACT 95034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCTT GACAAGTTCC TCCAAGAGAG AATTAAGGTT GGTGGAAAAG CTGGTGCACT 60 TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC 94974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGATTCC GTTACTGTCA CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC 120 TTTTTCCAAG AGGTACTGAC TAGTACTATA TTTCCACTCC TCATTTCGTG TAATTTGGGT 94914 |||||||||| || TTTTTCCAAG AG........ .......... .......... .......... .......... 132 TTTTGCCTGA TTTTTAATTG GGTTTATTTG AAAAAATTGA TCGTTGAAAC TTCGTGTGGG 94854 .......... .......... .......... .......... .......... .......... 132 TCGACTTTCA TTGTAGTTTG ATAATGTTTA CACTGACAGA TTGATAGGAT TTTAGCGTAA 94794 .......... .......... .......... .......... .......... .......... 132 ACCTATTCTT TTATTCGGGA TGTGCTATGC TCTGCAAGGA GTTGTTTTGT TTGGAATAGT 94734 .......... .......... .......... .......... .......... .......... 132 GTAGTCATTC ACGCATTGAG CTTTGAGTCA GTTGATAATG GGTTAAAATA GAGTTCTTTT 94674 .......... .......... .......... .......... .......... .......... 132 TGCAGTTTAT TTTAGTTATC AATAGTGATG ATGATTGTGT GTTTGTGTTA TGTCATTCTA 94614 .......... .......... .......... .......... .......... .......... 132 CTGCTTGTTT ATTCAAAATA TTATCCTATT TACATTGAGA AATAAGGAGA AATAGAAGAA 94554 .......... .......... .......... .......... .......... .......... 132 CTAAAACAGC AGCGTAATAT CTTGTAGGTA ACCATTTGTA TCTTGAACTA GGTATCCTAA 94494 .......... .......... .......... .......... .......... .......... 132 TTATCCTTGT AGCTCTTGCT GAACTTATGG AACAGATAGT CTATGAGCTC TACACTTCAA 94434 .......... .......... .......... .......... .......... .......... 132 CGTCCAAGAT TAGAAATCGG GGTTGGCTTT TATCGTACTT GGATTATTTT CACAACTGAC 94374 .......... .......... .......... .......... .......... .......... 132 AGATTGAAAT TAACTTATCA TAGCCTCTTT TATTGTGGCT TGTTTCTGCT TTACCAAGAG 94314 .......... .......... .......... .......... .......... .......... 132 CTCTTATTTG GAATAGTGCA TTCATTTATA TTTTAAGCTC AGAGTAGATT AACAGTGGTT 94254 .......... .......... .......... .......... .......... .......... 132 TTCAAAAGAG GTCCTTTTTG CTGTTTATTT TAGTTTGAGT GCCCTGCACT GCAAGTCTAA 94194 .......... .......... .......... .......... .......... .......... 132 TAAATAAGCC CTTCTATTCT GGAGTTATTA CATTGAAGAG GATGAGCTTA TGTCATTCTA 94134 .......... .......... .......... .......... .......... .......... 132 CTTTTCGTTC ATCTAATGCA TTATCTTACT TACATTGAGA AGCAAAGAAA TAACAGAAAA 94074 .......... .......... .......... .......... .......... .......... 132 ATTATGGTGG CGTAGTATCT TGTAGTTATT CGTAAATCCA ACTGTTTATC TTGTAATTAT 94014 .......... .......... .......... .......... .......... .......... 132 CCGTAAATCC AACTGTTGGT CTTCTCATAT AGCAGGTTCA ACCAGGCCCC AGTAACCACT 93954 .......... .......... .......... .......... .......... .......... 132 GTTACATTTT TGGACTGTTG TCTGCTCTTT AGTTATTTAG TAAATTTTTA TAAATTAGCA 93894 .......... .......... .......... .......... .......... .......... 132 GACCCCTTCT TTTGCTTGCA TCTTCTTGAT GCCTTCTAAT GAAATCTCTT TCATCTAAAA 93834 .......... .......... .......... .......... .......... .......... 132 AAGATATTCA TAACTTGAAT AGGGTATGTG CATAATGTTA TATAATTATA ATAATCCTCA 93774 .......... .......... .......... .......... .......... .......... 132 CAGATCTTCC TGAATTTATG TTCAGATTGT CAGTGAGCAT TAGCTAGATT GTTTGGCTCC 93714 .......... .......... .......... .......... .......... .......... 132 TCCCACTTCT CAGTGAAGTA GATTCTTAAG TAGGCGGTTG TTGATGAGAC CAATTAGACT 93654 .......... .......... .......... .......... .......... .......... 132 GCAACCTAGC CTTTCACTTG TGTCCATTAG TTTGCGTCAA GTGCAATTTT GTTGATTTCA 93594 .......... .......... .......... .......... .......... .......... 132 TCTTTTACAT CCATAATCAC ACAGAATAGT ACACTTGGAT TATGTCAAAT TACATGTGAA 93534 .......... .......... .......... .......... .......... .......... 132 ATAGGCTTGG AAGAACTAAT ATGTATTAAG TTTGTAACTT GAAAGAGATA GGTAACTAAC 93474 .......... .......... .......... .......... .......... .......... 132 ATGTAAGCAG GCTTAGTTAT AGGTAATTGA TAATATTGAT CATTATAGAT GCTCTTGCTA 93414 .......... .......... .......... .......... .......... .......... 132 ACTGAAACAT CCTTCAGGGC GTGTAAAGCA TATTTTCATG TATTTTTTGT TGGGTTCTGA 93354 .......... .......... .......... .......... .......... .......... 132 AGAAAGTCTT CATTTTTTAT GTAAGTTTGA TGCAGCTGAG TAGAATCTAT AGTGGTATTC 93294 .......... .......... .......... .......... .......... .......... 132 TTGTTTCATC TGATGTATGT TTCTAAGCTT GTTCTGGAAG TGACATCAAC CACTTATTAG 93234 .......... .......... .......... .......... .......... .......... 132 CATCACCATT TACCTAGCAC ATTTTTGGTT CAAGTGATAG TCCAAAGGCT ACTTGTAAAA 93174 .......... .......... .......... .......... .......... .......... 132 GAAACTGATA CTCTAAAGAG AACCAAATGT CCAACATATT TATCATATTA CTTTTTTTTT 93114 .......... .......... .......... .......... .......... .......... 132 TTTGCAATTT CTGTATGCGC GATTAATGAA AAAAGCTATT GTGATGTTGC ATTACTACTG 93054 .......... .......... .......... .......... .......... .......... 132 CTATATATTT TATTAATCCT CTTCCCCCAC TAAAACCAAA AGAAAGACTG TTAGAAGTAG 92994 .......... .......... .......... .......... .......... .......... 132 TGAATTCAGG CAATTCAAGA CTAGTAAACA ATGCTCTACT TACAATTTTT TCTTCTACTT 92934 .......... .......... .......... .......... .......... .......... 132 TTCAGGTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 92874 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 187 CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 92814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 247 GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC 92754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC 307 TTATTTTGAA CCTTATATCA TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA 92694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTTGAA CCTTATATCA TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA 367 GATTATTGAT TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACTTTGAT ACACTTTGGT 92634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTATTGAT TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACTTTGAT ACACTTTGGT 427 TTGTTCATCT CTGGGGTCAA GTTTTTGCAA GGCATCAATT TCTCTGTATT GCCTTTTCCC 92574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCATCT CTGGGGTCAA GTTTTTGCAA GGCATCAATT TCTCTGTATT GCCTTTTCCC 487 TCTTGATGAT CACATGTAAT TTATAGAGTT TATCTTTTGT TGTTCTTGTG TCTTTCTTTT 92514 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCTTGATGAT CACATGTAAT TTATAGAGTT TATCTTTTGT TGTT...... .......... 531 AACCACTGCG CCATTGATGA TTTCCTTCAA TCCTTGAAAA GATCGATTGA GACTACCTTC 92454 .......... .......... .......... .......... .......... .......... 531 ATTGTCCCTT TTAAGATATC TACTTGTTAA GGGCCCAAAT GAGATTTCAA TTTGGGTGCA 92394 .......... .......... .......... .......... .......... .......... 531 TGGAGCAAAT GATATTCTAA TTACCAGCCC CTCCCTCTTC TTGTTTTTCT ACCTTCATTT 92334 .......... .......... .......... .......... .......... .......... 531 AAGTTCTGAT TAAATTTGAA ACAATACTGA ATAGTTTCAC ATTGGGGTAA AGCTAGCGAT 92274 .......... .......... .......... .......... .......... .......... 531 GTCTGAATTA CGTAAAACGT TTCTAACAAA ATTGGCTCTG CATTTTCCAA CAAAGTCTAC 92214 .......... .......... .......... .......... .......... .......... 531 TCTTTTCTGA ACGCAACTTA AATTTAAACA TCTAGTTAAA ATGATCCTTG TTGATATGAA 92154 .......... .......... .......... .......... .......... .......... 531 TTGCTCTACT TTAACATTGC TTTCAACAAT GACTACGCAT TTTAAGAGCA AAAGTCATGT 92094 .......... .......... .......... .......... .......... .......... 531 GAAACATATG TAACCGACTT AGAGCCTTAT TAATGTTTCG TGTGATACTT GTTAACTTTG 92034 .......... .......... .......... .......... .......... .......... 531 CGAAATATAG TAGGATTACT TGATTAGATT TTATTATGAT GCAAAAATAT GAACTTATAC 91974 .......... .......... .......... .......... .......... .......... 531 CTCGTATATA TATTTTATTA TTTATTTTAT TTTTTTGTTA GAAAGGAGAA AA 91922 ||| | || || .......... .......... .......... .......... .AAAAAAAAA AA 542 hqPGS_C09HBa0278J12.1-_SGN-E551726+ (95093 94962,92928 92530) ******************************************************************************** EST sequence 216 +strand 472 n (File: SGN-E551822+) 1 GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 61 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAACAACG TTAGGGATTG GCTTAGGGTG 121 ATTGCTTCCA ACAAGGACAG GAATGTTTAT GAGTTGCGCT ACTTCAACAT TGCCGAGAAT 181 GAAGCAGATG AAGAAGATTA AACATGTCTA GTCAATGTCC CTTTTATCTT CTTATTTTGA 241 ACCTTATATC ATCTGTTTGA GTTATTAATG AGCCGTATCT TCTCATTTCC AGATTATTGA 301 TTTTTTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA TACACTTTGG TTTGTTCATC 361 TCTGGGGTCA AGTTTTTGCA AGGCATCAAT TTCTCTGTAT TGCCTTTTCC CTCTTGATGA 421 TCACATGTAA TTTATAGAGT TTATCTTTAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 95617 to 91687): Exon 1 95017 94962 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92537 ( 392 n); cDNA 57 448 ( 392 n); score: 1.000 PPA cDNA 449 472 MATCH C09HBa0278J12.1- SGN-E551822+ 1.000 448 0.949 C PGS_C09HBa0278J12.1-_SGN-E551822+ (95017 94962,92928 92537) Alignment (genomic DNA sequence = upper lines): GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 94958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAG.... 56 TGACTAGTAC TATATTTCCA CTCCTCATTT CGTGTAATTT GGGTTTTTGC CTGATTTTTA 94898 .......... .......... .......... .......... .......... .......... 56 ATTGGGTTTA TTTGAAAAAA TTGATCGTTG AAACTTCGTG TGGGTCGACT TTCATTGTAG 94838 .......... .......... .......... .......... .......... .......... 56 TTTGATAATG TTTACACTGA CAGATTGATA GGATTTTAGC GTAAACCTAT TCTTTTATTC 94778 .......... .......... .......... .......... .......... .......... 56 GGGATGTGCT ATGCTCTGCA AGGAGTTGTT TTGTTTGGAA TAGTGTAGTC ATTCACGCAT 94718 .......... .......... .......... .......... .......... .......... 56 TGAGCTTTGA GTCAGTTGAT AATGGGTTAA AATAGAGTTC TTTTTGCAGT TTATTTTAGT 94658 .......... .......... .......... .......... .......... .......... 56 TATCAATAGT GATGATGATT GTGTGTTTGT GTTATGTCAT TCTACTGCTT GTTTATTCAA 94598 .......... .......... .......... .......... .......... .......... 56 AATATTATCC TATTTACATT GAGAAATAAG GAGAAATAGA AGAACTAAAA CAGCAGCGTA 94538 .......... .......... .......... .......... .......... .......... 56 ATATCTTGTA GGTAACCATT TGTATCTTGA ACTAGGTATC CTAATTATCC TTGTAGCTCT 94478 .......... .......... .......... .......... .......... .......... 56 TGCTGAACTT ATGGAACAGA TAGTCTATGA GCTCTACACT TCAACGTCCA AGATTAGAAA 94418 .......... .......... .......... .......... .......... .......... 56 TCGGGGTTGG CTTTTATCGT ACTTGGATTA TTTTCACAAC TGACAGATTG AAATTAACTT 94358 .......... .......... .......... .......... .......... .......... 56 ATCATAGCCT CTTTTATTGT GGCTTGTTTC TGCTTTACCA AGAGCTCTTA TTTGGAATAG 94298 .......... .......... .......... .......... .......... .......... 56 TGCATTCATT TATATTTTAA GCTCAGAGTA GATTAACAGT GGTTTTCAAA AGAGGTCCTT 94238 .......... .......... .......... .......... .......... .......... 56 TTTGCTGTTT ATTTTAGTTT GAGTGCCCTG CACTGCAAGT CTAATAAATA AGCCCTTCTA 94178 .......... .......... .......... .......... .......... .......... 56 TTCTGGAGTT ATTACATTGA AGAGGATGAG CTTATGTCAT TCTACTTTTC GTTCATCTAA 94118 .......... .......... .......... .......... .......... .......... 56 TGCATTATCT TACTTACATT GAGAAGCAAA GAAATAACAG AAAAATTATG GTGGCGTAGT 94058 .......... .......... .......... .......... .......... .......... 56 ATCTTGTAGT TATTCGTAAA TCCAACTGTT TATCTTGTAA TTATCCGTAA ATCCAACTGT 93998 .......... .......... .......... .......... .......... .......... 56 TGGTCTTCTC ATATAGCAGG TTCAACCAGG CCCCAGTAAC CACTGTTACA TTTTTGGACT 93938 .......... .......... .......... .......... .......... .......... 56 GTTGTCTGCT CTTTAGTTAT TTAGTAAATT TTTATAAATT AGCAGACCCC TTCTTTTGCT 93878 .......... .......... .......... .......... .......... .......... 56 TGCATCTTCT TGATGCCTTC TAATGAAATC TCTTTCATCT AAAAAAGATA TTCATAACTT 93818 .......... .......... .......... .......... .......... .......... 56 GAATAGGGTA TGTGCATAAT GTTATATAAT TATAATAATC CTCACAGATC TTCCTGAATT 93758 .......... .......... .......... .......... .......... .......... 56 TATGTTCAGA TTGTCAGTGA GCATTAGCTA GATTGTTTGG CTCCTCCCAC TTCTCAGTGA 93698 .......... .......... .......... .......... .......... .......... 56 AGTAGATTCT TAAGTAGGCG GTTGTTGATG AGACCAATTA GACTGCAACC TAGCCTTTCA 93638 .......... .......... .......... .......... .......... .......... 56 CTTGTGTCCA TTAGTTTGCG TCAAGTGCAA TTTTGTTGAT TTCATCTTTT ACATCCATAA 93578 .......... .......... .......... .......... .......... .......... 56 TCACACAGAA TAGTACACTT GGATTATGTC AAATTACATG TGAAATAGGC TTGGAAGAAC 93518 .......... .......... .......... .......... .......... .......... 56 TAATATGTAT TAAGTTTGTA ACTTGAAAGA GATAGGTAAC TAACATGTAA GCAGGCTTAG 93458 .......... .......... .......... .......... .......... .......... 56 TTATAGGTAA TTGATAATAT TGATCATTAT AGATGCTCTT GCTAACTGAA ACATCCTTCA 93398 .......... .......... .......... .......... .......... .......... 56 GGGCGTGTAA AGCATATTTT CATGTATTTT TTGTTGGGTT CTGAAGAAAG TCTTCATTTT 93338 .......... .......... .......... .......... .......... .......... 56 TTATGTAAGT TTGATGCAGC TGAGTAGAAT CTATAGTGGT ATTCTTGTTT CATCTGATGT 93278 .......... .......... .......... .......... .......... .......... 56 ATGTTTCTAA GCTTGTTCTG GAAGTGACAT CAACCACTTA TTAGCATCAC CATTTACCTA 93218 .......... .......... .......... .......... .......... .......... 56 GCACATTTTT GGTTCAAGTG ATAGTCCAAA GGCTACTTGT AAAAGAAACT GATACTCTAA 93158 .......... .......... .......... .......... .......... .......... 56 AGAGAACCAA ATGTCCAACA TATTTATCAT ATTACTTTTT TTTTTTTGCA ATTTCTGTAT 93098 .......... .......... .......... .......... .......... .......... 56 GCGCGATTAA TGAAAAAAGC TATTGTGATG TTGCATTACT ACTGCTATAT ATTTTATTAA 93038 .......... .......... .......... .......... .......... .......... 56 TCCTCTTCCC CCACTAAAAC CAAAAGAAAG ACTGTTAGAA GTAGTGAATT CAGGCAATTC 92978 .......... .......... .......... .......... .......... .......... 56 AAGACTAGTA AACAATGCTC TACTTACAAT TTTTTCTTCT ACTTTTCAGG TACCTCAAAT 92918 | |||||||||| .......... .......... .......... .......... .........G TACCTCAAAT 67 ACCTTGTCAA AAAGTACTTG AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT 92858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGTCAA AAAGTACTTG AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT 127 CCAACAAGGA CAGGAATGTT TATGAGTTGC GCTACTTCAA CATTGCCGAG AATGAAGCAG 92798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACAAGGA CAGGAATGTT TATGAGTTGC GCTACTTCAA CATTGCCGAG AATGAAGCAG 187 ATGAAGAAGA TTAAACATGT CTAGTCAATG TCCCTTTTAT CTTCTTATTT TGAACCTTAT 92738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGAAGA TTAAACATGT CTAGTCAATG TCCCTTTTAT CTTCTTATTT TGAACCTTAT 247 ATCATCTGTT TGAGTTATTA ATGAGCCGTA TCTTCTCATT TCCAGATTAT TGATTTTTTG 92678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCTGTT TGAGTTATTA ATGAGCCGTA TCTTCTCATT TCCAGATTAT TGATTTTTTG 307 TCCCCTTATC AGTAAAAGAA AACGTTACTT TGATACACTT TGGTTTGTTC ATCTCTGGGG 92618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCTTATC AGTAAAAGAA AACGTTACTT TGATACACTT TGGTTTGTTC ATCTCTGGGG 367 TCAAGTTTTT GCAAGGCATC AATTTCTCTG TATTGCCTTT TCCCTCTTGA TGATCACATG 92558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTTTTT GCAAGGCATC AATTTCTCTG TATTGCCTTT TCCCTCTTGA TGATCACATG 427 TAATTTATAG AGTTTATCTT T 92537 |||||||||| |||||||||| | TAATTTATAG AGTTTATCTT T 448 hqPGS_C09HBa0278J12.1-_SGN-E551822+ (95017 94962,92928 92537) ******************************************************************************** EST sequence 251 +strand 471 n (File: SGN-E553003+) 1 GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 61 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAACAACG TTAGGGATTG GCTTAGGGTG 121 ATTGCTTCCA ACAAGGACAG GAATGTTTAT GAGTTGCGCT ACTTCAACAT TGCCGAGAAT 181 GAAGCAGATG AAGAAGATTA AACATGTCTA GTCAATGTCC CTTTTATCTT CTTATTTTGA 241 ACCTTATATC ATCTGTTTGA GTTATTAATG AGCCGTATCT TCTCATTTCC AGATTATTGA 301 TTTTTTGTCC CCTTATCAGT AAAAGAAAAC GTTACTTTGA TACACTTTGG TTTGTTCATC 361 TCTGGGGTCA AGTTTTTGCA AGGCATCAAT TTCTCTGTAT TGCCTTTTCC CTCTTGATGA 421 TCACATGTAA TTTATAGAGT TTATCTTTAA AAAAAAAAAA AACAAAAAAC A Predicted gene structure (within gDNA segment 95617 to 91697): Exon 1 95017 94962 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92537 ( 392 n); cDNA 57 448 ( 392 n); score: 1.000 PPA cDNA 449 469 MATCH C09HBa0278J12.1- SGN-E553003+ 1.000 448 0.951 C PGS_C09HBa0278J12.1-_SGN-E553003+ (95017 94962,92928 92537) Alignment (genomic DNA sequence = upper lines): GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 94958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAG.... 56 TGACTAGTAC TATATTTCCA CTCCTCATTT CGTGTAATTT GGGTTTTTGC CTGATTTTTA 94898 .......... .......... .......... .......... .......... .......... 56 ATTGGGTTTA TTTGAAAAAA TTGATCGTTG AAACTTCGTG TGGGTCGACT TTCATTGTAG 94838 .......... .......... .......... .......... .......... .......... 56 TTTGATAATG TTTACACTGA CAGATTGATA GGATTTTAGC GTAAACCTAT TCTTTTATTC 94778 .......... .......... .......... .......... .......... .......... 56 GGGATGTGCT ATGCTCTGCA AGGAGTTGTT TTGTTTGGAA TAGTGTAGTC ATTCACGCAT 94718 .......... .......... .......... .......... .......... .......... 56 TGAGCTTTGA GTCAGTTGAT AATGGGTTAA AATAGAGTTC TTTTTGCAGT TTATTTTAGT 94658 .......... .......... .......... .......... .......... .......... 56 TATCAATAGT GATGATGATT GTGTGTTTGT GTTATGTCAT TCTACTGCTT GTTTATTCAA 94598 .......... .......... .......... .......... .......... .......... 56 AATATTATCC TATTTACATT GAGAAATAAG GAGAAATAGA AGAACTAAAA CAGCAGCGTA 94538 .......... .......... .......... .......... .......... .......... 56 ATATCTTGTA GGTAACCATT TGTATCTTGA ACTAGGTATC CTAATTATCC TTGTAGCTCT 94478 .......... .......... .......... .......... .......... .......... 56 TGCTGAACTT ATGGAACAGA TAGTCTATGA GCTCTACACT TCAACGTCCA AGATTAGAAA 94418 .......... .......... .......... .......... .......... .......... 56 TCGGGGTTGG CTTTTATCGT ACTTGGATTA TTTTCACAAC TGACAGATTG AAATTAACTT 94358 .......... .......... .......... .......... .......... .......... 56 ATCATAGCCT CTTTTATTGT GGCTTGTTTC TGCTTTACCA AGAGCTCTTA TTTGGAATAG 94298 .......... .......... .......... .......... .......... .......... 56 TGCATTCATT TATATTTTAA GCTCAGAGTA GATTAACAGT GGTTTTCAAA AGAGGTCCTT 94238 .......... .......... .......... .......... .......... .......... 56 TTTGCTGTTT ATTTTAGTTT GAGTGCCCTG CACTGCAAGT CTAATAAATA AGCCCTTCTA 94178 .......... .......... .......... .......... .......... .......... 56 TTCTGGAGTT ATTACATTGA AGAGGATGAG CTTATGTCAT TCTACTTTTC GTTCATCTAA 94118 .......... .......... .......... .......... .......... .......... 56 TGCATTATCT TACTTACATT GAGAAGCAAA GAAATAACAG AAAAATTATG GTGGCGTAGT 94058 .......... .......... .......... .......... .......... .......... 56 ATCTTGTAGT TATTCGTAAA TCCAACTGTT TATCTTGTAA TTATCCGTAA ATCCAACTGT 93998 .......... .......... .......... .......... .......... .......... 56 TGGTCTTCTC ATATAGCAGG TTCAACCAGG CCCCAGTAAC CACTGTTACA TTTTTGGACT 93938 .......... .......... .......... .......... .......... .......... 56 GTTGTCTGCT CTTTAGTTAT TTAGTAAATT TTTATAAATT AGCAGACCCC TTCTTTTGCT 93878 .......... .......... .......... .......... .......... .......... 56 TGCATCTTCT TGATGCCTTC TAATGAAATC TCTTTCATCT AAAAAAGATA TTCATAACTT 93818 .......... .......... .......... .......... .......... .......... 56 GAATAGGGTA TGTGCATAAT GTTATATAAT TATAATAATC CTCACAGATC TTCCTGAATT 93758 .......... .......... .......... .......... .......... .......... 56 TATGTTCAGA TTGTCAGTGA GCATTAGCTA GATTGTTTGG CTCCTCCCAC TTCTCAGTGA 93698 .......... .......... .......... .......... .......... .......... 56 AGTAGATTCT TAAGTAGGCG GTTGTTGATG AGACCAATTA GACTGCAACC TAGCCTTTCA 93638 .......... .......... .......... .......... .......... .......... 56 CTTGTGTCCA TTAGTTTGCG TCAAGTGCAA TTTTGTTGAT TTCATCTTTT ACATCCATAA 93578 .......... .......... .......... .......... .......... .......... 56 TCACACAGAA TAGTACACTT GGATTATGTC AAATTACATG TGAAATAGGC TTGGAAGAAC 93518 .......... .......... .......... .......... .......... .......... 56 TAATATGTAT TAAGTTTGTA ACTTGAAAGA GATAGGTAAC TAACATGTAA GCAGGCTTAG 93458 .......... .......... .......... .......... .......... .......... 56 TTATAGGTAA TTGATAATAT TGATCATTAT AGATGCTCTT GCTAACTGAA ACATCCTTCA 93398 .......... .......... .......... .......... .......... .......... 56 GGGCGTGTAA AGCATATTTT CATGTATTTT TTGTTGGGTT CTGAAGAAAG TCTTCATTTT 93338 .......... .......... .......... .......... .......... .......... 56 TTATGTAAGT TTGATGCAGC TGAGTAGAAT CTATAGTGGT ATTCTTGTTT CATCTGATGT 93278 .......... .......... .......... .......... .......... .......... 56 ATGTTTCTAA GCTTGTTCTG GAAGTGACAT CAACCACTTA TTAGCATCAC CATTTACCTA 93218 .......... .......... .......... .......... .......... .......... 56 GCACATTTTT GGTTCAAGTG ATAGTCCAAA GGCTACTTGT AAAAGAAACT GATACTCTAA 93158 .......... .......... .......... .......... .......... .......... 56 AGAGAACCAA ATGTCCAACA TATTTATCAT ATTACTTTTT TTTTTTTGCA ATTTCTGTAT 93098 .......... .......... .......... .......... .......... .......... 56 GCGCGATTAA TGAAAAAAGC TATTGTGATG TTGCATTACT ACTGCTATAT ATTTTATTAA 93038 .......... .......... .......... .......... .......... .......... 56 TCCTCTTCCC CCACTAAAAC CAAAAGAAAG ACTGTTAGAA GTAGTGAATT CAGGCAATTC 92978 .......... .......... .......... .......... .......... .......... 56 AAGACTAGTA AACAATGCTC TACTTACAAT TTTTTCTTCT ACTTTTCAGG TACCTCAAAT 92918 | |||||||||| .......... .......... .......... .......... .........G TACCTCAAAT 67 ACCTTGTCAA AAAGTACTTG AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT 92858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGTCAA AAAGTACTTG AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT 127 CCAACAAGGA CAGGAATGTT TATGAGTTGC GCTACTTCAA CATTGCCGAG AATGAAGCAG 92798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACAAGGA CAGGAATGTT TATGAGTTGC GCTACTTCAA CATTGCCGAG AATGAAGCAG 187 ATGAAGAAGA TTAAACATGT CTAGTCAATG TCCCTTTTAT CTTCTTATTT TGAACCTTAT 92738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGAAGA TTAAACATGT CTAGTCAATG TCCCTTTTAT CTTCTTATTT TGAACCTTAT 247 ATCATCTGTT TGAGTTATTA ATGAGCCGTA TCTTCTCATT TCCAGATTAT TGATTTTTTG 92678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCTGTT TGAGTTATTA ATGAGCCGTA TCTTCTCATT TCCAGATTAT TGATTTTTTG 307 TCCCCTTATC AGTAAAAGAA AACGTTACTT TGATACACTT TGGTTTGTTC ATCTCTGGGG 92618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCTTATC AGTAAAAGAA AACGTTACTT TGATACACTT TGGTTTGTTC ATCTCTGGGG 367 TCAAGTTTTT GCAAGGCATC AATTTCTCTG TATTGCCTTT TCCCTCTTGA TGATCACATG 92558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTTTTT GCAAGGCATC AATTTCTCTG TATTGCCTTT TCCCTCTTGA TGATCACATG 427 TAATTTATAG AGTTTATCTT T 92537 |||||||||| |||||||||| | TAATTTATAG AGTTTATCTT T 448 hqPGS_C09HBa0278J12.1-_SGN-E553003+ (95017 94962,92928 92537) ******************************************************************************** EST sequence 382 +strand 667 n (File: SGN-E345647+) 1 CACTCACACT AGGCCGTGGA CGTCGAGTTT CATCCTCAGA AGAGAAATAC AGAGAGTGTA 61 AAGATGAGCC GAGCAGCAGC AGCAGCAGTG AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC 121 GTCATTGACT GTTCGAAGCC GGTAGAAGAC AGTATCATGG AGATTGCTTC TCTTGACAAG 181 TTCCTTCAAG AGAGGATTAA GGTTGGTGGA AAAGCTGGTG CTCTTGGGGA TTCCGTTACT 241 GTTACTCGTG ACAAGAACAA GATCACCGTC ACCTGCAACT CAACTTTTTC CAAGAGGTAC 301 CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG GCTTAGGGTG 361 ATTGCTTCCA ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT TGCTGAGAAT 421 GAAGCAGATG AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT TCTTTCTTTA 481 GTCGGCCTTC ACTTTTTGAT CCTTGTATCA TCACTAATGA ATCCTGTCTT CTCATTTCTA 541 GATTNTGTTT TTGCAGTTTG CTTATCAGTA AAAGAAAACA TTACATCGAT ACTTTGGTTT 601 GTCTATCTTT GGGGATAATT ATGAAAATGT CAATTTATCT GAATTGCCTT TCTCCTCTGG 661 ATGATCT Predicted gene structure (within gDNA segment 96367 to 89959): Exon 1 95216 94962 ( 255 n); cDNA 37 296 ( 260 n); score: 0.888 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 2 92928 92563 ( 366 n); cDNA 297 666 ( 370 n); score: 0.773 MATCH C09HBa0278J12.1- SGN-E345647+ 0.820 621 0.931 C PGS_C09HBa0278J12.1-_SGN-E345647+ (95216 94962,92928 92563) Alignment (genomic DNA sequence = upper lines): CAGAAGAGAA AT-CA-AGAG CGTAAAGATG AGCC--G-AG CAGCAGCAGC AGTGAAGGGC 95162 |||||||||| || || |||| ||||||||| |||| | || |||||||||| |||||||||| CAGAAGAGAA ATACAGAGAG TGTAAAGATG AGCCGAGCAG CAGCAGCAGC AGTGAAGGGC 96 GGGAAGAAGA AGGGGGCAAG CTTCGTCATC GACTGTTCGA AGCCAGTGGA GGACAGTATT 95102 |||||||||| |||||||||| ||||||||| |||||||||| |||| || || |||||||| GGGAAGAAGA AGGGGGCAAG CTTCGTCATT GACTGTTCGA AGCCGGTAGA AGACAGTATC 156 ATGGAGATTG CTTCTCTTGA CAAGTTCCTC CAAGAGAGAA TTAAGGTTGG TGGAAAAGCT 95042 |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| ATGGAGATTG CTTCTCTTGA CAAGTTCCTT CAAGAGAGGA TTAAGGTTGG TGGAAAAGCT 216 GGTGCACTTG GAGATTCCGT TACTGTCACT CGTGATAAGA ATAAAATCAC CGTCACTTGC 94982 ||||| |||| | |||||||| |||||| ||| ||||| |||| | || ||||| |||||| ||| GGTGCTCTTG GGGATTCCGT TACTGTTACT CGTGACAAGA ACAAGATCAC CGTCACCTGC 276 AACTCCACTT TTTCCAAGAG GTACTGACTA GTACTATATT TCCACTCCTC ATTTCGTGTA 94922 ||||| |||| |||||||||| AACTCAACTT TTTCCAAGAG .......... .......... .......... .......... 296 ATTTGGGTTT TTGCCTGATT TTTAATTGGG TTTATTTGAA AAAATTGATC GTTGAAACTT 94862 .......... .......... .......... .......... .......... .......... 296 CGTGTGGGTC GACTTTCATT GTAGTTTGAT AATGTTTACA CTGACAGATT GATAGGATTT 94802 .......... .......... .......... .......... .......... .......... 296 TAGCGTAAAC CTATTCTTTT ATTCGGGATG TGCTATGCTC TGCAAGGAGT TGTTTTGTTT 94742 .......... .......... .......... .......... .......... .......... 296 GGAATAGTGT AGTCATTCAC GCATTGAGCT TTGAGTCAGT TGATAATGGG TTAAAATAGA 94682 .......... .......... .......... .......... .......... .......... 296 GTTCTTTTTG CAGTTTATTT TAGTTATCAA TAGTGATGAT GATTGTGTGT TTGTGTTATG 94622 .......... .......... .......... .......... .......... .......... 296 TCATTCTACT GCTTGTTTAT TCAAAATATT ATCCTATTTA CATTGAGAAA TAAGGAGAAA 94562 .......... .......... .......... .......... .......... .......... 296 TAGAAGAACT AAAACAGCAG CGTAATATCT TGTAGGTAAC CATTTGTATC TTGAACTAGG 94502 .......... .......... .......... .......... .......... .......... 296 TATCCTAATT ATCCTTGTAG CTCTTGCTGA ACTTATGGAA CAGATAGTCT ATGAGCTCTA 94442 .......... .......... .......... .......... .......... .......... 296 CACTTCAACG TCCAAGATTA GAAATCGGGG TTGGCTTTTA TCGTACTTGG ATTATTTTCA 94382 .......... .......... .......... .......... .......... .......... 296 CAACTGACAG ATTGAAATTA ACTTATCATA GCCTCTTTTA TTGTGGCTTG TTTCTGCTTT 94322 .......... .......... .......... .......... .......... .......... 296 ACCAAGAGCT CTTATTTGGA ATAGTGCATT CATTTATATT TTAAGCTCAG AGTAGATTAA 94262 .......... .......... .......... .......... .......... .......... 296 CAGTGGTTTT CAAAAGAGGT CCTTTTTGCT GTTTATTTTA GTTTGAGTGC CCTGCACTGC 94202 .......... .......... .......... .......... .......... .......... 296 AAGTCTAATA AATAAGCCCT TCTATTCTGG AGTTATTACA TTGAAGAGGA TGAGCTTATG 94142 .......... .......... .......... .......... .......... .......... 296 TCATTCTACT TTTCGTTCAT CTAATGCATT ATCTTACTTA CATTGAGAAG CAAAGAAATA 94082 .......... .......... .......... .......... .......... .......... 296 ACAGAAAAAT TATGGTGGCG TAGTATCTTG TAGTTATTCG TAAATCCAAC TGTTTATCTT 94022 .......... .......... .......... .......... .......... .......... 296 GTAATTATCC GTAAATCCAA CTGTTGGTCT TCTCATATAG CAGGTTCAAC CAGGCCCCAG 93962 .......... .......... .......... .......... .......... .......... 296 TAACCACTGT TACATTTTTG GACTGTTGTC TGCTCTTTAG TTATTTAGTA AATTTTTATA 93902 .......... .......... .......... .......... .......... .......... 296 AATTAGCAGA CCCCTTCTTT TGCTTGCATC TTCTTGATGC CTTCTAATGA AATCTCTTTC 93842 .......... .......... .......... .......... .......... .......... 296 ATCTAAAAAA GATATTCATA ACTTGAATAG GGTATGTGCA TAATGTTATA TAATTATAAT 93782 .......... .......... .......... .......... .......... .......... 296 AATCCTCACA GATCTTCCTG AATTTATGTT CAGATTGTCA GTGAGCATTA GCTAGATTGT 93722 .......... .......... .......... .......... .......... .......... 296 TTGGCTCCTC CCACTTCTCA GTGAAGTAGA TTCTTAAGTA GGCGGTTGTT GATGAGACCA 93662 .......... .......... .......... .......... .......... .......... 296 ATTAGACTGC AACCTAGCCT TTCACTTGTG TCCATTAGTT TGCGTCAAGT GCAATTTTGT 93602 .......... .......... .......... .......... .......... .......... 296 TGATTTCATC TTTTACATCC ATAATCACAC AGAATAGTAC ACTTGGATTA TGTCAAATTA 93542 .......... .......... .......... .......... .......... .......... 296 CATGTGAAAT AGGCTTGGAA GAACTAATAT GTATTAAGTT TGTAACTTGA AAGAGATAGG 93482 .......... .......... .......... .......... .......... .......... 296 TAACTAACAT GTAAGCAGGC TTAGTTATAG GTAATTGATA ATATTGATCA TTATAGATGC 93422 .......... .......... .......... .......... .......... .......... 296 TCTTGCTAAC TGAAACATCC TTCAGGGCGT GTAAAGCATA TTTTCATGTA TTTTTTGTTG 93362 .......... .......... .......... .......... .......... .......... 296 GGTTCTGAAG AAAGTCTTCA TTTTTTATGT AAGTTTGATG CAGCTGAGTA GAATCTATAG 93302 .......... .......... .......... .......... .......... .......... 296 TGGTATTCTT GTTTCATCTG ATGTATGTTT CTAAGCTTGT TCTGGAAGTG ACATCAACCA 93242 .......... .......... .......... .......... .......... .......... 296 CTTATTAGCA TCACCATTTA CCTAGCACAT TTTTGGTTCA AGTGATAGTC CAAAGGCTAC 93182 .......... .......... .......... .......... .......... .......... 296 TTGTAAAAGA AACTGATACT CTAAAGAGAA CCAAATGTCC AACATATTTA TCATATTACT 93122 .......... .......... .......... .......... .......... .......... 296 TTTTTTTTTT TGCAATTTCT GTATGCGCGA TTAATGAAAA AAGCTATTGT GATGTTGCAT 93062 .......... .......... .......... .......... .......... .......... 296 TACTACTGCT ATATATTTTA TTAATCCTCT TCCCCCACTA AAACCAAAAG AAAGACTGTT 93002 .......... .......... .......... .......... .......... .......... 296 AGAAGTAGTG AATTCAGGCA ATTCAAGACT AGTAAACAAT GCTCTACTTA CAATTTTTTC 92942 .......... .......... .......... .......... .......... .......... 296 TTCTACTTTT CAGGTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA AACAACGTTA 92882 ||||||| |||||||||| |||||||||| |||||||||| || ||||| | .......... ...GTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA AATAACGTCA 343 GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTATGAG TTGCGCTACT 92822 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTACGAA TTGCGCTACT 403 TCAACATTGC CGAGAATGAA GCAGATGAAG AAGATTAAAC ATGTCTAGTC AATGTCCCT- 92763 |||||||||| ||||||||| |||||||||| |||||||||| ||| | | || |||||| || TCAACATTGC TGAGAATGAA GCAGATGAAG AAGATTAAAC ATGACCATTC AATGTCTCTC 463 TTTATCTTC- TTATTT--TG AACCTT-A-- -TATCAT-C- TGTTTGAGTT ATTAATGAGC 92712 ||||||||| || ||| | |||| | | | || | ||| | | | | |||||| TTTATCTTCT TTCTTTAGTC GGCCTTCACT TTTTGATCCT TGTATCA-TC ACTAATGAAT 522 CGTATCTTCT CATTTCCAGA TTATTGATTT TTTGTCCCCT TATCAGTAAA AGAAAACGTT 92652 | | |||||| |||||| ||| || | ||| || || |||||||||| ||||||| || CCTGTCTTCT CATTTCTAGA TTNTGTTTTT GCAGTTTGCT TATCAGTAAA AGAAAACATT 582 ACTTTGATAC ACTTTGGTTT GTTCATCTCT GGGGTCAAGT TTTTGCAAGG CATCAATTTC 92592 || | ||| |||||||||| || |||| | |||| || || || || ||||||| ACATCGAT-- ACTTTGGTTT GTCTATCTTT GGGGATAA-- TTATG-AAAA TGTCAATTTA 637 TCTGTATTGC CTTTTCCCTC TTGATGATC 92563 |||| ||||| |||| |||| | ||||||| TCTGAATTGC CTTTCTCCTC TGGATGATC 666 hqPGS_C09HBa0278J12.1-_SGN-E345647+ (95216 94962,92928 92563) ******************************************************************************** EST sequence 204 +strand 432 n (File: SGN-E352396+) 1 TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT TTTTCCAAGA 61 GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA CAACGTTAGG GATTGGCTTA 121 GGGTGATTGC TTCCAACAAG GACAGGAATG TTTATGAGTT GCGCTACTTC AACATTGCCG 181 AGAATGAAGC AGATGAAGAA GATTAAACAT GTCTAGTCAA TGTCCCTTTT ATCTTCTTAT 241 TTTGAACCTT ATATCATCTG TTTGAGTTAT TAATGAGCCG TATCTTCTCA TTTCCAGATT 301 ATTGATTTTT TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC TTTGGTTTGT 361 TCATCTCTGG GGTCAAGTTT TTGCAAGGCA TCAATTTCTC TGTATTGCCT TTTCCCTCTT 421 GAAAAAAAAA AA Predicted gene structure (within gDNA segment 95622 to 91858): Exon 1 95022 94962 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92568 ( 361 n); cDNA 62 422 ( 361 n); score: 1.000 PPA cDNA 423 432 MATCH C09HBa0278J12.1- SGN-E352396+ 1.000 422 0.977 C PGS_C09HBa0278J12.1-_SGN-E352396+ (95022 94962,92928 92568) Alignment (genomic DNA sequence = upper lines): TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT TTTTCCAAGA 94963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT TTTTCCAAGA 60 GGTACTGACT AGTACTATAT TTCCACTCCT CATTTCGTGT AATTTGGGTT TTTGCCTGAT 94903 | G......... .......... .......... .......... .......... .......... 61 TTTTAATTGG GTTTATTTGA AAAAATTGAT CGTTGAAACT TCGTGTGGGT CGACTTTCAT 94843 .......... .......... .......... .......... .......... .......... 61 TGTAGTTTGA TAATGTTTAC ACTGACAGAT TGATAGGATT TTAGCGTAAA CCTATTCTTT 94783 .......... .......... .......... .......... .......... .......... 61 TATTCGGGAT GTGCTATGCT CTGCAAGGAG TTGTTTTGTT TGGAATAGTG TAGTCATTCA 94723 .......... .......... .......... .......... .......... .......... 61 CGCATTGAGC TTTGAGTCAG TTGATAATGG GTTAAAATAG AGTTCTTTTT GCAGTTTATT 94663 .......... .......... .......... .......... .......... .......... 61 TTAGTTATCA ATAGTGATGA TGATTGTGTG TTTGTGTTAT GTCATTCTAC TGCTTGTTTA 94603 .......... .......... .......... .......... .......... .......... 61 TTCAAAATAT TATCCTATTT ACATTGAGAA ATAAGGAGAA ATAGAAGAAC TAAAACAGCA 94543 .......... .......... .......... .......... .......... .......... 61 GCGTAATATC TTGTAGGTAA CCATTTGTAT CTTGAACTAG GTATCCTAAT TATCCTTGTA 94483 .......... .......... .......... .......... .......... .......... 61 GCTCTTGCTG AACTTATGGA ACAGATAGTC TATGAGCTCT ACACTTCAAC GTCCAAGATT 94423 .......... .......... .......... .......... .......... .......... 61 AGAAATCGGG GTTGGCTTTT ATCGTACTTG GATTATTTTC ACAACTGACA GATTGAAATT 94363 .......... .......... .......... .......... .......... .......... 61 AACTTATCAT AGCCTCTTTT ATTGTGGCTT GTTTCTGCTT TACCAAGAGC TCTTATTTGG 94303 .......... .......... .......... .......... .......... .......... 61 AATAGTGCAT TCATTTATAT TTTAAGCTCA GAGTAGATTA ACAGTGGTTT TCAAAAGAGG 94243 .......... .......... .......... .......... .......... .......... 61 TCCTTTTTGC TGTTTATTTT AGTTTGAGTG CCCTGCACTG CAAGTCTAAT AAATAAGCCC 94183 .......... .......... .......... .......... .......... .......... 61 TTCTATTCTG GAGTTATTAC ATTGAAGAGG ATGAGCTTAT GTCATTCTAC TTTTCGTTCA 94123 .......... .......... .......... .......... .......... .......... 61 TCTAATGCAT TATCTTACTT ACATTGAGAA GCAAAGAAAT AACAGAAAAA TTATGGTGGC 94063 .......... .......... .......... .......... .......... .......... 61 GTAGTATCTT GTAGTTATTC GTAAATCCAA CTGTTTATCT TGTAATTATC CGTAAATCCA 94003 .......... .......... .......... .......... .......... .......... 61 ACTGTTGGTC TTCTCATATA GCAGGTTCAA CCAGGCCCCA GTAACCACTG TTACATTTTT 93943 .......... .......... .......... .......... .......... .......... 61 GGACTGTTGT CTGCTCTTTA GTTATTTAGT AAATTTTTAT AAATTAGCAG ACCCCTTCTT 93883 .......... .......... .......... .......... .......... .......... 61 TTGCTTGCAT CTTCTTGATG CCTTCTAATG AAATCTCTTT CATCTAAAAA AGATATTCAT 93823 .......... .......... .......... .......... .......... .......... 61 AACTTGAATA GGGTATGTGC ATAATGTTAT ATAATTATAA TAATCCTCAC AGATCTTCCT 93763 .......... .......... .......... .......... .......... .......... 61 GAATTTATGT TCAGATTGTC AGTGAGCATT AGCTAGATTG TTTGGCTCCT CCCACTTCTC 93703 .......... .......... .......... .......... .......... .......... 61 AGTGAAGTAG ATTCTTAAGT AGGCGGTTGT TGATGAGACC AATTAGACTG CAACCTAGCC 93643 .......... .......... .......... .......... .......... .......... 61 TTTCACTTGT GTCCATTAGT TTGCGTCAAG TGCAATTTTG TTGATTTCAT CTTTTACATC 93583 .......... .......... .......... .......... .......... .......... 61 CATAATCACA CAGAATAGTA CACTTGGATT ATGTCAAATT ACATGTGAAA TAGGCTTGGA 93523 .......... .......... .......... .......... .......... .......... 61 AGAACTAATA TGTATTAAGT TTGTAACTTG AAAGAGATAG GTAACTAACA TGTAAGCAGG 93463 .......... .......... .......... .......... .......... .......... 61 CTTAGTTATA GGTAATTGAT AATATTGATC ATTATAGATG CTCTTGCTAA CTGAAACATC 93403 .......... .......... .......... .......... .......... .......... 61 CTTCAGGGCG TGTAAAGCAT ATTTTCATGT ATTTTTTGTT GGGTTCTGAA GAAAGTCTTC 93343 .......... .......... .......... .......... .......... .......... 61 ATTTTTTATG TAAGTTTGAT GCAGCTGAGT AGAATCTATA GTGGTATTCT TGTTTCATCT 93283 .......... .......... .......... .......... .......... .......... 61 GATGTATGTT TCTAAGCTTG TTCTGGAAGT GACATCAACC ACTTATTAGC ATCACCATTT 93223 .......... .......... .......... .......... .......... .......... 61 ACCTAGCACA TTTTTGGTTC AAGTGATAGT CCAAAGGCTA CTTGTAAAAG AAACTGATAC 93163 .......... .......... .......... .......... .......... .......... 61 TCTAAAGAGA ACCAAATGTC CAACATATTT ATCATATTAC TTTTTTTTTT TTGCAATTTC 93103 .......... .......... .......... .......... .......... .......... 61 TGTATGCGCG ATTAATGAAA AAAGCTATTG TGATGTTGCA TTACTACTGC TATATATTTT 93043 .......... .......... .......... .......... .......... .......... 61 ATTAATCCTC TTCCCCCACT AAAACCAAAA GAAAGACTGT TAGAAGTAGT GAATTCAGGC 92983 .......... .......... .......... .......... .......... .......... 61 AATTCAAGAC TAGTAAACAA TGCTCTACTT ACAATTTTTT CTTCTACTTT TCAGGTACCT 92923 |||||| .......... .......... .......... .......... .......... ....GTACCT 67 CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT 92863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT 127 TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA 92803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA 187 AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC 92743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC 247 CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATT 92683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATT 307 TTTTGTCCCC TTATCAGTAA AAGAAAACGT TACTTTGATA CACTTTGGTT TGTTCATCTC 92623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTCCCC TTATCAGTAA AAGAAAACGT TACTTTGATA CACTTTGGTT TGTTCATCTC 367 TGGGGTCAAG TTTTTGCAAG GCATCAATTT CTCTGTATTG CCTTTTCCCT CTTGA 92568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGGGGTCAAG TTTTTGCAAG GCATCAATTT CTCTGTATTG CCTTTTCCCT CTTGA 422 hqPGS_C09HBa0278J12.1-_SGN-E352396+ (95022 94962,92928 92568) ******************************************************************************** EST sequence 275 +strand 609 n (File: SGN-E353870+) 1 AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG 61 AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG 121 ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT 181 CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA 241 ACTTTTTCCA AGAGGTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAATAACGTC 301 AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTACGA ATTGCGCTAC 361 TTCAACATTG CTGAGAATGA AGCAGATGAA GAAGATTAAA CATGACCATT CAATGTCTCT 421 CTTTATCTTC TTTCTTTAGT CGGCCTTCAC TTTTTGATCC TTGTATCATC ACTAATGAAT 481 CCTGTCTTCT CATTTCTAGA TTTTGTTTTT GCAGTTTGCT TATCAGTAAA AGAAAACATT 541 ACATCGATAC TTTGGTTTGT CTATCTTTGG GGATAATTAT GAAAATGTCA ATTTATCTGT 601 ATTGCCTTT Predicted gene structure (within gDNA segment 95947 to 90119): Exon 1 95212 94962 ( 251 n); cDNA 1 254 ( 254 n); score: 0.886 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 2 92928 92578 ( 351 n); cDNA 255 609 ( 355 n); score: 0.776 MATCH C09HBa0278J12.1- SGN-E353870+ 0.822 602 0.989 C PGS_C09HBa0278J12.1-_SGN-E353870+ (95212 94962,92928 92578) Alignment (genomic DNA sequence = upper lines): AGAGAAATCA AGAGCGTAAA GATGAGCCGA GCAGCA---G CAGCAGTGAA GGGCGGGAAG 95156 ||| | | |||| ||||| |||||||||| |||||| | |||||||||| |||||||||| AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG CAGCAGTGAA GGGCGGGAAG 60 AAGAAGGGGG CAAGCTTCGT CATCGACTGT TCGAAGCCAG TGGAGGACAG TATTATGGAG 95096 |||||||||| |||||||||| ||| |||||| |||||||| | | || ||||| ||| |||||| AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG TAGAAGACAG TATCATGGAG 120 ATTGCTTCTC TTGACAAGTT CCTCCAAGAG AGAATTAAGG TTGGTGGAAA AGCTGGTGCA 95036 |||||||||| |||||||||| ||| |||||| || ||||||| |||||||||| ||||||||| ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG TTGGTGGAAA AGCTGGTGCT 180 CTTGGAGATT CCGTTACTGT CACTCGTGAT AAGAATAAAA TCACCGTCAC TTGCAACTCC 94976 ||||| |||| |||||||||| |||||||| ||||| || | |||||||||| |||||||| CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA TCACCGTCAC CTGCAACTCA 240 ACTTTTTCCA AGAGGTACTG ACTAGTACTA TATTTCCACT CCTCATTTCG TGTAATTTGG 94916 |||||||||| |||| ACTTTTTCCA AGAG...... .......... .......... .......... .......... 254 GTTTTTGCCT GATTTTTAAT TGGGTTTATT TGAAAAAATT GATCGTTGAA ACTTCGTGTG 94856 .......... .......... .......... .......... .......... .......... 254 GGTCGACTTT CATTGTAGTT TGATAATGTT TACACTGACA GATTGATAGG ATTTTAGCGT 94796 .......... .......... .......... .......... .......... .......... 254 AAACCTATTC TTTTATTCGG GATGTGCTAT GCTCTGCAAG GAGTTGTTTT GTTTGGAATA 94736 .......... .......... .......... .......... .......... .......... 254 GTGTAGTCAT TCACGCATTG AGCTTTGAGT CAGTTGATAA TGGGTTAAAA TAGAGTTCTT 94676 .......... .......... .......... .......... .......... .......... 254 TTTGCAGTTT ATTTTAGTTA TCAATAGTGA TGATGATTGT GTGTTTGTGT TATGTCATTC 94616 .......... .......... .......... .......... .......... .......... 254 TACTGCTTGT TTATTCAAAA TATTATCCTA TTTACATTGA GAAATAAGGA GAAATAGAAG 94556 .......... .......... .......... .......... .......... .......... 254 AACTAAAACA GCAGCGTAAT ATCTTGTAGG TAACCATTTG TATCTTGAAC TAGGTATCCT 94496 .......... .......... .......... .......... .......... .......... 254 AATTATCCTT GTAGCTCTTG CTGAACTTAT GGAACAGATA GTCTATGAGC TCTACACTTC 94436 .......... .......... .......... .......... .......... .......... 254 AACGTCCAAG ATTAGAAATC GGGGTTGGCT TTTATCGTAC TTGGATTATT TTCACAACTG 94376 .......... .......... .......... .......... .......... .......... 254 ACAGATTGAA ATTAACTTAT CATAGCCTCT TTTATTGTGG CTTGTTTCTG CTTTACCAAG 94316 .......... .......... .......... .......... .......... .......... 254 AGCTCTTATT TGGAATAGTG CATTCATTTA TATTTTAAGC TCAGAGTAGA TTAACAGTGG 94256 .......... .......... .......... .......... .......... .......... 254 TTTTCAAAAG AGGTCCTTTT TGCTGTTTAT TTTAGTTTGA GTGCCCTGCA CTGCAAGTCT 94196 .......... .......... .......... .......... .......... .......... 254 AATAAATAAG CCCTTCTATT CTGGAGTTAT TACATTGAAG AGGATGAGCT TATGTCATTC 94136 .......... .......... .......... .......... .......... .......... 254 TACTTTTCGT TCATCTAATG CATTATCTTA CTTACATTGA GAAGCAAAGA AATAACAGAA 94076 .......... .......... .......... .......... .......... .......... 254 AAATTATGGT GGCGTAGTAT CTTGTAGTTA TTCGTAAATC CAACTGTTTA TCTTGTAATT 94016 .......... .......... .......... .......... .......... .......... 254 ATCCGTAAAT CCAACTGTTG GTCTTCTCAT ATAGCAGGTT CAACCAGGCC CCAGTAACCA 93956 .......... .......... .......... .......... .......... .......... 254 CTGTTACATT TTTGGACTGT TGTCTGCTCT TTAGTTATTT AGTAAATTTT TATAAATTAG 93896 .......... .......... .......... .......... .......... .......... 254 CAGACCCCTT CTTTTGCTTG CATCTTCTTG ATGCCTTCTA ATGAAATCTC TTTCATCTAA 93836 .......... .......... .......... .......... .......... .......... 254 AAAAGATATT CATAACTTGA ATAGGGTATG TGCATAATGT TATATAATTA TAATAATCCT 93776 .......... .......... .......... .......... .......... .......... 254 CACAGATCTT CCTGAATTTA TGTTCAGATT GTCAGTGAGC ATTAGCTAGA TTGTTTGGCT 93716 .......... .......... .......... .......... .......... .......... 254 CCTCCCACTT CTCAGTGAAG TAGATTCTTA AGTAGGCGGT TGTTGATGAG ACCAATTAGA 93656 .......... .......... .......... .......... .......... .......... 254 CTGCAACCTA GCCTTTCACT TGTGTCCATT AGTTTGCGTC AAGTGCAATT TTGTTGATTT 93596 .......... .......... .......... .......... .......... .......... 254 CATCTTTTAC ATCCATAATC ACACAGAATA GTACACTTGG ATTATGTCAA ATTACATGTG 93536 .......... .......... .......... .......... .......... .......... 254 AAATAGGCTT GGAAGAACTA ATATGTATTA AGTTTGTAAC TTGAAAGAGA TAGGTAACTA 93476 .......... .......... .......... .......... .......... .......... 254 ACATGTAAGC AGGCTTAGTT ATAGGTAATT GATAATATTG ATCATTATAG ATGCTCTTGC 93416 .......... .......... .......... .......... .......... .......... 254 TAACTGAAAC ATCCTTCAGG GCGTGTAAAG CATATTTTCA TGTATTTTTT GTTGGGTTCT 93356 .......... .......... .......... .......... .......... .......... 254 GAAGAAAGTC TTCATTTTTT ATGTAAGTTT GATGCAGCTG AGTAGAATCT ATAGTGGTAT 93296 .......... .......... .......... .......... .......... .......... 254 TCTTGTTTCA TCTGATGTAT GTTTCTAAGC TTGTTCTGGA AGTGACATCA ACCACTTATT 93236 .......... .......... .......... .......... .......... .......... 254 AGCATCACCA TTTACCTAGC ACATTTTTGG TTCAAGTGAT AGTCCAAAGG CTACTTGTAA 93176 .......... .......... .......... .......... .......... .......... 254 AAGAAACTGA TACTCTAAAG AGAACCAAAT GTCCAACATA TTTATCATAT TACTTTTTTT 93116 .......... .......... .......... .......... .......... .......... 254 TTTTTGCAAT TTCTGTATGC GCGATTAATG AAAAAAGCTA TTGTGATGTT GCATTACTAC 93056 .......... .......... .......... .......... .......... .......... 254 TGCTATATAT TTTATTAATC CTCTTCCCCC ACTAAAACCA AAAGAAAGAC TGTTAGAAGT 92996 .......... .......... .......... .......... .......... .......... 254 AGTGAATTCA GGCAATTCAA GACTAGTAAA CAATGCTCTA CTTACAATTT TTTCTTCTAC 92936 .......... .......... .......... .......... .......... .......... 254 TTTTCAGGTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAACAAC GTTAGGGATT 92876 ||| |||||||||| |||||||||| |||||||||| |||||| ||| || ||||||| .......GTA CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAATAAC GTCAGGGATT 307 GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA TGAGTTGCGC TACTTCAACA 92816 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||||||||| GGCTTAGGGT GATTGCTTCC AACAAGGACA GGAATGTTTA CGAATTGCGC TACTTCAACA 367 TTGCCGAGAA TGAAGCAGAT GAAGAAGATT AAACATGTCT AGTCAATGTC CCT-TTTATC 92757 |||| ||||| |||||||||| |||||||||| ||||||| | | |||||||| || |||||| TTGCTGAGAA TGAAGCAGAT GAAGAAGATT AAACATGACC ATTCAATGTC TCTCTTTATC 427 TTC-TTATTT --TGAACCTT -A---TATCA T-C-TGTTTG AGTTATTAAT GAGCCGTATC 92706 ||| || ||| | |||| | | | | | | ||| | | | | |||| || | | || TTCTTTCTTT AGTCGGCCTT CACTTTTTGA TCCTTGTATC A-TCACTAAT GAATCCTGTC 486 TTCTCATTTC CAGATTATTG ATTTT-TTGT CCCCTTATCA GTAAAAGAAA ACGTTACTTT 92647 |||||||||| ||||| ||| |||| || ||||||| |||||||||| || |||| | TTCTCATTTC TAGATT-TTG TTTTTGCAGT TTGCTTATCA GTAAAAGAAA ACATTACATC 545 GATACACTTT GGTTTGTTCA TCTCTGGGGT CAAGTTTTTG CAAGGCATCA ATTTCTCTGT 92587 ||| ||||| ||||||| | ||| ||||| || || || || ||| |||| ||||| GAT--ACTTT GGTTTGTCTA TCTTTGGGGA TAA--TTATG -AAAATGTCA ATTTATCTGT 600 ATTGCCTTT 92578 ||||||||| ATTGCCTTT 609 hqPGS_C09HBa0278J12.1-_SGN-E353870+ (95212 94962,92928 92578) ******************************************************************************** EST sequence 393 +strand 604 n (File: SGN-E272167+) 1 CGTCGAATTT CTCCCTATTT GAATAGCAGC AGAAGAGAAA TCAAGAGCGT AAAGATGAGC 61 CGAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATCGACTGT 121 TCGAAGCCAG TGGAGGACAG TATTATGGAG ATTGCTTCTC TTGACAAGTT CCTCCAAGAG 181 AGAATTAAGG TTGGTGGAAA AGCTGGTGCA CTTGGAGATT CCGTTACTGT CACTCGTGAT 241 AAGAATAAAA TCACCGTCAC TTGCAACTCC ACTTTTTCCA AGAGGTACCT CAAATACCTT 301 GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT TGCTTCCAAC 361 AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA AGCAGATGAA 421 GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC CTTATATCAT 481 CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATT NTTTGTCCCC 541 TTATCAGTAA AAGAAAACGT TACTTTGATA CACTTTGGTT TGTTCATCTC TGGGGTCAAG 601 TTTT Predicted gene structure (within gDNA segment 95980 to 91999): Exon 1 95325 95311 ( 15 n); cDNA 1 15 ( 15 n); score: 1.000 Intron 1 95310 95231 ( 80 n); Pd: 0.876 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 95230 94962 ( 269 n); cDNA 16 284 ( 269 n); score: 1.000 Intron 2 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 92928 92609 ( 320 n); cDNA 285 604 ( 320 n); score: 0.997 MATCH C09HBa0278J12.1- SGN-E272167+ 0.998 604 1.000 C PGS_C09HBa0278J12.1-_SGN-E272167+ (95325 95311,95230 94962,92928 92609) Alignment (genomic DNA sequence = upper lines): CGTCGAATTT CTCCCGTATG TATTTTCCAA CTTTTTCTCC GGCGATGAAC ATGAGCTTTG 95266 |||||||||| ||||| CGTCGAATTT CTCCC..... .......... .......... .......... .......... 15 TGTTTGAGAT CTGACGATTT TTGTTTTGTT TTCAGTATTT GAATAGCAGC AGAAGAGAAA 95206 ||||| |||||||||| |||||||||| .......... .......... .......... .....TATTT GAATAGCAGC AGAAGAGAAA 40 TCAAGAGCGT AAAGATGAGC CGAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG 95146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAGCGT AAAGATGAGC CGAGCAGCAG CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG 100 CAAGCTTCGT CATCGACTGT TCGAAGCCAG TGGAGGACAG TATTATGGAG ATTGCTTCTC 95086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCTTCGT CATCGACTGT TCGAAGCCAG TGGAGGACAG TATTATGGAG ATTGCTTCTC 160 TTGACAAGTT CCTCCAAGAG AGAATTAAGG TTGGTGGAAA AGCTGGTGCA CTTGGAGATT 95026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAAGTT CCTCCAAGAG AGAATTAAGG TTGGTGGAAA AGCTGGTGCA CTTGGAGATT 220 CCGTTACTGT CACTCGTGAT AAGAATAAAA TCACCGTCAC TTGCAACTCC ACTTTTTCCA 94966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTACTGT CACTCGTGAT AAGAATAAAA TCACCGTCAC TTGCAACTCC ACTTTTTCCA 280 AGAGGTACTG ACTAGTACTA TATTTCCACT CCTCATTTCG TGTAATTTGG GTTTTTGCCT 94906 |||| AGAG...... .......... .......... .......... .......... .......... 284 GATTTTTAAT TGGGTTTATT TGAAAAAATT GATCGTTGAA ACTTCGTGTG GGTCGACTTT 94846 .......... .......... .......... .......... .......... .......... 284 CATTGTAGTT TGATAATGTT TACACTGACA GATTGATAGG ATTTTAGCGT AAACCTATTC 94786 .......... .......... .......... .......... .......... .......... 284 TTTTATTCGG GATGTGCTAT GCTCTGCAAG GAGTTGTTTT GTTTGGAATA GTGTAGTCAT 94726 .......... .......... .......... .......... .......... .......... 284 TCACGCATTG AGCTTTGAGT CAGTTGATAA TGGGTTAAAA TAGAGTTCTT TTTGCAGTTT 94666 .......... .......... .......... .......... .......... .......... 284 ATTTTAGTTA TCAATAGTGA TGATGATTGT GTGTTTGTGT TATGTCATTC TACTGCTTGT 94606 .......... .......... .......... .......... .......... .......... 284 TTATTCAAAA TATTATCCTA TTTACATTGA GAAATAAGGA GAAATAGAAG AACTAAAACA 94546 .......... .......... .......... .......... .......... .......... 284 GCAGCGTAAT ATCTTGTAGG TAACCATTTG TATCTTGAAC TAGGTATCCT AATTATCCTT 94486 .......... .......... .......... .......... .......... .......... 284 GTAGCTCTTG CTGAACTTAT GGAACAGATA GTCTATGAGC TCTACACTTC AACGTCCAAG 94426 .......... .......... .......... .......... .......... .......... 284 ATTAGAAATC GGGGTTGGCT TTTATCGTAC TTGGATTATT TTCACAACTG ACAGATTGAA 94366 .......... .......... .......... .......... .......... .......... 284 ATTAACTTAT CATAGCCTCT TTTATTGTGG CTTGTTTCTG CTTTACCAAG AGCTCTTATT 94306 .......... .......... .......... .......... .......... .......... 284 TGGAATAGTG CATTCATTTA TATTTTAAGC TCAGAGTAGA TTAACAGTGG TTTTCAAAAG 94246 .......... .......... .......... .......... .......... .......... 284 AGGTCCTTTT TGCTGTTTAT TTTAGTTTGA GTGCCCTGCA CTGCAAGTCT AATAAATAAG 94186 .......... .......... .......... .......... .......... .......... 284 CCCTTCTATT CTGGAGTTAT TACATTGAAG AGGATGAGCT TATGTCATTC TACTTTTCGT 94126 .......... .......... .......... .......... .......... .......... 284 TCATCTAATG CATTATCTTA CTTACATTGA GAAGCAAAGA AATAACAGAA AAATTATGGT 94066 .......... .......... .......... .......... .......... .......... 284 GGCGTAGTAT CTTGTAGTTA TTCGTAAATC CAACTGTTTA TCTTGTAATT ATCCGTAAAT 94006 .......... .......... .......... .......... .......... .......... 284 CCAACTGTTG GTCTTCTCAT ATAGCAGGTT CAACCAGGCC CCAGTAACCA CTGTTACATT 93946 .......... .......... .......... .......... .......... .......... 284 TTTGGACTGT TGTCTGCTCT TTAGTTATTT AGTAAATTTT TATAAATTAG CAGACCCCTT 93886 .......... .......... .......... .......... .......... .......... 284 CTTTTGCTTG CATCTTCTTG ATGCCTTCTA ATGAAATCTC TTTCATCTAA AAAAGATATT 93826 .......... .......... .......... .......... .......... .......... 284 CATAACTTGA ATAGGGTATG TGCATAATGT TATATAATTA TAATAATCCT CACAGATCTT 93766 .......... .......... .......... .......... .......... .......... 284 CCTGAATTTA TGTTCAGATT GTCAGTGAGC ATTAGCTAGA TTGTTTGGCT CCTCCCACTT 93706 .......... .......... .......... .......... .......... .......... 284 CTCAGTGAAG TAGATTCTTA AGTAGGCGGT TGTTGATGAG ACCAATTAGA CTGCAACCTA 93646 .......... .......... .......... .......... .......... .......... 284 GCCTTTCACT TGTGTCCATT AGTTTGCGTC AAGTGCAATT TTGTTGATTT CATCTTTTAC 93586 .......... .......... .......... .......... .......... .......... 284 ATCCATAATC ACACAGAATA GTACACTTGG ATTATGTCAA ATTACATGTG AAATAGGCTT 93526 .......... .......... .......... .......... .......... .......... 284 GGAAGAACTA ATATGTATTA AGTTTGTAAC TTGAAAGAGA TAGGTAACTA ACATGTAAGC 93466 .......... .......... .......... .......... .......... .......... 284 AGGCTTAGTT ATAGGTAATT GATAATATTG ATCATTATAG ATGCTCTTGC TAACTGAAAC 93406 .......... .......... .......... .......... .......... .......... 284 ATCCTTCAGG GCGTGTAAAG CATATTTTCA TGTATTTTTT GTTGGGTTCT GAAGAAAGTC 93346 .......... .......... .......... .......... .......... .......... 284 TTCATTTTTT ATGTAAGTTT GATGCAGCTG AGTAGAATCT ATAGTGGTAT TCTTGTTTCA 93286 .......... .......... .......... .......... .......... .......... 284 TCTGATGTAT GTTTCTAAGC TTGTTCTGGA AGTGACATCA ACCACTTATT AGCATCACCA 93226 .......... .......... .......... .......... .......... .......... 284 TTTACCTAGC ACATTTTTGG TTCAAGTGAT AGTCCAAAGG CTACTTGTAA AAGAAACTGA 93166 .......... .......... .......... .......... .......... .......... 284 TACTCTAAAG AGAACCAAAT GTCCAACATA TTTATCATAT TACTTTTTTT TTTTTGCAAT 93106 .......... .......... .......... .......... .......... .......... 284 TTCTGTATGC GCGATTAATG AAAAAAGCTA TTGTGATGTT GCATTACTAC TGCTATATAT 93046 .......... .......... .......... .......... .......... .......... 284 TTTATTAATC CTCTTCCCCC ACTAAAACCA AAAGAAAGAC TGTTAGAAGT AGTGAATTCA 92986 .......... .......... .......... .......... .......... .......... 284 GGCAATTCAA GACTAGTAAA CAATGCTCTA CTTACAATTT TTTCTTCTAC TTTTCAGGTA 92926 ||| .......... .......... .......... .......... .......... .......GTA 287 CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAACAAC GTTAGGGATT GGCTTAGGGT 92866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCAAATAC CTTGTCAAAA AGTACTTGAA GAAAAACAAC GTTAGGGATT GGCTTAGGGT 347 GATTGCTTCC AACAAGGACA GGAATGTTTA TGAGTTGCGC TACTTCAACA TTGCCGAGAA 92806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGCTTCC AACAAGGACA GGAATGTTTA TGAGTTGCGC TACTTCAACA TTGCCGAGAA 407 TGAAGCAGAT GAAGAAGATT AAACATGTCT AGTCAATGTC CCTTTTATCT TCTTATTTTG 92746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAGAT GAAGAAGATT AAACATGTCT AGTCAATGTC CCTTTTATCT TCTTATTTTG 467 AACCTTATAT CATCTGTTTG AGTTATTAAT GAGCCGTATC TTCTCATTTC CAGATTATTG 92686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTTATAT CATCTGTTTG AGTTATTAAT GAGCCGTATC TTCTCATTTC CAGATTATTG 527 ATTTTTTGTC CCCTTATCAG TAAAAGAAAA CGTTACTTTG ATACACTTTG GTTTGTTCAT 92626 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTNTTTGTC CCCTTATCAG TAAAAGAAAA CGTTACTTTG ATACACTTTG GTTTGTTCAT 587 CTCTGGGGTC AAGTTTT 92609 |||||||||| ||||||| CTCTGGGGTC AAGTTTT 604 hqPGS_C09HBa0278J12.1-_SGN-E272167+ (95325 95311,95230 94962,92928 92609) ******************************************************************************** EST sequence 129 -strand 388 n (File: SGN-E219375-) 1 CCGTTACTGT CACTCGTGAT AAGAATAAAA TCAACCGTCA CTTGCAACTC CACTTTTTCC 61 AAGAGGTACC TCAAATACCT TGTCAAAAAG TACTTGAAGA AAAACAACGT TAGGGATTGG 121 CTTAGGGTGA TTGCTTCCAA CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT 181 GCCGAGAATG AAGCAGATGA AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC 241 TTATTTTGAA CCTTATATCA TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA 301 GATTATTGAT TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACTTTGAT ACACTTTGGT 361 TTGTTAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 95635 to 91799): Exon 1 95025 94962 ( 64 n); cDNA 1 65 ( 65 n); score: 0.961 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 0.95), Pa: 0.998 (s: 1.00) Exon 2 92928 92632 ( 297 n); cDNA 66 362 ( 297 n); score: 1.000 PPA cDNA 366 388 MATCH C09HBa0278J12.1- SGN-E219375- 0.993 361 0.930 C PGS_C09HBa0278J12.1-_SGN-E219375- (95025 94962,92928 92632) Alignment (genomic DNA sequence = upper lines): CCGTTACTGT CACTCGTGAT AAGAATAAAA TC-ACCGTCA CTTGCAACTC CACTTTTTCC 94967 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CCGTTACTGT CACTCGTGAT AAGAATAAAA TCAACCGTCA CTTGCAACTC CACTTTTTCC 60 AAGAGGTACT GACTAGTACT ATATTTCCAC TCCTCATTTC GTGTAATTTG GGTTTTTGCC 94907 ||||| AAGAG..... .......... .......... .......... .......... .......... 65 TGATTTTTAA TTGGGTTTAT TTGAAAAAAT TGATCGTTGA AACTTCGTGT GGGTCGACTT 94847 .......... .......... .......... .......... .......... .......... 65 TCATTGTAGT TTGATAATGT TTACACTGAC AGATTGATAG GATTTTAGCG TAAACCTATT 94787 .......... .......... .......... .......... .......... .......... 65 CTTTTATTCG GGATGTGCTA TGCTCTGCAA GGAGTTGTTT TGTTTGGAAT AGTGTAGTCA 94727 .......... .......... .......... .......... .......... .......... 65 TTCACGCATT GAGCTTTGAG TCAGTTGATA ATGGGTTAAA ATAGAGTTCT TTTTGCAGTT 94667 .......... .......... .......... .......... .......... .......... 65 TATTTTAGTT ATCAATAGTG ATGATGATTG TGTGTTTGTG TTATGTCATT CTACTGCTTG 94607 .......... .......... .......... .......... .......... .......... 65 TTTATTCAAA ATATTATCCT ATTTACATTG AGAAATAAGG AGAAATAGAA GAACTAAAAC 94547 .......... .......... .......... .......... .......... .......... 65 AGCAGCGTAA TATCTTGTAG GTAACCATTT GTATCTTGAA CTAGGTATCC TAATTATCCT 94487 .......... .......... .......... .......... .......... .......... 65 TGTAGCTCTT GCTGAACTTA TGGAACAGAT AGTCTATGAG CTCTACACTT CAACGTCCAA 94427 .......... .......... .......... .......... .......... .......... 65 GATTAGAAAT CGGGGTTGGC TTTTATCGTA CTTGGATTAT TTTCACAACT GACAGATTGA 94367 .......... .......... .......... .......... .......... .......... 65 AATTAACTTA TCATAGCCTC TTTTATTGTG GCTTGTTTCT GCTTTACCAA GAGCTCTTAT 94307 .......... .......... .......... .......... .......... .......... 65 TTGGAATAGT GCATTCATTT ATATTTTAAG CTCAGAGTAG ATTAACAGTG GTTTTCAAAA 94247 .......... .......... .......... .......... .......... .......... 65 GAGGTCCTTT TTGCTGTTTA TTTTAGTTTG AGTGCCCTGC ACTGCAAGTC TAATAAATAA 94187 .......... .......... .......... .......... .......... .......... 65 GCCCTTCTAT TCTGGAGTTA TTACATTGAA GAGGATGAGC TTATGTCATT CTACTTTTCG 94127 .......... .......... .......... .......... .......... .......... 65 TTCATCTAAT GCATTATCTT ACTTACATTG AGAAGCAAAG AAATAACAGA AAAATTATGG 94067 .......... .......... .......... .......... .......... .......... 65 TGGCGTAGTA TCTTGTAGTT ATTCGTAAAT CCAACTGTTT ATCTTGTAAT TATCCGTAAA 94007 .......... .......... .......... .......... .......... .......... 65 TCCAACTGTT GGTCTTCTCA TATAGCAGGT TCAACCAGGC CCCAGTAACC ACTGTTACAT 93947 .......... .......... .......... .......... .......... .......... 65 TTTTGGACTG TTGTCTGCTC TTTAGTTATT TAGTAAATTT TTATAAATTA GCAGACCCCT 93887 .......... .......... .......... .......... .......... .......... 65 TCTTTTGCTT GCATCTTCTT GATGCCTTCT AATGAAATCT CTTTCATCTA AAAAAGATAT 93827 .......... .......... .......... .......... .......... .......... 65 TCATAACTTG AATAGGGTAT GTGCATAATG TTATATAATT ATAATAATCC TCACAGATCT 93767 .......... .......... .......... .......... .......... .......... 65 TCCTGAATTT ATGTTCAGAT TGTCAGTGAG CATTAGCTAG ATTGTTTGGC TCCTCCCACT 93707 .......... .......... .......... .......... .......... .......... 65 TCTCAGTGAA GTAGATTCTT AAGTAGGCGG TTGTTGATGA GACCAATTAG ACTGCAACCT 93647 .......... .......... .......... .......... .......... .......... 65 AGCCTTTCAC TTGTGTCCAT TAGTTTGCGT CAAGTGCAAT TTTGTTGATT TCATCTTTTA 93587 .......... .......... .......... .......... .......... .......... 65 CATCCATAAT CACACAGAAT AGTACACTTG GATTATGTCA AATTACATGT GAAATAGGCT 93527 .......... .......... .......... .......... .......... .......... 65 TGGAAGAACT AATATGTATT AAGTTTGTAA CTTGAAAGAG ATAGGTAACT AACATGTAAG 93467 .......... .......... .......... .......... .......... .......... 65 CAGGCTTAGT TATAGGTAAT TGATAATATT GATCATTATA GATGCTCTTG CTAACTGAAA 93407 .......... .......... .......... .......... .......... .......... 65 CATCCTTCAG GGCGTGTAAA GCATATTTTC ATGTATTTTT TGTTGGGTTC TGAAGAAAGT 93347 .......... .......... .......... .......... .......... .......... 65 CTTCATTTTT TATGTAAGTT TGATGCAGCT GAGTAGAATC TATAGTGGTA TTCTTGTTTC 93287 .......... .......... .......... .......... .......... .......... 65 ATCTGATGTA TGTTTCTAAG CTTGTTCTGG AAGTGACATC AACCACTTAT TAGCATCACC 93227 .......... .......... .......... .......... .......... .......... 65 ATTTACCTAG CACATTTTTG GTTCAAGTGA TAGTCCAAAG GCTACTTGTA AAAGAAACTG 93167 .......... .......... .......... .......... .......... .......... 65 ATACTCTAAA GAGAACCAAA TGTCCAACAT ATTTATCATA TTACTTTTTT TTTTTTGCAA 93107 .......... .......... .......... .......... .......... .......... 65 TTTCTGTATG CGCGATTAAT GAAAAAAGCT ATTGTGATGT TGCATTACTA CTGCTATATA 93047 .......... .......... .......... .......... .......... .......... 65 TTTTATTAAT CCTCTTCCCC CACTAAAACC AAAAGAAAGA CTGTTAGAAG TAGTGAATTC 92987 .......... .......... .......... .......... .......... .......... 65 AGGCAATTCA AGACTAGTAA ACAATGCTCT ACTTACAATT TTTTCTTCTA CTTTTCAGGT 92927 || .......... .......... .......... .......... .......... ........GT 67 ACCTCAAATA CCTTGTCAAA AAGTACTTGA AGAAAAACAA CGTTAGGGAT TGGCTTAGGG 92867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCAAATA CCTTGTCAAA AAGTACTTGA AGAAAAACAA CGTTAGGGAT TGGCTTAGGG 127 TGATTGCTTC CAACAAGGAC AGGAATGTTT ATGAGTTGCG CTACTTCAAC ATTGCCGAGA 92807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGCTTC CAACAAGGAC AGGAATGTTT ATGAGTTGCG CTACTTCAAC ATTGCCGAGA 187 ATGAAGCAGA TGAAGAAGAT TAAACATGTC TAGTCAATGT CCCTTTTATC TTCTTATTTT 92747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCAGA TGAAGAAGAT TAAACATGTC TAGTCAATGT CCCTTTTATC TTCTTATTTT 247 GAACCTTATA TCATCTGTTT GAGTTATTAA TGAGCCGTAT CTTCTCATTT CCAGATTATT 92687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCTTATA TCATCTGTTT GAGTTATTAA TGAGCCGTAT CTTCTCATTT CCAGATTATT 307 GATTTTTTGT CCCCTTATCA GTAAAAGAAA ACGTTACTTT GATACACTTT GGTTT 92632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATTTTTTGT CCCCTTATCA GTAAAAGAAA ACGTTACTTT GATACACTTT GGTTT 362 hqPGS_C09HBa0278J12.1-_SGN-E219375- (95025 94962,92928 92632) ******************************************************************************** EST sequence 108 -strand 494 n (File: SGN-E284720-) 1 AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGA AGGACAGTAT TATGGAGATT 61 GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAGGGTTG GTGAAAAAGC TGGTGCACTT 121 GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT 181 TTTTCCAAGA GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA CAACGTTAGG 241 GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG TTTATGAGTT GCGCTACTTC 301 AACATTGCCG AGAATGAAGC AGATGAAGAA GATTAAACAT GTCTAGTCAA TGTCCCTTTT 361 ATCTTCTTAT TTTGAACCTT ATATCATCTG TTTGAGTTAT TAATGAGCCG TATCTTCTCA 421 TTTCCAGATT ATTGATTTTT TGTCCCCTTA TCAGTAAAAG AAACCGTTAC TTTGATAAAA 481 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 95762 to 91747): Exon 1 95152 94962 ( 191 n); cDNA 1 191 ( 191 n); score: 0.984 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92636 ( 293 n); cDNA 192 484 ( 293 n); score: 0.976 Intron 2 92635 91933 ( 703 n); Pd: 0.000 (s: 0.86), Pa: 0.977 (s: 0) Exon 3 91932 91923 ( 10 n); cDNA 485 494 ( 10 n); score: 0.700 MATCH C09HBa0278J12.1- SGN-E284720- 0.979 494 1.000 C PGS_C09HBa0278J12.1-_SGN-E284720- (95152 94962,92928 92636,91932 91923) Alignment (genomic DNA sequence = upper lines): AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGG AGGACAGTAT TATGGAGATT 95093 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGA AGGACAGTAT TATGGAGATT 60 GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAAGGTTG GTGGAAAAGC TGGTGCACTT 95033 |||||||||| |||||||||| |||||||||| |||| ||||| ||| |||||| |||||||||| GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAGGGTTG GTGAAAAAGC TGGTGCACTT 120 GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT 94973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA CCGTCACTTG CAACTCCACT 180 TTTTCCAAGA GGTACTGACT AGTACTATAT TTCCACTCCT CATTTCGTGT AATTTGGGTT 94913 |||||||||| | TTTTCCAAGA G......... .......... .......... .......... .......... 191 TTTGCCTGAT TTTTAATTGG GTTTATTTGA AAAAATTGAT CGTTGAAACT TCGTGTGGGT 94853 .......... .......... .......... .......... .......... .......... 191 CGACTTTCAT TGTAGTTTGA TAATGTTTAC ACTGACAGAT TGATAGGATT TTAGCGTAAA 94793 .......... .......... .......... .......... .......... .......... 191 CCTATTCTTT TATTCGGGAT GTGCTATGCT CTGCAAGGAG TTGTTTTGTT TGGAATAGTG 94733 .......... .......... .......... .......... .......... .......... 191 TAGTCATTCA CGCATTGAGC TTTGAGTCAG TTGATAATGG GTTAAAATAG AGTTCTTTTT 94673 .......... .......... .......... .......... .......... .......... 191 GCAGTTTATT TTAGTTATCA ATAGTGATGA TGATTGTGTG TTTGTGTTAT GTCATTCTAC 94613 .......... .......... .......... .......... .......... .......... 191 TGCTTGTTTA TTCAAAATAT TATCCTATTT ACATTGAGAA ATAAGGAGAA ATAGAAGAAC 94553 .......... .......... .......... .......... .......... .......... 191 TAAAACAGCA GCGTAATATC TTGTAGGTAA CCATTTGTAT CTTGAACTAG GTATCCTAAT 94493 .......... .......... .......... .......... .......... .......... 191 TATCCTTGTA GCTCTTGCTG AACTTATGGA ACAGATAGTC TATGAGCTCT ACACTTCAAC 94433 .......... .......... .......... .......... .......... .......... 191 GTCCAAGATT AGAAATCGGG GTTGGCTTTT ATCGTACTTG GATTATTTTC ACAACTGACA 94373 .......... .......... .......... .......... .......... .......... 191 GATTGAAATT AACTTATCAT AGCCTCTTTT ATTGTGGCTT GTTTCTGCTT TACCAAGAGC 94313 .......... .......... .......... .......... .......... .......... 191 TCTTATTTGG AATAGTGCAT TCATTTATAT TTTAAGCTCA GAGTAGATTA ACAGTGGTTT 94253 .......... .......... .......... .......... .......... .......... 191 TCAAAAGAGG TCCTTTTTGC TGTTTATTTT AGTTTGAGTG CCCTGCACTG CAAGTCTAAT 94193 .......... .......... .......... .......... .......... .......... 191 AAATAAGCCC TTCTATTCTG GAGTTATTAC ATTGAAGAGG ATGAGCTTAT GTCATTCTAC 94133 .......... .......... .......... .......... .......... .......... 191 TTTTCGTTCA TCTAATGCAT TATCTTACTT ACATTGAGAA GCAAAGAAAT AACAGAAAAA 94073 .......... .......... .......... .......... .......... .......... 191 TTATGGTGGC GTAGTATCTT GTAGTTATTC GTAAATCCAA CTGTTTATCT TGTAATTATC 94013 .......... .......... .......... .......... .......... .......... 191 CGTAAATCCA ACTGTTGGTC TTCTCATATA GCAGGTTCAA CCAGGCCCCA GTAACCACTG 93953 .......... .......... .......... .......... .......... .......... 191 TTACATTTTT GGACTGTTGT CTGCTCTTTA GTTATTTAGT AAATTTTTAT AAATTAGCAG 93893 .......... .......... .......... .......... .......... .......... 191 ACCCCTTCTT TTGCTTGCAT CTTCTTGATG CCTTCTAATG AAATCTCTTT CATCTAAAAA 93833 .......... .......... .......... .......... .......... .......... 191 AGATATTCAT AACTTGAATA GGGTATGTGC ATAATGTTAT ATAATTATAA TAATCCTCAC 93773 .......... .......... .......... .......... .......... .......... 191 AGATCTTCCT GAATTTATGT TCAGATTGTC AGTGAGCATT AGCTAGATTG TTTGGCTCCT 93713 .......... .......... .......... .......... .......... .......... 191 CCCACTTCTC AGTGAAGTAG ATTCTTAAGT AGGCGGTTGT TGATGAGACC AATTAGACTG 93653 .......... .......... .......... .......... .......... .......... 191 CAACCTAGCC TTTCACTTGT GTCCATTAGT TTGCGTCAAG TGCAATTTTG TTGATTTCAT 93593 .......... .......... .......... .......... .......... .......... 191 CTTTTACATC CATAATCACA CAGAATAGTA CACTTGGATT ATGTCAAATT ACATGTGAAA 93533 .......... .......... .......... .......... .......... .......... 191 TAGGCTTGGA AGAACTAATA TGTATTAAGT TTGTAACTTG AAAGAGATAG GTAACTAACA 93473 .......... .......... .......... .......... .......... .......... 191 TGTAAGCAGG CTTAGTTATA GGTAATTGAT AATATTGATC ATTATAGATG CTCTTGCTAA 93413 .......... .......... .......... .......... .......... .......... 191 CTGAAACATC CTTCAGGGCG TGTAAAGCAT ATTTTCATGT ATTTTTTGTT GGGTTCTGAA 93353 .......... .......... .......... .......... .......... .......... 191 GAAAGTCTTC ATTTTTTATG TAAGTTTGAT GCAGCTGAGT AGAATCTATA GTGGTATTCT 93293 .......... .......... .......... .......... .......... .......... 191 TGTTTCATCT GATGTATGTT TCTAAGCTTG TTCTGGAAGT GACATCAACC ACTTATTAGC 93233 .......... .......... .......... .......... .......... .......... 191 ATCACCATTT ACCTAGCACA TTTTTGGTTC AAGTGATAGT CCAAAGGCTA CTTGTAAAAG 93173 .......... .......... .......... .......... .......... .......... 191 AAACTGATAC TCTAAAGAGA ACCAAATGTC CAACATATTT ATCATATTAC TTTTTTTTTT 93113 .......... .......... .......... .......... .......... .......... 191 TTGCAATTTC TGTATGCGCG ATTAATGAAA AAAGCTATTG TGATGTTGCA TTACTACTGC 93053 .......... .......... .......... .......... .......... .......... 191 TATATATTTT ATTAATCCTC TTCCCCCACT AAAACCAAAA GAAAGACTGT TAGAAGTAGT 92993 .......... .......... .......... .......... .......... .......... 191 GAATTCAGGC AATTCAAGAC TAGTAAACAA TGCTCTACTT ACAATTTTTT CTTCTACTTT 92933 .......... .......... .......... .......... .......... .......... 191 TCAGGTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC 92873 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTACCT CAAATACCTT GTCAAAAAGT ACTTGAAGAA AAACAACGTT AGGGATTGGC 247 TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG 92813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGGTGAT TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG 307 CCGAGAATGA AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT 92753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGAATGA AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT 367 TATTTTGAAC CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG 92693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTGAAC CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG 427 ATTATTGATT TTTTGTCCCC TTATCAGTAA AAGAAAACGT TACTTTGATA CACTTTGGTT 92633 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| | ATTATTGATT TTTTGTCCCC TTATCAGTAA AAGAAACCGT TACTTTGATA AAAAAAA... 484 TGTTCATCTC TGGGGTCAAG TTTTTGCAAG GCATCAATTT CTCTGTATTG CCTTTTCCCT 92573 .......... .......... .......... .......... .......... .......... 484 CTTGATGATC ACATGTAATT TATAGAGTTT ATCTTTTGTT GTTCTTGTGT CTTTCTTTTA 92513 .......... .......... .......... .......... .......... .......... 484 ACCACTGCGC CATTGATGAT TTCCTTCAAT CCTTGAAAAG ATCGATTGAG ACTACCTTCA 92453 .......... .......... .......... .......... .......... .......... 484 TTGTCCCTTT TAAGATATCT ACTTGTTAAG GGCCCAAATG AGATTTCAAT TTGGGTGCAT 92393 .......... .......... .......... .......... .......... .......... 484 GGAGCAAATG ATATTCTAAT TACCAGCCCC TCCCTCTTCT TGTTTTTCTA CCTTCATTTA 92333 .......... .......... .......... .......... .......... .......... 484 AGTTCTGATT AAATTTGAAA CAATACTGAA TAGTTTCACA TTGGGGTAAA GCTAGCGATG 92273 .......... .......... .......... .......... .......... .......... 484 TCTGAATTAC GTAAAACGTT TCTAACAAAA TTGGCTCTGC ATTTTCCAAC AAAGTCTACT 92213 .......... .......... .......... .......... .......... .......... 484 CTTTTCTGAA CGCAACTTAA ATTTAAACAT CTAGTTAAAA TGATCCTTGT TGATATGAAT 92153 .......... .......... .......... .......... .......... .......... 484 TGCTCTACTT TAACATTGCT TTCAACAATG ACTACGCATT TTAAGAGCAA AAGTCATGTG 92093 .......... .......... .......... .......... .......... .......... 484 AAACATATGT AACCGACTTA GAGCCTTATT AATGTTTCGT GTGATACTTG TTAACTTTGC 92033 .......... .......... .......... .......... .......... .......... 484 GAAATATAGT AGGATTACTT GATTAGATTT TATTATGATG CAAAAATATG AACTTATACC 91973 .......... .......... .......... .......... .......... .......... 484 TCGTATATAT ATTTTATTAT TTATTTTATT TTTTTGTTAG AAAGGAGAAA 91923 ||| | ||| .......... .......... .......... .......... AAAAAAAAAA 494 hqPGS_C09HBa0278J12.1-_SGN-E284720- (95152 94962,92928 92636) ******************************************************************************** EST sequence 185 +strand 574 n (File: SGN-E336142+) 1 TTTCTCCCTA TTTGAATAGC AGCAGAAGAG AAATCAAGAG CGTAAAGATG AGCCGAGCAG 61 CAGCAGCAGT GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT CGTCATCGAC TGTTCGAAGC 121 CAGTGGAGGA CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA GAGAGAATTA 181 AGGTTGGTGG AAAAGCTGGT GCACTTGGAG ATTCCGTTAC TGTCACTCGT GATAAGAATA 241 AAATCACCGT CACTTGCAAC TCCACTTTTT CCAAGAGGTA CCTCAAATAC CTTGTCAAAA 301 AGTACTTGAA GAAAAACAAC GTTAGGGATT GGCTTAGGGT GATTGCTTCC AACAAGGACA 361 GGAATGTTTA TGAGTTGCGC TACTTCAACA TTGCCGAGAA TGAAGCAGAT GAAGAAGATT 421 AAACATGTCT AGTCAATGTC CCTTTTATCT TCTTATTTTG AACCTTATAT CATCTGTTTG 481 AGTTATTAAT GAGCCGTATC TTCTCATTTC CAGATTATTG ATTTTTTGTC CCCTTATCAG 541 TAAAAGAAAA CGTTACTTTG ATACAAAAAA AAAA Predicted gene structure (within gDNA segment 95910 to 91941): Exon 1 95318 95311 ( 8 n); cDNA 1 8 ( 8 n); score: 1.000 Intron 1 95310 95231 ( 80 n); Pd: 0.876 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 95230 94962 ( 269 n); cDNA 9 277 ( 269 n); score: 1.000 Intron 2 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 92928 92641 ( 288 n); cDNA 278 565 ( 288 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E336142+ 1.000 565 0.984 C PGS_C09HBa0278J12.1-_SGN-E336142+ (95318 95311,95230 94962,92928 92641) Alignment (genomic DNA sequence = upper lines): TTTCTCCCGT ATGTATTTTC CAACTTTTTC TCCGGCGATG AACATGAGCT TTGTGTTTGA 95259 |||||||| TTTCTCCC.. .......... .......... .......... .......... .......... 8 GATCTGACGA TTTTTGTTTT GTTTTCAGTA TTTGAATAGC AGCAGAAGAG AAATCAAGAG 95199 || |||||||||| |||||||||| |||||||||| .......... .......... ........TA TTTGAATAGC AGCAGAAGAG AAATCAAGAG 40 CGTAAAGATG AGCCGAGCAG CAGCAGCAGT GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT 95139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAAAGATG AGCCGAGCAG CAGCAGCAGT GAAGGGCGGG AAGAAGAAGG GGGCAAGCTT 100 CGTCATCGAC TGTTCGAAGC CAGTGGAGGA CAGTATTATG GAGATTGCTT CTCTTGACAA 95079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCATCGAC TGTTCGAAGC CAGTGGAGGA CAGTATTATG GAGATTGCTT CTCTTGACAA 160 GTTCCTCCAA GAGAGAATTA AGGTTGGTGG AAAAGCTGGT GCACTTGGAG ATTCCGTTAC 95019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTCCAA GAGAGAATTA AGGTTGGTGG AAAAGCTGGT GCACTTGGAG ATTCCGTTAC 220 TGTCACTCGT GATAAGAATA AAATCACCGT CACTTGCAAC TCCACTTTTT CCAAGAGGTA 94959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGTCACTCGT GATAAGAATA AAATCACCGT CACTTGCAAC TCCACTTTTT CCAAGAG... 277 CTGACTAGTA CTATATTTCC ACTCCTCATT TCGTGTAATT TGGGTTTTTG CCTGATTTTT 94899 .......... .......... .......... .......... .......... .......... 277 AATTGGGTTT ATTTGAAAAA ATTGATCGTT GAAACTTCGT GTGGGTCGAC TTTCATTGTA 94839 .......... .......... .......... .......... .......... .......... 277 GTTTGATAAT GTTTACACTG ACAGATTGAT AGGATTTTAG CGTAAACCTA TTCTTTTATT 94779 .......... .......... .......... .......... .......... .......... 277 CGGGATGTGC TATGCTCTGC AAGGAGTTGT TTTGTTTGGA ATAGTGTAGT CATTCACGCA 94719 .......... .......... .......... .......... .......... .......... 277 TTGAGCTTTG AGTCAGTTGA TAATGGGTTA AAATAGAGTT CTTTTTGCAG TTTATTTTAG 94659 .......... .......... .......... .......... .......... .......... 277 TTATCAATAG TGATGATGAT TGTGTGTTTG TGTTATGTCA TTCTACTGCT TGTTTATTCA 94599 .......... .......... .......... .......... .......... .......... 277 AAATATTATC CTATTTACAT TGAGAAATAA GGAGAAATAG AAGAACTAAA ACAGCAGCGT 94539 .......... .......... .......... .......... .......... .......... 277 AATATCTTGT AGGTAACCAT TTGTATCTTG AACTAGGTAT CCTAATTATC CTTGTAGCTC 94479 .......... .......... .......... .......... .......... .......... 277 TTGCTGAACT TATGGAACAG ATAGTCTATG AGCTCTACAC TTCAACGTCC AAGATTAGAA 94419 .......... .......... .......... .......... .......... .......... 277 ATCGGGGTTG GCTTTTATCG TACTTGGATT ATTTTCACAA CTGACAGATT GAAATTAACT 94359 .......... .......... .......... .......... .......... .......... 277 TATCATAGCC TCTTTTATTG TGGCTTGTTT CTGCTTTACC AAGAGCTCTT ATTTGGAATA 94299 .......... .......... .......... .......... .......... .......... 277 GTGCATTCAT TTATATTTTA AGCTCAGAGT AGATTAACAG TGGTTTTCAA AAGAGGTCCT 94239 .......... .......... .......... .......... .......... .......... 277 TTTTGCTGTT TATTTTAGTT TGAGTGCCCT GCACTGCAAG TCTAATAAAT AAGCCCTTCT 94179 .......... .......... .......... .......... .......... .......... 277 ATTCTGGAGT TATTACATTG AAGAGGATGA GCTTATGTCA TTCTACTTTT CGTTCATCTA 94119 .......... .......... .......... .......... .......... .......... 277 ATGCATTATC TTACTTACAT TGAGAAGCAA AGAAATAACA GAAAAATTAT GGTGGCGTAG 94059 .......... .......... .......... .......... .......... .......... 277 TATCTTGTAG TTATTCGTAA ATCCAACTGT TTATCTTGTA ATTATCCGTA AATCCAACTG 93999 .......... .......... .......... .......... .......... .......... 277 TTGGTCTTCT CATATAGCAG GTTCAACCAG GCCCCAGTAA CCACTGTTAC ATTTTTGGAC 93939 .......... .......... .......... .......... .......... .......... 277 TGTTGTCTGC TCTTTAGTTA TTTAGTAAAT TTTTATAAAT TAGCAGACCC CTTCTTTTGC 93879 .......... .......... .......... .......... .......... .......... 277 TTGCATCTTC TTGATGCCTT CTAATGAAAT CTCTTTCATC TAAAAAAGAT ATTCATAACT 93819 .......... .......... .......... .......... .......... .......... 277 TGAATAGGGT ATGTGCATAA TGTTATATAA TTATAATAAT CCTCACAGAT CTTCCTGAAT 93759 .......... .......... .......... .......... .......... .......... 277 TTATGTTCAG ATTGTCAGTG AGCATTAGCT AGATTGTTTG GCTCCTCCCA CTTCTCAGTG 93699 .......... .......... .......... .......... .......... .......... 277 AAGTAGATTC TTAAGTAGGC GGTTGTTGAT GAGACCAATT AGACTGCAAC CTAGCCTTTC 93639 .......... .......... .......... .......... .......... .......... 277 ACTTGTGTCC ATTAGTTTGC GTCAAGTGCA ATTTTGTTGA TTTCATCTTT TACATCCATA 93579 .......... .......... .......... .......... .......... .......... 277 ATCACACAGA ATAGTACACT TGGATTATGT CAAATTACAT GTGAAATAGG CTTGGAAGAA 93519 .......... .......... .......... .......... .......... .......... 277 CTAATATGTA TTAAGTTTGT AACTTGAAAG AGATAGGTAA CTAACATGTA AGCAGGCTTA 93459 .......... .......... .......... .......... .......... .......... 277 GTTATAGGTA ATTGATAATA TTGATCATTA TAGATGCTCT TGCTAACTGA AACATCCTTC 93399 .......... .......... .......... .......... .......... .......... 277 AGGGCGTGTA AAGCATATTT TCATGTATTT TTTGTTGGGT TCTGAAGAAA GTCTTCATTT 93339 .......... .......... .......... .......... .......... .......... 277 TTTATGTAAG TTTGATGCAG CTGAGTAGAA TCTATAGTGG TATTCTTGTT TCATCTGATG 93279 .......... .......... .......... .......... .......... .......... 277 TATGTTTCTA AGCTTGTTCT GGAAGTGACA TCAACCACTT ATTAGCATCA CCATTTACCT 93219 .......... .......... .......... .......... .......... .......... 277 AGCACATTTT TGGTTCAAGT GATAGTCCAA AGGCTACTTG TAAAAGAAAC TGATACTCTA 93159 .......... .......... .......... .......... .......... .......... 277 AAGAGAACCA AATGTCCAAC ATATTTATCA TATTACTTTT TTTTTTTTGC AATTTCTGTA 93099 .......... .......... .......... .......... .......... .......... 277 TGCGCGATTA ATGAAAAAAG CTATTGTGAT GTTGCATTAC TACTGCTATA TATTTTATTA 93039 .......... .......... .......... .......... .......... .......... 277 ATCCTCTTCC CCCACTAAAA CCAAAAGAAA GACTGTTAGA AGTAGTGAAT TCAGGCAATT 92979 .......... .......... .......... .......... .......... .......... 277 CAAGACTAGT AAACAATGCT CTACTTACAA TTTTTTCTTC TACTTTTCAG GTACCTCAAA 92919 |||||||||| .......... .......... .......... .......... .......... GTACCTCAAA 287 TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG GGTGATTGCT 92859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG GGTGATTGCT 347 TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA GAATGAAGCA 92799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA GAATGAAGCA 407 GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCTTTTA TCTTCTTATT TTGAACCTTA 92739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCTTTTA TCTTCTTATT TTGAACCTTA 467 TATCATCTGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT TTCCAGATTA TTGATTTTTT 92679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATCTGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT TTCCAGATTA TTGATTTTTT 527 GTCCCCTTAT CAGTAAAAGA AAACGTTACT TTGATACA 92641 |||||||||| |||||||||| |||||||||| |||||||| GTCCCCTTAT CAGTAAAAGA AAACGTTACT TTGATACA 565 hqPGS_C09HBa0278J12.1-_SGN-E336142+ (95318 95311,95230 94962,92928 92641) ******************************************************************************** EST sequence 299 +strand 529 n (File: SGN-E335016+) 1 GCCCGAGCAG CAGCAGCAGT GAAGGGCGGG AAGACAGAAG GGGGCAAGCT TCGTCATCGA 61 CTGTTCGAAG CCAGTGGAGG ACCAGTATTA TGGAGATTGC TTCTCTTGAC AAGTTCCTCC 121 AAGAGAGAAT TAAGGGTTGG TGGAAAAGCT GGTGCCACTT GGAGACTTCC GTTACTGTCA 181 CTCGTGATAA GAATAAAATC ACCGTCACTT GCAACTCCAC TTTTTCCAAG AGGTACCTCA 241 AATACCCTTG TCAAAAAGTA CCTTGAAGAA AAACAACGTT AGGGATTGGC TTAGGGTGAT 301 TGCTTCCAAC AAGGACAGGA ATGTTTATGA GTTGCGCTAC TTCAACATTG CCGAGAATGA 361 AGCAGATGAA GAAGATTAAA CATGTCTAGT CAATGTCCCT TTTATCTTCT TATTTTGAAC 421 CTTATATCAT CTGTTTGAGT TATTAATGAG CCGTATCTTC TCATTTCCAG ATTATTGATN 481 TTTTTGTCCC CTTATCAGTA AAAGAAAACG TTACCTTTGA AAAAAAAAA Predicted gene structure (within gDNA segment 95806 to 91890): Exon 1 95186 94962 ( 225 n); cDNA 3 232 ( 230 n); score: 0.944 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 0.90) Exon 2 92928 92645 ( 284 n); cDNA 233 520 ( 288 n); score: 0.965 MATCH C09HBa0278J12.1- SGN-E335016+ 0.956 509 0.962 C PGS_C09HBa0278J12.1-_SGN-E335016+ (95186 94962,92928 92645) Alignment (genomic DNA sequence = upper lines): CCGAGCAGCA GCAGCAGTGA AGGGCGGGAA GA-AGAAGGG GGCAAGCTTC GTCATCGACT 95128 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CCGAGCAGCA GCAGCAGTGA AGGGCGGGAA GACAGAAGGG GGCAAGCTTC GTCATCGACT 62 GTTCGAAGCC AGTGGAGGAC -AGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA 95069 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GTTCGAAGCC AGTGGAGGAC CAGTATTATG GAGATTGCTT CTCTTGACAA GTTCCTCCAA 122 GAGAGAATTA A-GGTTGGTG GAAAAGCTGG TG-CACTTGG AGA-TTCCGT TACTGTCACT 95012 |||||||||| | |||||||| |||||||||| || ||||||| ||| |||||| |||||||||| GAGAGAATTA AGGGTTGGTG GAAAAGCTGG TGCCACTTGG AGACTTCCGT TACTGTCACT 182 CGTGATAAGA ATAAAATCAC CGTCACTTGC AACTCCACTT TTTCCAAGAG GTACTGACTA 94952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGATAAGA ATAAAATCAC CGTCACTTGC AACTCCACTT TTTCCAAGAG .......... 232 GTACTATATT TCCACTCCTC ATTTCGTGTA ATTTGGGTTT TTGCCTGATT TTTAATTGGG 94892 .......... .......... .......... .......... .......... .......... 232 TTTATTTGAA AAAATTGATC GTTGAAACTT CGTGTGGGTC GACTTTCATT GTAGTTTGAT 94832 .......... .......... .......... .......... .......... .......... 232 AATGTTTACA CTGACAGATT GATAGGATTT TAGCGTAAAC CTATTCTTTT ATTCGGGATG 94772 .......... .......... .......... .......... .......... .......... 232 TGCTATGCTC TGCAAGGAGT TGTTTTGTTT GGAATAGTGT AGTCATTCAC GCATTGAGCT 94712 .......... .......... .......... .......... .......... .......... 232 TTGAGTCAGT TGATAATGGG TTAAAATAGA GTTCTTTTTG CAGTTTATTT TAGTTATCAA 94652 .......... .......... .......... .......... .......... .......... 232 TAGTGATGAT GATTGTGTGT TTGTGTTATG TCATTCTACT GCTTGTTTAT TCAAAATATT 94592 .......... .......... .......... .......... .......... .......... 232 ATCCTATTTA CATTGAGAAA TAAGGAGAAA TAGAAGAACT AAAACAGCAG CGTAATATCT 94532 .......... .......... .......... .......... .......... .......... 232 TGTAGGTAAC CATTTGTATC TTGAACTAGG TATCCTAATT ATCCTTGTAG CTCTTGCTGA 94472 .......... .......... .......... .......... .......... .......... 232 ACTTATGGAA CAGATAGTCT ATGAGCTCTA CACTTCAACG TCCAAGATTA GAAATCGGGG 94412 .......... .......... .......... .......... .......... .......... 232 TTGGCTTTTA TCGTACTTGG ATTATTTTCA CAACTGACAG ATTGAAATTA ACTTATCATA 94352 .......... .......... .......... .......... .......... .......... 232 GCCTCTTTTA TTGTGGCTTG TTTCTGCTTT ACCAAGAGCT CTTATTTGGA ATAGTGCATT 94292 .......... .......... .......... .......... .......... .......... 232 CATTTATATT TTAAGCTCAG AGTAGATTAA CAGTGGTTTT CAAAAGAGGT CCTTTTTGCT 94232 .......... .......... .......... .......... .......... .......... 232 GTTTATTTTA GTTTGAGTGC CCTGCACTGC AAGTCTAATA AATAAGCCCT TCTATTCTGG 94172 .......... .......... .......... .......... .......... .......... 232 AGTTATTACA TTGAAGAGGA TGAGCTTATG TCATTCTACT TTTCGTTCAT CTAATGCATT 94112 .......... .......... .......... .......... .......... .......... 232 ATCTTACTTA CATTGAGAAG CAAAGAAATA ACAGAAAAAT TATGGTGGCG TAGTATCTTG 94052 .......... .......... .......... .......... .......... .......... 232 TAGTTATTCG TAAATCCAAC TGTTTATCTT GTAATTATCC GTAAATCCAA CTGTTGGTCT 93992 .......... .......... .......... .......... .......... .......... 232 TCTCATATAG CAGGTTCAAC CAGGCCCCAG TAACCACTGT TACATTTTTG GACTGTTGTC 93932 .......... .......... .......... .......... .......... .......... 232 TGCTCTTTAG TTATTTAGTA AATTTTTATA AATTAGCAGA CCCCTTCTTT TGCTTGCATC 93872 .......... .......... .......... .......... .......... .......... 232 TTCTTGATGC CTTCTAATGA AATCTCTTTC ATCTAAAAAA GATATTCATA ACTTGAATAG 93812 .......... .......... .......... .......... .......... .......... 232 GGTATGTGCA TAATGTTATA TAATTATAAT AATCCTCACA GATCTTCCTG AATTTATGTT 93752 .......... .......... .......... .......... .......... .......... 232 CAGATTGTCA GTGAGCATTA GCTAGATTGT TTGGCTCCTC CCACTTCTCA GTGAAGTAGA 93692 .......... .......... .......... .......... .......... .......... 232 TTCTTAAGTA GGCGGTTGTT GATGAGACCA ATTAGACTGC AACCTAGCCT TTCACTTGTG 93632 .......... .......... .......... .......... .......... .......... 232 TCCATTAGTT TGCGTCAAGT GCAATTTTGT TGATTTCATC TTTTACATCC ATAATCACAC 93572 .......... .......... .......... .......... .......... .......... 232 AGAATAGTAC ACTTGGATTA TGTCAAATTA CATGTGAAAT AGGCTTGGAA GAACTAATAT 93512 .......... .......... .......... .......... .......... .......... 232 GTATTAAGTT TGTAACTTGA AAGAGATAGG TAACTAACAT GTAAGCAGGC TTAGTTATAG 93452 .......... .......... .......... .......... .......... .......... 232 GTAATTGATA ATATTGATCA TTATAGATGC TCTTGCTAAC TGAAACATCC TTCAGGGCGT 93392 .......... .......... .......... .......... .......... .......... 232 GTAAAGCATA TTTTCATGTA TTTTTTGTTG GGTTCTGAAG AAAGTCTTCA TTTTTTATGT 93332 .......... .......... .......... .......... .......... .......... 232 AAGTTTGATG CAGCTGAGTA GAATCTATAG TGGTATTCTT GTTTCATCTG ATGTATGTTT 93272 .......... .......... .......... .......... .......... .......... 232 CTAAGCTTGT TCTGGAAGTG ACATCAACCA CTTATTAGCA TCACCATTTA CCTAGCACAT 93212 .......... .......... .......... .......... .......... .......... 232 TTTTGGTTCA AGTGATAGTC CAAAGGCTAC TTGTAAAAGA AACTGATACT CTAAAGAGAA 93152 .......... .......... .......... .......... .......... .......... 232 CCAAATGTCC AACATATTTA TCATATTACT TTTTTTTTTT TGCAATTTCT GTATGCGCGA 93092 .......... .......... .......... .......... .......... .......... 232 TTAATGAAAA AAGCTATTGT GATGTTGCAT TACTACTGCT ATATATTTTA TTAATCCTCT 93032 .......... .......... .......... .......... .......... .......... 232 TCCCCCACTA AAACCAAAAG AAAGACTGTT AGAAGTAGTG AATTCAGGCA ATTCAAGACT 92972 .......... .......... .......... .......... .......... .......... 232 AGTAAACAAT GCTCTACTTA CAATTTTTTC TTCTACTTTT CAGGTACCTC AAATA-CCTT 92913 ||||||| ||||| |||| .......... .......... .......... .......... ...GTACCTC AAATACCCTT 249 GTCAAAAAGT A-CTTGAAGA AAAACAACGT TAGGGATTGG CTTAGGGTGA TTGCTTCCAA 92854 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAAAAGT ACCTTGAAGA AAAACAACGT TAGGGATTGG CTTAGGGTGA TTGCTTCCAA 309 CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT GCCGAGAATG AAGCAGATGA 92794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGACAGG AATGTTTATG AGTTGCGCTA CTTCAACATT GCCGAGAATG AAGCAGATGA 369 AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC TTATTTTGAA CCTTATATCA 92734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATTAA ACATGTCTAG TCAATGTCCC TTTTATCTTC TTATTTTGAA CCTTATATCA 429 TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA GATTATTGAT -TTTTTGTCC 92675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTGTTTGAG TTATTAATGA GCCGTATCTT CTCATTTCCA GATTATTGAT NTTTTTGTCC 489 CCTTATCAGT AAAAGAAAAC GTTA-CTTTG A 92645 |||||||||| |||||||||| |||| ||||| | CCTTATCAGT AAAAGAAAAC GTTACCTTTG A 520 hqPGS_C09HBa0278J12.1-_SGN-E335016+ (95186 94962,92928 92645) ******************************************************************************** EST sequence 427 +strand 519 n (File: SGN-E357774+) 1 CCTATTTGAA TAGCAGCAGA AGAGAAATCA AGAGCGTAAA GATGAGCCGA GCAGCAGCAG 61 CAGTGAAGGG CGGGAAGAAG AAGGGGGCAA GCTTCGTCAT CGACTGTTCG AAGCCAGTGG 121 AGGACAGTAT TATGGAGATT GCTTCTCTTG ACAAGTTCCT CCAAGAGAGA ATTAAGGTTG 181 GTGGAAAAGC TGGTGCACTT GGAGATTCCG TTACTGTCAC TCGTGATAAG AATAAAATCA 241 CCGTCACTTG CAACTCCACT TTTTCCAAGA GGTACCTCAA ATACCTTGTC AAAAAGTACT 301 TGAAGAAAAA CAACGTTAGG GATTGGCTTA GGGTGATTGC TTCCAACAAG GACAGGAATG 361 TTTATGAGTT GCGCTACTTC AACATTGCCG AGAATGAAGC AGATGAAGAA GATTAAACAT 421 GTCTAGTCAA TGTCCCTTTT ATCTTCTTAT TTTGAACCTT ATATCATCTG TTTGAGTTAT 481 TAATGAGCCG TATCTTCTCA TTTCCAGATT AAAAAAAAA Predicted gene structure (within gDNA segment 95850 to 91999): Exon 1 95230 94962 ( 269 n); cDNA 3 271 ( 269 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92689 ( 240 n); cDNA 272 511 ( 240 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E357774+ 1.000 509 0.981 C PGS_C09HBa0278J12.1-_SGN-E357774+ (95230 94962,92928 92689) Alignment (genomic DNA sequence = upper lines): TATTTGAATA GCAGCAGAAG AGAAATCAAG AGCGTAAAGA TGAGCCGAGC AGCAGCAGCA 95171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTGAATA GCAGCAGAAG AGAAATCAAG AGCGTAAAGA TGAGCCGAGC AGCAGCAGCA 62 GTGAAGGGCG GGAAGAAGAA GGGGGCAAGC TTCGTCATCG ACTGTTCGAA GCCAGTGGAG 95111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGGCG GGAAGAAGAA GGGGGCAAGC TTCGTCATCG ACTGTTCGAA GCCAGTGGAG 122 GACAGTATTA TGGAGATTGC TTCTCTTGAC AAGTTCCTCC AAGAGAGAAT TAAGGTTGGT 95051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAGTATTA TGGAGATTGC TTCTCTTGAC AAGTTCCTCC AAGAGAGAAT TAAGGTTGGT 182 GGAAAAGCTG GTGCACTTGG AGATTCCGTT ACTGTCACTC GTGATAAGAA TAAAATCACC 94991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAAGCTG GTGCACTTGG AGATTCCGTT ACTGTCACTC GTGATAAGAA TAAAATCACC 242 GTCACTTGCA ACTCCACTTT TTCCAAGAGG TACTGACTAG TACTATATTT CCACTCCTCA 94931 |||||||||| |||||||||| ||||||||| GTCACTTGCA ACTCCACTTT TTCCAAGAG. .......... .......... .......... 271 TTTCGTGTAA TTTGGGTTTT TGCCTGATTT TTAATTGGGT TTATTTGAAA AAATTGATCG 94871 .......... .......... .......... .......... .......... .......... 271 TTGAAACTTC GTGTGGGTCG ACTTTCATTG TAGTTTGATA ATGTTTACAC TGACAGATTG 94811 .......... .......... .......... .......... .......... .......... 271 ATAGGATTTT AGCGTAAACC TATTCTTTTA TTCGGGATGT GCTATGCTCT GCAAGGAGTT 94751 .......... .......... .......... .......... .......... .......... 271 GTTTTGTTTG GAATAGTGTA GTCATTCACG CATTGAGCTT TGAGTCAGTT GATAATGGGT 94691 .......... .......... .......... .......... .......... .......... 271 TAAAATAGAG TTCTTTTTGC AGTTTATTTT AGTTATCAAT AGTGATGATG ATTGTGTGTT 94631 .......... .......... .......... .......... .......... .......... 271 TGTGTTATGT CATTCTACTG CTTGTTTATT CAAAATATTA TCCTATTTAC ATTGAGAAAT 94571 .......... .......... .......... .......... .......... .......... 271 AAGGAGAAAT AGAAGAACTA AAACAGCAGC GTAATATCTT GTAGGTAACC ATTTGTATCT 94511 .......... .......... .......... .......... .......... .......... 271 TGAACTAGGT ATCCTAATTA TCCTTGTAGC TCTTGCTGAA CTTATGGAAC AGATAGTCTA 94451 .......... .......... .......... .......... .......... .......... 271 TGAGCTCTAC ACTTCAACGT CCAAGATTAG AAATCGGGGT TGGCTTTTAT CGTACTTGGA 94391 .......... .......... .......... .......... .......... .......... 271 TTATTTTCAC AACTGACAGA TTGAAATTAA CTTATCATAG CCTCTTTTAT TGTGGCTTGT 94331 .......... .......... .......... .......... .......... .......... 271 TTCTGCTTTA CCAAGAGCTC TTATTTGGAA TAGTGCATTC ATTTATATTT TAAGCTCAGA 94271 .......... .......... .......... .......... .......... .......... 271 GTAGATTAAC AGTGGTTTTC AAAAGAGGTC CTTTTTGCTG TTTATTTTAG TTTGAGTGCC 94211 .......... .......... .......... .......... .......... .......... 271 CTGCACTGCA AGTCTAATAA ATAAGCCCTT CTATTCTGGA GTTATTACAT TGAAGAGGAT 94151 .......... .......... .......... .......... .......... .......... 271 GAGCTTATGT CATTCTACTT TTCGTTCATC TAATGCATTA TCTTACTTAC ATTGAGAAGC 94091 .......... .......... .......... .......... .......... .......... 271 AAAGAAATAA CAGAAAAATT ATGGTGGCGT AGTATCTTGT AGTTATTCGT AAATCCAACT 94031 .......... .......... .......... .......... .......... .......... 271 GTTTATCTTG TAATTATCCG TAAATCCAAC TGTTGGTCTT CTCATATAGC AGGTTCAACC 93971 .......... .......... .......... .......... .......... .......... 271 AGGCCCCAGT AACCACTGTT ACATTTTTGG ACTGTTGTCT GCTCTTTAGT TATTTAGTAA 93911 .......... .......... .......... .......... .......... .......... 271 ATTTTTATAA ATTAGCAGAC CCCTTCTTTT GCTTGCATCT TCTTGATGCC TTCTAATGAA 93851 .......... .......... .......... .......... .......... .......... 271 ATCTCTTTCA TCTAAAAAAG ATATTCATAA CTTGAATAGG GTATGTGCAT AATGTTATAT 93791 .......... .......... .......... .......... .......... .......... 271 AATTATAATA ATCCTCACAG ATCTTCCTGA ATTTATGTTC AGATTGTCAG TGAGCATTAG 93731 .......... .......... .......... .......... .......... .......... 271 CTAGATTGTT TGGCTCCTCC CACTTCTCAG TGAAGTAGAT TCTTAAGTAG GCGGTTGTTG 93671 .......... .......... .......... .......... .......... .......... 271 ATGAGACCAA TTAGACTGCA ACCTAGCCTT TCACTTGTGT CCATTAGTTT GCGTCAAGTG 93611 .......... .......... .......... .......... .......... .......... 271 CAATTTTGTT GATTTCATCT TTTACATCCA TAATCACACA GAATAGTACA CTTGGATTAT 93551 .......... .......... .......... .......... .......... .......... 271 GTCAAATTAC ATGTGAAATA GGCTTGGAAG AACTAATATG TATTAAGTTT GTAACTTGAA 93491 .......... .......... .......... .......... .......... .......... 271 AGAGATAGGT AACTAACATG TAAGCAGGCT TAGTTATAGG TAATTGATAA TATTGATCAT 93431 .......... .......... .......... .......... .......... .......... 271 TATAGATGCT CTTGCTAACT GAAACATCCT TCAGGGCGTG TAAAGCATAT TTTCATGTAT 93371 .......... .......... .......... .......... .......... .......... 271 TTTTTGTTGG GTTCTGAAGA AAGTCTTCAT TTTTTATGTA AGTTTGATGC AGCTGAGTAG 93311 .......... .......... .......... .......... .......... .......... 271 AATCTATAGT GGTATTCTTG TTTCATCTGA TGTATGTTTC TAAGCTTGTT CTGGAAGTGA 93251 .......... .......... .......... .......... .......... .......... 271 CATCAACCAC TTATTAGCAT CACCATTTAC CTAGCACATT TTTGGTTCAA GTGATAGTCC 93191 .......... .......... .......... .......... .......... .......... 271 AAAGGCTACT TGTAAAAGAA ACTGATACTC TAAAGAGAAC CAAATGTCCA ACATATTTAT 93131 .......... .......... .......... .......... .......... .......... 271 CATATTACTT TTTTTTTTTT GCAATTTCTG TATGCGCGAT TAATGAAAAA AGCTATTGTG 93071 .......... .......... .......... .......... .......... .......... 271 ATGTTGCATT ACTACTGCTA TATATTTTAT TAATCCTCTT CCCCCACTAA AACCAAAAGA 93011 .......... .......... .......... .......... .......... .......... 271 AAGACTGTTA GAAGTAGTGA ATTCAGGCAA TTCAAGACTA GTAAACAATG CTCTACTTAC 92951 .......... .......... .......... .......... .......... .......... 271 AATTTTTTCT TCTACTTTTC AGGTACCTCA AATACCTTGT CAAAAAGTAC TTGAAGAAAA 92891 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTACCTCA AATACCTTGT CAAAAAGTAC TTGAAGAAAA 309 ACAACGTTAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTATGAGT 92831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACGTTAG GGATTGGCTT AGGGTGATTG CTTCCAACAA GGACAGGAAT GTTTATGAGT 369 TGCGCTACTT CAACATTGCC GAGAATGAAG CAGATGAAGA AGATTAAACA TGTCTAGTCA 92771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCTACTT CAACATTGCC GAGAATGAAG CAGATGAAGA AGATTAAACA TGTCTAGTCA 429 ATGTCCCTTT TATCTTCTTA TTTTGAACCT TATATCATCT GTTTGAGTTA TTAATGAGCC 92711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCCCTTT TATCTTCTTA TTTTGAACCT TATATCATCT GTTTGAGTTA TTAATGAGCC 489 GTATCTTCTC ATTTCCAGAT TA 92689 |||||||||| |||||||||| || GTATCTTCTC ATTTCCAGAT TA 511 hqPGS_C09HBa0278J12.1-_SGN-E357774+ (95230 94962,92928 92689) ******************************************************************************** EST sequence 375 +strand 482 n (File: SGN-E285777+) 1 TTGAATAGCA GCAGAAGAGA AATCAAGAGC GTAAAGATGA GCCGAGCAGC AGCAGCAGTG 61 AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC GTCATCGACT GTTCGAAGCC AGTGGAGGAC 121 AGTATTATGG AGATTGCTTC TCTTGACAAG TTCCTCCAAG AGAGAATTAA GGTTGGTGGA 181 AAAGCTGGTG CACTTGGAGA TTCCGTTACT GTCACTCGTG ATAAGAATAA AATCACCGTC 241 ACTTGCAACT CCACTTTTTC CAAGAGGTAC CTCAAATACC TTGTCAAAAA GTACTTGAAG 301 AAAAACAACG TTAGGGATTG GCTTAGGGTG ATTGCTTCCA ACAAGGACAG GAATGTTTAT 361 GAGTTGCGCT ACTTCAACAT TGCCGAGAAT GAAGCAGATG AAGAAGATTA AACATGTCTA 421 GTCAATGTCC CTTTTATCTT CTTATTTTGA ACCTTATATC ATCTGTTTGA GTTATTAATG 481 AG Predicted gene structure (within gDNA segment 95827 to 92103): Exon 1 95227 94962 ( 266 n); cDNA 1 266 ( 266 n); score: 1.000 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92928 92713 ( 216 n); cDNA 267 482 ( 216 n); score: 1.000 MATCH C09HBa0278J12.1- SGN-E285777+ 1.000 482 1.000 C PGS_C09HBa0278J12.1-_SGN-E285777+ (95227 94962,92928 92713) Alignment (genomic DNA sequence = upper lines): TTGAATAGCA GCAGAAGAGA AATCAAGAGC GTAAAGATGA GCCGAGCAGC AGCAGCAGTG 95168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATAGCA GCAGAAGAGA AATCAAGAGC GTAAAGATGA GCCGAGCAGC AGCAGCAGTG 60 AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC GTCATCGACT GTTCGAAGCC AGTGGAGGAC 95108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC GTCATCGACT GTTCGAAGCC AGTGGAGGAC 120 AGTATTATGG AGATTGCTTC TCTTGACAAG TTCCTCCAAG AGAGAATTAA GGTTGGTGGA 95048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTATGG AGATTGCTTC TCTTGACAAG TTCCTCCAAG AGAGAATTAA GGTTGGTGGA 180 AAAGCTGGTG CACTTGGAGA TTCCGTTACT GTCACTCGTG ATAAGAATAA AATCACCGTC 94988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGGTG CACTTGGAGA TTCCGTTACT GTCACTCGTG ATAAGAATAA AATCACCGTC 240 ACTTGCAACT CCACTTTTTC CAAGAGGTAC TGACTAGTAC TATATTTCCA CTCCTCATTT 94928 |||||||||| |||||||||| |||||| ACTTGCAACT CCACTTTTTC CAAGAG.... .......... .......... .......... 266 CGTGTAATTT GGGTTTTTGC CTGATTTTTA ATTGGGTTTA TTTGAAAAAA TTGATCGTTG 94868 .......... .......... .......... .......... .......... .......... 266 AAACTTCGTG TGGGTCGACT TTCATTGTAG TTTGATAATG TTTACACTGA CAGATTGATA 94808 .......... .......... .......... .......... .......... .......... 266 GGATTTTAGC GTAAACCTAT TCTTTTATTC GGGATGTGCT ATGCTCTGCA AGGAGTTGTT 94748 .......... .......... .......... .......... .......... .......... 266 TTGTTTGGAA TAGTGTAGTC ATTCACGCAT TGAGCTTTGA GTCAGTTGAT AATGGGTTAA 94688 .......... .......... .......... .......... .......... .......... 266 AATAGAGTTC TTTTTGCAGT TTATTTTAGT TATCAATAGT GATGATGATT GTGTGTTTGT 94628 .......... .......... .......... .......... .......... .......... 266 GTTATGTCAT TCTACTGCTT GTTTATTCAA AATATTATCC TATTTACATT GAGAAATAAG 94568 .......... .......... .......... .......... .......... .......... 266 GAGAAATAGA AGAACTAAAA CAGCAGCGTA ATATCTTGTA GGTAACCATT TGTATCTTGA 94508 .......... .......... .......... .......... .......... .......... 266 ACTAGGTATC CTAATTATCC TTGTAGCTCT TGCTGAACTT ATGGAACAGA TAGTCTATGA 94448 .......... .......... .......... .......... .......... .......... 266 GCTCTACACT TCAACGTCCA AGATTAGAAA TCGGGGTTGG CTTTTATCGT ACTTGGATTA 94388 .......... .......... .......... .......... .......... .......... 266 TTTTCACAAC TGACAGATTG AAATTAACTT ATCATAGCCT CTTTTATTGT GGCTTGTTTC 94328 .......... .......... .......... .......... .......... .......... 266 TGCTTTACCA AGAGCTCTTA TTTGGAATAG TGCATTCATT TATATTTTAA GCTCAGAGTA 94268 .......... .......... .......... .......... .......... .......... 266 GATTAACAGT GGTTTTCAAA AGAGGTCCTT TTTGCTGTTT ATTTTAGTTT GAGTGCCCTG 94208 .......... .......... .......... .......... .......... .......... 266 CACTGCAAGT CTAATAAATA AGCCCTTCTA TTCTGGAGTT ATTACATTGA AGAGGATGAG 94148 .......... .......... .......... .......... .......... .......... 266 CTTATGTCAT TCTACTTTTC GTTCATCTAA TGCATTATCT TACTTACATT GAGAAGCAAA 94088 .......... .......... .......... .......... .......... .......... 266 GAAATAACAG AAAAATTATG GTGGCGTAGT ATCTTGTAGT TATTCGTAAA TCCAACTGTT 94028 .......... .......... .......... .......... .......... .......... 266 TATCTTGTAA TTATCCGTAA ATCCAACTGT TGGTCTTCTC ATATAGCAGG TTCAACCAGG 93968 .......... .......... .......... .......... .......... .......... 266 CCCCAGTAAC CACTGTTACA TTTTTGGACT GTTGTCTGCT CTTTAGTTAT TTAGTAAATT 93908 .......... .......... .......... .......... .......... .......... 266 TTTATAAATT AGCAGACCCC TTCTTTTGCT TGCATCTTCT TGATGCCTTC TAATGAAATC 93848 .......... .......... .......... .......... .......... .......... 266 TCTTTCATCT AAAAAAGATA TTCATAACTT GAATAGGGTA TGTGCATAAT GTTATATAAT 93788 .......... .......... .......... .......... .......... .......... 266 TATAATAATC CTCACAGATC TTCCTGAATT TATGTTCAGA TTGTCAGTGA GCATTAGCTA 93728 .......... .......... .......... .......... .......... .......... 266 GATTGTTTGG CTCCTCCCAC TTCTCAGTGA AGTAGATTCT TAAGTAGGCG GTTGTTGATG 93668 .......... .......... .......... .......... .......... .......... 266 AGACCAATTA GACTGCAACC TAGCCTTTCA CTTGTGTCCA TTAGTTTGCG TCAAGTGCAA 93608 .......... .......... .......... .......... .......... .......... 266 TTTTGTTGAT TTCATCTTTT ACATCCATAA TCACACAGAA TAGTACACTT GGATTATGTC 93548 .......... .......... .......... .......... .......... .......... 266 AAATTACATG TGAAATAGGC TTGGAAGAAC TAATATGTAT TAAGTTTGTA ACTTGAAAGA 93488 .......... .......... .......... .......... .......... .......... 266 GATAGGTAAC TAACATGTAA GCAGGCTTAG TTATAGGTAA TTGATAATAT TGATCATTAT 93428 .......... .......... .......... .......... .......... .......... 266 AGATGCTCTT GCTAACTGAA ACATCCTTCA GGGCGTGTAA AGCATATTTT CATGTATTTT 93368 .......... .......... .......... .......... .......... .......... 266 TTGTTGGGTT CTGAAGAAAG TCTTCATTTT TTATGTAAGT TTGATGCAGC TGAGTAGAAT 93308 .......... .......... .......... .......... .......... .......... 266 CTATAGTGGT ATTCTTGTTT CATCTGATGT ATGTTTCTAA GCTTGTTCTG GAAGTGACAT 93248 .......... .......... .......... .......... .......... .......... 266 CAACCACTTA TTAGCATCAC CATTTACCTA GCACATTTTT GGTTCAAGTG ATAGTCCAAA 93188 .......... .......... .......... .......... .......... .......... 266 GGCTACTTGT AAAAGAAACT GATACTCTAA AGAGAACCAA ATGTCCAACA TATTTATCAT 93128 .......... .......... .......... .......... .......... .......... 266 ATTACTTTTT TTTTTTTGCA ATTTCTGTAT GCGCGATTAA TGAAAAAAGC TATTGTGATG 93068 .......... .......... .......... .......... .......... .......... 266 TTGCATTACT ACTGCTATAT ATTTTATTAA TCCTCTTCCC CCACTAAAAC CAAAAGAAAG 93008 .......... .......... .......... .......... .......... .......... 266 ACTGTTAGAA GTAGTGAATT CAGGCAATTC AAGACTAGTA AACAATGCTC TACTTACAAT 92948 .......... .......... .......... .......... .......... .......... 266 TTTTTCTTCT ACTTTTCAGG TACCTCAAAT ACCTTGTCAA AAAGTACTTG AAGAAAAACA 92888 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TACCTCAAAT ACCTTGTCAA AAAGTACTTG AAGAAAAACA 307 ACGTTAGGGA TTGGCTTAGG GTGATTGCTT CCAACAAGGA CAGGAATGTT TATGAGTTGC 92828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTAGGGA TTGGCTTAGG GTGATTGCTT CCAACAAGGA CAGGAATGTT TATGAGTTGC 367 GCTACTTCAA CATTGCCGAG AATGAAGCAG ATGAAGAAGA TTAAACATGT CTAGTCAATG 92768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACTTCAA CATTGCCGAG AATGAAGCAG ATGAAGAAGA TTAAACATGT CTAGTCAATG 427 TCCCTTTTAT CTTCTTATTT TGAACCTTAT ATCATCTGTT TGAGTTATTA ATGAG 92713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCCTTTTAT CTTCTTATTT TGAACCTTAT ATCATCTGTT TGAGTTATTA ATGAG 482 hqPGS_C09HBa0278J12.1-_SGN-E285777+ (95227 94962,92928 92713) ******************************************************************************** EST sequence 196 +strand 573 n (File: SGN-E306494+) 1 TCGAGTTTCA TCCTCAGAAG AGAAATACAG AGAGTGTAAA GATGAGCCGA GCAGCAGCAG 61 CAGCAGTGAA GGGCGGGAAG AAGAAGGGGG CAAGCTTCGT CATTGACTGT TCGAAGCCGG 121 TAGAAGACAG TATCATGGAG ATTGCTTCTC TTGACAAGTT CCTTCAAGAG AGGATTAAGG 181 TTGGTGGAAA AGCTGGTGCT CTTGGGGATT CCGTTACTGT TACTCGTGAC AAGAACAAGA 241 TCACCGTCAC CTGCAACTCA ACTTTTTCCA AGAGGTACCT CAAATACCTT GTCAAAAAGT 301 ACTTGAAGAA AAATAACGTC AGGGATTGGC TTAGGGTGAT TGCTTCCAAC AAGGACAGGA 361 ATGTTTACGA ATTGCGCTAC TTCAACATTG CTGAGAATGA AGCAGATGAA GAAGATTAAA 421 CATGACCATT CAATGTCTCT CTTTATCTTC TTTCTTTAGT CGGCCTTCAC TTTTTGATCC 481 TTGTATCATC ACTAATGAAT CCTGTCTTCT CATTTCTAGA TTTTGTTTTT GCAGTTTGCT 541 TATCAGTAAA AGAAAACATT ACATCGATAC TTT Predicted gene structure (within gDNA segment 96147 to 90679): Exon 1 95323 95311 ( 13 n); cDNA 1 14 ( 14 n); score: 0.654 Intron 1 95310 95217 ( 94 n); Pd: 0.876 (s: 0), Pa: 0.848 (s: 0.70) Exon 2 95216 94962 ( 255 n); cDNA 15 274 ( 260 n); score: 0.888 Intron 2 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 3 92928 92725 ( 204 n); cDNA 275 477 ( 203 n); score: 0.885 MATCH C09HBa0278J12.1- SGN-E306494+ 0.887 472 0.824 C PGS_C09HBa0278J12.1-_SGN-E306494+ (95323 95311,95216 94962,92928 92725) Alignment (genomic DNA sequence = upper lines): TCGAATTTC- TCCCGTATGT ATTTTCCAAC TTTTTCTCCG GCGATGAACA TGAGCTTTGT 95265 |||| |||| ||| TCGAGTTTCA TCCT...... .......... .......... .......... .......... 14 GTTTGAGATC TGACGATTTT TGTTTTGTTT TCAGTATTTG AATAGCAGCA GAAGAGAAAT 95205 || |||||||||| .......... .......... .......... .......... ........CA GAAGAGAAAT 26 -CA-AGAGCG TAAAGATGAG CC--G-AGCA GCAGCAGCAG TGAAGGGCGG GAAGAAGAAG 95150 || |||| | |||||||||| || | |||| |||||||||| |||||||||| |||||||||| ACAGAGAGTG TAAAGATGAG CCGAGCAGCA GCAGCAGCAG TGAAGGGCGG GAAGAAGAAG 86 GGGGCAAGCT TCGTCATCGA CTGTTCGAAG CCAGTGGAGG ACAGTATTAT GGAGATTGCT 95090 |||||||||| ||||||| || |||||||||| || || || | ||||||| || |||||||||| GGGGCAAGCT TCGTCATTGA CTGTTCGAAG CCGGTAGAAG ACAGTATCAT GGAGATTGCT 146 TCTCTTGACA AGTTCCTCCA AGAGAGAATT AAGGTTGGTG GAAAAGCTGG TGCACTTGGA 95030 |||||||||| ||||||| || |||||| ||| |||||||||| |||||||||| ||| ||||| TCTCTTGACA AGTTCCTTCA AGAGAGGATT AAGGTTGGTG GAAAAGCTGG TGCTCTTGGG 206 GATTCCGTTA CTGTCACTCG TGATAAGAAT AAAATCACCG TCACTTGCAA CTCCACTTTT 94970 |||||||||| |||| ||||| ||| ||||| || ||||||| |||| ||||| ||| |||||| GATTCCGTTA CTGTTACTCG TGACAAGAAC AAGATCACCG TCACCTGCAA CTCAACTTTT 266 TCCAAGAGGT ACTGACTAGT ACTATATTTC CACTCCTCAT TTCGTGTAAT TTGGGTTTTT 94910 |||||||| TCCAAGAG.. .......... .......... .......... .......... .......... 274 GCCTGATTTT TAATTGGGTT TATTTGAAAA AATTGATCGT TGAAACTTCG TGTGGGTCGA 94850 .......... .......... .......... .......... .......... .......... 274 CTTTCATTGT AGTTTGATAA TGTTTACACT GACAGATTGA TAGGATTTTA GCGTAAACCT 94790 .......... .......... .......... .......... .......... .......... 274 ATTCTTTTAT TCGGGATGTG CTATGCTCTG CAAGGAGTTG TTTTGTTTGG AATAGTGTAG 94730 .......... .......... .......... .......... .......... .......... 274 TCATTCACGC ATTGAGCTTT GAGTCAGTTG ATAATGGGTT AAAATAGAGT TCTTTTTGCA 94670 .......... .......... .......... .......... .......... .......... 274 GTTTATTTTA GTTATCAATA GTGATGATGA TTGTGTGTTT GTGTTATGTC ATTCTACTGC 94610 .......... .......... .......... .......... .......... .......... 274 TTGTTTATTC AAAATATTAT CCTATTTACA TTGAGAAATA AGGAGAAATA GAAGAACTAA 94550 .......... .......... .......... .......... .......... .......... 274 AACAGCAGCG TAATATCTTG TAGGTAACCA TTTGTATCTT GAACTAGGTA TCCTAATTAT 94490 .......... .......... .......... .......... .......... .......... 274 CCTTGTAGCT CTTGCTGAAC TTATGGAACA GATAGTCTAT GAGCTCTACA CTTCAACGTC 94430 .......... .......... .......... .......... .......... .......... 274 CAAGATTAGA AATCGGGGTT GGCTTTTATC GTACTTGGAT TATTTTCACA ACTGACAGAT 94370 .......... .......... .......... .......... .......... .......... 274 TGAAATTAAC TTATCATAGC CTCTTTTATT GTGGCTTGTT TCTGCTTTAC CAAGAGCTCT 94310 .......... .......... .......... .......... .......... .......... 274 TATTTGGAAT AGTGCATTCA TTTATATTTT AAGCTCAGAG TAGATTAACA GTGGTTTTCA 94250 .......... .......... .......... .......... .......... .......... 274 AAAGAGGTCC TTTTTGCTGT TTATTTTAGT TTGAGTGCCC TGCACTGCAA GTCTAATAAA 94190 .......... .......... .......... .......... .......... .......... 274 TAAGCCCTTC TATTCTGGAG TTATTACATT GAAGAGGATG AGCTTATGTC ATTCTACTTT 94130 .......... .......... .......... .......... .......... .......... 274 TCGTTCATCT AATGCATTAT CTTACTTACA TTGAGAAGCA AAGAAATAAC AGAAAAATTA 94070 .......... .......... .......... .......... .......... .......... 274 TGGTGGCGTA GTATCTTGTA GTTATTCGTA AATCCAACTG TTTATCTTGT AATTATCCGT 94010 .......... .......... .......... .......... .......... .......... 274 AAATCCAACT GTTGGTCTTC TCATATAGCA GGTTCAACCA GGCCCCAGTA ACCACTGTTA 93950 .......... .......... .......... .......... .......... .......... 274 CATTTTTGGA CTGTTGTCTG CTCTTTAGTT ATTTAGTAAA TTTTTATAAA TTAGCAGACC 93890 .......... .......... .......... .......... .......... .......... 274 CCTTCTTTTG CTTGCATCTT CTTGATGCCT TCTAATGAAA TCTCTTTCAT CTAAAAAAGA 93830 .......... .......... .......... .......... .......... .......... 274 TATTCATAAC TTGAATAGGG TATGTGCATA ATGTTATATA ATTATAATAA TCCTCACAGA 93770 .......... .......... .......... .......... .......... .......... 274 TCTTCCTGAA TTTATGTTCA GATTGTCAGT GAGCATTAGC TAGATTGTTT GGCTCCTCCC 93710 .......... .......... .......... .......... .......... .......... 274 ACTTCTCAGT GAAGTAGATT CTTAAGTAGG CGGTTGTTGA TGAGACCAAT TAGACTGCAA 93650 .......... .......... .......... .......... .......... .......... 274 CCTAGCCTTT CACTTGTGTC CATTAGTTTG CGTCAAGTGC AATTTTGTTG ATTTCATCTT 93590 .......... .......... .......... .......... .......... .......... 274 TTACATCCAT AATCACACAG AATAGTACAC TTGGATTATG TCAAATTACA TGTGAAATAG 93530 .......... .......... .......... .......... .......... .......... 274 GCTTGGAAGA ACTAATATGT ATTAAGTTTG TAACTTGAAA GAGATAGGTA ACTAACATGT 93470 .......... .......... .......... .......... .......... .......... 274 AAGCAGGCTT AGTTATAGGT AATTGATAAT ATTGATCATT ATAGATGCTC TTGCTAACTG 93410 .......... .......... .......... .......... .......... .......... 274 AAACATCCTT CAGGGCGTGT AAAGCATATT TTCATGTATT TTTTGTTGGG TTCTGAAGAA 93350 .......... .......... .......... .......... .......... .......... 274 AGTCTTCATT TTTTATGTAA GTTTGATGCA GCTGAGTAGA ATCTATAGTG GTATTCTTGT 93290 .......... .......... .......... .......... .......... .......... 274 TTCATCTGAT GTATGTTTCT AAGCTTGTTC TGGAAGTGAC ATCAACCACT TATTAGCATC 93230 .......... .......... .......... .......... .......... .......... 274 ACCATTTACC TAGCACATTT TTGGTTCAAG TGATAGTCCA AAGGCTACTT GTAAAAGAAA 93170 .......... .......... .......... .......... .......... .......... 274 CTGATACTCT AAAGAGAACC AAATGTCCAA CATATTTATC ATATTACTTT TTTTTTTTTG 93110 .......... .......... .......... .......... .......... .......... 274 CAATTTCTGT ATGCGCGATT AATGAAAAAA GCTATTGTGA TGTTGCATTA CTACTGCTAT 93050 .......... .......... .......... .......... .......... .......... 274 ATATTTTATT AATCCTCTTC CCCCACTAAA ACCAAAAGAA AGACTGTTAG AAGTAGTGAA 92990 .......... .......... .......... .......... .......... .......... 274 TTCAGGCAAT TCAAGACTAG TAAACAATGC TCTACTTACA ATTTTTTCTT CTACTTTTCA 92930 .......... .......... .......... .......... .......... .......... 274 GGTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA CAACGTTAGG GATTGGCTTA 92870 ||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| .GTACCTCAA ATACCTTGTC AAAAAGTACT TGAAGAAAAA TAACGTCAGG GATTGGCTTA 333 GGGTGATTGC TTCCAACAAG GACAGGAATG TTTATGAGTT GCGCTACTTC AACATTGCCG 92810 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||| | GGGTGATTGC TTCCAACAAG GACAGGAATG TTTACGAATT GCGCTACTTC AACATTGCTG 393 AGAATGAAGC AGATGAAGAA GATTAAACAT GTCTAGTCAA TGTCCCT-TT TATCTTCTTA 92751 |||||||||| |||||||||| |||||||||| | | | |||| |||| || || ||||||||| AGAATGAAGC AGATGAAGAA GATTAAACAT GACCATTCAA TGTCTCTCTT TATCTTCTT- 452 TTTTGAACCT TATATCATCT GTTTGA 92725 | || | | ||| || ||||| TCTTTAGTCG GCCTTCA-CT TTTTGA 477 hqPGS_C09HBa0278J12.1-_SGN-E306494+ (95216 94962,92928 92725) ******************************************************************************** EST sequence 290 +strand 585 n (File: SGN-E287412+) 1 TGGAACGTAA CCTAAAATAG GGCCAAAAGT GCAAATTAGA GAGAGGTGCC ACATTTAGCA 61 AGTAGGAACG AAGGAAAACC CTAATTTAAC AGAGTCACCA CTTTCCATAC ACTCACACTA 121 AGCCGGGGAC GTCGAGTTTC ATCCTAAGAG AAATACAGAG AGTGTAAAGA TGAGCCGAGC 181 AGCAGCAGCA GCAGTGAAAG GCGGGAAGAA GAAAGGGGCA AGCTTCGTCA TTGACTGTTC 241 GAAGCCGGTA GAAGACAGTA TCATGGAGAT TGCTTCTCTT GACAAGTTCC TTCAAGAGAG 301 GATTAAGGTT GGTGGAAAAG CTGGTGCTCT TGGGGATTCC GTTACTGTTA CTCGTGACAA 361 GAACAAGATC ACCGTCACCT GCAACTCAAC TTTTTCCAAG AGGTACCTCA AATACCTTGT 421 CAAAAAGTAC TTGAAGAAAA ATAACGTCAG GGATTGGCTT ANGGTGATTG CTTCCAACAA 481 GGACAGGAAT GTTTACGAAT TGCGCTACTT CAACATTGCT GAGAATGAAG CAGATGAAGA 541 AGATTAAACA TGACCATTCA ATGTCTCTCT TTATCTTCTT TCTTT Predicted gene structure (within gDNA segment 97427 to 91839): Exon 1 95387 95324 ( 64 n); cDNA 64 128 ( 65 n); score: 0.750 Intron 1 95323 95231 ( 93 n); Pd: 0.000 (s: 0.72), Pa: 0.992 (s: 0.67) Exon 2 95230 94962 ( 269 n); cDNA 129 402 ( 274 n); score: 0.849 Intron 2 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 3 92928 92747 ( 182 n); cDNA 403 585 ( 183 n); score: 0.920 MATCH C09HBa0278J12.1- SGN-E287412+ 0.862 515 0.880 C PGS_C09HBa0278J12.1-_SGN-E287412+ (95387 95324,95230 94962,92928 92747) Alignment (genomic DNA sequence = upper lines): AGGAACG-AG GAAAACCCTA ATTAAATATA ATCATCCAC- TTCCATACAC TCGCAGTCGG 95330 ||||||| || |||||||||| ||| || | | ||| |||| |||||||||| || || | | AGGAACGAAG GAAAACCCTA ATTTAACAGA GTCA-CCACT TTCCATACAC TCACACTAAG 122 CCGCCGTCGA ATTTCTCCCG TATGTATTTT CCAACTTTTT CTCCGGCGAT GAACATGAGC 95270 ||| | CCGGGG.... .......... .......... .......... .......... .......... 128 TTTGTGTTTG AGATCTGACG ATTTTTGTTT TGTTTTCAGT ATTTGAATAG CAGCAGAAGA 95210 | || | || | |||| .......... .......... .......... .........A CGTCGAGTTT CATCCTAAGA 149 GAAAT-CA-A GAGCGTAAAG ATGAGCCGAG CAGCAGCAGC A---GTGAAG GGCGGGAAGA 95155 ||||| || | ||| |||||| |||||||||| |||||||||| | ||||| |||||||||| GAAATACAGA GAGTGTAAAG ATGAGCCGAG CAGCAGCAGC AGCAGTGAAA GGCGGGAAGA 209 AGAAGGGGGC AAGCTTCGTC ATCGACTGTT CGAAGCCAGT GGAGGACAGT ATTATGGAGA 95095 |||| ||||| |||||||||| || ||||||| ||||||| || || |||||| || ||||||| AGAAAGGGGC AAGCTTCGTC ATTGACTGTT CGAAGCCGGT AGAAGACAGT ATCATGGAGA 269 TTGCTTCTCT TGACAAGTTC CTCCAAGAGA GAATTAAGGT TGGTGGAAAA GCTGGTGCAC 95035 |||||||||| |||||||||| || ||||||| | |||||||| |||||||||| |||||||| | TTGCTTCTCT TGACAAGTTC CTTCAAGAGA GGATTAAGGT TGGTGGAAAA GCTGGTGCTC 329 TTGGAGATTC CGTTACTGTC ACTCGTGATA AGAATAAAAT CACCGTCACT TGCAACTCCA 94975 |||| ||||| ||||||||| |||||||| | |||| || || ||||||||| |||||||| | TTGGGGATTC CGTTACTGTT ACTCGTGACA AGAACAAGAT CACCGTCACC TGCAACTCAA 389 CTTTTTCCAA GAGGTACTGA CTAGTACTAT ATTTCCACTC CTCATTTCGT GTAATTTGGG 94915 |||||||||| ||| CTTTTTCCAA GAG....... .......... .......... .......... .......... 402 TTTTTGCCTG ATTTTTAATT GGGTTTATTT GAAAAAATTG ATCGTTGAAA CTTCGTGTGG 94855 .......... .......... .......... .......... .......... .......... 402 GTCGACTTTC ATTGTAGTTT GATAATGTTT ACACTGACAG ATTGATAGGA TTTTAGCGTA 94795 .......... .......... .......... .......... .......... .......... 402 AACCTATTCT TTTATTCGGG ATGTGCTATG CTCTGCAAGG AGTTGTTTTG TTTGGAATAG 94735 .......... .......... .......... .......... .......... .......... 402 TGTAGTCATT CACGCATTGA GCTTTGAGTC AGTTGATAAT GGGTTAAAAT AGAGTTCTTT 94675 .......... .......... .......... .......... .......... .......... 402 TTGCAGTTTA TTTTAGTTAT CAATAGTGAT GATGATTGTG TGTTTGTGTT ATGTCATTCT 94615 .......... .......... .......... .......... .......... .......... 402 ACTGCTTGTT TATTCAAAAT ATTATCCTAT TTACATTGAG AAATAAGGAG AAATAGAAGA 94555 .......... .......... .......... .......... .......... .......... 402 ACTAAAACAG CAGCGTAATA TCTTGTAGGT AACCATTTGT ATCTTGAACT AGGTATCCTA 94495 .......... .......... .......... .......... .......... .......... 402 ATTATCCTTG TAGCTCTTGC TGAACTTATG GAACAGATAG TCTATGAGCT CTACACTTCA 94435 .......... .......... .......... .......... .......... .......... 402 ACGTCCAAGA TTAGAAATCG GGGTTGGCTT TTATCGTACT TGGATTATTT TCACAACTGA 94375 .......... .......... .......... .......... .......... .......... 402 CAGATTGAAA TTAACTTATC ATAGCCTCTT TTATTGTGGC TTGTTTCTGC TTTACCAAGA 94315 .......... .......... .......... .......... .......... .......... 402 GCTCTTATTT GGAATAGTGC ATTCATTTAT ATTTTAAGCT CAGAGTAGAT TAACAGTGGT 94255 .......... .......... .......... .......... .......... .......... 402 TTTCAAAAGA GGTCCTTTTT GCTGTTTATT TTAGTTTGAG TGCCCTGCAC TGCAAGTCTA 94195 .......... .......... .......... .......... .......... .......... 402 ATAAATAAGC CCTTCTATTC TGGAGTTATT ACATTGAAGA GGATGAGCTT ATGTCATTCT 94135 .......... .......... .......... .......... .......... .......... 402 ACTTTTCGTT CATCTAATGC ATTATCTTAC TTACATTGAG AAGCAAAGAA ATAACAGAAA 94075 .......... .......... .......... .......... .......... .......... 402 AATTATGGTG GCGTAGTATC TTGTAGTTAT TCGTAAATCC AACTGTTTAT CTTGTAATTA 94015 .......... .......... .......... .......... .......... .......... 402 TCCGTAAATC CAACTGTTGG TCTTCTCATA TAGCAGGTTC AACCAGGCCC CAGTAACCAC 93955 .......... .......... .......... .......... .......... .......... 402 TGTTACATTT TTGGACTGTT GTCTGCTCTT TAGTTATTTA GTAAATTTTT ATAAATTAGC 93895 .......... .......... .......... .......... .......... .......... 402 AGACCCCTTC TTTTGCTTGC ATCTTCTTGA TGCCTTCTAA TGAAATCTCT TTCATCTAAA 93835 .......... .......... .......... .......... .......... .......... 402 AAAGATATTC ATAACTTGAA TAGGGTATGT GCATAATGTT ATATAATTAT AATAATCCTC 93775 .......... .......... .......... .......... .......... .......... 402 ACAGATCTTC CTGAATTTAT GTTCAGATTG TCAGTGAGCA TTAGCTAGAT TGTTTGGCTC 93715 .......... .......... .......... .......... .......... .......... 402 CTCCCACTTC TCAGTGAAGT AGATTCTTAA GTAGGCGGTT GTTGATGAGA CCAATTAGAC 93655 .......... .......... .......... .......... .......... .......... 402 TGCAACCTAG CCTTTCACTT GTGTCCATTA GTTTGCGTCA AGTGCAATTT TGTTGATTTC 93595 .......... .......... .......... .......... .......... .......... 402 ATCTTTTACA TCCATAATCA CACAGAATAG TACACTTGGA TTATGTCAAA TTACATGTGA 93535 .......... .......... .......... .......... .......... .......... 402 AATAGGCTTG GAAGAACTAA TATGTATTAA GTTTGTAACT TGAAAGAGAT AGGTAACTAA 93475 .......... .......... .......... .......... .......... .......... 402 CATGTAAGCA GGCTTAGTTA TAGGTAATTG ATAATATTGA TCATTATAGA TGCTCTTGCT 93415 .......... .......... .......... .......... .......... .......... 402 AACTGAAACA TCCTTCAGGG CGTGTAAAGC ATATTTTCAT GTATTTTTTG TTGGGTTCTG 93355 .......... .......... .......... .......... .......... .......... 402 AAGAAAGTCT TCATTTTTTA TGTAAGTTTG ATGCAGCTGA GTAGAATCTA TAGTGGTATT 93295 .......... .......... .......... .......... .......... .......... 402 CTTGTTTCAT CTGATGTATG TTTCTAAGCT TGTTCTGGAA GTGACATCAA CCACTTATTA 93235 .......... .......... .......... .......... .......... .......... 402 GCATCACCAT TTACCTAGCA CATTTTTGGT TCAAGTGATA GTCCAAAGGC TACTTGTAAA 93175 .......... .......... .......... .......... .......... .......... 402 AGAAACTGAT ACTCTAAAGA GAACCAAATG TCCAACATAT TTATCATATT ACTTTTTTTT 93115 .......... .......... .......... .......... .......... .......... 402 TTTTGCAATT TCTGTATGCG CGATTAATGA AAAAAGCTAT TGTGATGTTG CATTACTACT 93055 .......... .......... .......... .......... .......... .......... 402 GCTATATATT TTATTAATCC TCTTCCCCCA CTAAAACCAA AAGAAAGACT GTTAGAAGTA 92995 .......... .......... .......... .......... .......... .......... 402 GTGAATTCAG GCAATTCAAG ACTAGTAAAC AATGCTCTAC TTACAATTTT TTCTTCTACT 92935 .......... .......... .......... .......... .......... .......... 402 TTTCAGGTAC CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAACAACG TTAGGGATTG 92875 |||| |||||||||| |||||||||| |||||||||| ||||| |||| | |||||||| ......GTAC CTCAAATACC TTGTCAAAAA GTACTTGAAG AAAAATAACG TCAGGGATTG 456 GCTTAGGGTG ATTGCTTCCA ACAAGGACAG GAATGTTTAT GAGTTGCGCT ACTTCAACAT 92815 ||||| |||| |||||||||| |||||||||| ||||||||| || ||||||| |||||||||| GCTTANGGTG ATTGCTTCCA ACAAGGACAG GAATGTTTAC GAATTGCGCT ACTTCAACAT 516 TGCCGAGAAT GAAGCAGATG AAGAAGATTA AACATGTCTA GTCAATGTCC CT-TTTATCT 92756 ||| |||||| |||||||||| |||||||||| |||||| | | |||||||| || ||||||| TGCTGAGAAT GAAGCAGATG AAGAAGATTA AACATGACCA TTCAATGTCT CTCTTTATCT 576 TCTTATTTT 92747 |||| ||| TCTTTCTTT 585 hqPGS_C09HBa0278J12.1-_SGN-E287412+ (95387 95324,95230 94962,92928 92747) ******************************************************************************** EST sequence 330 +strand 470 n (File: SGN-E276642+) 1 TTTAACAGAG TCACCACTTC CATACACTCA CACTAGGCCG TGGACGTCGA GTTTCATCCT 61 CAGAAGAGAA ATACAGAGAG TGTAAAGATG AGCCGAGCAG CAGCAGCAGC AGTGAAGGGC 121 GGGAAGAAGA AGGGGGCAAG CTTCGTCATT GACTGTTCGA AGCCGGTAGA AGACAGTATC 181 ATGGAGATTG CTTCTCTTGA CAAGTTCCTT CAAGAGAGGA TTAAGGTTGG TGGAAAAGCT 241 GGTGCTCTTG GGGATTCCGT TACTGTTACT CGTGACAAGA ACAAGATCAC CGTCACCTGC 301 AACTCAACTT TTTCCAAGAG GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT 361 AACGTCAGGG ATTGGCTTAG GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG 421 CGCTACTTCA ACATTGCTGA GAATGAAGCA GATGAAGAAG ATTAAACATG Predicted gene structure (within gDNA segment 96607 to 92169): Exon 1 95216 94962 ( 255 n); cDNA 61 320 ( 260 n); score: 0.888 Intron 1 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 2 92928 92780 ( 149 n); cDNA 321 469 ( 149 n); score: 0.966 MATCH C09HBa0278J12.1- SGN-E276642+ 0.917 404 0.860 C PGS_C09HBa0278J12.1-_SGN-E276642+ (95216 94962,92928 92780) Alignment (genomic DNA sequence = upper lines): CAGAAGAGAA AT-CA-AGAG CGTAAAGATG AGCCGAGCAG CAGCAGC--- AGTGAAGGGC 95162 |||||||||| || || |||| ||||||||| |||||||||| ||||||| |||||||||| CAGAAGAGAA ATACAGAGAG TGTAAAGATG AGCCGAGCAG CAGCAGCAGC AGTGAAGGGC 120 GGGAAGAAGA AGGGGGCAAG CTTCGTCATC GACTGTTCGA AGCCAGTGGA GGACAGTATT 95102 |||||||||| |||||||||| ||||||||| |||||||||| |||| || || |||||||| GGGAAGAAGA AGGGGGCAAG CTTCGTCATT GACTGTTCGA AGCCGGTAGA AGACAGTATC 180 ATGGAGATTG CTTCTCTTGA CAAGTTCCTC CAAGAGAGAA TTAAGGTTGG TGGAAAAGCT 95042 |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| ATGGAGATTG CTTCTCTTGA CAAGTTCCTT CAAGAGAGGA TTAAGGTTGG TGGAAAAGCT 240 GGTGCACTTG GAGATTCCGT TACTGTCACT CGTGATAAGA ATAAAATCAC CGTCACTTGC 94982 ||||| |||| | |||||||| |||||| ||| ||||| |||| | || ||||| |||||| ||| GGTGCTCTTG GGGATTCCGT TACTGTTACT CGTGACAAGA ACAAGATCAC CGTCACCTGC 300 AACTCCACTT TTTCCAAGAG GTACTGACTA GTACTATATT TCCACTCCTC ATTTCGTGTA 94922 ||||| |||| |||||||||| AACTCAACTT TTTCCAAGAG .......... .......... .......... .......... 320 ATTTGGGTTT TTGCCTGATT TTTAATTGGG TTTATTTGAA AAAATTGATC GTTGAAACTT 94862 .......... .......... .......... .......... .......... .......... 320 CGTGTGGGTC GACTTTCATT GTAGTTTGAT AATGTTTACA CTGACAGATT GATAGGATTT 94802 .......... .......... .......... .......... .......... .......... 320 TAGCGTAAAC CTATTCTTTT ATTCGGGATG TGCTATGCTC TGCAAGGAGT TGTTTTGTTT 94742 .......... .......... .......... .......... .......... .......... 320 GGAATAGTGT AGTCATTCAC GCATTGAGCT TTGAGTCAGT TGATAATGGG TTAAAATAGA 94682 .......... .......... .......... .......... .......... .......... 320 GTTCTTTTTG CAGTTTATTT TAGTTATCAA TAGTGATGAT GATTGTGTGT TTGTGTTATG 94622 .......... .......... .......... .......... .......... .......... 320 TCATTCTACT GCTTGTTTAT TCAAAATATT ATCCTATTTA CATTGAGAAA TAAGGAGAAA 94562 .......... .......... .......... .......... .......... .......... 320 TAGAAGAACT AAAACAGCAG CGTAATATCT TGTAGGTAAC CATTTGTATC TTGAACTAGG 94502 .......... .......... .......... .......... .......... .......... 320 TATCCTAATT ATCCTTGTAG CTCTTGCTGA ACTTATGGAA CAGATAGTCT ATGAGCTCTA 94442 .......... .......... .......... .......... .......... .......... 320 CACTTCAACG TCCAAGATTA GAAATCGGGG TTGGCTTTTA TCGTACTTGG ATTATTTTCA 94382 .......... .......... .......... .......... .......... .......... 320 CAACTGACAG ATTGAAATTA ACTTATCATA GCCTCTTTTA TTGTGGCTTG TTTCTGCTTT 94322 .......... .......... .......... .......... .......... .......... 320 ACCAAGAGCT CTTATTTGGA ATAGTGCATT CATTTATATT TTAAGCTCAG AGTAGATTAA 94262 .......... .......... .......... .......... .......... .......... 320 CAGTGGTTTT CAAAAGAGGT CCTTTTTGCT GTTTATTTTA GTTTGAGTGC CCTGCACTGC 94202 .......... .......... .......... .......... .......... .......... 320 AAGTCTAATA AATAAGCCCT TCTATTCTGG AGTTATTACA TTGAAGAGGA TGAGCTTATG 94142 .......... .......... .......... .......... .......... .......... 320 TCATTCTACT TTTCGTTCAT CTAATGCATT ATCTTACTTA CATTGAGAAG CAAAGAAATA 94082 .......... .......... .......... .......... .......... .......... 320 ACAGAAAAAT TATGGTGGCG TAGTATCTTG TAGTTATTCG TAAATCCAAC TGTTTATCTT 94022 .......... .......... .......... .......... .......... .......... 320 GTAATTATCC GTAAATCCAA CTGTTGGTCT TCTCATATAG CAGGTTCAAC CAGGCCCCAG 93962 .......... .......... .......... .......... .......... .......... 320 TAACCACTGT TACATTTTTG GACTGTTGTC TGCTCTTTAG TTATTTAGTA AATTTTTATA 93902 .......... .......... .......... .......... .......... .......... 320 AATTAGCAGA CCCCTTCTTT TGCTTGCATC TTCTTGATGC CTTCTAATGA AATCTCTTTC 93842 .......... .......... .......... .......... .......... .......... 320 ATCTAAAAAA GATATTCATA ACTTGAATAG GGTATGTGCA TAATGTTATA TAATTATAAT 93782 .......... .......... .......... .......... .......... .......... 320 AATCCTCACA GATCTTCCTG AATTTATGTT CAGATTGTCA GTGAGCATTA GCTAGATTGT 93722 .......... .......... .......... .......... .......... .......... 320 TTGGCTCCTC CCACTTCTCA GTGAAGTAGA TTCTTAAGTA GGCGGTTGTT GATGAGACCA 93662 .......... .......... .......... .......... .......... .......... 320 ATTAGACTGC AACCTAGCCT TTCACTTGTG TCCATTAGTT TGCGTCAAGT GCAATTTTGT 93602 .......... .......... .......... .......... .......... .......... 320 TGATTTCATC TTTTACATCC ATAATCACAC AGAATAGTAC ACTTGGATTA TGTCAAATTA 93542 .......... .......... .......... .......... .......... .......... 320 CATGTGAAAT AGGCTTGGAA GAACTAATAT GTATTAAGTT TGTAACTTGA AAGAGATAGG 93482 .......... .......... .......... .......... .......... .......... 320 TAACTAACAT GTAAGCAGGC TTAGTTATAG GTAATTGATA ATATTGATCA TTATAGATGC 93422 .......... .......... .......... .......... .......... .......... 320 TCTTGCTAAC TGAAACATCC TTCAGGGCGT GTAAAGCATA TTTTCATGTA TTTTTTGTTG 93362 .......... .......... .......... .......... .......... .......... 320 GGTTCTGAAG AAAGTCTTCA TTTTTTATGT AAGTTTGATG CAGCTGAGTA GAATCTATAG 93302 .......... .......... .......... .......... .......... .......... 320 TGGTATTCTT GTTTCATCTG ATGTATGTTT CTAAGCTTGT TCTGGAAGTG ACATCAACCA 93242 .......... .......... .......... .......... .......... .......... 320 CTTATTAGCA TCACCATTTA CCTAGCACAT TTTTGGTTCA AGTGATAGTC CAAAGGCTAC 93182 .......... .......... .......... .......... .......... .......... 320 TTGTAAAAGA AACTGATACT CTAAAGAGAA CCAAATGTCC AACATATTTA TCATATTACT 93122 .......... .......... .......... .......... .......... .......... 320 TTTTTTTTTT TGCAATTTCT GTATGCGCGA TTAATGAAAA AAGCTATTGT GATGTTGCAT 93062 .......... .......... .......... .......... .......... .......... 320 TACTACTGCT ATATATTTTA TTAATCCTCT TCCCCCACTA AAACCAAAAG AAAGACTGTT 93002 .......... .......... .......... .......... .......... .......... 320 AGAAGTAGTG AATTCAGGCA ATTCAAGACT AGTAAACAAT GCTCTACTTA CAATTTTTTC 92942 .......... .......... .......... .......... .......... .......... 320 TTCTACTTTT CAGGTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA AACAACGTTA 92882 ||||||| |||||||||| |||||||||| |||||||||| || ||||| | .......... ...GTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA AATAACGTCA 367 GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTATGAG TTGCGCTACT 92822 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTACGAA TTGCGCTACT 427 TCAACATTGC CGAGAATGAA GCAGATGAAG AAGATTAAAC AT 92780 |||||||||| ||||||||| |||||||||| |||||||||| || TCAACATTGC TGAGAATGAA GCAGATGAAG AAGATTAAAC AT 469 hqPGS_C09HBa0278J12.1-_SGN-E276642+ (95216 94962,92928 92780) ******************************************************************************** EST sequence 248 +strand 462 n (File: SGN-E338914+) 1 CCTAATTTAA CAGAGTCACG CACTTCCATA CACTCACACT AGGCCGTGGA CGTCGAGTTT 61 CATCCTAAGA GAAATACAGA GAGTGTAAAG ATGAGCCGAG CAGCAGCAGC AGCAGTGAAG 121 GGCGGGAAGA AGAAGGGGGC AAGCTTCGTC ATTGACTGTT CGAAGCCGGT AGAAGACAGT 181 ATCATGGAGA TTGCTTCTCT TGACAAGTTC CTTCAAGAGA GGATTAAGGT TGGTGGAAAA 241 GCTGGTGCTC TTGGGGATTC CGTTACTGTT ACTCGTGACA AGAACAAGAT CACCGTCACC 301 TGCAACTCAA CTTTTTCCAA GAGGTACCTC AAATACCTTG TCAAAAAGTA CTTGAAGAAA 361 AATAACGTCA GGGATTGGCT TAGGGTGATT GCTTCCAACA AGGACAGGAA TGTTTACGAA 421 TTGCGCTACT TCAACATTGG CTGAGAATGA AGCAGATGAA GA Predicted gene structure (within gDNA segment 96637 to 92181): Exon 1 95372 95324 ( 49 n); cDNA 1 49 ( 49 n); score: 0.776 Intron 1 95323 95231 ( 93 n); Pd: 0.000 (s: 0.78), Pa: 0.992 (s: 0.54) Exon 2 95230 94962 ( 269 n); cDNA 50 323 ( 274 n); score: 0.857 Intron 2 94961 92929 (2033 n); Pd: 0.999 (s: 0.90), Pa: 0.998 (s: 0.96) Exon 3 92928 92791 ( 138 n); cDNA 324 462 ( 139 n); score: 0.946 MATCH C09HBa0278J12.1- SGN-E338914+ 0.887 456 0.987 C PGS_C09HBa0278J12.1-_SGN-E338914+ (95372 95324,95230 94962,92928 92791) Alignment (genomic DNA sequence = upper lines): CCTAATTAAA TATAATCATC CACTTCCATA CACTCGCAGT CGGCCGCCGT CGAATTTCTC 95313 ||||||| || | | ||| |||||||||| ||||| || | ||||| | CCTAATTTAA CAGAGTCACG CACTTCCATA CACTCACACT AGGCCGTGG. .......... 49 CCGTATGTAT TTTCCAACTT TTTCTCCGGC GATGAACATG AGCTTTGTGT TTGAGATCTG 95253 .......... .......... .......... .......... .......... .......... 49 ACGATTTTTG TTTTGTTTTC AGTATTTGAA TAGCAGCAGA AGAGAAAT-C A-AGAGCGTA 95195 | || | || | | |||||||| | | |||| ||| .......... .......... ..ACGTCGAG TTTCATCCTA AGAGAAATAC AGAGAGTGTA 87 AAGATGAGCC --G-AGCAGC AGCAGCAGTG AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC 95138 |||||||||| | |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGAGCC GAGCAGCAGC AGCAGCAGTG AAGGGCGGGA AGAAGAAGGG GGCAAGCTTC 147 GTCATCGACT GTTCGAAGCC AGTGGAGGAC AGTATTATGG AGATTGCTTC TCTTGACAAG 95078 ||||| |||| |||||||||| || || ||| ||||| |||| |||||||||| |||||||||| GTCATTGACT GTTCGAAGCC GGTAGAAGAC AGTATCATGG AGATTGCTTC TCTTGACAAG 207 TTCCTCCAAG AGAGAATTAA GGTTGGTGGA AAAGCTGGTG CACTTGGAGA TTCCGTTACT 95018 ||||| |||| |||| ||||| |||||||||| |||||||||| | ||||| || |||||||||| TTCCTTCAAG AGAGGATTAA GGTTGGTGGA AAAGCTGGTG CTCTTGGGGA TTCCGTTACT 267 GTCACTCGTG ATAAGAATAA AATCACCGTC ACTTGCAACT CCACTTTTTC CAAGAGGTAC 94958 || ||||||| | ||||| || ||||||||| || ||||||| | |||||||| |||||| GTTACTCGTG ACAAGAACAA GATCACCGTC ACCTGCAACT CAACTTTTTC CAAGAG.... 323 TGACTAGTAC TATATTTCCA CTCCTCATTT CGTGTAATTT GGGTTTTTGC CTGATTTTTA 94898 .......... .......... .......... .......... .......... .......... 323 ATTGGGTTTA TTTGAAAAAA TTGATCGTTG AAACTTCGTG TGGGTCGACT TTCATTGTAG 94838 .......... .......... .......... .......... .......... .......... 323 TTTGATAATG TTTACACTGA CAGATTGATA GGATTTTAGC GTAAACCTAT TCTTTTATTC 94778 .......... .......... .......... .......... .......... .......... 323 GGGATGTGCT ATGCTCTGCA AGGAGTTGTT TTGTTTGGAA TAGTGTAGTC ATTCACGCAT 94718 .......... .......... .......... .......... .......... .......... 323 TGAGCTTTGA GTCAGTTGAT AATGGGTTAA AATAGAGTTC TTTTTGCAGT TTATTTTAGT 94658 .......... .......... .......... .......... .......... .......... 323 TATCAATAGT GATGATGATT GTGTGTTTGT GTTATGTCAT TCTACTGCTT GTTTATTCAA 94598 .......... .......... .......... .......... .......... .......... 323 AATATTATCC TATTTACATT GAGAAATAAG GAGAAATAGA AGAACTAAAA CAGCAGCGTA 94538 .......... .......... .......... .......... .......... .......... 323 ATATCTTGTA GGTAACCATT TGTATCTTGA ACTAGGTATC CTAATTATCC TTGTAGCTCT 94478 .......... .......... .......... .......... .......... .......... 323 TGCTGAACTT ATGGAACAGA TAGTCTATGA GCTCTACACT TCAACGTCCA AGATTAGAAA 94418 .......... .......... .......... .......... .......... .......... 323 TCGGGGTTGG CTTTTATCGT ACTTGGATTA TTTTCACAAC TGACAGATTG AAATTAACTT 94358 .......... .......... .......... .......... .......... .......... 323 ATCATAGCCT CTTTTATTGT GGCTTGTTTC TGCTTTACCA AGAGCTCTTA TTTGGAATAG 94298 .......... .......... .......... .......... .......... .......... 323 TGCATTCATT TATATTTTAA GCTCAGAGTA GATTAACAGT GGTTTTCAAA AGAGGTCCTT 94238 .......... .......... .......... .......... .......... .......... 323 TTTGCTGTTT ATTTTAGTTT GAGTGCCCTG CACTGCAAGT CTAATAAATA AGCCCTTCTA 94178 .......... .......... .......... .......... .......... .......... 323 TTCTGGAGTT ATTACATTGA AGAGGATGAG CTTATGTCAT TCTACTTTTC GTTCATCTAA 94118 .......... .......... .......... .......... .......... .......... 323 TGCATTATCT TACTTACATT GAGAAGCAAA GAAATAACAG AAAAATTATG GTGGCGTAGT 94058 .......... .......... .......... .......... .......... .......... 323 ATCTTGTAGT TATTCGTAAA TCCAACTGTT TATCTTGTAA TTATCCGTAA ATCCAACTGT 93998 .......... .......... .......... .......... .......... .......... 323 TGGTCTTCTC ATATAGCAGG TTCAACCAGG CCCCAGTAAC CACTGTTACA TTTTTGGACT 93938 .......... .......... .......... .......... .......... .......... 323 GTTGTCTGCT CTTTAGTTAT TTAGTAAATT TTTATAAATT AGCAGACCCC TTCTTTTGCT 93878 .......... .......... .......... .......... .......... .......... 323 TGCATCTTCT TGATGCCTTC TAATGAAATC TCTTTCATCT AAAAAAGATA TTCATAACTT 93818 .......... .......... .......... .......... .......... .......... 323 GAATAGGGTA TGTGCATAAT GTTATATAAT TATAATAATC CTCACAGATC TTCCTGAATT 93758 .......... .......... .......... .......... .......... .......... 323 TATGTTCAGA TTGTCAGTGA GCATTAGCTA GATTGTTTGG CTCCTCCCAC TTCTCAGTGA 93698 .......... .......... .......... .......... .......... .......... 323 AGTAGATTCT TAAGTAGGCG GTTGTTGATG AGACCAATTA GACTGCAACC TAGCCTTTCA 93638 .......... .......... .......... .......... .......... .......... 323 CTTGTGTCCA TTAGTTTGCG TCAAGTGCAA TTTTGTTGAT TTCATCTTTT ACATCCATAA 93578 .......... .......... .......... .......... .......... .......... 323 TCACACAGAA TAGTACACTT GGATTATGTC AAATTACATG TGAAATAGGC TTGGAAGAAC 93518 .......... .......... .......... .......... .......... .......... 323 TAATATGTAT TAAGTTTGTA ACTTGAAAGA GATAGGTAAC TAACATGTAA GCAGGCTTAG 93458 .......... .......... .......... .......... .......... .......... 323 TTATAGGTAA TTGATAATAT TGATCATTAT AGATGCTCTT GCTAACTGAA ACATCCTTCA 93398 .......... .......... .......... .......... .......... .......... 323 GGGCGTGTAA AGCATATTTT CATGTATTTT TTGTTGGGTT CTGAAGAAAG TCTTCATTTT 93338 .......... .......... .......... .......... .......... .......... 323 TTATGTAAGT TTGATGCAGC TGAGTAGAAT CTATAGTGGT ATTCTTGTTT CATCTGATGT 93278 .......... .......... .......... .......... .......... .......... 323 ATGTTTCTAA GCTTGTTCTG GAAGTGACAT CAACCACTTA TTAGCATCAC CATTTACCTA 93218 .......... .......... .......... .......... .......... .......... 323 GCACATTTTT GGTTCAAGTG ATAGTCCAAA GGCTACTTGT AAAAGAAACT GATACTCTAA 93158 .......... .......... .......... .......... .......... .......... 323 AGAGAACCAA ATGTCCAACA TATTTATCAT ATTACTTTTT TTTTTTTGCA ATTTCTGTAT 93098 .......... .......... .......... .......... .......... .......... 323 GCGCGATTAA TGAAAAAAGC TATTGTGATG TTGCATTACT ACTGCTATAT ATTTTATTAA 93038 .......... .......... .......... .......... .......... .......... 323 TCCTCTTCCC CCACTAAAAC CAAAAGAAAG ACTGTTAGAA GTAGTGAATT CAGGCAATTC 92978 .......... .......... .......... .......... .......... .......... 323 AAGACTAGTA AACAATGCTC TACTTACAAT TTTTTCTTCT ACTTTTCAGG TACCTCAAAT 92918 | |||||||||| .......... .......... .......... .......... .........G TACCTCAAAT 334 ACCTTGTCAA AAAGTACTTG AAGAAAAACA ACGTTAGGGA TTGGCTTAGG GTGATTGCTT 92858 |||||||||| |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ACCTTGTCAA AAAGTACTTG AAGAAAAATA ACGTCAGGGA TTGGCTTAGG GTGATTGCTT 394 CCAACAAGGA CAGGAATGTT TATGAGTTGC GCTACTTCAA CATT-GCCGA GAATGAAGCA 92799 |||||||||| |||||||||| || || |||| |||||||||| |||| || || |||||||||| CCAACAAGGA CAGGAATGTT TACGAATTGC GCTACTTCAA CATTGGCTGA GAATGAAGCA 454 GATGAAGA 92791 |||||||| GATGAAGA 462 hqPGS_C09HBa0278J12.1-_SGN-E338914+ (95372 95324,95230 94962,92928 92791) ******************************************************************************** EST sequence 416 +strand 427 n (File: SGN-E287536+) 1 ACTGTTACTC GTGACAAGAA CAAGATCACC GTCACCTGCA ACTCAACTTT TTCCAAGAGG 61 TACCTCAAAT ACCTTGTCAA AAAGTACTTG AAGAAAAATA ACGTCAGGGA TTGGCTTAGG 121 GTGATTGCTT CCAACAAGGA CAGGAATGTT TACGAATTGC GCTACTTCAA CATTGCTGAG 181 AATGAAGCAG ATGAAGAAGA TTAAACATGA CCATTCAATG TCTCTCTTTA TCTTCTTTCT 241 TTAGTCGGCC TTCACTTTTT GATCCTTGTA TCATCACTAA TGAATCCTGT CTTCTCATTT 301 CTAGATTTTG TTTTTGCAGT TTGCTTATCA GTAAAAGAAA ACATTACATC GATACTTTGG 361 TTTGTCTATC TTTGGGGATA ATTATGAAAA TGTCAATTTA TCTGTATTGC CTTTCAAAAA 421 AAAAAAA Predicted gene structure (within gDNA segment 94100 to 89989): Exon 1 92928 92576 ( 353 n); cDNA 60 416 ( 357 n); score: 0.772 Intron 1 92575 91933 ( 643 n); Pd: 0.000 (s: 0.72), Pa: 0.977 (s: 0) Exon 2 91932 91922 ( 11 n); cDNA 417 427 ( 11 n); score: 0.727 MATCH C09HBa0278J12.1- SGN-E287536+ 0.772 364 0.852 C PGS_C09HBa0278J12.1-_SGN-E287536+ (92928 92576,91932 91922) Alignment (genomic DNA sequence = upper lines): GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAC AACGTTAGGG ATTGGCTTAG 92869 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| GTACCTCAAA TACCTTGTCA AAAAGTACTT GAAGAAAAAT AACGTCAGGG ATTGGCTTAG 119 GGTGATTGCT TCCAACAAGG ACAGGAATGT TTATGAGTTG CGCTACTTCA ACATTGCCGA 92809 |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| ||||||| || GGTGATTGCT TCCAACAAGG ACAGGAATGT TTACGAATTG CGCTACTTCA ACATTGCTGA 179 GAATGAAGCA GATGAAGAAG ATTAAACATG TCTAGTCAAT GTCCCT-TTT ATCTTC-TTA 92751 |||||||||| |||||||||| |||||||||| | | ||||| ||| || ||| |||||| || GAATGAAGCA GATGAAGAAG ATTAAACATG ACCATTCAAT GTCTCTCTTT ATCTTCTTTC 239 TTT--TGAAC CTT-A---TA TCAT-C-TGT TTGAGTTATT AATGAGCCGT ATCTTCTCAT 92699 ||| | | ||| | | | || | ||| | | | | | ||||| | | ||||||||| TTTAGTCGGC CTTCACTTTT TGATCCTTGT ATCA-TCACT AATGAATCCT GTCTTCTCAT 298 TTCCAGATTA TTGATTTT-T TGTCCCCTTA TCAGTAAAAG AAAACGTTAC TTTGATACAC 92640 ||| ||||| ||| |||| || |||| |||||||||| ||||| |||| | ||| || TTCTAGATT- TTGTTTTTGC AGTTTGCTTA TCAGTAAAAG AAAACATTAC ATCGAT--AC 355 TTTGGTTTGT TCATCTCTGG GGTCAAGTTT TTGCAAGGCA TCAATTTCTC TGTATTGCCT 92580 |||||||||| |||| ||| || || || || || ||||||| || |||||||||| TTTGGTTTGT CTATCTTTGG GGATAA--TT ATG-AAAATG TCAATTTATC TGTATTGCCT 412 TTTCCCTCTT GATGATCACA TGTAATTTAT AGAGTTTATC TTTTGTTGTT CTTGTGTCTT 92520 || TTCA...... .......... .......... .......... .......... .......... 416 TCTTTTAACC ACTGCGCCAT TGATGATTTC CTTCAATCCT TGAAAAGATC GATTGAGACT 92460 .......... .......... .......... .......... .......... .......... 416 ACCTTCATTG TCCCTTTTAA GATATCTACT TGTTAAGGGC CCAAATGAGA TTTCAATTTG 92400 .......... .......... .......... .......... .......... .......... 416 GGTGCATGGA GCAAATGATA TTCTAATTAC CAGCCCCTCC CTCTTCTTGT TTTTCTACCT 92340 .......... .......... .......... .......... .......... .......... 416 TCATTTAAGT TCTGATTAAA TTTGAAACAA TACTGAATAG TTTCACATTG GGGTAAAGCT 92280 .......... .......... .......... .......... .......... .......... 416 AGCGATGTCT GAATTACGTA AAACGTTTCT AACAAAATTG GCTCTGCATT TTCCAACAAA 92220 .......... .......... .......... .......... .......... .......... 416 GTCTACTCTT TTCTGAACGC AACTTAAATT TAAACATCTA GTTAAAATGA TCCTTGTTGA 92160 .......... .......... .......... .......... .......... .......... 416 TATGAATTGC TCTACTTTAA CATTGCTTTC AACAATGACT ACGCATTTTA AGAGCAAAAG 92100 .......... .......... .......... .......... .......... .......... 416 TCATGTGAAA CATATGTAAC CGACTTAGAG CCTTATTAAT GTTTCGTGTG ATACTTGTTA 92040 .......... .......... .......... .......... .......... .......... 416 ACTTTGCGAA ATATAGTAGG ATTACTTGAT TAGATTTTAT TATGATGCAA AAATATGAAC 91980 .......... .......... .......... .......... .......... .......... 416 TTATACCTCG TATATATATT TTATTATTTA TTTTATTTTT TTGTTAGAAA GGAGAAAA 91922 ||| | |||| .......... .......... .......... .......... .......AAA AAAAAAAA 427 hqPGS_C09HBa0278J12.1-_SGN-E287536+ (92928 92576) ******************************************************************************** EST sequence 267 +strand 655 n (File: SGN-E215051+) 1 GAGCATTAGC TAGATTGTTT GGCTCCTCCC ACTTCTCAGT GAAGTAGATT CTTAAGTAGG 61 CGGTTGTTGA TGAGACCAAT TAGACTGCAA CCTAGCCTTT CACTTGTGTC CATTAGTTTG 121 CGTCAAGTGC AATTTTGTTG ATTTCATCTT TTACATCCAT AATCACACAG AATAGTACAC 181 TTGGATTATG TCAAATTACA TGTGAAATAG GCTTGGAAGA ACTAATATGT ATTAAGTTTG 241 TAACTTGAAA GAGATAGGTA ACTAACATGT AAGCAGGCTT AGTTATAGGT AATTGATAAT 301 ATTGATCATT ATAGATGCTC TTGCTAACTG AAACATCCTT CAGGGCGTGT AAAGCATATT 361 TTCATGTATT TTTTGTTGGG TTCTGAAGAA AGTCTTCATT TTTTATGTAA GTTTGATGCA 421 GCTGAGTAGA ATCTATAGTG GTATTCTTGT TTCACCTGAT GTATGTTTCT AAGCTTGTTC 481 TGGAAGTGAC ATCAACCACT TATTAGCATC ACCATTTACC TAGCACATTT TTGGTTCAAG 541 TGATAGTCCA AAGGCTACTT GTAAAAGAAA CTGATACTCT AAAGAGAACA AATGTCCAAC 601 ATATTTATCA TATTACTTTT TTTTTTTTTT GCAATTTCTG TATGCGCGAT TAATG Predicted gene structure (within gDNA segment 94339 to 92476): Exon 1 93739 93086 ( 654 n); cDNA 1 655 ( 655 n); score: 0.989 MATCH C09HBa0278J12.1- SGN-E215051+ 0.989 654 0.998 C PGS_C09HBa0278J12.1-_SGN-E215051+ (93739 93086) Alignment (genomic DNA sequence = upper lines): GAGCATTAGC TAGATTGTTT GGCTCCTCCC ACTTCTCAGT GAAGTAGATT CTTAAGTAGG 93680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCATTAGC TAGATTGTTT GGCTCCTCCC ACTTCTCAGT GAAGTAGATT CTTAAGTAGG 60 CGGTTGTTGA TGAGACCAAT TAGACTGCAA CCTAGCCTTT CACTTGTGTC CATTAGTTTG 93620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTGTTGA TGAGACCAAT TAGACTGCAA CCTAGCCTTT CACTTGTGTC CATTAGTTTG 120 CGTCAAGTGC AATTTTGTTG ATTTCATCTT TTACATCCAT AATCACACAG AATAGTACAC 93560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCAAGTGC AATTTTGTTG ATTTCATCTT TTACATCCAT AATCACACAG AATAGTACAC 180 TTGGATTATG TCAAATTACA TGTGAAATAG GCTTGGAAGA ACTAATATGT ATTAAGTTTG 93500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATTATG TCAAATTACA TGTGAAATAG GCTTGGAAGA ACTAATATGT ATTAAGTTTG 240 TAACTTGAAA GAGATAGGTA ACTAACATGT AAGCAGGCTT AGTTATAGGT AATTGATAAT 93440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTGAAA GAGATAGGTA ACTAACATGT AAGCAGGCTT AGTTATAGGT AATTGATAAT 300 ATTGATCATT ATAGATGCTC TTGCTAACTG AAACATCCTT CAGGGCGTGT AAAGCATATT 93380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATCATT ATAGATGCTC TTGCTAACTG AAACATCCTT CAGGGCGTGT AAAGCATATT 360 TTCATGTATT TTTTGTTGGG TTCTGAAGAA AGTCTTCATT TTTTATGTAA GTTTGATGCA 93320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGTATT TTTTGTTGGG TTCTGAAGAA AGTCTTCATT TTTTATGTAA GTTTGATGCA 420 GCTGAGTAGA ATCTATAGTG GTATTCTTGT TTCATCTGAT GTATGTTTCT AAGCTTGTTC 93260 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GCTGAGTAGA ATCTATAGTG GTATTCTTGT TTCACCTGAT GTATGTTTCT AAGCTTGTTC 480 TGGAAGTGAC ATCAACCACT TATTAGCATC ACCATTTACC TAGCACATTT TTGGTTCAAG 93200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGTGAC ATCAACCACT TATTAGCATC ACCATTTACC TAGCACATTT TTGGTTCAAG 540 TGATAGTCCA AAGGCTACTT GTAAAAGAAA CTGATACTCT AAAGAGAACC AAATGTCCAA 93140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGATAGTCCA AAGGCTACTT GTAAAAGAAA CTGATACTCT AAAGAGAA-C AAATGTCCAA 599 CATATTTATC ATATTAC--T TTTTTTTTTT TGCAATTTCT GTATGCGCGA TTAATG 93086 |||||||||| ||||||| | |||||||||| |||||||||| |||||||||| |||||| CATATTTATC ATATTACTTT TTTTTTTTTT TGCAATTTCT GTATGCGCGA TTAATG 655 hqPGS_C09HBa0278J12.1-_SGN-E215051+ (93739 93086) ******************************************************************************** EST sequence 32 +strand 469 n (File: SGN-E200441+) 1 GCACGAGTCT CCCTGTTTTC CAAGAATTCA ATATCTTACT ATACTTTTAT CGTATCAATA 61 ATCACTTTTT CTCTGTAAAA ATAATTGCAT CTATAAGGCC ATAATACACA GATCTGTTAC 121 TTACCCATGA ATGTTGAGTC ACATTTCTGA GTTGGGATTT GGTTATTTTT TCTGAAAATA 181 TACAATGGGT GTTGAATATC ATGAGGTATT TATAAGGAAT TCAAGAGGTG TACAACTCTT 241 CACTTGTAGA TGGTTGCCCT TTTCTTCTCC AAAAGCTCTT GTTTTCCTTT GCCATGGTTA 301 TGGCATGGAA TGCAGTACAT TCATGAGAGG GTGTTGGGAC AAAGCTGGCA GATAATGGAT 361 ATGCGGCGTT TGGAATAGAT TATGAAGGTC ATGGACGATC AGCGGGTGCG CGCTGTTACA 421 TCAAAAAGTT TGACAACATT GTCAATGACT GCAGCGAGTT TTTCAAGTC Predicted gene structure (within gDNA segment 99435 to 102418): Exon 1 100105 100302 ( 198 n); cDNA 8 205 ( 198 n); score: 1.000 Intron 1 100303 100424 ( 122 n); Pd: 0.490 (s: 1.00), Pa: 0.818 (s: 1.00) Exon 2 100425 100515 ( 91 n); cDNA 206 296 ( 91 n); score: 1.000 Intron 2 100516 100593 ( 78 n); Pd: 0.823 (s: 1.00), Pa: 0.999 (s: 0) Exon 3 100594 100626 ( 33 n); cDNA 297 329 ( 33 n); score: 0.970 MATCH C09HBa0278J12.1+ SGN-E200441+ 1.000 322 0.687 C PGS_C09HBa0278J12.1+_SGN-E200441+ (100105 100302,100425 100515,100594 100626) Alignment (genomic DNA sequence = upper lines): TCTCCCTGTT TTCCAAGAAT TCAATATCTT ACTATACTTT TATCGTATCA ATAATCACTT 100164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCCTGTT TTCCAAGAAT TCAATATCTT ACTATACTTT TATCGTATCA ATAATCACTT 67 TTTCTCTGTA AAAATAATTG CATCTATAAG GCCATAATAC ACAGATCTGT TACTTACCCA 100224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTGTA AAAATAATTG CATCTATAAG GCCATAATAC ACAGATCTGT TACTTACCCA 127 TGAATGTTGA GTCACATTTC TGAGTTGGGA TTTGGTTATT TTTTCTGAAA ATATACAATG 100284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATGTTGA GTCACATTTC TGAGTTGGGA TTTGGTTATT TTTTCTGAAA ATATACAATG 187 GGTGTTGAAT ATCATGAGGT GGGTTTTTGT TCTTTTTGCT TTTTTTCTTC AATGAGCATG 100344 |||||||||| |||||||| GGTGTTGAAT ATCATGAG.. .......... .......... .......... .......... 205 CATATTTTTC TTCTTTACTT TGTACAATAT GGTGTTTTTC TTAATAAAAA TTGTGTCTTT 100404 .......... .......... .......... .......... .......... .......... 205 ACTTACATCA ATGGCATTAG GTATTTATAA GGAATTCAAG AGGTGTACAA CTCTTCACTT 100464 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTATTTATAA GGAATTCAAG AGGTGTACAA CTCTTCACTT 245 GTAGATGGTT GCCCTTTTCT TCTCCAAAAG CTCTTGTTTT CCTTTGCCAT GGTTTGTATT 100524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTAGATGGTT GCCCTTTTCT TCTCCAAAAG CTCTTGTTTT CCTTTGCCAT G......... 296 TTTTATTTTT TTTGGTTTTT GTTGAAATTT GATTTAACAA ATTGATTAAT GATGTCGTTG 100584 .......... .......... .......... .......... .......... .......... 296 TTGTTGTAGG TTATGGCATG GAATGCAGTA GATTCATGAG AG 100626 | |||||||||| |||||||||| ||||||||| || .........G TTATGGCATG GAATGCAGTA CATTCATGAG AG 329 hqPGS_C09HBa0278J12.1+_SGN-E200441+ (100105 100302,100425 100515,100594 100626) ******************************************************************************** EST sequence 103 +strand 520 n (File: SGN-E267197+) 1 CTTACTATAC TTTTATCGTA TCAATAATCA CTTTTTCTCT GTAAAAATAA TTGCATCTAT 61 AAGGCCATAA TACACAGATC TGTTACTTAC CCATGAATGT TGAGTCACAT TTCTGAGTTG 121 GGATTTGGTT ATTTTTTCTG AAAATATACA ATGGGTGTTG AATATCATGA GGTATTTATA 181 AGGAATTCAA GAGGTGTACA ACTCTTCACT TGTAGATGGT TGCCCTTTTC TTCTCCAAAA 241 GCTCTTGTTT TCCTTTGCCA TGGTTATGGC ATGGAATGCA GTAGATTCAT GAGAGGTGTT 301 GGGACAAAGC TGGCAGATAA TGGATATGCG GTGTTTGGAA TAGATTATGA AGGTCATGGA 361 CGATCAGCGG GTGCGCGCTG TTACATCAAA AAGTTTGACA ACATTGTCAA TGACTGCAGC 421 GAGTTTTTCA AGTCAGTTTG TGCGCAGGAG GAGTATAGAG AGAAAAAACG GTTTCTGTAT 481 GGGGAGTCGA TGGGAGGGGC CGTGGCTCTT TTAACACACA Predicted gene structure (within gDNA segment 99532 to 102418): Exon 1 100132 100302 ( 171 n); cDNA 1 171 ( 171 n); score: 1.000 Intron 1 100303 100424 ( 122 n); Pd: 0.490 (s: 1.00), Pa: 0.818 (s: 1.00) Exon 2 100425 100515 ( 91 n); cDNA 172 262 ( 91 n); score: 1.000 Intron 2 100516 100593 ( 78 n); Pd: 0.823 (s: 1.00), Pa: 0.999 (s: 0) Exon 3 100594 100626 ( 33 n); cDNA 263 295 ( 33 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E267197+ 1.000 295 0.567 C PGS_C09HBa0278J12.1+_SGN-E267197+ (100132 100302,100425 100515,100594 100626) Alignment (genomic DNA sequence = upper lines): CTTACTATAC TTTTATCGTA TCAATAATCA CTTTTTCTCT GTAAAAATAA TTGCATCTAT 100191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACTATAC TTTTATCGTA TCAATAATCA CTTTTTCTCT GTAAAAATAA TTGCATCTAT 60 AAGGCCATAA TACACAGATC TGTTACTTAC CCATGAATGT TGAGTCACAT TTCTGAGTTG 100251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCCATAA TACACAGATC TGTTACTTAC CCATGAATGT TGAGTCACAT TTCTGAGTTG 120 GGATTTGGTT ATTTTTTCTG AAAATATACA ATGGGTGTTG AATATCATGA GGTGGGTTTT 100311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GGATTTGGTT ATTTTTTCTG AAAATATACA ATGGGTGTTG AATATCATGA G......... 171 TGTTCTTTTT GCTTTTTTTC TTCAATGAGC ATGCATATTT TTCTTCTTTA CTTTGTACAA 100371 .......... .......... .......... .......... .......... .......... 171 TATGGTGTTT TTCTTAATAA AAATTGTGTC TTTACTTACA TCAATGGCAT TAGGTATTTA 100431 ||||||| .......... .......... .......... .......... .......... ...GTATTTA 178 TAAGGAATTC AAGAGGTGTA CAACTCTTCA CTTGTAGATG GTTGCCCTTT TCTTCTCCAA 100491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGAATTC AAGAGGTGTA CAACTCTTCA CTTGTAGATG GTTGCCCTTT TCTTCTCCAA 238 AAGCTCTTGT TTTCCTTTGC CATGGTTTGT ATTTTTTATT TTTTTTGGTT TTTGTTGAAA 100551 |||||||||| |||||||||| |||| AAGCTCTTGT TTTCCTTTGC CATG...... .......... .......... .......... 262 TTTGATTTAA CAAATTGATT AATGATGTCG TTGTTGTTGT AGGTTATGGC ATGGAATGCA 100611 |||||||| |||||||||| .......... .......... .......... .......... ..GTTATGGC ATGGAATGCA 280 GTAGATTCAT GAGAG 100626 |||||||||| ||||| GTAGATTCAT GAGAG 295 hqPGS_C09HBa0278J12.1+_SGN-E267197+ (100132 100302,100425 100515,100594 100626) ******************************************************************************** EST sequence 84 +strand 407 n (File: SGN-E265486+) 1 TTATAAGGAA TTCAAGAGGT GTACAACTCT TCACTTGTAG ATGGTTGCCC TTTTCTTCTC 61 CAAAAGCTCT TGTTTTCCTT TGCCATGGTT ATGGCATGGA ATGCAGTAGA TTCATGAGAG 121 GTGTTGGGAC AAAGCTGGCA GATAATGGAT ATGCGGTGTT TGGAATAGAT TATGAAGGTC 181 ATGGACGATC AGCGGGTGCG CGCTGTTACA TCAAAAAGTT TGACAACATT GTCAATGACT 241 GCAGCGAGTT TTCAAGTCAG TTTGTGCGCA CGAGGAGTAT ATAGAGAAAA AACGGTTTCT 301 GTATGGGGAG TCGATGGGAG GGGCCGTGGC TCTTTTAACA CACAAGAAGG ATCCTTCCTT 361 TTGGCATGGT GCTCTTCTGG TTGCACCTAT GTGTAAGATA TCTGAGA Predicted gene structure (within gDNA segment 99829 to 102418): Exon 1 100429 100515 ( 87 n); cDNA 1 87 ( 87 n); score: 1.000 Intron 1 100516 100593 ( 78 n); Pd: 0.823 (s: 1.00), Pa: 0.999 (s: 0) Exon 2 100594 100626 ( 33 n); cDNA 88 120 ( 33 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E265486+ 1.000 120 0.295 C PGS_C09HBa0278J12.1+_SGN-E265486+ (100429 100515,100594 100626) Alignment (genomic DNA sequence = upper lines): TTATAAGGAA TTCAAGAGGT GTACAACTCT TCACTTGTAG ATGGTTGCCC TTTTCTTCTC 100488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAAGGAA TTCAAGAGGT GTACAACTCT TCACTTGTAG ATGGTTGCCC TTTTCTTCTC 60 CAAAAGCTCT TGTTTTCCTT TGCCATGGTT TGTATTTTTT ATTTTTTTTG GTTTTTGTTG 100548 |||||||||| |||||||||| ||||||| CAAAAGCTCT TGTTTTCCTT TGCCATG... .......... .......... .......... 87 AAATTTGATT TAACAAATTG ATTAATGATG TCGTTGTTGT TGTAGGTTAT GGCATGGAAT 100608 ||||| |||||||||| .......... .......... .......... .......... .....GTTAT GGCATGGAAT 102 GCAGTAGATT CATGAGAG 100626 |||||||||| |||||||| GCAGTAGATT CATGAGAG 120 hqPGS_C09HBa0278J12.1+_SGN-E265486+ (100429 100515,100594 100626) ******************************************************************************** EST sequence 86 +strand 426 n (File: SGN-E243373+) 1 TTTCAACTAC AAATCTATTT GAGTATTGAG TTATTTTTAC TTCATTCTGA ATTAGAGATT 61 TCGAATTTGA GTCTTTTGAA TATAAAGAGT TTTTGGATCC AAATCTTTTT GAAAATAAAA 121 TATTTCGAGT TTAAATCTTT GTGCGTATAC AGTAATTTTT ACTTTATTCT AAATTAGAAA 181 TTTTAAATTT AAATTTTTTA GTACAAAAAA AAATTAAATT GCAAATTTTA ATTTAATCAA 241 ACTTCAATAT AAATATAAGG TTAAAAATCC CCGAATACAC TTCTCCTCAT CATATCTTAT 301 ATATTTATCT ATTTATATCT TTCTGTATAT ATTCCAACTT CTCAGGTCCA CTTTATCCCT 361 CTCCCTGTTT TCCAAGAATT CAATATCTTA CTATACTTTT ATCGTATCAA TAATCACTTT 421 TTCTCT Predicted gene structure (within gDNA segment 99146 to 100781): Exon 1 99746 100171 ( 426 n); cDNA 1 426 ( 426 n); score: 1.000 MATCH C09HBa0278J12.1+ SGN-E243373+ 1.000 426 1.000 C PGS_C09HBa0278J12.1+_SGN-E243373+ (99746 100171) Alignment (genomic DNA sequence = upper lines): TTTCAACTAC AAATCTATTT GAGTATTGAG TTATTTTTAC TTCATTCTGA ATTAGAGATT 99805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAACTAC AAATCTATTT GAGTATTGAG TTATTTTTAC TTCATTCTGA ATTAGAGATT 60 TCGAATTTGA GTCTTTTGAA TATAAAGAGT TTTTGGATCC AAATCTTTTT GAAAATAAAA 99865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATTTGA GTCTTTTGAA TATAAAGAGT TTTTGGATCC AAATCTTTTT GAAAATAAAA 120 TATTTCGAGT TTAAATCTTT GTGCGTATAC AGTAATTTTT ACTTTATTCT AAATTAGAAA 99925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTCGAGT TTAAATCTTT GTGCGTATAC AGTAATTTTT ACTTTATTCT AAATTAGAAA 180 TTTTAAATTT AAATTTTTTA GTACAAAAAA AAATTAAATT GCAAATTTTA ATTTAATCAA 99985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAAATTT AAATTTTTTA GTACAAAAAA AAATTAAATT GCAAATTTTA ATTTAATCAA 240 ACTTCAATAT AAATATAAGG TTAAAAATCC CCGAATACAC TTCTCCTCAT CATATCTTAT 100045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCAATAT AAATATAAGG TTAAAAATCC CCGAATACAC TTCTCCTCAT CATATCTTAT 300 ATATTTATCT ATTTATATCT TTCTGTATAT ATTCCAACTT CTCAGGTCCA CTTTATCCCT 100105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTATCT ATTTATATCT TTCTGTATAT ATTCCAACTT CTCAGGTCCA CTTTATCCCT 360 CTCCCTGTTT TCCAAGAATT CAATATCTTA CTATACTTTT ATCGTATCAA TAATCACTTT 100165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCCTGTTT TCCAAGAATT CAATATCTTA CTATACTTTT ATCGTATCAA TAATCACTTT 420 TTCTCT 100171 |||||| TTCTCT 426 hqPGS_C09HBa0278J12.1+_SGN-E243373+ (99746 100171) ******************************************************************************** EST sequence 26 +strand 482 n (File: SGN-E537921+) 1 GCCAACTGGC TTGCTTGAGA TTGAAGTGGA GTTTCATGTT AGCTATCTTG GCAGTATGTG 61 CATTATGTTT ATCTGGTTGT GGGATATTAT TATACAAGAA TATCTTTTTT ATAGGGCACA 121 ATTATTGGTG ATATATAATA ATGCAATTGT TAGGAGCTAG TAGTTAAAAA TGCAACGAAA 181 AATGGTTCTC AAATTGAATG CCAGACTGAA AACTCACCTA ACATACTGAT CCTCTCATAC 241 TGAAGGTACT ATAGATTTGC TGAAACAAAG TAATTTTTAC CCTTGAATAA CATCCTTATA 301 TGGTTTACAG CTGCATGATT AGTCTGTTTC TTGTCCTTTT TTGGTTAATT TGCTAATTAA 361 CAGCTATGTT GGAACTTCAT TGTTTGCCTA CTAAAATAAG GAGGATTAAT GGTTTGCTGG 421 TAGGTTGGTT GACTATTGAG AAACATAATA NAATTAAAAG TCCTATCTTG GTAGTTTGAT 481 AG Predicted gene structure (within gDNA segment 100914 to 102418): Exon 1 101514 101995 ( 482 n); cDNA 1 482 ( 482 n); score: 0.998 MATCH C09HBa0278J12.1+ SGN-E537921+ 0.998 482 1.000 C PGS_C09HBa0278J12.1+_SGN-E537921+ (101514 101995) Alignment (genomic DNA sequence = upper lines): GCCAACTGGC TTGCTTGAGA TTGAAGTGGA GTTTCATGTT AGCTATCTTG GCAGTATGTG 101573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAACTGGC TTGCTTGAGA TTGAAGTGGA GTTTCATGTT AGCTATCTTG GCAGTATGTG 60 CATTATGTTT ATCTGGTTGT GGGATATTAT TATACAAGAA TATCTTTTTT ATAGGGCACA 101633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTATGTTT ATCTGGTTGT GGGATATTAT TATACAAGAA TATCTTTTTT ATAGGGCACA 120 ATTATTGGTG ATATATAATA ATGCAATTGT TAGGAGCTAG TAGTTAAAAA TGCAACGAAA 101693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGTG ATATATAATA ATGCAATTGT TAGGAGCTAG TAGTTAAAAA TGCAACGAAA 180 AATGGTTCTC AAATTGAATG CCAGACTGAA AACTCACCTA ACATACTGAT CCTCTCATAC 101753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTTCTC AAATTGAATG CCAGACTGAA AACTCACCTA ACATACTGAT CCTCTCATAC 240 TGAAGGTACT ATAGATTTGC TGAAACAAAG TAATTTTTAC CCTTGAATAA CATCCTTATA 101813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTACT ATAGATTTGC TGAAACAAAG TAATTTTTAC CCTTGAATAA CATCCTTATA 300 TGGTTTACAG CTGCATGATT AGTCTGTTTC TTGTCCTTTT TTGGTTAATT TGCTAATTAA 101873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTACAG CTGCATGATT AGTCTGTTTC TTGTCCTTTT TTGGTTAATT TGCTAATTAA 360 CAGCTATGTT GGAACTTCAT TGTTTGCCTA CTAAAATAAG GAGGATTAAT GGTTTGCTGG 101933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTATGTT GGAACTTCAT TGTTTGCCTA CTAAAATAAG GAGGATTAAT GGTTTGCTGG 420 TAGGTTGGTT GACTATTGAG AAACATAATA AAATTAAAAG TCCTATCTTG GTAGTTTGAT 101993 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGGTTGGTT GACTATTGAG AAACATAATA NAATTAAAAG TCCTATCTTG GTAGTTTGAT 480 AG 101995 || AG 482 hqPGS_C09HBa0278J12.1+_SGN-E537921+ (101514 101995) ******************************************************************************** EST sequence 69 +strand 566 n (File: SGN-E265769+) 1 CCAACTGGCT TGCTTGAGAT TGAAGTGGAG TTTCATGTTA GCTATCTTGG CAGTATGTGC 61 ATTATGTTTA TCTGGTTGTG GGATATTATT ATACAAGAAT ATCTTTTTTA TAGGGCACAA 121 TTATTGGTGA TATATAATAA TGCAATTGTT AGGAGCTAGT AGTTAAAAAT GCAACGAAAA 181 ATGGTTCTCA AATTGAATGC CAGACTGAAA ACTCACCTAA CATACTGATC CTCTCATACT 241 GAAGGTACTA TAGATTTGCT GAAACAAAGT AATTTTTACC CTTGAATAAC ATCCTTATAT 301 GGTTTACAGC TGCATGATTA GTCTGTTTCT TGTCCTTTTT TGGTTAATTT GCTAATTAAC 361 AGCTATGTTG GAACTTCATT GTTTGCCTAC TAAAATAACG AGGATTAATG GTTTGCTGGT 421 AGGTTGGTTG ACTATTGAGA AACATAATAA AATTAAAAGT CCTATCTTGG TAGTTTGATA 481 GATTAATTAA GTTAGCAAAT TAGTTGGGCC CTATAAGTAA CCTCAATTAA AGATTGCTTC 541 ACACACCAAA ATTTGTGGGA CACTTT Predicted gene structure (within gDNA segment 100915 to 102418): Exon 1 101515 102080 ( 566 n); cDNA 1 566 ( 566 n); score: 0.996 MATCH C09HBa0278J12.1+ SGN-E265769+ 0.996 566 1.000 C PGS_C09HBa0278J12.1+_SGN-E265769+ (101515 102080) Alignment (genomic DNA sequence = upper lines): CCAACTGGCT TGCTTGAGAT TGAAGTGGAG TTTCATGTTA GCTATCTTGG CAGTATGTGC 101574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACTGGCT TGCTTGAGAT TGAAGTGGAG TTTCATGTTA GCTATCTTGG CAGTATGTGC 60 ATTATGTTTA TCTGGTTGTG GGATATTATT ATACAAGAAT ATCTTTTTTA TAGGGCACAA 101634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGTTTA TCTGGTTGTG GGATATTATT ATACAAGAAT ATCTTTTTTA TAGGGCACAA 120 TTATTGGTGA TATATAATAA TGCAATTGTT AGGAGCTAGT AGTTAAAAAT GCAACGAAAA 101694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGTGA TATATAATAA TGCAATTGTT AGGAGCTAGT AGTTAAAAAT GCAACGAAAA 180 ATGGTTCTCA AATTGAATGC CAGACTGAAA ACTCACCTAA CATACTGATC CTCTCATACT 101754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTTCTCA AATTGAATGC CAGACTGAAA ACTCACCTAA CATACTGATC CTCTCATACT 240 GAAGGTACTA TAGATTTGCT GAAACAAAGT AATTTTTACC CTTGAATAAC ATCCTTATAT 101814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTACTA TAGATTTGCT GAAACAAAGT AATTTTTACC CTTGAATAAC ATCCTTATAT 300 GGTTTACAGC TGCATGATTA GTCTGTTTCT TGTCCTTTTT TGGTTAATTT GCTAATTAAC 101874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTACAGC TGCATGATTA GTCTGTTTCT TGTCCTTTTT TGGTTAATTT GCTAATTAAC 360 AGCTATGTTG GAACTTCATT GTTTGCCTAC TAAAATAAGG AGGATTAATG GTTTGCTGGT 101934 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AGCTATGTTG GAACTTCATT GTTTGCCTAC TAAAATAACG AGGATTAATG GTTTGCTGGT 420 AGGTTGGTTG ACTATTGAGA AACATAATAA AATTAAAAGT CCTATCTTGG TAGTTTGATA 101994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTGGTTG ACTATTGAGA AACATAATAA AATTAAAAGT CCTATCTTGG TAGTTTGATA 480 GATTAATTAG GTTAGCAAAT TAGTTGGGCC CTATAAGTAA CCTCAATTAA AGATTGCTTC 102054 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAATTAA GTTAGCAAAT TAGTTGGGCC CTATAAGTAA CCTCAATTAA AGATTGCTTC 540 ACACACCAAA ATTTGTGGGA CACTTT 102080 |||||||||| |||||||||| |||||| ACACACCAAA ATTTGTGGGA CACTTT 566 hqPGS_C09HBa0278J12.1+_SGN-E265769+ (101515 102080) Total number of EST alignments reported: 450 ________________________________________________________________________________ Predicted gene locations (19) in segment 1 to 102418: PGL 1 (- strand): 16680 7462 AGS-1 (16680 16653,12376 12076,12045 11404,11017 10523,7563 7462) SCR (e 0.750 d 0.669 a 0.000,e 0.566 d 0.000 a 0.000,e 0.814 d 0.000 a 0.983,e 1.000 d 0.993 a 0.985,e 0.990) Exon 1 16680 16653 ( 28 n); score: 0.750 Intron 1 16652 12377 (4276 n); Pd: 0.669 Pa: 0.000 Exon 2 12376 12076 ( 301 n); score: 0.566 Intron 2 12075 12046 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 3 12045 11404 ( 642 n); score: 0.814 Intron 3 11403 11018 ( 386 n); Pd: 0.000 Pa: 0.983 Exon 4 11017 10523 ( 495 n); score: 1.000 Intron 4 10522 7564 (2959 n); Pd: 0.993 Pa: 0.985 Exon 5 7563 7462 ( 102 n); score: 0.990 PGS (11007 10523,7563 7462) SGN-E292436+ PGS (12035 11404,11017 10997) SGN-E546506- PGS (11662 11403) SGN-E336814+ PGS (11661 11403) SGN-E373117+ PGS (11661 11403) SGN-E373116- PGS (11615 11403) SGN-E298638+ PGS (12048 11570) SGN-E246710+ PGS (12028 11722) SGN-E357033- PGS (16680 16653,12376 12076,12045 11726) SGN-E349977+ PGS (12049 11813) SGN-E391780+ 3-phase translation of AGS-1 (-strand): . . . : . . . 16680 ATCCTCTTTGGTGTAGTTATATAATCAG : AATGATGAGGCCTTGGTATAAAAGAAGGCGTG I L F G V V I - S : E - - G L G I K E G V S S L V - L Y N Q : N D E A L V - K K A - P L W C S Y I I R : M M R P W Y K R R R . . . . . . 12344 ATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGAT M N - N N E I D D V L V R K K A - - I D - T K I M R L M M S W - E R R L D E L I D E L K - - D - - C L G K K E G L M N - . . . . . . 12284 AGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGATTTAGGGGATCGGGTGT R R R L G D R V S R T D T - I - G I G C E G D - G I G C Q E Q T R R F R G S G V - K E I R G S G V K N R H V D L G D R V . . . . . . 12224 CACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGG H E P T R R F R G S G V T N R H V D L G T N R H V D L G D R V S R T D T - I - G S R T D T - I - G I G C H E P T R R F R . . . . . . 12164 GATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGT D R V S R T D T - I - G I G C H E S T R I G C H E P T R R F R G S G V T N R H V G S G V T N R H V D L G D R V S R I D T . . . : . . . 12104 AGATTTAGGGGATCGGGTGTCACGAACCG : GTTCCGACACATAGTAGTAGGGGATCGGAGT R F R G S G V T N R : F R H I V V G D R S D L G D R V S R T : G S D T - - - G I G V - I - G I G C H E P : V P T H S S R G S E . . . . . . 12014 GTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACA V T Y R H K R I N E Y E G A E C H V L T S R T D T R G L M N M R E R S V T Y - H C H V P T Q E D - - I - G S G V S R T D . . . . . . 11954 CAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACAT Q E K - R - - I L K D V N I L N L N E H K R N K D N E S - K M L I Y L I - M N I T R E I K I M N L E R C - Y T - S K - T . . . . . . 11894 AATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATT N F Q M S M I L R L E S S C V N L T V I I S K - V - Y - G L S P H V - T - R - L - F P N E Y D I E A - V L M C E L D G N . . . . . . 11834 GTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATAT V N D I V L A V A T C - V S - L I L - Y L M I - Y L L L L H V E Y H S - F Y D I C - - Y S T C C C Y M L S I I V D F M I . . . . . . 11774 TACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTG Y L V Y I D F Y F E L A D D I Y S V P V T W Y I L I S I L S W P M I S T Q Y P C L L G I Y - F L F - V G R - Y L L S T R . . . . . . 11714 TTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACG F C T D S Y F Y V F F L F N C R V Q Q T F V L T P T F M F S S C L I V E C S K R V L Y - L L L L C F L L V - L - S A A N . . . . . . 11654 TGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATATCAGGG C R H L R L N S N S S Q S S V L R I S G A V I F D S T V T L A S L Q Y S G Y Q G V P S S S T Q Q - L - P V F S T P D I R . . . . . . 11594 TGAGCTAATGCTTCTAGTTTGGACTGGATCTTCCTTTTCATGTCTTGATGCCTTGAAGTT - A N A S S L D W I F L F M S - C L E V E L M L L V W T G S S F S C L D A L K F V S - C F - F G L D L P F H V L M P - S . . . . . . 11534 CCGGCATGGACTAACTTTTATGTATTTTTAGGTTCTTAGAAACTCTTAGATTTAGTAATT P A W T N F Y V F L G S - K L L D L V I R H G L T F M Y F - V L R N S - I - - F S G M D - L L C I F R F L E T L R F S N . . . . . . 11474 TGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATT - S R C S C D D D F Q I L G N N S Y - I E V D V L V M M T S R F W E I I V I E L L K - M F L - - - L P D F G K - - L L N . . : . . . . 11414 GGTTTTTATTA : GGGAAAGAGTAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACA G F Y - : G K S K K K N R G K W R K Y S T V F I : R E R V K K K T E E N G E N T A Q W F L L : G K E - K K K Q R K M E K I Q H . . . . . . 10968 AAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAG K L S P L M E S K C T - L K S V K V Q Q N C L R - W N Q N A R S - N R - R S S S K T V S A N G I K M H V A E I G E G P A . . . . . . 10908 TTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACT F Y F Y M A S L S Y G I H G A T N C F T S I S T W L P - V M V F M A P P I A L L V L F L H G F P E L W Y S W R H Q L L Y . . . . . . 10848 TTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAA F Q T K V T E L L R L I F V V T E T L K F K Q R L Q S Y C A - S S W L R R H - N F S N K G Y R A I A P D L R G Y G D T E . . . . . . 10788 TTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGT F H R K S V V I L L F T L L V I - F L C S I G N Q - L Y C F S H C W - F D F S V I P S E I S S Y T A F H I V G D L I S L . . . . . . 10728 TAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTG - I F W I - K K C S - L G M I G V L - L R Y S G S R K S V L N W A - L G C S N C L D I L D L E K V F L I G H D W G A L I . . . . . . 10668 CTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTG L G F S V C F V L I G L K L W - I - V V L V F L F V S S - S D - S F G E S E L - A W F F C L F R P D R I K A L V N L S C . . . . . . 10608 AGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTG S Y G P E I R C E N R L I A - G N C L V V T A Q K S V A K T D - L L E G I A W - E L R P R N P L R K P I D C L R E L L G . . . : . . . 10548 ATGACTATTACATGTGCAGATTTCAG : AAACTGGGAGCTCACAGCCCTATTTAGTGGATGC M T I T C A D F R : N W E L T A L F S G C - L L H V Q I S : E T G S S Q P Y L V D A D D Y Y M C R F Q : K L G A H S P I - W M . . . . . . 7529 AAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCT K I Q V P T K F V V G E L D L T Y N I P K F K S Q L S L W W V S W T - H I I F L Q N S S P N - V C G G - V G L D I - Y S . 7469 GGAATCAA G I E S W N Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-1_AGS-1_PPS_1 (11005 10523,7563 7537) (frame '0'; 507 bp, 169 residues) 1 KKKQRKMEKI QHKTVSANGI KMHVAEIGEG PAVLFLHGFP ELWYSWRHQL LYFSNKGYRA 61 IAPDLRGYGD TEIPSEISSY TAFHIVGDLI SLLDILDLEK VFLIGHDWGA LIAWFFCLFR 121 PDRIKALVNL SCELRPRNPL RKPIDCLREL LGDDYYMCRF QKLGAHSPI- >C09HBa0278J12.1-_PGL-1_AGS-1_PPS_2 (11785 11504) (frame '2'; 279 bp, 93 residues) 1 FYDITWYILI SILSWPMIST QYPCFVLTPT FMFSSCLIVE CSKRAVIFDS TVTLASLQYS 61 GYQGELMLLV WTGSSFSCLD ALKFRHGLTF MYF- AGS-2 (12920 12327,12241 12036,11954 11270) SCR (e 0.763 d 0.000 a 0.000,e 0.888 d 0.000 a 0.000,e 0.845) Exon 1 12920 12327 ( 594 n); score: 0.763 Intron 1 12326 12242 ( 85 n); Pd: 0.000 Pa: 0.000 Exon 2 12241 12036 ( 206 n); score: 0.888 Intron 2 12035 11955 ( 81 n); Pd: 0.000 Pa: 0.000 Exon 3 11954 11270 ( 685 n); score: 0.845 PGS (11744 11270) SGN-E351546+ PGS (11744 11270) SGN-E356206+ PGS (11744 11270) SGN-E356696+ PGS (11667 11274) SGN-E542084- PGS (11663 11275) SGN-E392027- PGS (12381 12327,12241 12036,11954 11528) SGN-E241789- PGS (12687 12317) SGN-E578076+ PGS (12872 12383) SGN-E546548+ PGS (12920 12496) SGN-E349296+ PGS (12920 12630) SGN-E550322- PGS (12920 12639) SGN-E550127+ PGS (12920 12639) SGN-E550140+ PGS (12920 12639) SGN-E389553+ PGS (12920 12639) SGN-E550212- PGS (12920 12639) SGN-E550065- PGS (12920 12639) SGN-E550201- PGS (12920 12639) SGN-E550207- PGS (12920 12639) SGN-E550335- PGS (12920 12639) SGN-E390013- PGS (12920 12639) SGN-E389834- PGS (12920 12639) SGN-E550484- PGS (12920 12639) SGN-E550211- PGS (12920 12639) SGN-E550464- PGS (12920 12639) SGN-E549941- PGS (12920 12639) SGN-E550025- PGS (12920 12639) SGN-E396039- PGS (12920 12639) SGN-E396054- PGS (12920 12639) SGN-E396056- PGS (12920 12639) SGN-E396058- PGS (12920 12639) SGN-E396070- PGS (12920 12640) SGN-E231589- PGS (12920 12640) SGN-E374999- PGS (12920 12640) SGN-E236652- PGS (12920 12640) SGN-E377133- PGS (12920 12640) SGN-E241959- PGS (12920 12675) SGN-E396057+ PGS (12920 12685) SGN-E356257+ PGS (12920 12691) SGN-E377132+ PGS (12920 12707) SGN-E396055+ PGS (12920 12709) SGN-E398551+ PGS (12920 12719) SGN-E396038+ PGS (12913 12753) SGN-E396037- 3-phase translation of AGS-2 (-strand): . . . . . . 12920 GTCGCAGGCACGACGGCCCGTCACAGGCTACGTAATTCACACTGGGTCGGATTTCTGTTA V A G T T A R H R L R N S H W V G F L L S Q A R R P V T G Y V I H T G S D F C - R R H D G P S Q A T - F T L G R I S V . . . . . . 12860 AGTAATTTAAGGGGCGTTTTGGACTATTCCGGCTTTAATTATAAAGTTAGTGGGTTTATA S N L R G V L D Y S G F N Y K V S G F I V I - G A F W T I P A L I I K L V G L Y K - F K G R F G L F R L - L - S - W V Y . . . . . . 12800 TTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTAT L I S L I T W G L K E V T L S K L V G Y - - V - L L G G - K R - P - V N - W V I I N K S N Y L G V K R G N L E - I S G L . . . . . . 12740 TATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAAT Y C H L L F L I I C - L G - K K E G L N I A I F Y S - L Y A N - G K R K R V - I L L P S F I L N Y M L I R V K E R G F E . . . . . . 12680 AAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATTGATAGAGAGAGACGAATGAAG K K K K R T E R E R R R I D R E R R M K R K R K E Q K E R E G E L I E R D E - R - E K E K N R K R E K E N - - R E T N E . . . . . . 12620 AGGAAAAACAAAAGCTTGGGAAATTTGCTTGCTTGATCACGAATCTTCGGTGGAGGTAGG R K N K S L G N L L A - S R I F G G G R G K T K A W E I C L L D H E S S V E V G E E K Q K L G K F A C L I T N L R W R - . . . . . . 12560 TTATGGTTTCTTTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATA L W F L L R Y S - - T L N S E - Y V L I Y G F F Y D I R N K L L I A N D M Y - - V M V S F T I F V I N S - - R M I C I D . . . . . . 12500 ATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTG I L - T L L C A - L Y A C M N E I I - L Y C K P C Y V L N C M L A - M K L Y N C N I V N P A M C L I V C L H E - N Y I I . . . . . . 12440 TGATTATATAAGCATGATGAAGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTT - L Y K H D E V I E S Q Y L A K P - S L D Y I S M M K L L N P N I L Q N P N L F V I I - A - - S Y - I P I S C K T L I S . . . . . . : 12380 TGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAG : TTTAGG C - - - G L G I K E G V M N - N N E : F R V N D E A L V - K K A - - T K I M S : L G L L M M R P W Y K R R R D E L K - - : V - . . . . . . 12235 GGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG G S G V T N R H V D L G D R V S R T D T D R V S R T D T - I - G I G C H E P T R G I G C H E P T R R F R G S G V T N R H . . . . . . 12175 TAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACG - I - G I G C H E P T R R F R G S G V T R F R G S G V T N R H V D L G D R V S R V D L G D R V S R T D T - I - G I G C H . . . . . . 12115 AATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGACC N R H V D L G D R V S R T D T - I - G T I D T - I - G I G C H E P T R R F R G P E S T R R F R G S G V T N R H V D L G D . . : . . . . 12055 GGAGTGTCACGTTCCGACAC : CAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATA G V S R S D T : K R N K D N E S - K M L I E C H V P T : P R E I K I M N L E R C - Y R S V T F R H : Q E K - R - - I L K D V N . . . . . . 11914 TACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCAT Y L I - M N I I S K - V - Y - G L S P H T - S K - T - F P N E Y D I E A - V L M I L N L N E H N F Q M S M I L R L E S S . . . . . . 11854 GTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTAT V - T - R - L L M I - Y L L L L H V E Y C E L D G N C - - Y S T C C C Y M L S I C V N L T V I V N D I V L A V A T C - V . . . . . . 11794 CATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATG H S - F Y D I T W Y I L I S I L S W P M I V D F M I L L G I Y - F L F - V G R - S - L I L - Y Y L V Y I D F Y F E L A D . . . . . . 11734 ATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTA I S T Q Y P C F V L T P T F M F S S C L Y L L S T R V L Y - L L L L C F L L V - D I Y S V P V F C T D S Y F Y V F F L F . . . . . . 11674 ATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTT I V E C S K R A V I F D S T V T L A S L L - S A A N V P S S S T Q Q - L - P V F N C R V Q Q T C R H L R L N S N S S Q S . . . . . . 11614 CAGTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGTTTGGACTGGATCTTCCTTTTCA Q Y S G Y Q G E L M L L V W T G S S F S S T P D I R V S - C F - F G L D L P F H S V L R I S G - A N A S S L D W I F L F . . . . . . 11554 TGTCTTGATGCCTTGAAGTTCCGGCATGGACTAACTTTTATGTATTTTTAGGTTCTTAGA C L D A L K F R H G L T F M Y F - V L R V L M P - S S G M D - L L C I F R F L E M S - C L E V P A W T N F Y V F L G S - . . . . . . 11494 AACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGG N S - I - - F E V D V L V M M T S R F W T L R F S N L K - M F L - - - L P D F G K L L D L V I - S R C S C D D D F Q I L . . . . . . 11434 GAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTAT E I I V I E L V F I N E F K S S A L L Y K - - L L N W F L L M S L S L P H Y F M G N N S Y - I G F Y - - V - V F R I T L . . . . . . 11374 GTTGATATTACATTAAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTA V D I T L K C - G L D W L V R S H R R V L I L H - N V K V - I G W F A H I G G - C - Y Y I K M L R F R L V G S L T - E G . . . . . 11314 AGTGTGGGTGCCAGTCGCGGCTCGGTATTTGGGTCGTGACACGAC S V G A S R G S V F G S - H D V W V P V A A R Y L G R D T K C G C Q S R L G I W V V T R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-1_AGS-2_PPS_1 (11785 11504) (frame '1'; 279 bp, 93 residues) 1 FYDITWYILI SILSWPMIST QYPCFVLTPT FMFSSCLIVE CSKRAVIFDS TVTLASLQYS 61 GYQGELMLLV WTGSSFSCLD ALKFRHGLTF MYF- >C09HBa0278J12.1-_PGL-1_AGS-2_PPS_2 (12920 12708) (frame '1'; 210 bp, 70 residues) 1 VAGTTARHRL RNSHWVGFLL SNLRGVLDYS GFNYKVSGFI LISLITWGLK EVTLSKLVGY 61 YCHLLFLIIC - AGS-3 (12600 11918,11667 11379,11321 11312) SCR (e 0.899 d 0.900 a 0.998,e 0.826 d 0.000 a 0.892,e 0.800) Exon 1 12600 11918 ( 683 n); score: 0.899 Intron 1 11917 11668 ( 250 n); Pd: 0.900 Pa: 0.998 Exon 2 11667 11379 ( 289 n); score: 0.826 Intron 2 11378 11322 ( 57 n); Pd: 0.000 Pa: 0.892 Exon 3 11321 11312 ( 10 n); score: 0.800 PGS (11662 11379,11321 11312) SGN-E370357- PGS (11947 11918,11667 11418) SGN-E222578- PGS (12577 11934) SGN-E349726+ PGS (12600 12058) SGN-E347579+ PGS (12577 12177) SGN-E357559+ 3-phase translation of AGS-3 (-strand): . . . . . . 12600 AAATTTGCTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTTTTACGATA K F A C L I T N L R W R - V M V S F T I N L L A - S R I F G G G R L W F L L R Y I C L L D H E S S V E V G Y G F F Y D . . . . . . 12540 TTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATG F V I N S - - R M I C I D N I V N P A M S - - T L N S E - Y V L I I L - T L L C I R N K L L I A N D M Y - - Y C K P C Y . . . . . . 12480 TGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTGTGATTATATAAGCATGATGA C L I V C L H E - N Y I I V I I - A - - A - L Y A C M N E I I - L - L Y K H D E V L N C M L A - M K L Y N C D Y I S M M . . . . . . 12420 AGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGG S Y - I P I S C K T L I S L L M M R P W V I E S Q Y L A K P - S L C - - - G L G K L L N P N I L Q N P N L F V N D E A L . . . . . . 12360 TATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAA Y K R R R D E L K - - D - - C L G K K E I K E G V M N - N N E I D D V L V R K K V - K K A - - T K I M R L M M S W - E R . . . . . . 12300 GGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGAT G L M N - - K E I R G S G V K N R H V D A - - I D R R R L G D R V S R T D T - I R L D E L I E G D - G I G C Q E Q T R R . . . . . . 12240 TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCG L G D R V S R T D T - I - G I G C H E P - G I G C H E P T R R F R G S G V T N R F R G S G V T N R H V D L G D R V S R T . . . . . . 12180 ACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTG T R R F R G S G V T N R H V D L G D R V H V D L G D R V S R T D T - I - G I G C D T - I - G I G C H E P T R R F R G S G . . . . . . 12120 TCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGG S R I D T - I - G I G C H E P T R R F R H E S T R R F R G S G V T N R H V D L G V T N R H V D L G D R V S R T D T - I - . . . . . . 12060 GGACCGGAGTGTCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACA G P E C H V P T H S S R G S E C H V P T D R S V T F R H I V V G D R S V T Y R H G T G V S R S D T - - - G I G V S R T D . . . . . . 12000 CAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAG Q E D - - I - G S G V S R T D T R E I K K R I N E Y E G A E C H V L T Q E K - R T R G L M N M R E R S V T Y - H K R N K . . . : . . . 11940 ATAATGAATCTTGAAAGATGTTA : AGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGT I M N L E R C - : V Q Q T C R H L R L N S - - I L K D V : K C S K R A V I F D S T V D N E S - K M L : S A A N V P S S S T Q Q . . . . . . 11630 AACTCTAGCCAGTCTTCAGTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGTTTGGAC N S S Q S S V L R I S G - A N A S S L D T L A S L Q Y S G Y Q G E L M L L V W T - L - P V F S T P D I R V S - C F - F G . . . . . . 11570 TGGATCTTCCTTTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAACTTTTATGTA W I F L F M S - C L E V P A W T N F Y V G S S F S C L D A L K F R H G L T F M Y L D L P F H V L M P - S S G M D - L L C . . . . . . 11510 TTTTTAGGTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGAT F L G S - K L L D L V I - S R C S C D D F - V L R N S - I - - F E V D V L V M M I F R F L E T L R F S N L K - M F L - - . . . . . . 11450 GACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTC D F Q I L G N N S Y - I G F Y - - V - V T S R F W E I I V I E L V F I N E F K S - L P D F G K - - L L N W F L L M S L S . . : . 11390 TTCCGCATTACT : GAGGGTAAGT F R I T : E G K S A L L : R V S L P H Y : - G - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (13375 13347,12913 12906,12367 12362,11667 11656,11588 11400) SCR (e 0.724 d 0.900 a 0.988,e 0.375 d 0.320 a 0.415,e 0.667 d 0.084 a 0.998,e 0.500 d 0.000 a 0.000,e 0.927) Exon 1 13375 13347 ( 29 n); score: 0.724 Intron 1 13346 12914 ( 433 n); Pd: 0.900 Pa: 0.988 Exon 2 12913 12906 ( 8 n); score: 0.375 Intron 2 12905 12368 ( 538 n); Pd: 0.320 Pa: 0.415 Exon 3 12367 12362 ( 6 n); score: 0.667 Intron 3 12361 11668 ( 694 n); Pd: 0.084 Pa: 0.998 Exon 4 11667 11656 ( 12 n); score: 0.500 Intron 4 11655 11589 ( 67 n); Pd: 0.000 Pa: 0.000 Exon 5 11588 11400 ( 189 n); score: 0.927 PGS (13375 13347,12913 12906,12367 12362,11667 11656,11588 11400) SGN-E368629+ PGS (13375 13347,12913 12906,12367 12362,11667 11656,11588 11403) SGN-E352844+ PGS (13375 13347,12913 12906,12367 12362,11667 11656,11588 11425) SGN-E238551+ 3-phase translation of AGS-4 (-strand): . . . : . : . : . : 13375 TACTTTAAAATATTTCACCTTCATATTTC : GCACGACG : GCCTTG : AGTGCAGCAAAC : AATGC Y F K I F H L H I S : H D : G L : E C S K : Q C T L K Y F T F I F : R T T : A L : S A A N : N A L - N I S P S Y F : A R R : P - : V Q Q T : M . . . . . . 11583 TTCTAGTTTGGACTGGATCTTCCTTTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGAC F - F G L D L P F H V L M P - S S G M D S S L D W I F L F M S - C L E V P A W T L L V W T G S S F S C L D A L K F R H G . . . . . . 11523 TAACTTTTATGTATTTTTAGGTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATG - L L C I F R F L E T L R F S N L K - M N F Y V F L G S - K L L D L V I - S R C L T F M Y F - V L R N S - I - - F E V D . . . . . . 11463 TTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTA F L - - - L P D F G K - - L L N W F L L S C D D D F Q I L G N N S Y - I G F Y - V L V M M T S R F W E I I V I E L V F I . 11403 ATGA M - N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 22144 18806 AGS-1 (21095 21028,20944 20855,20767 20639,19636 19454,19227 18806) SCR (e 1.000 d 0.851 a 0.999,e 1.000 d 1.000 a 0.785,e 1.000 d 0.990 a 0.999,e 1.000 d 0.997 a 0.995,e 1.000) Exon 1 21095 21028 ( 68 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 Pa: 0.999 Exon 2 20944 20855 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 Pa: 0.785 Exon 3 20767 20639 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 Pa: 0.999 Exon 4 19636 19454 ( 183 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 Pa: 0.995 Exon 5 19227 18806 ( 422 n); score: 1.000 PGS (19194 18806) SGN-E353915+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 18829) SGN-E554014+ PGS (19165 18836) SGN-E203155- PGS (19459 19454,19227 18856) SGN-E357098+ PGS (19591 19454,19227 18895) SGN-E281030- PGS (20891 20855,20767 20639,19636 19454,19227 18900) SGN-E305444+ PGS (21077 21028,20944 20855,20767 20639,19636 19454,19227 19090) SGN-E339508+ PGS (21040 21028,20944 20855,20767 20639,19636 19454,19227 19107) SGN-E307542+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 19109) SGN-E257615+ PGS (21062 21028,20944 20855,20767 20639,19636 19454,19227 19111) SGN-E203154+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 19131) SGN-E270303+ PGS (21077 21028,20944 20855,20767 20639,19636 19454,19227 19131) SGN-E337829+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 19135) SGN-E257380+ PGS (21085 21028,20944 20855,20767 20639,19636 19454,19227 19144) SGN-E291468+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 19215) SGN-E257387+ PGS (21088 21028,20944 20855,20767 20639,19636 19454,19227 19221) SGN-E257448+ PGS (21067 21028,20944 20855,20767 20639,19636 19454) SGN-E233460+ PGS (21095 21028,20944 20855,20767 20639,19636 19455) SGN-E268277+ PGS (21040 21028,20944 20855,20767 20639,19636 19456) SGN-E313284+ PGS (21074 21028,20944 20855,20767 20639,19636 19461) SGN-E281970+ PGS (21088 21028,20944 20855,20767 20639,19636 19486) SGN-E293713+ PGS (21067 21028,20944 20855,20767 20639,19636 19504) SGN-E313408+ PGS (21074 21028,20944 20855,20767 20639,19636 19522) SGN-E282111+ PGS (21066 21028,20944 20855,20767 20639,19636 19529) SGN-E279151+ PGS (21048 21028,20944 20855,20767 20639,19636 19545) SGN-E247942+ PGS (21062 21028,20944 20855,20767 20639,19636 19607) SGN-E277272+ 3-phase translation of AGS-1 (-strand): . . . . . . 21095 CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGA R T E K P I S S R R R R R K V E A A G G E Q K N L S A A G G G G G K - K Q Q A E N R K T Y Q Q Q A A A E E S R S S R R . : . . . . . 21035 GCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCAC A S W : V S I - L P E V S P K R L S A L H H H : G Y R S S C R R - V Q K D - A H C T S I M : G I D L V A G G K S K K T K R I A . . . . : . . 20892 CAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGA Q N P T M F I S S F S S S : C T D F Y H G K I R R C L S Q A S R Q : V V P I S I T E P K S D D V Y L K L L V K : L Y R F L S R . . . . . . 20745 GGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATA G L V V S S M L - Y - R D S S - A R S I D W - - V Q C C D T E E T L H E Q D Q - R T G S K F N A V I L K R L F M S K I N . . . . . : . 20685 AAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTG K L H C L Y H V W L L T - L E R : R T I L S S I V S I T F G Y L H D W K : G G Q Y C K A P L S L S R L V T Y M T G K : E D N I . . . . . . 19623 CTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGG L L L L G L L P M M F E L M K S Q K S R C C C W D C Y R - C S S L - S P K N Q G A V V V G T V T D D V R A Y E V P K I K . . . . . . 19563 TTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAAT L L H - D S R K Q L E L G L R R L E E N Y C I E I H G N S - S - D - E G W R R M V T A L R F T E T A R A R I E K A G G E . . . . . : . 19503 GTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTA V - P L I S L L S E P L L G R T L : F C L F D L - S A C S Q S P S W A E H : C F A - C L T F D Q L A L R A P L G Q N T : V L L . . . . . . 19217 GGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCAC G V Q R T Q G R P L S T L V K H L V S H G S K E L K G G R - A L W - S T W C P T R G P K N S R E A V K H F G K A P G V P . . . . . . 19157 ACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAA T A T Q S L M F A Q R E G S L S E Q E E Q P H K A L C S R K G K E V - A S K R K H S H T K P Y V R A K G R K F E R A R G . . . . . . 19097 AGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATA R E I A E A T R L E E V L V F E C T L I E K - Q R L Q G L R K C W C L N A H - - K R N S R G Y K A - G S A G V - M H I D . . . . . . 19037 GAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATT E F L L E V F A N L L L P L I V S C W I S F Y - K Y L P T Y F Y H - - Y L V G F R V S I R S I C Q P T F T I N S I L L D . . . . . . 18977 TTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATG F L F Q L C F S Y T L Q H H I A D F - M S Y F N S V S L T H S S I I L L I F E C F L I S T L F L L H T P A S Y C - F L N . . . . . . 18917 TGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTAT C Y L F C K I N L Y L E T E S L Q Q G Y V I C F A K L I S I - R L N L Y N K V M V L S V L Q N - S L F R D - I F T T R L . . . . . . 18857 GCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAA A W - F I L F Y T N S S - Y I F I L G N L F C F I L I P L N T F L - C L V I Y F V L Y - F L L I H F Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-2_AGS-1_PPS_1 (21093 21028,20944 20855,20767 20639,19636 19454,19227 19069) (frame '0'; 624 bp, 208 residues) 1 NRKTYQQQAA AEESRSSRRS IMGIDLVAGG KSKKTKRIAP KSDDVYLKLL VKLYRFLSRR 61 TGSKFNAVIL KRLFMSKINK APLSLSRLVT YMTGKEDNIA VVVGTVTDDV RAYEVPKIKV 121 TALRFTETAR ARIEKAGGEC LTFDQLALRA PLGQNTVLLR GPKNSREAVK HFGKAPGVPH 181 SHTKPYVRAK GRKFERARGK RNSRGYKA- AGS-2 (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) SCR (e 1.000 d 0.851 a 0.999,e 1.000 d 1.000 a 0.785,e 1.000 d 0.526 a 0.000,e 1.000 d 0.997 a 0.995,e 0.994) Exon 1 21089 21028 ( 62 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 Pa: 0.999 Exon 2 20944 20855 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 Pa: 0.785 Exon 3 20767 20660 ( 108 n); score: 1.000 Intron 3 20659 19565 (1095 n); Pd: 0.526 Pa: 0.000 Exon 4 19564 19454 ( 111 n); score: 1.000 Intron 4 19453 19228 ( 226 n); Pd: 0.997 Pa: 0.995 Exon 5 19227 18895 ( 333 n); score: 0.994 PGS (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) SGN-E549082- PGS (21089 21028,20944 20855,20767 20660,19564 19454,19227 18895) SGN-E544679+ PGS (21088 21028,20944 20855,20767 20660,19564 19454,19227 19107) SGN-E305139+ 3-phase translation of AGS-2 (-strand): . . . . . . 21089 GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCA E K P I S S R R R R R K V E A A G G A S K N L S A A G G G G G K - K Q Q A E H H K T Y Q Q Q A A A E E S R S S R R S I . : . . . . . 21029 TG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAAT W : V S I - L P E V S P K R L S A L H Q N : G Y R S S C R R - V Q K D - A H C T K I M : G I D L V A G G K S K K T K R I A P K . . . . : . . 20886 CCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTG P T M F I S S F S S S : C T D F Y H G G L R R C L S Q A S R Q : V V P I S I T E D W S D D V Y L K L L V K : L Y R F L S R R T . . . . . . 20739 GTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTC V V S S M L - Y - R D S S - A R S I K L - - V Q C C D T E E T L H E Q D Q - S S G S K F N A V I L K R L F M S K I N K A . . : . . . . 20679 CATTGTCTCTATCACGTTTG : GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGA H C L Y H V W : L L H - D S R K Q L E L G I V S I T F : G Y C I E I H G N S - S - D P L S L S R L : V T A L R F T E T A R A R . . . . . . 19524 TTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTG L R R L E E N V - P L I S L L S E P L L - E G W R R M F D L - S A C S Q S P S W I E K A G G E C L T F D Q L A L R A P L . . : . . . . 19464 GGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTG G R T L : F C L G V Q R T Q G R P L S T L A E H : C F A - G S K E L K G G R - A L W G Q N T : V L L R G P K N S R E A V K H F . . . . . . 19178 GTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGA V K H L V S H T A T Q S L M F A Q R E G - S T W C P T Q P H K A L C S R K G K E G K A P G V P H S H T K P Y V R A K G R . . . . . . 19118 AGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTG S L S E Q E E R E I A E A T R L E E V L V - A S K R K E K - Q R L Q G L R K C W K F E R A R G K R N S R G Y K A - G S A . . . . . . 19058 GTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCA V F E C T L I E F L L E V F A N L L L P C L N A H - - S F Y - K Y L P T Y F Y H G V - M H I D R V S I R S I C Q P T F T . . . . . . 18998 TTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCAT L I V S C W I F L F Q L C F S Y T L Q H - - Y L V G F S Y F N S V S L T H S S I I N S I L L D F L I S T L F L L H T P A . . . . . 18938 CATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAA H I A D F - M C Y L F C K I I L L I F E C V I C F A K L S Y C - F L N V L S V L Q N - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-2_AGS-2_PPS_1 (21087 21028,20944 20855,20767 20660,19564 19454,19227 19069) (frame '0'; 525 bp, 175 residues) 1 KTYQQQAAAE ESRSSRRSIM GIDLVAGGKS KKTKRIAPKS DDVYLKLLVK LYRFLSRRTG 61 SKFNAVILKR LFMSKINKAP LSLSRLVTAL RFTETARARI EKAGGECLTF DQLALRAPLG 121 QNTVLLRGPK NSREAVKHFG KAPGVPHSHT KPYVRAKGRK FERARGKRNS RGYKA- AGS-3 (19297 19272,19074 18900) SCR (e 0.577 d 0.538 a 0.000,e 0.994) Exon 1 19297 19272 ( 26 n); score: 0.577 Intron 1 19271 19075 ( 197 n); Pd: 0.538 Pa: 0.000 Exon 2 19074 18900 ( 175 n); score: 0.994 PGS (19297 19272,19074 18900) SGN-E252909- 3-phase translation of AGS-3 (-strand): . . . : . . . 19297 GAAATGATTATGTATTCATGGTAGAG : GCTTGAGGAAGTGCTGGTGTTTGAATGCACATTG E M I M Y S W - R : L E E V L V F E C T L K - L C I H G R : G L R K C W C L N A H - N D Y V F M V E : A - G S A G V - M H I . . . . . . 19040 ATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGG I E F L L E V F A N L L L P L I V S C W - S F Y - K Y L P T Y F Y H - - Y L V G D R V S I R S I C Q P T F T I N S I L L . . . . . . 18980 ATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGA I F L F Q L C F S Y T L Q H H I A D F - F S Y F N S V S L T H S S I I L L I F E D F L I S T L F L L H T P A S Y C - F L . . . 18920 ATGTGTTATCTGTTTTGCAAA M C Y L F C K C V I C F A N V L S V L Q Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (21108 21028,20944 20855,20767 20639,19636 19199) SCR (e 1.000 d 0.851 a 0.999,e 1.000 d 1.000 a 0.785,e 1.000 d 0.990 a 0.999,e 1.000) Exon 1 21108 21028 ( 81 n); score: 1.000 Intron 1 21027 20945 ( 83 n); Pd: 0.851 Pa: 0.999 Exon 2 20944 20855 ( 90 n); score: 1.000 Intron 2 20854 20768 ( 87 n); Pd: 1.000 Pa: 0.785 Exon 3 20767 20639 ( 129 n); score: 1.000 Intron 3 20638 19637 (1002 n); Pd: 0.990 Pa: 0.999 Exon 4 19636 19199 ( 438 n); score: 1.000 PGS (21108 21028,20944 20855,20767 20639,19636 19199) SGN-E343275+ PGS (21077 21028,20944 20855,20767 20639,19636 19340) SGN-E317277+ 3-phase translation of AGS-4 (-strand): . . . . . . 21108 TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGA F F H S P N R K T Y Q Q Q A A A E E S R F S I L R T E K P I S S R R R R R K V E F P F S E Q K N L S A A G G G G G K - . . . : . . . 21048 AGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACT S S R R S I M : G I D L V A G G K S K K T A A G G A S W : V S I - L P E V S P K R L K Q Q A E H H : G Y R S S C R R - V Q K D . . . . . . : 20905 AAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGA K R I A P K S D D V Y L K L L V K : L Y R S A L H Q N P T M F I S S F S S S : C T D - A H C T K I R R C L S Q A S R Q : V V P . . . . . . 20758 TTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATG F L S R R T G S K F N A V I L K R L F M F Y H G G L V V S S M L - Y - R D S S - I S I T E D W - - V Q C C D T E E T L H . . . . . . : 20698 AGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : S K I N K A P L S L S R L V T Y M T G K : A R S I K L H C L Y H V W L L T - L E R : E Q D Q - S S I V S I T F G Y L H D W K : . . . . . . 19636 GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTC E D N I A V V V G T V T D D V R A Y E V R T I L L L L L G L L P M M F E L M K S G G Q Y C C C C W D C Y R - C S S L - S . . . . . . 19576 CCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAG P K I K V T A L R F T E T A R A R I E K Q K S R L L H - D S R K Q L E L G L R R P K N Q G Y C I E I H G N S - S - D - E . . . . . . 19516 GCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAAC A G G E C L T F D Q L A L R A P L G Q N L E E N V - P L I S L L S E P L L G R T G W R R M F D L - S A C S Q S P S W A E . . . . . . 19456 ACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATC T V R N F S L S S V C I F M P F L S S I L Y G T S L S H Q F A F L C L F F H Q S H C T E L L S L I S L H F Y A F S F I N . . . . . . 19396 AAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAG K - I I R E Y A V V L F T S I - - Q T E S E - L E N M L - C S S L V Y N N K P R Q V N N - R I C C S A L H - Y I I T N R . . . . . . 19336 GTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGG V F L E L W F E S R P A - E M I M Y S W C F - N C G L N L V L H R K - L C I H G G V F R I V V - I S S C I G N D Y V F M . . . . . . 19276 TAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAG - R - H W L V I C F V M L S - S G F A - R G N I G - S F V L - C F L D Q V L L R V E V T L A S H L F C N A F L I R F C L . . 19216 GGGTCCAAAGAACTCAAG G S K E L K G P K N S G V Q R T Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-2_AGS-4_PPS_1 (21108 21028,20944 20855,20767 20639,19636 19391) (frame '1'; 543 bp, 181 residues) 1 FFHSPNRKTY QQQAAAEESR SSRRSIMGID LVAGGKSKKT KRIAPKSDDV YLKLLVKLYR 61 FLSRRTGSKF NAVILKRLFM SKINKAPLSL SRLVTYMTGK EDNIAVVVGT VTDDVRAYEV 121 PKIKVTALRF TETARARIEK AGGECLTFDQ LALRAPLGQN TVRNFSLSSV CIFMPFLSSI 181 K- AGS-5 (22144 21913,21522 21284) SCR (e 0.927 d 0.000 a 0.000,e 0.916) Exon 1 22144 21913 ( 232 n); score: 0.927 Intron 1 21912 21523 ( 390 n); Pd: 0.000 Pa: 0.000 Exon 2 21522 21284 ( 239 n); score: 0.916 PGS (22144 21913,21522 21284) SGN-E249562+ 3-phase translation of AGS-5 (-strand): . . . . . . 22144 AGAACCTATGCTTTCTCATCTGAAAGAGTTCAACCTATTCTTTAATATAATCTTCCCACA R T Y A F S S E R V Q P I L - Y N L P T E P M L S H L K E F N L F F N I I F P H N L C F L I - K S S T Y S L I - S S H . . . . . . 22084 TTTTATGAACAATCTCTTCTCGATGAGCTTGCATTTTCGAATCAGACGATCGAGAAGATG F Y E Q S L L D E L A F S N Q T I E K M F M N N L F S M S L H F R I R R S R R - I L - T I S S R - A C I F E S D D R E D . . . . . . 22024 AAGCAATGTTGTTACCCTAAGCCAGTAGTTCGTCACTTTCATTAACAACCATATCATCAT K Q C C Y P K P V V R H F H - Q P Y H H S N V V T L S Q - F V T F I N N H I I I E A M L L P - A S S S S L S L T T I S S . . . . . . : 21964 TTTCATATTCATTGAATATTCCATCACTACTTTGGTGTTCACGTAAAAAATT : ATTGGTTG F H I H - I F H H Y F G V H V K N : Y W L F I F I E Y S I T T L V F T - K I : I G W F S Y S L N I P S L L W C S R K K L : L V . . . . . . 21514 GTGTCAATAAATATTTTTTTTTTATAAAATAAAAAGTTAAGGGTAAAAATTGAATTTCTA V S I N I F F L - N K K L R V K I E F L C Q - I F F F Y K I K S - G - K L N F - G V N K Y F F F I K - K V K G K N - I S . . . . . . 21454 AAACTTTCCAAATAACGAAATTCGGCCCAAATACTAGTTTTTTCTAGTATTTGGGAATTT K L S K - R N S A Q I L V F S S I W E F N F P N N E I R P K Y - F F L V F G N L K T F Q I T K F G P N T S F F - Y L G I . . . . . . 21394 GAAAAATTTGCCAAAAAAATTTGCCAAATAATAAAAAAGTGTATGGACAAACAAAATTTT E K F A K K I C Q I I K K C M D K Q N F K N L P K K F A K - - K S V W T N K I L - K I C Q K N L P N N K K V Y G Q T K F . . . . . . 21334 GTCAAGTTTTTCCCCAAATTTTACTTGCAAAATTTATGGGCAAACGGGCCC V K F F P K F Y L Q N L W A N G P S S F S P N F T C K I Y G Q T G C Q V F P Q I L L A K F M G K R A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 23099 22608 AGS-1 (23099 22608) SCR (e 0.733) Exon 1 23099 22608 ( 492 n); score: 0.733 PGS (23099 22608) SGN-E379112- PGS (23099 22608) SGN-E394609+ PGS (23099 22608) SGN-E379618+ PGS (23099 22608) SGN-E393065+ PGS (22898 22608) SGN-E392605- PGS (22898 22608) SGN-E394141- PGS (23099 22732) SGN-E200845+ PGS (23099 22760) SGN-E393076+ PGS (23099 22795) SGN-E393075+ 3-phase translation of AGS-1 (-strand): . . . . . . 23099 AATTATAAGTGTATACGAAGAAGATATATGTTTTTGCATTTCTATATACAATTTTCTCTC N Y K C I R R R Y M F L H F Y I Q F S L I I S V Y E E D I C F C I S I Y N F L S L - V Y T K K I Y V F A F L Y T I F S . . . . . . 23039 GCTTTATACAAAACAAAAACACAATTTATACACTTTTGTTGTATAAAGCGAGAGAAAATT A L Y K T K T Q F I H F C C I K R E K I L Y T K Q K H N L Y T F V V - S E R K L R F I Q N K N T I Y T L L L Y K A R E N . . . . . . 22979 GTATTTTGCTGCAATTGTATAATCGCTGGCCTATTTCGCTGAAATTATTGTATAAATTTT V F C C N C I I A G L F R - N Y C I N F Y F A A I V - S L A Y F A E I I V - I L C I L L Q L Y N R W P I S L K L L Y K F . . . . . . 22919 GCATTTGTATACAATTGAATCGAAATAAAATGTTTGTATATCGTATAATTAATTGTATAG A F V Y N - I E I K C L Y I V - L I V - H L Y T I E S K - N V C I S Y N - L Y S C I C I Q L N R N K M F V Y R I I N C I . . . . . . 22859 CACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAG H E D I Y F C M C I Y N F L S L Y T K Q T K I Y I F A C V Y T I F S R F I Q N R A R R Y I F L H V Y I Q F S L A L Y K T . . . . . . 22799 AAACACAATTTATGCCCTTCTATTCTACAAAGCGAGAGAGTCGAGCAGAGGGAGAGAAAC K H N L C P S I L Q S E R V E Q R E R N N T I Y A L L F Y K A R E S S R G R E T E T Q F M P F Y S T K R E S R A E G E K . . . . . . 22739 GAGTGAGAATGTGAAAGAGGCGACTGAGAGTTTAGGGAGAGAGGCGACTGACAAACGTTT E - E C E R G D - E F R E R G D - Q T F S E N V K E A T E S L G R E A T D K R L R V R M - K R R L R V - G E R R L T N V . . . . . . 22679 GCTATGAGCCACAATTAAATCAAACAGTAGCTACTCAATTTATTTTAAATTATTAATTTG A M S H N - I K Q - L L N L F - I I N L L - A T I K S N S S Y S I Y F K L L I C C Y E P Q L N Q T V A T Q F I L N Y - F . . 22619 CTATTTTTTACA L F F T Y F L A I F Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-3_AGS-1_PPS_1 (23091 22726) (frame '0'; 363 bp, 121 residues) 1 VYTKKIYVFA FLYTIFSRFI QNKNTIYTLL LYKARENCIL LQLYNRWPIS LKLLYKFCIC 61 IQLNRNKMFV YRIINCIARR YIFLHVYIQF SLALYKTETQ FMPFYSTKRE SRAEGEKRVR 121 M- 3-phase translation of AGS-1 (+strand): . . . . . . 22608 TGTAAAAAATAGCAAATTAATAATTTAAAATAAATTGAGTAGCTACTGTTTGATTTAATT C K K - Q I N N L K - I E - L L F D L I V K N S K L I I - N K L S S Y C L I - L - K I A N - - F K I N - V A T V - F N . . . . . . 22668 GTGGCTCATAGCAAACGTTTGTCAGTCGCCTCTCTCCCTAAACTCTCAGTCGCCTCTTTC V A H S K R L S V A S L P K L S V A S F W L I A N V C Q S P L S L N S Q S P L S C G S - Q T F V S R L S P - T L S R L F . . . . . . 22728 ACATTCTCACTCGTTTCTCTCCCTCTGCTCGACTCTCTCGCTTTGTAGAATAGAAGGGCA T F S L V S L P L L D S L A L - N R R A H S H S F L S L C S T L S L C R I E G H H I L T R F S P S A R L S R F V E - K G . . . . . . 22788 TAAATTGTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATA - I V F L F C I K R E K I V Y T H A K I K L C F C F V - S E R K L Y I H M Q K Y I N C V S V L Y K A R E N C I Y T C K N . . . . . . 22848 TATATCTTCGTGCTATACAATTAATTATACGATATACAAACATTTTATTTCGATTCAATT Y I F V L Y N - L Y D I Q T F Y F D S I I S S C Y T I N Y T I Y K H F I S I Q L I Y L R A I Q L I I R Y T N I L F R F N . . . . . . 22908 GTATACAAATGCAAAATTTATACAATAATTTCAGCGAAATAGGCCAGCGATTATACAATT V Y K C K I Y T I I S A K - A S D Y T I Y T N A K F I Q - F Q R N R P A I I Q L C I Q M Q N L Y N N F S E I G Q R L Y N . . . . . . 22968 GCAGCAAAATACAATTTTCTCTCGCTTTATACAACAAAAGTGTATAAATTGTGTTTTTGT A A K Y N F L S L Y T T K V Y K L C F C Q Q N T I F S R F I Q Q K C I N C V F V C S K I Q F S L A L Y N K S V - I V F L . . . . . . 23028 TTTGTATAAAGCGAGAGAAAATTGTATATAGAAATGCAAAAACATATATCTTCTTCGTAT F V - S E R K L Y I E M Q K H I S S S Y L Y K A R E N C I - K C K N I Y L L R I F C I K R E K I V Y R N A K T Y I F F V . . 23088 ACACTTATAATT T L I I H L - Y T Y N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-3_AGS-1_PPS_1 (22781 23014) (frame '0'; 231 bp, 77 residues) 1 KGINCVSVLY KARENCIYTC KNIYLRAIQL IIRYTNILFR FNCIQMQNLY NNFSEIGQRL 61 YNCSKIQFSL ALYNKSV- PGL 4 (+ strand): 25445 26726 AGS-1 (25445 26726) SCR (e 0.998) Exon 1 25445 26726 (1282 n); score: 0.998 PGS (25445 25830) SGN-E278802+ PGS (25522 25972) SGN-E205095+ PGS (25757 26366) SGN-E372915+ PGS (25757 25981) SGN-E292818+ PGS (25997 26642) SGN-E372914- PGS (26222 26726) SGN-E356588+ 3-phase translation of AGS-1 (+strand): . . . . . . 25445 TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTA S S Y R R Q I L C L H F L M L H R F R V P V T D V K Y Y A C I S L C C T V F V Y Q L Q T S N I M P A F P Y V A P F S C . . . . . . 25505 CGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGT R C L I A V E - C G P L S R I Q L V L C G A - L L - N S A V L Y R G F S - F Y V T V P D C C R I V R S F I E D S V S F M . . . . . . 25565 CACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAA H M V V S L I S M M W - R S T W I G F - T W W S A - F L - C G E E V L G S A F N S H G G Q L D F Y D V V K K Y L D R L L . . . . . . 25625 CTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCC L K S W M E P C - S S F I R L S V V L P - S P G W S P V E A H S Y V Y R W C Y P T E V L D G A L L K L I H T S I G G V T . . . . . . 25685 AAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTC K Q C R W Q L T W L C L N A L V I F S F S N A D G S - H G C V - T R L - F F L S Q A M Q M A A N M A V F E R A C D F F F . . . . . . 25745 GTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGT V M L H S F Q G F H - E W Q R G G G D C S C C T A F R D S I E N G R E G E E T V R H A A Q L S G I P L R M A E R G R R L . . . . . . 25805 TCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAA S L - L K P A M L L K R C F Q V C L S K P F D - S P R C C - R D A F R S A - A K F P L T K A R D A A E E M L S G L L K Q . . . . . . 25865 AGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTAC R L M G S F C - L R M - I G W P M I L Y G - W V P F V D - E C E L D G R - S S T K V D G F L L L I E N V N W M A D D P L . . . . . . 25925 AGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTG R V E M N M C M R - L F F L K H - L L L E W K - I C A - G D Y F S - N T N F Y C Q S G N E Y V H E V I I F L E T L T S T . . . . . . 25985 CCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATA P S K Y C L F K F - R E F C K M F C V I P A N I A C S S S E E S F A R C S V S Y A Q Q I L P V Q V L K R V L Q D V L C H . . . . . . 26045 TATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATG Y Q R - L L G L Y W G N Q L K G S T - M I R D D C W G F T G G I S - K V Q R E C I S E M I V G A L L G E S V K R F N V N . . . . . . 26105 CTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTC L L W L L M L I S V C W N H L L K T K L C Y G S - C - Y P Y V G I I C - K P S S A V M A L D V D I R M L E S F A E N Q A . . . . . . 26165 CTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGT L S Y L K Q M L V S - K Q H W A S P G S S P I - S R C - S A E S S I G R V Q A V P L L S E A D A S Q L K A A L G E S R Q . . . . . . 26225 TGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGA W L I Y S - A I T R K I S - I Q L L E R G - S T L K Q S P G K F P E S S Y - R E L V N L L L S N H P E N F L N P V I R E . . . . . . 26285 GAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATC E V I M L W T T A K L L L S R K R - R I K L - C F G L P Q S C Y Y L G K D E G S R S Y N A L D Y R K V V T I S E K M K D . . . . . . 26345 AAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGA K V T D F L G L L A Q G E L S R T L K R K - Q T F W V F W H K G S - A E H - K E Q S D R L F G S F G T R G A K Q N T K K . . . . . . 26405 AATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGT N L L M H - L K D - R T S T E S A N L C I S - C I N - K I E G R Q L S L R I S V K S L D A L I K R L K D V N - V C E S L . . . . . . 26465 ATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCA M L C S L G R S P Y C S C V D Y L L I S C Y V P - G D L H I V V V L I T C - F H Y V M F L R E I S I L - L C - L L A D F . . . . . . 26525 TATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCT Y L A S F F S A N C L P F Y V I F S S P I - L P F F L Q I A Y H F T - F F P P L I S S F L F F C K L P T I L R N F F L P . . . . . . 26585 AGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGAT S S T L I A V L F F R A Y I F F C N S D V P H - L L Y Y S S E H T Y S F A T Q I - F H I D C C I I L Q S I H I L L Q L R . . . . . . 26645 ATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATA I V F L S H E T S L F S F G F F F R R I - S F Y L M K L V S S R L A S F S V E - Y S L F I S - N - S L L V W L L F P - N . . . 26705 ATTACATCTTCTCTTCGATTTA I T S S L R F L H L L F D L N Y I F S S I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-4_AGS-1_PPS_1 (25447 26448) (frame '0'; 999 bp, 333 residues) 1 QLQTSNIMPA FPYVAPFSCT VPDCCRIVRS FIEDSVSFMS HGGQLDFYDV VKKYLDRLLT 61 EVLDGALLKL IHTSIGGVTQ AMQMAANMAV FERACDFFFR HAAQLSGIPL RMAERGRRLF 121 PLTKARDAAE EMLSGLLKQK VDGFLLLIEN VNWMADDPLQ SGNEYVHEVI IFLETLTSTA 181 QQILPVQVLK RVLQDVLCHI SEMIVGALLG ESVKRFNVNA VMALDVDIRM LESFAENQAP 241 LLSEADASQL KAALGESRQL VNLLLSNHPE NFLNPVIRER SYNALDYRKV VTISEKMKDQ 301 SDRLFGSFGT RGAKQNTKKK SLDALIKRLK DVN- >C09HBa0278J12.1+_PGL-4_AGS-1_PPS_2 (26435 26725) (frame '1'; 291 bp, 97 residues) 1 RTSTESANLC MLCSLGRSPY CSCVDYLLIS YLASFFSANC LPFYVIFSSP SSTLIAVLFF 61 RAYIFFCNSD IVFLSHETSL FSFGFFFRRI ITSSLRF 3-phase translation of AGS-1 (-strand): . . . . . . 26726 TAAATCGAAGAGAAGATGTAATTATTCTACGGAAAAAGAAGCCAAACGAGAAGAGACTAG - I E E K M - L F Y G K R S Q T R R D - K S K R R C N Y S T E K E A K R E E T S N R R E D V I I L R K K K P N E K R L . . . . . . 26666 TTTCATGAGATAAAAAGACTATATCTGAGTTGCAAAAGAATATGTATGCTCTGAAGAATA F H E I K R L Y L S C K R I C M L - R I F M R - K D Y I - V A K E Y V C S E E - V S - D K K T I S E L Q K N M Y A L K N . . . . . . 26606 ATACAGCAATCAATGTGGAACTAGGGGAGGAAAAAATTACGTAAAATGGTAGGCAATTTG I Q Q S M W N - G R K K L R K M V G N L Y S N Q C G T R G G K N Y V K W - A I C N T A I N V E L G E E K I T - N G R Q F . . . . . . 26546 CAGAAAAAAAGGAAGCTAGATATGAAATCAGCAAGTAATCAACACAACTACAATATGGAG Q K K R K L D M K S A S N Q H N Y N M E R K K G S - I - N Q Q V I N T T T I W R A E K K E A R Y E I S K - S T Q L Q Y G . . . . . . 26486 ATCTCCCTAAGGAACATAACATACAGAGATTCGCAGACTCAGTTGACGTCCTTCAATCTT I S L R N I T Y R D S Q T Q L T S F N L S P - G T - H T E I R R L S - R P S I F D L P K E H N I Q R F A D S V D V L Q S . . . . . . 26426 TTAATTAATGCATCAAGAGATTTCTTTTTAGTGTTCTGCTTAGCTCCCCTTGTGCCAAAA L I N A S R D F F L V F C L A P L V P K - L M H Q E I S F - C S A - L P L C Q K F N - C I K R F L F S V L L S S P C A K . . . . . . 26366 GACCCAAAAAGTCTGTCACTTTGATCCTTCATCTTTTCCGAGATAGTAACAACTTTGCGG D P K S L S L - S F I F S E I V T T L R T Q K V C H F D P S S F P R - - Q L C G R P K K S V T L I L H L F R D S N N F A . . . . . . 26306 TAGTCCAAAGCATTATAACTTCTCTCTCTAATAACTGGATTCAGGAAATTTTCCGGGTGA - S K A L - L L S L I T G F R K F S G - S P K H Y N F S L - - L D S G N F P G D V V Q S I I T S L S N N W I Q E I F R V . . . . . . 26246 TTGCTTAAGAGTAGATTAACCAACTGCCTGGACTCGCCCAATGCTGCTTTCAGCTGACTA L L K S R L T N C L D S P N A A F S - L C L R V D - P T A W T R P M L L S A D - I A - E - I N Q L P G L A Q C C F Q L T . . . . . . 26186 GCATCTGCTTCAGATAGGAGAGGAGCTTGGTTTTCAGCAAATGATTCCAACATACGGATA A S A S D R R G A W F S A N D S N I R I H L L Q I G E E L G F Q Q M I P T Y G Y S I C F R - E R S L V F S K - F Q H T D . . . . . . 26126 TCAACATCAAGAGCCATAACAGCATTCACGTTGAACCTTTTAACTGATTCCCCCAGTAAA S T S R A I T A F T L N L L T D S P S K Q H Q E P - Q H S R - T F - L I P P V K I N I K S H N S I H V E P F N - F P Q - . . . . . . 26066 GCCCCAACAATCATCTCTGATATATGACACAGAACATCTTGCAAAACTCTCTTCAGAACT A P T I I S D I - H R T S C K T L F R T P Q Q S S L I Y D T E H L A K L S S E L S P N N H L - Y M T Q N I L Q N S L Q N . . . . . . 26006 TGAACAGGCAATATTTGCTGGGCAGTAGAAGTTAGTGTTTCAAGAAAAATAATCACCTCA - T G N I C W A V E V S V S R K I I T S E Q A I F A G Q - K L V F Q E K - S P H L N R Q Y L L G S R S - C F K K N N H L . . . . . . 25946 TGCACATATTCATTTCCACTCTGTAGAGGATCATCGGCCATCCAATTCACATTCTCAATC C T Y S F P L C R G S S A I Q F T F S I A H I H F H S V E D H R P S N S H S Q S M H I F I S T L - R I I G H P I H I L N . . . . . . 25886 AACAAAAGGAACCCATCAACCTTTTGCTTAAGCAGACCTGAAAGCATCTCTTCAGCAGCA N K R N P S T F C L S R P E S I S S A A T K G T H Q P F A - A D L K A S L Q Q H Q Q K E P I N L L L K Q T - K H L F S S . . . . . . 25826 TCGCGGGCTTTAGTCAAAGGGAACAGTCTCCTCCCCCTCTCTGCCATTCTCAATGGAATC S R A L V K G N S L L P L S A I L N G I R G L - S K G T V S S P S L P F S M E S I A G F S Q R E Q S P P P L C H S Q W N . . . . . . 25766 CCTGAAAGCTGTGCAGCATGACGAAAGAAAAAATCACAAGCGCGTTCAAACACAGCCATG P E S C A A - R K K K S Q A R S N T A M L K A V Q H D E R K N H K R V Q T Q P C P - K L C S M T K E K I T S A F K H S H . . . . . . 25706 TTAGCTGCCATCTGCATTGCTTGGGTAACACCACCGATAGACGTATGAATGAGCTTCAAC L A A I C I A W V T P P I D V - M S F N - L P S A L L G - H H R - T Y E - A S T V S C H L H C L G N T T D R R M N E L Q . . . . . . 25646 AGGGCTCCATCCAGGACTTCAGTTAAAAGCCGATCCAAGTACTTCTTCACCACATCATAG R A P S R T S V K S R S K Y F F T T S - G L H P G L Q L K A D P S T S S P H H R Q G S I Q D F S - K P I Q V L L H H I I . . . . . . 25586 AAATCAAGCTGACCACCATGTGACATAAAACTAACTGAATCCTCGATAAAGGACCGCACT K S S - P P C D I K L T E S S I K D R T N Q A D H H V T - N - L N P R - R T A L E I K L T T M - H K T N - I L D K G P H . . . . . . 25526 ATTCTACAGCAATCAGGCACCGTACACGAAAACGGTGCAACATAAGGAAATGCAGGCATA I L Q Q S G T V H E N G A T - G N A G I F Y S N Q A P Y T K T V Q H K E M Q A - Y S T A I R H R T R K R C N I R K C R H . . . 25466 ATATTTGACGTCTGTAACTGGA I F D V C N W Y L T S V T G N I - R L - L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-4_AGS-1_PPS_1 (26003 25746) (frame '1'; 255 bp, 85 residues) 1 TGNICWAVEV SVSRKIITSC TYSFPLCRGS SAIQFTFSIN KRNPSTFCLS RPESISSAAS 61 RALVKGNSLL PLSAILNGIP ESCAA- >C09HBa0278J12.1-_PGL-4_AGS-1_PPS_2 (26582 26343) (frame '1'; 237 bp, 79 residues) 1 GRKKLRKMVG NLQKKRKLDM KSASNQHNYN MEISLRNITY RDSQTQLTSF NLLINASRDF 61 FLVFCLAPLV PKDPKSLSL- PGL 5 (+ strand): 27255 27857 AGS-1 (27255 27857) SCR (e 0.996) Exon 1 27255 27857 ( 603 n); score: 0.996 PGS (27255 27857) SGN-E313277+ 3-phase translation of AGS-1 (+strand): . . . . . . 27255 CCTTATAAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATG P Y K K K R - T L E Q R K T S M F T E M L I K K N G E L W N N E K H Q C S Q K C L - K K T V N F G T T K N I N V H R N . . . . . . 27315 TCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTT S I A S T R S I F Y L F L F F F A T A V Q - L Q Q E V F F T S F S S F L P L Q F V N S F N K K Y F L P L S L L F C H C S . . . . . . 27375 TCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGG S R N E K L S A Y E E L Q R Y D F P M G Q E M R S Y Q L M K S Y S V M I S Q W G F K K - E A I S L - R A T A L - F P N G . . . . . . 27435 ATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCT I L P K G V K D Y K L N P K T G E F S A F F Q K E - K T T N - T P K Q V N S Q L D S S K R S K R L Q I K P Q N R - I L S . . . . . . 27495 TATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCT Y L N S T C S F K L E N S Y Q L N Y K P I L I L P A A S N W R T H I N - I T S L L S - F Y L Q L Q I G E L I S T E L Q A . . . . . . 27555 GTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAG V I K G V I S K G R L R K L C G V S V K L - K E L Y L K A G L G N C V V L V - R C Y K R S Y I - R Q A - E T V W C - C K . . . . . . 27615 GTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTT V V L L W L N I V E V N R K G K N L E F W C C Y G L T L L K L T E K V R I L S F G G V A M A - H C - S - Q K R - E S - V . . . . . . 27675 TCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGT S V G L A S A N F P V E N F E E C P Q C Q L D S L R R I F R L R I L R N V H S V F S W T R F G E F S G - E F - G M S T V . . . . . . 27735 GGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTT G R G L N C V D E D D N V V S S F - L L D V D - I V L M K M T M L C L P F N Y F W T W I E L C - - R - Q C C V F L L T T . . . . . . 27795 TGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTT - L K S S C F F F F V F W W W K - C V F D - N L V V F F F L F S G G G N D V F F L I E I - L F F F F C F L V V E M M C F . 27855 TTG L F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-5_AGS-1_PPS_1 (27276 27788) (frame '1'; 510 bp, 170 residues) 1 TLEQRKTSMF TEMSIASTRS IFYLFLFFFA TAVSRNEKLS AYEELQRYDF PMGILPKGVK 61 DYKLNPKTGE FSAYLNSTCS FKLENSYQLN YKPVIKGVIS KGRLRKLCGV SVKVVLLWLN 121 IVEVNRKGKN LEFSVGLASA NFPVENFEEC PQCGRGLNCV DEDDNVVSSF - 3-phase translation of AGS-1 (-strand): . . . . . . 27857 CAAAAAAACACATCATTTCCACCACCAGAAAACAAAAAAAAAAAAACAACTAGATTTCAA Q K N T S F P P P E N K K K K T T R F Q K K T H H F H H Q K T K K K K Q L D F N K K H I I S T T R K Q K K K N N - I S . . . . . . 27797 TCAAAGTAGTTAAAAGGAAGACACAACATTGTCATCTTCATCAACACAATTCAATCCACG S K - L K G R H N I V I F I N T I Q S T Q S S - K E D T T L S S S S T Q F N P R I K V V K R K T Q H C H L H Q H N S I H . . . . . . 27737 TCCACACTGTGGACATTCCTCAAAATTCTCAACCGGAAAATTCGCCGAAGCGAGTCCAAC S T L W T F L K I L N R K I R R S E S N P H C G H S S K F S T G K F A E A S P T V H T V D I P Q N S Q P E N S P K R V Q . . . . . . 27677 TGAAAACTCAAGATTCTTACCTTTTCTGTTAACTTCAACAATGTTAAGCCATAGCAACAC - K L K I L T F S V N F N N V K P - Q H E N S R F L P F L L T S T M L S H S N T L K T Q D S Y L F C - L Q Q C - A I A T . . . . . . 27617 CACCTTTACACTAACACCACACAGTTTCCTAAGCCTGCCTTTAGATATAACTCCTTTTAT H L Y T N T T Q F P K P A F R Y N S F Y T F T L T P H S F L S L P L D I T P F I P P L H - H H T V S - A C L - I - L L L . . . . . . 27557 AACAGGCTTGTAATTCAGTTGATATGAGTTCTCCAATTTGAAGCTGCAGGTAGAATTAAG N R L V I Q L I - V L Q F E A A G R I K T G L - F S - Y E F S N L K L Q V E L R - Q A C N S V D M S S P I - S C R - N - . . . . . . 27497 ATAAGCTGAGAATTCACCTGTTTTGGGGTTTAATTTGTAGTCTTTTACTCCTTTTGGAAG I S - E F T C F G V - F V V F Y S F W K - A E N S P V L G F N L - S F T P F G R D K L R I H L F W G L I C S L L L L L E . . . . . . 27437 AATCCCCATTGGGAAATCATAACGCTGTAGCTCTTCATAAGCTGATAGCTTCTCATTTCT N P H W E I I T L - L F I S - - L L I S I P I G K S - R C S S S - A D S F S F L E S P L G N H N A V A L H K L I A S H F . . . . . . 27377 TGAAACTGCAGTGGCAAAAAAGAAGAGAAAGAGGTAAAAAATACTTCTTGTTGAAGCTAT - N C S G K K E E K E V K N T S C - S Y E T A V A K K K R K R - K I L L V E A I L K L Q W Q K R R E R G K K Y F L L K L . . . . . . 27317 TGACATTTCTGTGAACATTGATGTTTTTCGTTGTTCCAAAGTTCACCGTTTTTTTTTATA - H F C E H - C F S L F Q S S P F F F I D I S V N I D V F R C S K V H R F F L - L T F L - T L M F F V V P K F T V F F Y . 27257 AGG R K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-5_AGS-1_PPS_1 (27784 27545) (frame '2'; 237 bp, 79 residues) 1 KEDTTLSSSS TQFNPRPHCG HSSKFSTGKF AEASPTENSR FLPFLLTSTM LSHSNTTFTL 61 TPHSFLSLPL DITPFITGL- >C09HBa0278J12.1-_PGL-5_AGS-1_PPS_2 (27498 27304) (frame '0'; 192 bp, 64 residues) 1 DKLRIHLFWG LICSLLLLLE ESPLGNHNAV ALHKLIASHF LKLQWQKRRE RGKKYFLLKL 61 LTFL- PGL 6 (+ strand): 33177 33688 AGS-1 (33177 33688) SCR (e 0.898) Exon 1 33177 33688 ( 512 n); score: 0.898 PGS (33177 33597) SGN-E338920+ PGS (33179 33688) SGN-E347597+ 3-phase translation of AGS-1 (+strand): . . . . . . 33177 AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACA S F S G H R R - G F S V P D G I R D S T A S P V I G D E D S Q S P T A Y E I L Q L L R S S A M R I L S P R R H T R F Y . . . . . . 33237 GGAATACGATATTCCGGCAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAA G I R Y S G R D T S E G R N K V R T R Q E Y D I P A G I L P K G V T R Y E L D K R N T I F R Q G Y F R R A - Q G T N S T . . . . . . 33297 AACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTA N N G Q F R R L L - Q I V Q F Q H K R L T T G N F A V Y F N K S C S F S I S G Y K Q R A I S P F T L T N R A V S A - A A . . . . . . 33357 TGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAACTT - S Q V Y E - N Y W - N L - G S A C E L D L K Y M S K I T G K I S K D R L A N L M I S S I - V K L L V K S L R I G L R T . . . . . . 33417 GAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGA E R R T G E T A F F F C Q Y C G S Y S - K G V Q V K L L F F F V N I V G V T R D - K A Y R - N C F F F L S I L W E L L V . . . . . . 33477 CGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTT R R - S R F L R R C F F C - F C N - V L G D D L G F S V G V S S V D F A I E Y F T A M I S V S P S V F L L L I L Q L S T . . . . . . 33537 CTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGTAC L - T A R V W M W I - L C Q F W R K R Y Y E P P E C G C G F D C V N S G E N G T S M N R Q S V D V D L I V S I L E K T V . . . . . . 33597 TGGTGAGTTCAATTTAAAGCAGCTTATCTCTTCCACTTGAATTGTTAACTAAAATTTTCA W - V Q F K A A Y L F H L N C - L K F S G E F N L K Q L I S S T - I V N - N F Q L V S S I - S S L S L P L E L L T K I F . . . . 33657 GAGATTGGCTGTAAATTCAGTTGATTTGGGAT E I G C K F S - F G R L A V N S V D L G R D W L - I Q L I W D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-6_AGS-1_PPS_1 (33178 33636) (frame '2'; 456 bp, 152 residues) 1 ASPVIGDEDS QSPTAYEILQ EYDIPAGILP KGVTRYELDK TTGNFAVYFN KSCSFSISGY 61 DLKYMSKITG KISKDRLANL KGVQVKLLFF FVNIVGVTRD GDDLGFSVGV SSVDFAIEYF 121 YEPPECGCGF DCVNSGENGT GEFNLKQLIS ST- 3-phase translation of AGS-1 (-strand): . . . . . . 33688 ATCCCAAATCAACTGAATTTACAGCCAATCTCTGAAAATTTTAGTTAACAATTCAAGTGG I P N Q L N L Q P I S E N F S - Q F K W S Q I N - I Y S Q S L K I L V N N S S G P K S T E F T A N L - K F - L T I Q V . . . . . . 33628 AAGAGATAAGCTGCTTTAAATTGAACTCACCAGTACCGTTTTCTCCAGAATTGACACAAT K R - A A L N - T H Q Y R F L Q N - H N R D K L L - I E L T S T V F S R I D T I E E I S C F K L N S P V P F S P E L T Q . . . . . . 33568 CAAATCCACATCCACACTCTGGCGGTTCATAGAAGTACTCAATTGCAAAATCAACAGAAG Q I H I H T L A V H R S T Q L Q N Q Q K K S T S T L W R F I E V L N C K I N R R S N P H P H S G G S - K Y S I A K S T E . . . . . . 33508 AAACACCGACGGAGAAACCGAGATCATCGCCGTCACGAGTAACTCCCACAATATTGACAA K H R R R N R D H R R H E - L P Q Y - Q N T D G E T E I I A V T S N S H N I D K E T P T E K P R S S P S R V T P T I L T . . . . . . 33448 AAAAAAAAAGCAGTTTCACCTGTACGCCTTTCAAGTTCGCAAGCCGATCCTTAGAGATTT K K K A V S P V R L S S S Q A D P - R F K K K Q F H L Y A F Q V R K P I L R D F K K K S S F T C T P F K F A S R S L E I . . . . . . 33388 TACCAGTAATTTTACTCATATACTTGAGATCATAGCCGCTTATGCTGAAACTGCACGATT Y Q - F Y S Y T - D H S R L C - N C T I T S N F T H I L E I I A A Y A E T A R F L P V I L L I Y L R S - P L M L K L H D . . . . . . 33328 TGTTAAAGTAAACGGCGAAATTGCCCGTTGTTTTGTCGAGTTCGTACCTTGTTACGCCCT C - S K R R N C P L F C R V R T L L R P V K V N G E I A R C F V E F V P C Y A L L L K - T A K L P V V L S S S Y L V T P . . . . . . 33268 TCGGAAGTATCCCTGCCGGAATATCGTATTCCTGTAGAATCTCGTATGCCGTCGGGGACT S E V S L P E Y R I P V E S R M P S G T R K Y P C R N I V F L - N L V C R R G L F G S I P A G I S Y S C R I S Y A V G D . . . . 33208 GAGAATCCTCATCGCCGATGACCGGAGAAGCT E N P H R R - P E K R I L I A D D R R S - E S S S P M T G E A Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-6_AGS-1_PPS_1 (33609 33232) (frame '2'; 375 bp, 125 residues) 1 IELTSTVFSR IDTIKSTSTL WRFIEVLNCK INRRNTDGET EIIAVTSNSH NIDKKKKQFH 61 LYAFQVRKPI LRDFTSNFTH ILEIIAAYAE TARFVKVNGE IARCFVEFVP CYALRKYPCR 121 NIVFL- PGL 7 (- strand): 40784 35533 AGS-1 (40784 40753,36844 36785,36203 35860,35705 35533) SCR (e 0.750 d 0.000 a 0.373,e 0.550 d 0.900 a 0.000,e 0.909 d 0.622 a 0.000,e 0.863) Exon 1 40784 40753 ( 32 n); score: 0.750 Intron 1 40752 36845 (3908 n); Pd: 0.000 Pa: 0.373 Exon 2 36844 36785 ( 60 n); score: 0.550 Intron 2 36784 36204 ( 581 n); Pd: 0.900 Pa: 0.000 Exon 3 36203 35860 ( 344 n); score: 0.909 Intron 3 35859 35706 ( 154 n); Pd: 0.622 Pa: 0.000 Exon 4 35705 35533 ( 173 n); score: 0.863 PGS (35688 35533) SGN-E200682+ PGS (35925 35860,35705 35545) SGN-E578389+ PGS (35688 35550) SGN-E379333+ PGS (40784 40753,36844 36785,36203 35862) SGN-E394141+ PGS (40784 40753,36844 36785,36203 35909) SGN-E392605+ 3-phase translation of AGS-1 (-strand): . . . . : . . 40784 AATTACATTCTTATGAATGTCAATCTTTATTT : ATGATGGAACAACCTAAAAATTTAAGAA N Y I L M N V N L Y L : - W N N L K I - E I T F L - M S I F I : Y D G T T - K F K K L H S Y E C Q S L F : M M E Q P K N L R . . . . : . . 36816 GTTAGTGATACATTACGTAATATACAATTTAT : TGGGAAAATTGTATATAATAGCAAACTA V S D T L R N I Q F I : G K I V Y N S K L L V I H Y V I Y N L : L G K L Y I I A N - S - - Y I T - Y T I Y : W E N C I - - Q T . . . . . . 36175 ATAACCTAAATTAAATGGAATAACTAGGGTTTGATTTAATTGTGCTCCATAGTAAACATT I T - I K W N N - G L I - L C S I V N I - P K L N G I T R V - F N C A P - - T L N N L N - M E - L G F D L I V L H S K H . . . . . . 36115 AGCTAAAATTTGCCAGCGTCTCTCCTCCAAAAATCTCGCTCGCCACTCTCCATTCTCGCT S - N L P A S L L Q K S R S P L S I L A A K I C Q R L S S K N L A R H S P F S L - L K F A S V S P P K I S L A T L H S R . . . . . . 36055 CGCCTCTCTCGCTTTATACACAGAAGTGTATAATTTTATTTCTGTTTTGTATAAAGCGAG R L S R F I H R S V - F Y F C F V - S E A S L A L Y T E V Y N F I S V L Y K A R S P L S L Y T Q K C I I L F L F C I K R . . . . . . 35995 AGAAAATTGTATATTCACATGCAAAAATGTATATCTTCGTGTTATACACTTAATTATACA R K L Y I H M Q K C I S S C Y T L N Y T E N C I F T C K N V Y L R V I H L I I Q E K I V Y S H A K M Y I F V L Y T - L Y . . . . . . 35935 ATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGGCCAACGAATTATACAATTGC I Y K H F T S N I A E K K A N E L Y N C F T N I L L Q I L Q R K R P T N Y T I A N L Q T F Y F K Y C R E K G Q R I I Q L . . : . . . . 35875 GAATTATACAATTGCA : AATTATACAATTGCAGCAAAATAGGCCAGCGAATTATACAATTG E L Y N C : K L Y N C S K I G Q R I I Q L N Y T I A : N Y T I A A K - A S E L Y N C R I I Q L Q : I I Q L Q Q N R P A N Y T I . . . . . . 35661 TATATGTATAGCAAATTATACAGTTTTATGTTTGCTATGGAGTGCAATTATACAAAATTT Y M Y S K L Y S F M F A M E C N Y T K F I C I A N Y T V L C L L W S A I I Q N F V Y V - Q I I Q F Y V C Y G V Q L Y K I . . . . . . 35601 TGCTATAACATACAAATATAAATTTTTTATTTGCTATACGTGAAAGTCGTCCATAAAAAA C Y N I Q I - I F Y L L Y V K V V H K K A I T Y K Y K F F I C Y T - K S S I K N L L - H T N I N F L F A I R E S R P - K . 35541 TAAATGACA - M T K - I N D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-7_AGS-1_PPS_1 (36120 35860,35705 35682) (frame '2'; 282 bp, 94 residues) 1 TLAKICQRLS SKNLARHSPF SLASLALYTE VYNFISVLYK ARENCIFTCK NVYLRVIHLI 61 IQFTNILLQI LQRKRPTNYT IANYTIANYT IAAK- >C09HBa0278J12.1-_PGL-7_AGS-1_PPS_2 (36001 35860,35705 35581) (frame '1'; 264 bp, 88 residues) 1 SERKLYIHMQ KCISSCYTLN YTIYKHFTSN IAEKKANELY NCELYNCKLY NCSKIGQRII 61 QLYMYSKLYS FMFAMECNYT KFCYNIQI- AGS-2 (36449 35657) SCR (e 0.904) Exon 1 36449 35657 ( 793 n); score: 0.904 PGS (35920 35657) SGN-E379427+ PGS (36203 35731) SGN-E379112+ PGS (36203 35731) SGN-E394609- PGS (36198 35731) SGN-E393065- PGS (36052 35731) SGN-E393076- PGS (36032 35731) SGN-E393075- PGS (35881 35731) SGN-E392727- PGS (36203 35732) SGN-E379618- PGS (36178 35732) SGN-E200845- PGS (36449 36203) SGN-E315035- 3-phase translation of AGS-2 (-strand): . . . . . . 36449 TTACACAATCTGATGACCTTTAATAACGTGATTTCAGTTAATAATAACAGAAATCACGAT L H N L M T F N N V I S V N N N R N H D Y T I - - P L I T - F Q L I I T E I T I T Q S D D L - - R D F S - - - Q K S R . . . . . . 36389 AATTAATCCTAATTAATCGCAGCAGCTGTTAAAATGGGATGTATCAGTACTTATGTATCC N - S - L I A A A V K M G C I S T Y V S I N P N - S Q Q L L K W D V S V L M Y P - L I L I N R S S C - N G M Y Q Y L C I . . . . . . 36329 CGCGCCAGAGTGATGTATCCCGCTTCTTTGATTTTTAAGGGATTTTTAGTAATTTCAATT R A R V M Y P A S L I F K G F L V I S I A P E - C I P L L - F L R D F - - F Q F P R Q S D V S R F F D F - G I F S N F N . . . . . . 36269 CTTAAAGGGACAAATGGTCATTTTGTATTTATAATATGTGGTTCCTATAATTTATACTTT L K G T N G H F V F I I C G S Y N L Y F L K G Q M V I L Y L - Y V V P I I Y T L S - R D K W S F C I Y N M W F L - F I L . . . . . . 36209 AAAAAATGGGAAAATTGTATATAATAGCAAACTAATAACCTAAATTAAATGGAATAACTA K K W E N C I - - Q T N N L N - M E - L K N G K I V Y N S K L I T - I K W N N - - K M G K L Y I I A N - - P K L N G I T . . . . . . 36149 GGGTTTGATTTAATTGTGCTCCATAGTAAACATTAGCTAAAATTTGCCAGCGTCTCTCCT G F D L I V L H S K H - L K F A S V S P G L I - L C S I V N I S - N L P A S L L R V - F N C A P - - T L A K I C Q R L S . . . . . . 36089 CCAAAAATCTCGCTCGCCACTCTCCATTCTCGCTCGCCTCTCTCGCTTTATACACAGAAG P K I S L A T L H S R S P L S L Y T Q K Q K S R S P L S I L A R L S R F I H R S S K N L A R H S P F S L A S L A L Y T E . . . . . . 36029 TGTATAATTTTATTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATTCACATGCAAAA C I I L F L F C I K R E K I V Y S H A K V - F Y F C F V - S E R K L Y I H M Q K V Y N F I S V L Y K A R E N C I F T C K . . . . . . 35969 ATGTATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAATAT M Y I F V L Y T - L Y N L Q T F Y F K Y C I S S C Y T L N Y T I Y K H F T S N I N V Y L R V I H L I I Q F T N I L L Q I . . . . . . 35909 TGCAGAGAAAAAGGCCAACGAATTATACAATTGCGAATTATACAATTGCAGTGAAATACA C R E K G Q R I I Q L R I I Q L Q - N T A E K K A N E L Y N C E L Y N C S E I Q L Q R K R P T N Y T I A N Y T I A V K Y . . . . . . 35849 ATTTTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTATTTTTGTATAAAGC I F S S F I Q Q K C I Y C V S I F V - S F S L A L Y N R S V Y I V F L F L Y K A N F L - L Y T T E V Y I L C F Y F C I K . . . . . . 35789 GAGAAAAGTATATATCTTCTTGCTATACACTTATAATTATGCAATATACATATATTTTAA E K S I Y L L A I H L - L C N I H I F - R K V Y I F L L Y T Y N Y A I Y I Y F N R E K Y I S S C Y T L I I M Q Y T Y I L . . . . . . 35729 TTCGATTCAACTGTATGCAAAACAAATTATACAATTGCAGCAAAATAGGCCAGCGAATTA F D S T V C K T N Y T I A A K - A S E L S I Q L Y A K Q I I Q L Q Q N R P A N Y I R F N C M Q N K L Y N C S K I G Q R I . . 35669 TACAATTGTATAT Y N C I T I V Y I Q L Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-7_AGS-2_PPS_1 (36001 35657) (frame '2'; 345 bp, 115 residues) 1 SERKLYIHMQ KCISSCYTLN YTIYKHFTSN IAEKKANELY NCELYNCSEI QFSLALYNRS 61 VYIVFLFLYK ARKVYIFLLY TYNYAIYIYF NSIQLYAKQI IQLQQNRPAN YTIVY 3-phase translation of AGS-2 (+strand): . . . . . . 35657 ATATACAATTGTATAATTCGCTGGCCTATTTTGCTGCAATTGTATAATTTGTTTTGCATA I Y N C I I R W P I L L Q L Y N L F C I Y T I V - F A G L F C C N C I I C F A Y I Q L Y N S L A Y F A A I V - F V L H . . . . . . 35717 CAGTTGAATCGAATTAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGAT Q L N R I K I Y V Y C I I I S V - Q E D S - I E L K Y M Y I A - L - V Y S K K I T V E S N - N I C I L H N Y K C I A R R . . . . . . 35777 ATATACTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAA I Y F S R F I Q K - K H N I Y T S V V - Y T F L A L Y K N R N T I Y T L L L Y K Y I L F S L Y T K I E T Q Y I H F C C I . . . . . . 35837 AGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGC S - R K L Y F T A I V - F A I V - F V G A R E N C I S L Q L Y N S Q L Y N S L A K L E K I V F H C N C I I R N C I I R W . . . . . . 35897 CTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACA L F L C N I - S K M F V N C I I K C I T F F S A I F E V K C L - I V - L S V - H P F S L Q Y L K - N V C K L Y N - V Y N . . . . . . 35957 CGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAA R R Y T F L H V N I Q F S L A L Y K T E E D I H F C M - I Y N F L S L Y T K Q K T K I Y I F A C E Y T I F S R F I Q N R . . . . . . 36017 ATAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGA I K L Y T S V Y K A R E A S E N G E W R - N Y T L L C I K R E R R A R M E S G E N K I I H F C V - S E R G E R E W R V A . . . . . . 36077 GCGAGATTTTTGGAGGAGAGACGCTGGCAAATTTTAGCTAATGTTTACTATGGAGCACAA A R F L E E R R W Q I L A N V Y Y G A Q R D F W R R D A G K F - L M F T M E H N S E I F G G E T L A N F S - C L L W S T . . . . . . 36137 TTAAATCAAACCCTAGTTATTCCATTTAATTTAGGTTATTAGTTTGCTATTATATACAAT L N Q T L V I P F N L G Y - F A I I Y N - I K P - L F H L I - V I S L L L Y T I I K S N P S Y S I - F R L L V C Y Y I Q . . . . . . 36197 TTTCCCATTTTTTAAAGTATAAATTATAGGAACCACATATTATAAATACAAAATGACCAT F P I F - S I N Y R N H I L - I Q N D H F P F F K V - I I G T T Y Y K Y K M T I F S H F L K Y K L - E P H I I N T K - P . . . . . . 36257 TTGTCCCTTTAAGAATTGAAATTACTAAAAATCCCTTAAAAATCAAAGAAGCGGGATACA L S L - E L K L L K I P - K S K K R D T C P F K N - N Y - K S L K N Q R S G I H F V P L R I E I T K N P L K I K E A G Y . . . . . . 36317 TCACTCTGGCGCGGGATACATAAGTACTGATACATCCCATTTTAACAGCTGCTGCGATTA S L W R G I H K Y - Y I P F - Q L L R L H S G A G Y I S T D T S H F N S C C D - I T L A R D T - V L I H P I L T A A A I . . . . . . 36377 ATTAGGATTAATTATCGTGATTTCTGTTATTATTAACTGAAATCACGTTATTAAAGGTCA I R I N Y R D F C Y Y - L K S R Y - R S L G L I I V I S V I I N - N H V I K G H N - D - L S - F L L L L T E I T L L K V . . 36437 TCAGATTGTGTAA S D C V Q I V - I R L C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-7_AGS-2_PPS_1 (35918 36178) (frame '1'; 258 bp, 86 residues) 1 SKMFVNCIIK CITRRYTFLH VNIQFSLALY KTEIKLYTSV YKAREASENG EWRARFLEER 61 RWQILANVYY GAQLNQTLVI PFNLGY- PGL 8 (- strand): 43982 41304 AGS-1 (43982 43078,43044 42901,42865 42290,42187 41942,41332 41304) SCR (e 0.844 d 0.000 a 0.000,e 0.705 d 0.000 a 0.000,e 0.741 d 0.900 a 0.000,e 0.814 d 0.000 a 0.000,e 0.724) Exon 1 43982 43078 ( 905 n); score: 0.844 Intron 1 43077 43045 ( 33 n); Pd: 0.000 Pa: 0.000 Exon 2 43044 42901 ( 144 n); score: 0.705 Intron 2 42900 42866 ( 35 n); Pd: 0.000 Pa: 0.000 Exon 3 42865 42290 ( 576 n); score: 0.741 Intron 3 42289 42188 ( 102 n); Pd: 0.900 Pa: 0.000 Exon 4 42187 41942 ( 246 n); score: 0.814 Intron 4 41941 41333 ( 609 n); Pd: 0.000 Pa: 0.000 Exon 5 41332 41304 ( 29 n); score: 0.724 PGS (42601 42290,42187 41942,41332 41304) SGN-E550212+ PGS (42158 41930) SGN-E252199- PGS (42055 41938) SGN-E275667- PGS (42610 42290,42187 41941) SGN-E550322+ PGS (42601 42290,42187 41941) SGN-E550127- PGS (42601 42290,42187 41941) SGN-E550140- PGS (42601 42290,42187 41941) SGN-E389553- PGS (42601 42290,42187 41941) SGN-E550065+ PGS (42601 42290,42187 41941) SGN-E550201+ PGS (42601 42290,42187 41941) SGN-E550207+ PGS (42601 42290,42187 41941) SGN-E550335+ PGS (42601 42290,42187 41941) SGN-E390013+ PGS (42601 42290,42187 41941) SGN-E550484+ PGS (42601 42290,42187 41941) SGN-E550211+ PGS (42601 42290,42187 41941) SGN-E549941+ PGS (42601 42290,42187 41941) SGN-E550025+ PGS (42601 42290,42187 41941) SGN-E396039+ PGS (42601 42290,42187 41941) SGN-E396056+ PGS (42600 42290,42187 41941) SGN-E374999+ PGS (42600 42290,42187 41941) SGN-E377133+ PGS (42601 42290,42187 41950) SGN-E389834+ PGS (42601 42290,42187 41950) SGN-E550464+ PGS (42601 42290,42187 41950) SGN-E396054+ PGS (42601 42290,42187 41950) SGN-E396058+ PGS (42600 42290,42187 41951) SGN-E241959+ PGS (42744 42290,42187 41986) SGN-E349296- PGS (42600 42290,42187 42024) SGN-E236652+ PGS (42601 42290) SGN-E396070+ PGS (43148 43078,43044 42901,42865 42370) SGN-E546548- PGS (43831 43138) SGN-E546506+ PGS (43687 43280) SGN-E246710- PGS (43535 43280) SGN-E357033+ PGS (43402 43280) SGN-E391780- PGS (43982 43513) SGN-E351546- PGS (43982 43513) SGN-E356206- PGS (43982 43513) SGN-E356696- PGS (43841 43584) SGN-E222578+ PGS (43982 43594) SGN-E392027+ PGS (43982 43595) SGN-E542084+ PGS (43854 43595) SGN-E336814- PGS (43854 43606) SGN-E373117- PGS (43831 43606) SGN-E373116+ PGS (43854 43642) SGN-E298638- PGS (43851 43668) SGN-E368629- PGS (43832 43668) SGN-E238551- PGS (43854 43672) SGN-E352844- 3-phase translation of AGS-1 (-strand): . . . . . . 43982 TGTCACGACCCAAATCGGGCCACGACTAGCACCCACACTTACCCTCCTGTGTGAGCGAAC C H D P N R A T T S T H T Y P P V - A N V T T Q I G P R L A P T L T L L C E R T S R P K S G H D - H P H L P S C V S E . . . . . . 43922 CAACCAAATCTAAATCTTAACATTTCAATGTACTATCAACATAAAGTAATGCGGAAGACT Q P N L N L N I S M Y Y Q H K V M R K T N Q I - I L T F Q C T I N I K - C G R L P T K S K S - H F N V L S T - S N A E D . . . . . . 43862 TAAACTCATTAATAAAAACCAATTCAATAACTATTATTTCTCAAAATCTGGAAGTCATCA - T H - - K P I Q - L L F L K I W K S S K L I N K N Q F N N Y Y F S K S G S H H L N S L I K T N S I T I I S Q N L E V I . . . . . . 43802 TCACAAGAACATCTAGTCCAAATTACTAAATCTAAGAGTTTCTAAGAAGCAAAAAATACA S Q E H L V Q I T K S K S F - E A K N T H K N I - S K L L N L R V S K K Q K I H I T R T S S P N Y - I - E F L R S K K Y . . . . . . 43742 TGAAAGCTAGTCCATGCCAGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCC - K L V H A R T S R H Q D M K R K I Q S E S - S M P E L Q G I K T - R G R S S P M K A S P C Q N F K A S R H E E E D P V . . . . . . 43682 AAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAGTGAAGACTGGCTAGAGTTACTG K L E A L A H P D I R S S E D W L E L L S - K H - L T L I S G V V K T G - S Y C Q A R S I S S P - Y P E - - R L A R V T . . . . . . 43622 TTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAA L S R R - R H V C C T P Q I T K K K T - - V E D D G T F A A L H K - Q R R K H K V E S K M T A R L L H S T N N K E E N I . . . . . . 43562 AAGTAGGGGGTCAGTACAAACACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAG K - G V S T N T S T E - V S S A N S K - S R G S V Q T Q V L S R Y H R P T Q N R K V G G Q Y K H K Y - V G I I G Q L K I . . . . . . 43502 AAAACAGTATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCATTT K T V Y T K - Y H K I N Y D T Q H V A F K Q Y I P S N I I K S T M I L N M - H L E N S I Y Q V I S - N Q L - Y S T C S I . . . . . . 43442 ACAATTACCATAACCCTTGGTTACAACACCAAGCTCGTCAATGAGGACTCACGCCTCCTC T I T I T L G Y N T K L V N E D S R L L Q L P - P L V T T P S S S M R T H A S S Y N Y H N P W L Q H Q A R Q - G L T P P . . . . . . 43382 ATCATACTCATTTGGGATTTAGGTTCATTAGATTGAGTATATTAACATCTTTCAGGATTC I I L I W D L G S L D - V Y - H L S G F S Y S F G I - V H - I E Y I N I F Q D S H H T H L G F R F I R L S I L T S F R I . . . . . . 43322 ATTATCTTTATTTCTCTCGTGTCGGTACGTGACACTCCGCTCCTCATATACTATCCTGGT I I F I S L V S V R D T P L L I Y Y P G L S L F L S C R Y V T L R S S Y T I L V H Y L Y F S R V G T - H S A P H I L S W . . . . . . 43262 GTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACGCAAT V G T - H S D P H I L S W Y R N V A R N S E R D T P I L I Y Y P G T G T W H A I C R N V T L R S S Y T I L V P E R G T Q . . . . . . 43202 CCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACC P Y S I L V S E R D T P I L I Y Y P G T H I L S W C R N V T L R S S Y T I L V P S I F Y P G V G T - H S D P H I L S W Y . . . . . . 43142 GGAACGTGGCACCCGATCCATATTCTATTCTGGTGTCGGAACGTGACACTCCGATCCTCA G T W H P I H I L F W C R N V T L R S S E R G T R S I F Y S G V G T - H S D P H R N V A P D P Y S I L V S E R D T P I L . : . . . . . 43082 TATAC : ATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTAC Y T : F Y P G V G T - H S D P H I L S W Y I : H S I L V S E R D T P I L I Y Y P G T I Y : I L S W C R N V T L R S S Y T I L V . . . . . . 42989 CGGAACGTGGTACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTA R N V V P D P L I S F Y Q F I K P S F L G T W Y P I P - S P S I N S S S L L S Y P E R G T R S P N L L L S I H Q A F F L . . . : . . . 42929 CCAAAGACATCATCAATCTCATTATTTTA : ATTAACAAAGAGATTAGGGTTTTTCAAGATT P K T S S I S L F - : L T K R L G F F K I Q R H H Q S H Y F : N - Q R D - G F S R F T K D I I N L I I L : I N K E I R V F Q D . . . . . . 42834 TGGGATTCAATAACTTCATCATGCTTATATAATCACAATTATATAATTACATTCATGCAA W D S I T S S C L Y N H N Y I I T F M Q G I Q - L H H A Y I I T I I - L H S C K L G F N N F I M L I - S Q L Y N Y I H A . . . . . . 42774 GCATACAATTAAGCACATAGCAGGGTTTACAACATTATCAATACATATCATTCGCTATTA A Y N - A H S R V Y N I I N T Y H S L L H T I K H I A G F T T L S I H I I R Y - S I Q L S T - Q G L Q H Y Q Y I S F A I . . . . . . 42714 AGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGACTAATGAT R V Y Y E Y R K R N H N L P P P K T N D E F T T N I V R E T I T Y L H R R L M I K S L L R I S - E K P - P T S T E D - - . . . . . . 42654 CAAGCAAGAATTTTCCAAAGCCTTGTGTTTTTCCTCTTCGTTCGTCTCTCTCTATCGATT Q A R I F Q S L V F F L F V R L S L S I K Q E F S K A L C F S S S F V S L Y R F S S K N F P K P C V F P L R S S L S I D . . . . . . 42594 CTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCT L L L S L S V L F F F L F K P S F F Y P S F S L F L F F S F S Y S N P L S F T L S P S L S F C S F L F L I Q T L F L L P . . . . . . 42534 AATTAGCATATAATTAAGAATAAAATGTGGCAATAATAACCCATTAATTAACTTAAGGTT N - H I I K N K M W Q - - P I N - L K V I S I - L R I K C G N N N P L I N L R L - L A Y N - E - N V A I I T H - L T - G . . . . . . 42474 ACCTCTTTTAACCCCCAAGAAATTTAGTCATTAATATAAACCCACGAAATATATAATTAT T S F N P Q E I - S L I - T H E I Y N Y P L L T P K K F S H - Y K P T K Y I I I Y L F - P P R N L V I N I N P R N I - L . . . . . . 42414 AGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCTGACTCCGACTGGGA S R N S P K R P F K T - P E I - L R L G A G I V Q N A P L K L N Q K S D S D W D - Q E - S K T P L - N L T R N L T P T G . . . . . . 42354 TTACGCAACCTGTGACGGCCCGTCGCGCCTGCGACGGTTCGTCATGCAGGTTCGTCAGAG L R N L - R P V A P A T V R H A G S S E Y A T C D G P S R L R R F V M Q V R Q R I T Q P V T A R R A C D G S S C R F V R . : . . . . . 42294 ACTCG : AGTTGAAGTGTTTTGAAACGGTGGATCACGACGGTTCGTCGTGCCTGTGACGGTC T R : V E V F - N G G S R R F V V P V T V L : E L K C F E T V D H D G S S C L - R S D S : S - S V L K R W I T T V R R A C D G . . . . . . 42132 CGTCCTGCAGGTCCGTCACAGAGTTCAGAGAGTCGATTTTAGCACCCAAATTTCAGAATT R P A G P S Q S S E S R F - H P N F R I V L Q V R H R V Q R V D F S T Q I S E F P S C R S V T E F R E S I L A P K F Q N . . . . . . 42072 TCTAAGTGTTTTGGGACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGTTCCGTCGT S K C F G T R H P R R S V V P M T F R R L S V L G R D T L D G P S C P - R S V V F - V F W D E T P S T V R R A H D V P S . . . . . . 42012 GGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAA G F R R L S L F F Q K - N L L L K M T K G S V V S A Y F S R N K I C C S K - L N W V P S S Q P I F P E I K S A A Q N D - . . : . . 41952 CAGGTCGTTAC : ATTTTTTTACTTATCTACTATACTATTAT Q V V T : F F Y L S T I L L R S L : H F F T Y L L Y Y Y T G R Y : I F L L I Y Y T I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-1_PPS_1 (43173 43078,43044 42901,42865 42803) (frame '0'; 300 bp, 100 residues) 1 HSDPHILSWY RNVAPDPYSI LVSERDTPIL IYILSWCRNV TLRSSYTILV PERGTRSPNL 61 LLSIHQAFFL TKDIINLIIL INKEIRVFQD LGFNNFIMLI - >C09HBa0278J12.1-_PGL-8_AGS-1_PPS_2 (42762 42529) (frame '1'; 231 bp, 77 residues) 1 AHSRVYNIIN TYHSLLRVYY EYRKRNHNLP PPKTNDQARI FQSLVFFLFV RLSLSILLLS 61 LSVLFFFLFK PSFFYPN- >C09HBa0278J12.1-_PGL-8_AGS-1_PPS_3 (42440 42290,42187 42138) (frame '2'; 198 bp, 66 residues) 1 YKPTKYIIIA GIVQNAPLKL NQKSDSDWDY ATCDGPSRLR RFVMQVRQRL ELKCFETVDH 61 DGSSCL- AGS-2 (43531 43084,43046 42863,41949 41920,41372 41344) SCR (e 0.788 d 0.000 a 0.000,e 0.772 d 0.000 a 0.552,e 0.500 d 0.702 a 0.000,e 0.759) Exon 1 43531 43084 ( 448 n); score: 0.788 Intron 1 43083 43047 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 2 43046 42863 ( 184 n); score: 0.772 Intron 2 42862 41950 ( 913 n); Pd: 0.000 Pa: 0.552 Exon 3 41949 41920 ( 30 n); score: 0.500 Intron 3 41919 41373 ( 547 n); Pd: 0.702 Pa: 0.000 Exon 4 41372 41344 ( 29 n); score: 0.759 PGS (43531 43084,43046 42863,41949 41920,41372 41344) SGN-E349977- 3-phase translation of AGS-2 (-strand): . . . . . . 43531 AGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAAA S R Y H R P T Q N R K Q Y I P S N I I K V G I I G Q L K I E N S I Y Q V I S - N - V S S A N S K - K T V Y T K - Y H K . . . . . . 43471 TCAACTATGATACTCAACATGTAGCATTTACAATTACCATAACCCTTGGTTACAACACCA S T M I L N M - H L Q L P - P L V T T P Q L - Y S T C S I Y N Y H N P W L Q H Q I N Y D T Q H V A F T I T I T L G Y N T . . . . . . 43411 AGCTCGTCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGATTTAGGTTCATTAG S S S M R T H A S S S Y S F G I - V H - A R Q - G L T P P H H T H L G F R F I R K L V N E D S R L L I I L I W D L G S L . . . . . . 43351 ATTGAGTATATTAACATCTTTCAGGATTCATTATCTTTATTTCTCTCGTGTCGGTACGTG I E Y I N I F Q D S L S L F L S C R Y V L S I L T S F R I H Y L Y F S R V G T - D - V Y - H L S G F I I F I S L V S V R . . . . . . 43291 ACACTCCGCTCCTCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATAC T L R S S Y T I L V S E R D T P I L I Y H S A P H I L S W C R N V T L R S S Y T D T P L L I Y Y P G V G T - H S D P H I . . . . . . 43231 TATCCTGGTACCGGAACGTGGCACGCAATCCATATTCTATCCTGGTGTCGGAACGTGACA Y P G T G T W H A I H I L S W C R N V T I L V P E R G T Q S I F Y P G V G T - H L S W Y R N V A R N P Y S I L V S E R D . . . . . . 43171 CTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATTCT L R S S Y T I L V P E R G T R S I F Y S S D P H I L S W Y R N V A P D P Y S I L T P I L I Y Y P G T G T W H P I H I L F . . . : . . . 43111 GGTGTCGGAACGTGACACTCCGATCCTC : ATATTCTATCCTGGTGTCGGAACGTGACACTC G V G T - H S D P : H I L S W C R N V T L V S E R D T P I L : I F Y P G V G T - H S W C R N V T L R S S : Y S I L V S E R D T . . . . . . 43014 CGATCCTCATATACTATCCTGGTACCGGAACGTGGTACCCGATCCCCTAATCTCCTTCTA R S S Y T I L V P E R G T R S P N L L L D P H I L S W Y R N V V P D P L I S F Y P I L I Y Y P G T G T W Y P I P - S P S . . . . . . 42954 TCAATTCATCAAGCCTTCTTTCTTACCAAAGACATCATCAATCTCATTATTTTAGTTCAT S I H Q A F F L T K D I I N L I I L V H Q F I K P S F L P K T S S I S L F - F I I N S S S L L S Y Q R H H Q S H Y F S S . . . . : . . 42894 TACGCCTTCTTTTATACCAAGGCCTCATCATT : GTCGTTACACAAGCTCCAAAAATCTTTA Y A F F Y T K A S S L : S L H K L Q K S L T P S F I P R P H H : C R Y T S S K N L - L R L L L Y Q G L I I : V V T Q A P K I F . : . . . 41921 GG : TTTCCTTCAAAAGTTTGGAATTGTCAATA G : F L Q K F G I V N : V S F K S L E L S I R : F P S K V W N C Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-2_PPS_1 (43096 43084,43046 42863,41949 41920,41372 41345) (frame '1'; 255 bp, 85 residues) 1 HSDPHILSWC RNVTLRSSYT ILVPERGTRS PNLLLSIHQA FFLTKDIINL IILVHYAFFY 61 TKASSLSLHK LQKSLGFLQK FGIVN >C09HBa0278J12.1-_PGL-8_AGS-2_PPS_2 (43351 43097) (frame '1'; 252 bp, 84 residues) 1 IEYINIFQDS LSLFLSCRYV TLRSSYTILV SERDTPILIY YPGTGTWHAI HILSWCRNVT 61 LRSSYTILVP ERGTRSIFYS GVGT- >C09HBa0278J12.1-_PGL-8_AGS-2_PPS_3 (43250 43084,43046 42965) (frame '0'; 246 bp, 82 residues) 1 HSDPHILSWY RNVARNPYSI LVSERDTPIL IYYPGTGTWH PIHILFWCRN VTLRSSYSIL 61 VSERDTPILI YYPGTGTWYP IP- AGS-3 (43187 43084,43038 43007,42967 42290,42185 41941) SCR (e 0.707 d 0.000 a 0.000,e 0.844 d 0.000 a 0.000,e 0.879 d 0.900 a 0.000,e 0.812) Exon 1 43187 43084 ( 104 n); score: 0.707 Intron 1 43083 43039 ( 45 n); Pd: 0.000 Pa: 0.000 Exon 2 43038 43007 ( 32 n); score: 0.844 Intron 2 43006 42968 ( 39 n); Pd: 0.000 Pa: 0.000 Exon 3 42967 42290 ( 678 n); score: 0.879 Intron 3 42289 42186 ( 104 n); Pd: 0.900 Pa: 0.000 Exon 4 42185 41941 ( 245 n); score: 0.812 PGS (42600 42290,42185 41941) SGN-E231589+ PGS (42555 42290,42185 42061) SGN-E356257- PGS (42922 42577) SGN-E578076- PGS (43187 43084,43038 43007,42967 42652) SGN-E347579- PGS (42983 42660) SGN-E357559- 3-phase translation of AGS-3 (-strand): . . . . . . 43187 GTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCG V S E R D T P I L I Y Y P G T G T W H P C R N V T L R S S Y T I L V P E R G T R V G T - H S D P H I L S W Y R N V A P . . . . . : . 43127 ATCCATATTCTATTCTGGTGTCGGAACGTGACACTCCGATCCTC : TCCTGGTGTCGGAACG I H I L F W C R N V T L R S S : P G V G T S I F Y S G V G T - H S D P : L L V S E R D P Y S I L V S E R D T P I L : S W C R N . . : . . . . 43022 TGACACTCCGATCCTC : TAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAAG - H S D P : L I S F Y Q F I K P S F L P K D T P I L : - S P S I N S S S L L S Y Q R V T L R S S : N L L L S I H Q A F F L T K . . . . . . 42923 ACATCATCAATCTCATTATTTTAGTTCATTACGCCTTCTTTTATACCAAGGCCTCATCAT T S S I S L F - F I T P S F I P R P H H H H Q S H Y F S S L R L L L Y Q G L I I D I I N L I I L V H Y A F F Y T K A S S . . . . . . 42863 TAACAAAGAGATTAGGGTTTTTCAAGATTTGGGATTCAATAACTTCATCATGCTTATATA - Q R D - G F S R F G I Q - L H H A Y I N K E I R V F Q D L G F N N F I M L I - L T K R L G F F K I W D S I T S S C L Y . . . . . . 42803 ATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACA I T I I - L H S C K H T I K H I A G F T S Q L Y N Y I H A S I Q L S T - Q G L Q N H N Y I I T F M Q A Y N - A H S R V Y . . . . . . 42743 ACATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACC T L S I H I I R Y - E F T T N I V R E T H Y Q Y I S F A I K S L L R I S - E K P N I I N T Y H S L L R V Y Y E Y R K R N . . . . . . 42683 ATAACCTACCTCCACCGAAGACTAATGATCAAGCAAGAATTTTCCAAAGCCTTGTGTTTT I T Y L H R R L M I K Q E F S K A L C F - P T S T E D - - S S K N F P K P C V F H N L P P P K T N D Q A R I F Q S L V F . . . . . . 42623 TCCTCTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTT S S S F V S L Y R F S F S L F L F F S F P L R S S L S I D S P S L S F C S F L F F L F V R L S L S I L L L S L S V L F F . . . . . . 42563 TCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAATGTGGC S Y S N P L S F T L I S I - L R I K C G L I Q T L F L L P - L A Y N - E - N V A F L F K P S F F Y P N - H I I K N K M W . . . . . . 42503 AATAATAACCCATTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAAATTTAGTCAT N N N P L I N L R L P L L T P K K F S H I I T H - L T - G Y L F - P P R N L V I Q - - P I N - L K V T S F N P Q E I - S . . . . . . 42443 TAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAA - Y K P T K Y I I I A G I V Q N A P L K N I N P R N I - L - Q E - S K T P L - N L I - T H E I Y N Y S R N S P K R P F K . . . . . . 42383 CTTAACCAGAAATCTGACTCCGACTGGGATTACGCAACCTGTGACGGCCCGTCGCGCCTG L N Q K S D S D W D Y A T C D G P S R L L T R N L T P T G I T Q P V T A R R A C T - P E I - L R L G L R N L - R P V A P . . . . : . . 42323 CGACGGTTCGTCATGCAGGTTCGTCAGAGACTCG : TTGAAGTGTTTTGAAACGGTGGATCA R R F V M Q V R Q R L : V E V F - N G G S D G S S C R F V R D S : L K C F E T V D H A T V R H A G S S E T R : - S V L K R W I . . . . . . 42159 CGACGGTTCGTCGTGCCTGTGACGGTCCGTCCTGCAGGTCCGTCACAGAGTTCAGAGAGT R R F V V P V T V R P A G P S Q S S E S D G S S C L - R S V L Q V R H R V Q R V T T V R R A C D G P S C R S V T E F R E . . . . . . 42099 CGATTTTAGCACCCAAATTTCAGAATTTCTAAGTGTTTTGGGACGAGACACCCTCGACGG R F - H P N F R I S K C F G T R H P R R D F S T Q I S E F L S V L G R D T L D G S I L A P K F Q N F - V F W D E T P S T . . . . . . 42039 TCCGTCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTATTTTTCCAGAAA S V V P M T F R R G F R R L S L F F Q K P S C P - R S V V G S V V S A Y F S R N V R R A H D V P S W V P S S Q P I F P E . . . . 41979 TAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACA - N L L L K M T K Q V V T K I C C S K - L N R S L I K S A A Q N D - T G R Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-3_PPS_1 (43173 43084,43038 43007,42967 42763) (frame '0'; 324 bp, 108 residues) 1 HSDPHILSWY RNVAPDPYSI LVSERDTPIL SWCRNVTLRS SNLLLSIHQA FFLTKDIINL 61 IILVHYAFFY TKASSLTKRL GFFKIWDSIT SSCLYNHNYI ITFMQAYN- >C09HBa0278J12.1-_PGL-8_AGS-3_PPS_2 (42762 42529) (frame '0'; 231 bp, 77 residues) 1 AHSRVYNIIN TYHSLLRVYY EYRKRNHNLP PPKTNDQARI FQSLVFFLFV RLSLSILLLS 61 LSVLFFFLFK PSFFYPN- AGS-4 (42489 42306,42235 42192,42158 41997) SCR (e 0.777 d 0.000 a 0.000,e 0.636 d 0.000 a 0.000,e 0.864) Exon 1 42489 42306 ( 184 n); score: 0.777 Intron 1 42305 42236 ( 70 n); Pd: 0.000 Pa: 0.000 Exon 2 42235 42192 ( 44 n); score: 0.636 Intron 2 42191 42159 ( 33 n); Pd: 0.000 Pa: 0.000 Exon 3 42158 41997 ( 162 n); score: 0.864 PGS (42489 42306,42235 42192,42158 41997) SGN-E242274- 3-phase translation of AGS-4 (-strand): . . . . . . 42489 AATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAAATTTAGTCATTAATATAAACCCAC N - L K V T S F N P Q E I - S L I - T H I N L R L P L L T P K K F S H - Y K P T L T - G Y L F - P P R N L V I N I N P . . . . . . 42429 GAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATC E I Y N Y S R N S P K R P F K T - P E I K Y I I I A G I V Q N A P L K L N Q K S R N I - L - Q E - S K T P L - N L T R N . . . . . . 42369 TGACTCCGACTGGGATTACGCAACCTGTGACGGCCCGTCGCGCCTGCGACGGTTCGTCAT - L R L G L R N L - R P V A P A T V R H D S D W D Y A T C D G P S R L R R F V M L T P T G I T Q P V T A R R A C D G S S . : . . . . : . 42309 GCAG : CTTCCGTCACGACGTTCAGAGAATCGTTCCCTGTACCAAATTCT : GACGGTTCGTCG A : A S V T T F R E S F P V P N S : D G S S Q : L P S R R S E N R S L Y Q I L : T V R R C S : F R H D V Q R I V P C T K F : - R F V . . . . . . 42146 TGCCTGTGACGGTCCGTCCTGCAGGTCCGTCACAGAGTTCAGAGAGTCGATTTTAGCACC C L - R S V L Q V R H R V Q R V D F S T A C D G P S C R S V T E F R E S I L A P V P V T V R P A G P S Q S S E S R F - H . . . . . . 42086 CAAATTTCAGAATTTCTAAGTGTTTTGGGACGAGACACCCTCGACGGTCCGTCGTGCCCA Q I S E F L S V L G R D T L D G P S C P K F Q N F - V F W D E T P S T V R R A H P N F R I S K C F G T R H P R R S V V P . . . 42026 TGACGTTCCGTCGTGGGTTCCGTCGTCTCA - R S V V G S V V S D V P S W V P S S M T F R R G F R R L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-4_PPS_1 (42440 42306,42235 42192,42158 42068) (frame '2'; 267 bp, 89 residues) 1 YKPTKYIIIA GIVQNAPLKL NQKSDSDWDY ATCDGPSRLR RFVMQLPSRR SENRSLYQIL 61 TVRRACDGPS CRSVTEFRES ILAPKFQNF- AGS-5 (43863 43606,43327 42660) SCR (e 0.835 d 0.999 a 0.854,e 0.800) Exon 1 43863 43606 ( 258 n); score: 0.835 Intron 1 43605 43328 ( 278 n); Pd: 0.999 Pa: 0.854 Exon 2 43327 42660 ( 668 n); score: 0.800 PGS (43324 42660) SGN-E349726- PGS (43863 43606,43327 43300) SGN-E370357+ 3-phase translation of AGS-5 (-strand): . . . . . . 43863 TTAAACTCATTAATAAAAACCAATTCAATAACTATTATTTCTCAAAATCTGGAAGTCATC L N S L I K T N S I T I I S Q N L E V I - T H - - K P I Q - L L F L K I W K S S K L I N K N Q F N N Y Y F S K S G S H . . . . . . 43803 ATCACAAGAACATCTAGTCCAAATTACTAAATCTAAGAGTTTCTAAGAAGCAAAAAATAC I T R T S S P N Y - I - E F L R S K K Y S Q E H L V Q I T K S K S F - E A K N T H H K N I - S K L L N L R V S K K Q K I . . . . . . 43743 ATGAAAGCTAGTCCATGCCAGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTC M K A S P C Q N F K A S R H E E E D P V - K L V H A R T S R H Q D M K R K I Q S H E S - S M P E L Q G I K T - R G R S S . . . . . . 43683 CAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAGTGAAGACTGGCTAGAGTTACT Q A R S I S S P - Y P E - - R L A R V T K L E A L A H P D I R S S E D W L E L L P S - K H - L T L I S G V V K T G - S Y . . : . . . . 43623 GTTGAGTCGAAGATGACG : GATTCATTATCTTTATTTCTCTCGTGTCGGTACGTGACACTC V E S K M T : D S L S L F L S C R Y V T L L S R R - R : I H Y L Y F S R V G T - H S C - V E D D : G F I I F I S L V S V R D T . . . . . . 43285 CGCTCCTCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCT R S S Y T I L V S E R D T P I L I Y Y P A P H I L S W C R N V T L R S S Y T I L P L L I Y Y P G V G T - H S D P H I L S . . . . . . 43225 GGTACCGGAACGTGGCACGCAATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGA G T G T W H A I H I L S W C R N V T L R V P E R G T Q S I F Y P G V G T - H S D W Y R N V A R N P Y S I L V S E R D T P . . . . . . 43165 TCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATTCTGGTGTC S S Y T I L V P E R G T R S I F Y S G V P H I L S W Y R N V A P D P Y S I L V S I L I Y Y P G T G T W H P I H I L F W C . . . . . . 43105 GGAACGTGACACTCCGATCCTCATATACTATCATGGTACCGGAACGTGGCACCCGATCCA G T - H S D P H I L S W Y R N V A P D P E R D T P I L I Y Y H G T G T W H P I H R N V T L R S S Y T I M V P E R G T R S . . . . . . 43045 TATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGA Y S I L V S E R D T P I L I Y Y P G T G I L S W C R N V T L R S S Y T I L V P E I F Y P G V G T - H S D P H I L S W Y R . . . . . . 42985 ACGTGGTACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAA T W Y P I P - S P S I N S S S L L S Y Q R G T R S P N L L L S I H Q A F F L T K N V V P D P L I S F Y Q F I K P S F L P . . . . . . 42925 AGACATCATCAATCTCATTATTTTAGTTCATTACGCCTTCTTTTATACCAAGGCCTCATC R H H Q S H Y F S S L R L L L Y Q G L I D I I N L I I L V H Y A F F Y T K A S S K T S S I S L F - F I T P S F I P R P H . . . . . . 42865 ATTAACAAAGAGATTAGGGTTTTTCAAGATTTGGGATTCAATAACTTCATCATGCTTATA I N K E I R V F Q D L G F N N F I M L I L T K R L G F F K I W D S I T S S C L Y H - Q R D - G F S R F G I Q - L H H A Y . . . . . . 42805 TAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTA - S Q L Y N Y I H A S I Q L S T - Q G L N H N Y I I T F M Q A Y N - A H S R V Y I I T I I - L H S C K H T I K H I A G F . . . . . . 42745 CAACATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAA Q H Y Q Y I S F A I K S L L R I S - E K N I I N T Y H S L L R V Y Y E Y R K R N T T L S I H I I R Y - E F T T N I V R E . . . 42685 CCATAACCTACCTCCACCGAAGACTA P - P T S T E D H N L P P P K T T I T Y L H R R L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-5_PPS_1 (43173 42763) (frame '2'; 408 bp, 136 residues) 1 HSDPHILSWY RNVAPDPYSI LVSERDTPIL IYYHGTGTWH PIHILSWCRN VTLRSSYTIL 61 VPERGTRSPN LLLSIHQAFF LTKDIINLII LVHYAFFYTK ASSLTKRLGF FKIWDSITSS 121 CLYNHNYIIT FMQAYN- AGS-6 (43497 43277,43237 43171,43130 42966,42914 42848) SCR (e 0.851 d 0.000 a 0.000,e 0.940 d 0.000 a 0.000,e 0.933 d 0.900 a 0.000,e 0.843) Exon 1 43497 43277 ( 221 n); score: 0.851 Intron 1 43276 43238 ( 39 n); Pd: 0.000 Pa: 0.000 Exon 2 43237 43171 ( 67 n); score: 0.940 Intron 2 43170 43131 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 3 43130 42966 ( 165 n); score: 0.933 Intron 3 42965 42915 ( 51 n); Pd: 0.900 Pa: 0.000 Exon 4 42914 42848 ( 67 n); score: 0.843 PGS (43497 43277,43237 43171,43130 42966,42914 42848) SGN-E242359- 3-phase translation of AGS-6 (-strand): . . . . . . 43497 AGTATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCATTTACAAT S I Y Q V I S - N Q L - Y S T C S I Y N V Y T K - Y H K I N Y D T Q H V A F T I Y I P S N I I K S T M I L N M - H L Q . . . . . . 43437 TACCATAACCCTTGGTTACAACACCAAGCTCGTCAATGAGGACTCACGCCTCCTCATCAT Y H N P W L Q H Q A R Q - G L T P P H H T I T L G Y N T K L V N E D S R L L I I L P - P L V T T P S S S M R T H A S S S . . . . . . 43377 ACTCATTTGGGATTTAGGTTCATTAGATTGAGTATATTAACATCTTTCAGGATTCATTAT T H L G F R F I R L S I L T S F R I H Y L I W D L G S L D - V Y - H L S G F I I Y S F G I - V H - I E Y I N I F Q D S L . . . . . : . 43317 CTTTATTTCTCTCGTGTCGGTACGTGACACTCCGCTCCTCA : ATATACTATCCTGGTACCG L Y F S R V G T - H S A P Q : Y T I L V P F I S L V S V R D T P L L : N I L S W Y R S L F L S C R Y V T L R S S : I Y Y P G T . . . . . : . 43218 GAACGTGGCACGCAATCCATATTCTATCCTGGTGTCGGAACGTGACAC : CCGATCCATATT E R G T Q S I F Y P G V G T - H : P I H I N V A R N P Y S I L V S E R D T : R S I F G T W H A I H I L S W C R N V T : P D P Y . . . . . . 43118 CTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCATGGTACCGGAACGT L F W C R N V T L R S S Y T I M V P E R Y S G V G T - H S D P H I L S W Y R N V S I L V S E R D T P I L I Y Y H G T G T . . . . . . 43058 GGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTA G T R S I F Y P G V G T - H S D P H I L A P D P Y S I L V S E R D T P I L I Y Y W H P I H I L S W C R N V T L R S S Y T . . . . : . . 42998 TCCTGGTACCGGAACGTGGTACCCGATCCCCTA : ATCTCATTATTTTAGTTCATTACGCCT S W Y R N V V P D P L : I S L F - F I T P P G T G T W Y P I P - : S H Y F S S L R L I L V P E R G T R S P : N L I I L V H Y A . . . . 42887 TCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGG S F I P R P H H - Q R D - L L Y Q G L I I N K E I R F F Y T K A S S L T K R L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-6_PPS_1 (43351 43277,43237 43171,43130 42966,42914 42850) (frame '0'; 372 bp, 124 residues) 1 IEYINIFQDS LSLFLSCRYV TLRSSIYYPG TGTWHAIHIL SWCRNVTPDP YSILVSERDT 61 PILIYYHGTG TWHPIHILSW CRNVTLRSSY TILVPERGTR SPNLIILVHY AFFYTKASSL 121 TKRL AGS-7 (43729 43313,43195 42966,42914 42858) SCR (e 0.826 d 0.000 a 0.000,e 0.726 d 0.900 a 0.000,e 0.895) Exon 1 43729 43313 ( 417 n); score: 0.826 Intron 1 43312 43196 ( 117 n); Pd: 0.000 Pa: 0.000 Exon 2 43195 42966 ( 230 n); score: 0.726 Intron 2 42965 42915 ( 51 n); Pd: 0.900 Pa: 0.000 Exon 3 42914 42858 ( 57 n); score: 0.895 PGS (43729 43313,43195 42966,42914 42858) SGN-E241789+ 3-phase translation of AGS-7 (-strand): . . . . . . 43729 ATGCCAGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCAT M P E L Q G I K T - R G R S S P S - K H C Q N F K A S R H E E E D P V Q A R S I A R T S R H Q D M K R K I Q S K L E A . . . . . . 43669 TAGCTCACCCTGATATCCGGAGTAGTGAAGACTGGCTAGAGTTACTGTTGAGTCGAAGAT - L T L I S G V V K T G - S Y C - V E D S S P - Y P E - - R L A R V T V E S K M L A H P D I R S S E D W L E L L L S R R . . . . . . 43609 GACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCA D G T F A A L H K - Q R R K H K S R G S T A R L L H S T N N K E E N I K V G G Q - R H V C C T P Q I T K K K T - K - G V . . . . . . 43549 GTACAAACACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATA V Q T Q V L S R Y H R P T Q N R K Q Y I Y K H K Y - V G I I G Q L K I E N S I Y S T N T S T E - V S S A N S K - K T V Y . . . . . . 43489 CCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCATTTACAATTACCATAA P S N I I K S T M I L N M - H L Q L P - Q V I S - N Q L - Y S T C S I Y N Y H N T K - Y H K I N Y D T Q H V A F T I T I . . . . . . 43429 CCCTTGGTTACAACACCAAGCTCGTCAATGAGGACTCACGCCTCCTCATCATACTCATTT P L V T T P S S S M R T H A S S S Y S F P W L Q H Q A R Q - G L T P P H H T H L T L G Y N T K L V N E D S R L L I I L I . . . . . . : 43369 GGGATTTAGGTTCATTAGATTGAGTATATTAACATCTTTCAGGATTCATTATCTTTA : CTA G I - V H - I E Y I N I F Q D S L S L : L G F R F I R L S I L T S F R I H Y L Y : Y W D L G S L D - V Y - H L S G F I I F : T . . . . . . 43192 TCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGC S W C R N V T L R S S Y T I L V P E R G P G V G T - H S D P H I L S W Y R N V A I L V S E R D T P I L I Y Y P G T G T W . . . . . . 43132 ACCCGATCCATATTCTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCA T R S I F Y S G V G T - H S D P H I L S P D P Y S I L V S E R D T P I L I Y Y H H P I H I L F W C R N V T L R S S Y T I . . . . . . 43072 TGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCG W Y R N V A P D P Y S I L V S E R D T P G T G T W H P I H I L S W C R N V T L R M V P E R G T R S I F Y P G V G T - H S . . . . . : . 43012 ATCCTCATATACTATCCTGGTACCGGAACGTGGTACCCGATCCCCTA : ATCTCATTATTTT I L I Y Y P G T G T W Y P I P - : S H Y F S S Y T I L V P E R G T R S P : N L I I L D P H I L S W Y R N V V P D P L : I S L F . . . . . 42901 AGTTCATTACGCCTTCTTTTATACCAAGGCCTCATCATTAACAA S S L R L L L Y Q G L I I N V H Y A F F Y T K A S S L T - F I T P S F I P R P H H - Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-8_AGS-7_PPS_1 (43173 42966,42914 42859) (frame '2'; 264 bp, 88 residues) 1 HSDPHILSWY RNVAPDPYSI LVSERDTPIL IYYHGTGTWH PIHILSWCRN VTLRSSYTIL 61 VPERGTRSPN LIILVHYAFF YTKASSLT PGL 9 (+ strand): 45396 45975 AGS-1 (45396 45975) SCR (e 1.000) Exon 1 45396 45975 ( 580 n); score: 1.000 PGS (45396 45975) SGN-E347597+ PGS (45470 45889) SGN-E338920+ 3-phase translation of AGS-1 (+strand): . . . . . . 45396 GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTA G N Y E Q D M P S V A L P L C I L L L L V T T N K I C L L - P F P Y A S S Y S Y - L R T R Y A F C S P S L M H P P T P . . . . . . 45456 CTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCG L Q L S A A S P V V G D E D S Q S P T A S N S L Q L H R S S A M R I L S P R R R T P T L C S F T G R R R - G F S V P D G . . . . . . 45516 TATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGG Y E I L Q E Y D F P V G I L P K G V T R M R F F R N T T F R - G Y F R R A - Q G V - D S S G I R L S G R D T S E G R N K . . . . . . 45576 TACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTC Y E L D K T T G N F A V Y F N K S C S F T N S T K Q R A I S P F T L T N R A V S V R T R Q N N G Q F R R L L - Q I V Q F . . . . . . 45636 AGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGAT S I S G Y N L K Y M S K I T G K I S K D A - A A I I S S I - V K L L V K S L R I Q H K R L - S Q V Y E - N Y W - N L - G . . . . . . 45696 CGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTC R L A N L K G V Q V K V L L F W I N I V D L R T - K A Y R - K C F C F G L I L S S T C E L E R R T G E S A F V L D - Y C . . . . . . 45756 GAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTT E V T R D G D D L D F S V G I A S A D F K L L V T A T I S I S P S V L L L L I L R S Y S - R R R S R F L R R Y C F C - F . . . . . . 45816 GCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCT A I D N F Y E S P Q C G C G F D C V N S Q L I T S M N R H S V D V D L I V S I L C N - - L L - I A T V W M W I - L C Q F . . . . . . 45876 GGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTA G E N G T G K F D L K L L I T S S - I V E K M A Q V S S I - S C L S L R L E S - W R K W H R - V R F E A A Y H F V L N R . . . . 45936 AATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT N F Q K S T V D - D V L G I F R N R L - I K M F - D K F S E I D C R L R C F R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-9_AGS-1_PPS_1 (45396 45929) (frame '1'; 531 bp, 177 residues) 1 GNYEQDMPSV ALPLCILLLL LQLSAASPVV GDEDSQSPTA YEILQEYDFP VGILPKGVTR 61 YELDKTTGNF AVYFNKSCSF SISGYNLKYM SKITGKISKD RLANLKGVQV KVLLFWINIV 121 EVTRDGDDLD FSVGIASADF AIDNFYESPQ CGCGFDCVNS GENGTGKFDL KLLITSS- 3-phase translation of AGS-1 (-strand): . . . . . . 45975 ATCCTAAAACATCTTAATCTACAGTCGATTTCTGAAAATTTACGATTCAAGACGAAGTGA I L K H L N L Q S I S E N L R F K T K - S - N I L I Y S R F L K I Y D S R R S D P K T S - S T V D F - K F T I Q D E V . . . . . . 45915 TAAGCAGCTTCAAATCGAACTTACCTGTGCCATTTTCTCCAGAATTGACACAATCAAATC - A A S N R T Y L C H F L Q N - H N Q I K Q L Q I E L T C A I F S R I D T I K S I S S F K S N L P V P F S P E L T Q S N . . . . . . 45855 CACATCCACACTGTGGCGATTCATAGAAGTTATCAATTGCAAAATCAGCAGAAGCAATAC H I H T V A I H R S Y Q L Q N Q Q K Q Y T S T L W R F I E V I N C K I S R S N T P H P H C G D S - K L S I A K S A E A I . . . . . . 45795 CGACGGAGAAATCGAGATCGTCGCCGTCACGAGTAACTTCGACAATATTAATCCAAAACA R R R N R D R R R H E - L R Q Y - S K T D G E I E I V A V T S N F D N I N P K Q P T E K S R S S P S R V T S T I L I Q N . . . . . . 45735 AAAGCACTTTCACCTGTACGCCTTTCAAGTTCGCAAGTCGATCCTTAGAGATTTTACCAG K A L S P V R L S S S Q V D P - R F Y Q K H F H L Y A F Q V R K S I L R D F T S K S T F T C T P F K F A S R S L E I L P . . . . . . 45675 TAATTTTACTCATATACTTGAGATTATAGCCGCTTATGCTGAAACTGCACGATTTGTTAA - F Y S Y T - D Y S R L C - N C T I C - N F T H I L E I I A A Y A E T A R F V K V I L L I Y L R L - P L M L K L H D L L . . . . . . 45615 AGTAAACGGCGAAATTGCCCGTTGTTTTGTCGAGTTCGTACCTTGTTACGCCCTTCGGAA S K R R N C P L F C R V R T L L R P S E V N G E I A R C F V E F V P C Y A L R K K - T A K L P V V L S S S Y L V T P F G . . . . . . 45555 GTATCCCTACCGGAAAGTCGTATTCCTGAAGAATCTCATACGCCGTCGGGGACTGAGAAT V S L P E S R I P E E S H T P S G T E N Y P Y R K V V F L K N L I R R R G L R I S I P T G K S Y S - R I S Y A V G D - E . . . . . . 45495 CCTCATCGCCGACGACCGGTGAAGCTGCAGAGAGTTGGAGTAGGAGTAGGAGGATGCATA P H R R R P V K L Q R V G V G V G G C I L I A D D R - S C R E L E - E - E D A - S S S P T T G E A A E S W S R S R R M H . . . . 45435 AGGGAAGGGCTACAGAAGGCATATCTTGTTCGTAGTTACC R E G L Q K A Y L V R S Y G K G Y R R H I L F V V T K G R A T E G I S C S - L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-9_AGS-1_PPS_1 (45968 45474) (frame '2'; 492 bp, 164 residues) 1 NILIYSRFLK IYDSRRSDKQ LQIELTCAIF SRIDTIKSTS TLWRFIEVIN CKISRSNTDG 61 EIEIVAVTSN FDNINPKQKH FHLYAFQVRK SILRDFTSNF THILEIIAAY AETARFVKVN 121 GEIARCFVEF VPCYALRKYP YRKVVFLKNL IRRRGLRILI ADDR- PGL 10 (+ strand): 47266 51147 AGS-1 (47266 47651,50924 51147) SCR (e 1.000 d 0.997 a 0.978,e 1.000) Exon 1 47266 47651 ( 386 n); score: 1.000 Intron 1 47652 50923 (3272 n); Pd: 0.997 Pa: 0.978 Exon 2 50924 51147 ( 224 n); score: 1.000 PGS (47266 47651,50924 51147) SGN-E308953+ PGS (47321 47635) SGN-E290047+ 3-phase translation of AGS-1 (+strand): . . . . . . 47266 TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAG S I R T P E N S V Y I L V G L A V S H - R - G H R K I Q C T S - W V L Q F R I R D K D T G K F S V H L S G S C S F A L . . . . . . 47326 AAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGC K G L I S L G I N R D S V G T - L K I G R V L S A - V S I E I R W V H S - K - A E G S Y Q L R Y Q S R F G G Y I A K N R . . . . . . 47386 TGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGG C Q A Y M G L V - K F C F C G - I L W R V K P T W G - C K N S V S V A E Y C G G L S S L H G V S V K I L F L W L N I V E . . . . . . 47446 TTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCA L L R M V T I L S S L L E L L R L A F P C - E W - Q S - V L C W N C F G - L S H V V K N G D N L E F S V G I A S A S F P . . . . . . 47506 CTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGAC L T I S W F V H N V D V D - I A I A M D L Q F L G L S T M W M W I E L Q - Q W T T Y N F L V C P Q C G C G L N C N S N G . . . . . . 47566 ATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGAT I F - R F E T V T L S L L F S C T Q K D Y S K D S K Q - P C L F C L A A H R R M H I L K I R N S N L V S S V - L H T E G . . . : . . . 47626 GATGGAGCCTGAGTTTACTGAAAGAG : ATACTTGCAACTCATGGAAAAGATCAGGTGACAT D G A - V Y - K R : Y L Q L M E K I R - H M E P E F T E R : D T C N S W K R S G D M - W S L S L L K E : I L A T H G K D Q V T . . . . . . 50958 GGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTG G C S V Q K A - N G H S P P S S S S - L V A V Y R K P E M V I L L L P P H H S C W L Q C T E S L K W S F S S F L L I I V . . . . . . 51018 CAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATT Q Y K K S K T H V F I Y I I V M L S T I N T K S R K L M C S F T L S L C Y L Q F A I Q K V E N S C V H L H Y R Y V I Y N . . . . . . 51078 TCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTC S S L L C H G Y K I F L K L L F I T R F R L C S V M D T K Y S - N C C L - R D S F V F A L S W I Q N I L E I A V Y N E I . 51138 TTTTCCATCA F S I F P S L F H Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-10_AGS-1_PPS_1 (47268 47609) (frame '0'; 339 bp, 113 residues) 1 DKDTGKFSVH LSGSCSFALE GSYQLRYQSR FGGYIAKNRL SSLHGVSVKI LFLWLNIVEV 61 VKNGDNLEFS VGIASASFPT YNFLVCPQCG CGLNCNSNGH ILKIRNSNLV SSV- >C09HBa0278J12.1+_PGL-10_AGS-1_PPS_2 (47591 47651,50924 51114) (frame '2'; 249 bp, 83 residues) 1 PCLFCLAAHR RMMEPEFTER DTCNSWKRSG DMVAVYRKPE MVILLLPPHH SCNTKSRKLM 61 CSFTLSLCYL QFRLCSVMDT KYS- AGS-2 (50650 51001) SCR (e 0.955) Exon 1 50650 51001 ( 352 n); score: 0.955 PGS (50650 51001) SGN-E318410+ 3-phase translation of AGS-2 (+strand): . . . . . . 50650 TGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAA C N N S L K L Q - V R N I N L - L N K - V I I H - N C N K - E I - T Y N - I N N - - F T K I A I S K K Y K P I T K - I . . . . . . 50710 TATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAG Y L V Q Y - K P L M H L Y S T L C E R Q I W S N T K N L - C T C I V H C V R D R I F G P I L K T F D A L V - Y I V - E T . . . . . . 50770 ACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAAC T C S H K I C L F P L P F L F L F C S N P A A T R S A Y F L C P F S F S S V A T D L Q P Q D L L I S S A L S L S L L - Q . . . . . . 50830 CTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATAT L W H F I V Y L T S A L P R K L E G R Y Y G T L - C I - L L H C L E N - K E D I P M A L Y S V F D F C I A S K I R R K I . . . . . . 50890 CTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCA L I H D S I C - V L A D T C N S W K R S - Y M T L F V E C L Q I L A T H G K D Q S N T - L Y L L S A C R Y L Q L M E K I . . . . . . 50950 GGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTC G D M V A V Y R K P E M V I L L L V T W L Q C T E S L K W S F S S F R - H G C S V Q K A - N G H S P P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 51001 GAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTT E G G E - P F Q A F C T L Q P C H L I F K E E N D H F R L S V H C N H V T - S F R R R M T I S G F L Y T A T M S P D L . . . . . . 50941 TCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTC S M S C K Y L Q A L N K - S H V L D I F P - V A S I C K H S T N R V M Y - I S S F H E L Q V S A S T Q Q I E S C I R Y L . . . . . . 50881 CTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTAC L L I F E A M Q K S N T L - S A I G C Y F - F S R Q C R S Q I H Y K V P - V A T P S N F R G N A E V K Y T I K C H R L L . . . . . . 50821 AGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCT R R E R E R A E E I S R S C G C R S V S E E K E K G Q R K - A D L V A A G L S L Q K R K R K G R G N K Q I L W L Q V C L . . . . . . 50761 CACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTAT H T M Y Y T S A S K V F S I G P N I I Y T Q C T I Q V H Q R F L V L D Q I L F I S H N V L Y K C I K G F - Y W T K Y Y L . . . . . . 50701 TTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACA L V I G L Y F L L I A I L V N Y Y - L - V Y I S Y L L Q F - - I I T F S Y R F I F L T Y C N F S E L L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-10_AGS-2_PPS_1 (50999 50724) (frame '0'; 273 bp, 91 residues) 1 RRRMTISGFL YTATMSPDLF HELQVSASTQ QIESCIRYLP SNFRGNAEVK YTIKCHRLLQ 61 KRKRKGRGNK QILWLQVCLS HNVLYKCIKG F- PGL 11 (- strand): 56948 54652 AGS-1 (56948 56655,56196 55744,54805 54780,54699 54652) SCR (e 1.000 d 0.981 a 1.000,e 1.000 d 0.000 a 0.000,e 0.833 d 0.000 a 0.000,e 0.729) Exon 1 56948 56655 ( 294 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 Pa: 1.000 Exon 2 56196 55744 ( 453 n); score: 1.000 Intron 2 55743 54806 ( 938 n); Pd: 0.000 Pa: 0.000 Exon 3 54805 54780 ( 26 n); score: 0.833 Intron 3 54779 54700 ( 80 n); Pd: 0.000 Pa: 0.000 Exon 4 54699 54652 ( 48 n); score: 0.729 PGS (56195 55744,54805 54780,54699 54652) SGN-E552893+ PGS (56008 55744,54805 54782) SGN-E551314+ PGS (56864 56655,56196 55739) SGN-E397839- PGS (56862 56655,56196 55739) SGN-E391990- PGS (56721 56655,56196 55739) SGN-E305337+ PGS (56008 55745) SGN-E551316+ PGS (55996 55745) SGN-E250207+ PGS (55992 55745) SGN-E308864+ PGS (56871 56655,56196 55746) SGN-E262197+ PGS (56761 56655,56196 55752) SGN-E272154- PGS (56740 56655,56196 55754) SGN-E248608- PGS (56860 56655,56196 55756) SGN-E246749+ PGS (56865 56655,56196 55758) SGN-E245018+ PGS (56761 56655,56196 55758) SGN-E306599- PGS (56745 56655,56196 55758) SGN-E263653- PGS (56745 56655,56196 55758) SGN-E260519- PGS (56711 56655,56196 55758) SGN-E203483+ PGS (56711 56655,56196 55758) SGN-E201474+ PGS (56677 56655,56196 55758) SGN-E551160- PGS (56875 56655,56196 55759) SGN-E245513+ PGS (56872 56655,56196 55759) SGN-E374904- PGS (56871 56655,56196 55759) SGN-E552877+ PGS (56871 56655,56196 55759) SGN-E378492+ PGS (56871 56655,56196 55759) SGN-E273496+ PGS (56867 56655,56196 55759) SGN-E543994+ PGS (56865 56655,56196 55759) SGN-E249554+ PGS (56857 56655,56196 55759) SGN-E370155- PGS (56856 56655,56196 55759) SGN-E370156+ PGS (56855 56655,56196 55759) SGN-E246971+ PGS (56753 56655,56196 55759) SGN-E353871+ PGS (56746 56655,56196 55759) SGN-E305770+ PGS (56718 56655,56196 55759) SGN-E249150- PGS (56702 56655,56196 55759) SGN-E304199- PGS (56693 56655,56196 55759) SGN-E303225+ PGS (56180 55759) SGN-E367871- PGS (56164 55759) SGN-E304210- PGS (56164 55759) SGN-E200370- PGS (56079 55759) SGN-E339873+ PGS (55929 55759) SGN-E308597+ PGS (56875 56655,56196 55760) SGN-E247741+ PGS (56855 56655,56196 55761) SGN-E212592+ PGS (56871 56655,56196 55763) SGN-E304911+ PGS (56870 56655,56196 55763) SGN-E578325- PGS (56865 56655,56196 55763) SGN-E248052+ PGS (56848 56655,56196 55763) SGN-E306240+ PGS (56871 56655,56196 55765) SGN-E247504+ PGS (56871 56655,56196 55765) SGN-E247679+ PGS (56866 56655,56196 55765) SGN-E271593+ PGS (56865 56655,56196 55765) SGN-E247426+ PGS (56858 56655,56196 55765) SGN-E245714+ PGS (56800 56655,56196 55765) SGN-E543993- PGS (56713 56655,56196 55765) SGN-E304780+ PGS (56711 56655,56196 55765) SGN-E209179+ PGS (56196 55765) SGN-E304923+ PGS (56847 56655,56196 55768) SGN-E249540+ PGS (56857 56655,56196 55769) SGN-E248085+ PGS (56752 56655,56196 55769) SGN-E370690- PGS (56867 56655,56196 55771) SGN-E303343+ PGS (56855 56655,56196 55771) SGN-E247681+ PGS (56861 56655,56196 55773) SGN-E302584+ PGS (56865 56655,56196 55776) SGN-E247928+ PGS (56861 56655,56196 55777) SGN-E308515+ PGS (56852 56655,56196 55777) SGN-E303877+ PGS (56187 55778) SGN-E236124+ PGS (56869 56655,56196 55788) SGN-E306482+ PGS (56855 56655,56196 55788) SGN-E246493+ PGS (56853 56655,56196 55788) SGN-E245224+ PGS (56857 56655,56196 55789) SGN-E247582+ PGS (56853 56655,56196 55789) SGN-E247976+ PGS (56844 56655,56196 55789) SGN-E247163+ PGS (56871 56655,56196 55790) SGN-E246762+ PGS (56865 56655,56196 55792) SGN-E211265+ PGS (56864 56655,56196 55795) SGN-E391991+ PGS (56733 56655,56196 55804) SGN-E245977+ PGS (56871 56655,56196 55807) SGN-E245701+ PGS (56856 56655,56196 55809) SGN-E270743+ PGS (56863 56655,56196 55821) SGN-E281688+ PGS (56871 56655,56196 55842) SGN-E374905+ PGS (56874 56655,56196 55851) SGN-E276413+ PGS (56866 56655,56196 55851) SGN-E308396+ PGS (56865 56655,56196 55851) SGN-E245819+ PGS (56876 56655,56196 55854) SGN-E296389+ PGS (56876 56655,56196 55854) SGN-E296530+ PGS (56870 56655,56196 55854) SGN-E303800+ PGS (56866 56655,56196 55856) SGN-E311604+ PGS (56855 56655,56196 55859) SGN-E200369+ PGS (56871 56655,56196 55871) SGN-E305844+ PGS (56874 56655,56196 55872) SGN-E294074+ PGS (56867 56655,56196 55872) SGN-E304209+ PGS (56865 56655,56196 55872) SGN-E247176+ PGS (56865 56655,56196 55873) SGN-E246773+ PGS (56857 56655,56196 55873) SGN-E248954+ PGS (56854 56655,56196 55873) SGN-E303905+ PGS (56853 56655,56196 55873) SGN-E245301+ PGS (56851 56655,56196 55874) SGN-E245327+ PGS (56867 56655,56196 55875) SGN-E312650+ PGS (56867 56655,56196 55875) SGN-E249386+ PGS (56866 56655,56196 55875) SGN-E271534+ PGS (56865 56655,56196 55875) SGN-E279698+ PGS (56857 56655,56196 55875) SGN-E249222+ PGS (56851 56655,56196 55875) SGN-E245272+ PGS (56858 56655,56196 55876) SGN-E246914+ PGS (56851 56655,56196 55877) SGN-E247331+ PGS (56865 56655,56196 55891) SGN-E244373+ PGS (56871 56655,56196 55902) SGN-E244320+ PGS (56870 56655,56196 55902) SGN-E237667+ PGS (56863 56655,56196 55902) SGN-E294601+ PGS (56859 56655,56196 55902) SGN-E304564+ PGS (56857 56655,56196 55902) SGN-E303228+ PGS (56856 56655,56196 55902) SGN-E279885+ PGS (56848 56655,56196 55902) SGN-E281949+ PGS (56871 56655,56196 55903) SGN-E201665+ PGS (56875 56655,56196 55905) SGN-E247037+ PGS (56857 56655,56196 55908) SGN-E276508+ PGS (56851 56655,56196 55908) SGN-E246408+ PGS (56871 56655,56196 55909) SGN-E247558+ PGS (56874 56655,56196 55910) SGN-E247851+ PGS (56867 56655,56196 55910) SGN-E304198+ PGS (56855 56655,56196 55912) SGN-E208430+ PGS (56870 56655,56196 55916) SGN-E208983+ PGS (56851 56655,56196 55923) SGN-E248242+ PGS (56871 56655,56196 55924) SGN-E304484+ PGS (56861 56655,56196 55926) SGN-E243091+ PGS (56866 56655,56196 55940) SGN-E335171+ PGS (56857 56655,56196 55942) SGN-E244980+ PGS (56876 56655,56196 55952) SGN-E296185+ PGS (56865 56655,56196 55958) SGN-E247963+ PGS (56863 56655,56196 55961) SGN-E367872+ PGS (56867 56655,56196 55963) SGN-E248178+ PGS (56866 56655,56196 55963) SGN-E301298+ PGS (56948 56655,56196 55968) SGN-E304793+ PGS (56865 56655,56196 55971) SGN-E243287+ PGS (56837 56655,56196 55971) SGN-E337946+ PGS (56874 56655,56196 55972) SGN-E295294+ PGS (56868 56655,56196 55975) SGN-E245071+ PGS (56866 56655,56196 55984) SGN-E301387+ PGS (56865 56655,56196 55988) SGN-E244946+ PGS (56865 56655,56196 55988) SGN-E244843+ PGS (56858 56655,56196 55995) SGN-E244342+ PGS (56866 56655,56196 56004) SGN-E337606+ PGS (56866 56655,56196 56005) SGN-E288181+ PGS (56872 56655,56196 56010) SGN-E396536+ PGS (56856 56655,56196 56010) SGN-E370691+ PGS (56856 56655,56196 56015) SGN-E244472+ PGS (56861 56655,56196 56057) SGN-E244911+ PGS (56872 56655,56196 56085) SGN-E303119+ PGS (56871 56655,56196 56096) SGN-E243096+ PGS (56743 56655,56196 56102) SGN-E272622+ PGS (56865 56655,56196 56104) SGN-E249099+ PGS (56857 56655,56196 56104) SGN-E245472+ PGS (56853 56655,56196 56108) SGN-E337620+ PGS (56871 56655,56196 56144) SGN-E249508+ PGS (56863 56655,56196 56170) SGN-E297291+ PGS (56870 56655,56196 56171) SGN-E243577+ PGS (56867 56655,56196 56171) SGN-E245366+ PGS (56847 56655) SGN-E244307+ PGS (56834 56669) SGN-E286063+ PGS (56875 56798) SGN-E245635+ 3-phase translation of AGS-1 (-strand): . . . . . . 56948 GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTC A F F P P H S P S L Y I L P H S L L H F P F S L L I L H L Y I Y F P I L S S I S L F P S S F S I S I Y T S P F S P P F . . . . . . 56888 TCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAG S S L M - P - V R R R K R V E A T E F Q P R L C N P K F A G E R E S K L Q N F S L L A Y V T L S S P E K E S R S Y R I S . . . . . . 56828 TTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAA F A A A E A P - P N S F R R S V L I Q K S P L R K L H S Q T P S A A A F L F R N V R R C G S S I A K L L P P Q R S Y S E . . . . . . 56768 TTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAA F S C S D S D L D I I I S N G S F F L - S L A P T P I S I S - - A M A R S F S N I L L L R L R S R Y H N K Q W L V L S L . . . . . . : 56708 CTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGG L - D S L C F R L R L R F C F S Q Q : A W S K T L S A F V S D S V S A F L S R : R G T L R L S L L S S P T P F L L F S A : G V . . . . . . 56190 ATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAA I C S G I T R C S F R C S K R S A K E Q Y A A A S Q G A V S G V A K G V P R S N D M Q R H H K V Q F P V - Q K E C Q G A . . . . . . 56130 CGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGT R D D A K K W R G I G E D F M G A R S S V M M Q K S G E E S V K T S W V P D P V T - - C K K V E R N R - R L H G C Q I Q . . . . . . 56070 TACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAA Y R L L - A G R T S K - D - R C - A P E T G Y Y R P E G Q A N E I D A A E L R K L P V T I G R K D K Q M R L T L L S S G . . . . . . 56010 GATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATC D A V E T Q I W K Q L K I F E A A P L I M L L K H R S G S N - K S L K L R R - S R C C - N T D L E A T E N L - S C A V D . . . . . . 55950 TCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGT S G Y S S E I F D Q R E K R I - - R N C P V T H R R F S I N E K R E F S E G T V L R L L I G D F R S T R K E N L V K E L . . . . . . 55890 TTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAA F I R K I - Q C E I Y S C F V A F K F - L S E K Y S S V K F T R A L L L L N F K F Y Q K N I A V - N L L V L C C F - I L . . . . . . 55830 GCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA A Y C Y I F L L L V S F I H A N E I I I L I V I S F F Y - Y L L F M Q M K - L - S L L L Y L S F I S I F Y S C K - N N Y . . . : . . . : 55770 GTATTAGTGTTAATCTTCGGGCTTTAG : AATATAAAAATAAAAAAAAATAAAGA : AAATAAA V L V L I F G L - : N I K I K K N K E : N K Y - C - S S G F R : I - K - K K I K : K I K S I S V N L R A L : E Y K N K K K - R : K - . . . . . 54692 AAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAA K E I K L Q K K Y K K R I R K L N Y K R N I K K E - K G N - I T K E I - K K N K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-11_AGS-1_PPS_1 (56946 56655,56196 56153) (frame '0'; 333 bp, 111 residues) 1 LFPSSFSISI YTSPFSPPFL LAYVTLSSPE KESRSYRISV RRCGSSIAKL LPPQRSYSEI 61 LLLRLRSRYH NKQWLVLSLT LRLSLLSSPT PFLLFSAGVD MQRHHKVQFP V- AGS-2 (56878 56655,56196 55759,54805 54782) SCR (e 1.000 d 0.981 a 1.000,e 1.000 d 0.000 a 0.000,e 0.833) Exon 1 56878 56655 ( 224 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 Pa: 1.000 Exon 2 56196 55759 ( 438 n); score: 1.000 Intron 2 55758 54806 ( 953 n); Pd: 0.000 Pa: 0.000 Exon 3 54805 54782 ( 24 n); score: 0.833 PGS (56878 56655,56196 55759,54805 54782) SGN-E554174+ 3-phase translation of AGS-2 (-strand): . . . . . . 56878 TGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTG C N P K F A G E R E S K L Q N F S S P L V T L S S P E K E S R S Y R I S V R R C - P - V R R R K R V E A T E F Q F A A . . . . . . 56818 CGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCT R K L H S Q T P S A A A F L F R N S L A G S S I A K L L P P Q R S Y S E I L L L A E A P - P N S F R R S V L I Q K F S C . . . . . . 56758 CCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACT P T P I S I S - - A M A R S F S N S K T R L R S R Y H N K Q W L V L S L T L R L S D S D L D I I I S N G S F F L - L - D . . . . . : . 56698 CTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCG L S A F V S D S V S A F L S R : R G Y A A S L L S S P T P F L L F S A : G V D M Q R S L C F R L R L R F C F S Q Q : A W I C S . . . . . . 56180 GCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATG A S Q G A V S G V A K G V P R S N V M M H H K V Q F P V - Q K E C Q G A T - - C G I T R C S F R C S K R S A K E Q R D D . . . . . . 56120 CAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTAC Q K S G E E S V K T S W V P D P V T G Y K K V E R N R - R L H G C Q I Q L P V T A K K W R G I G E D F M G A R S S Y R L . . . . . . 56060 TATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTG Y R P E G Q A N E I D A A E L R K M L L I G R K D K Q M R L T L L S S G R C C - L - A G R T S K - D - R C - A P E D A V . . . . . . 56000 AAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACT K H R S G S N - K S L K L R R - S P V T N T D L E A T E N L - S C A V D L R L L E T Q I W K Q L K I F E A A P L I S G Y . . . . . . 55940 CATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAA H R R F S I N E K R E F S E G T V L S E I G D F R S T R K E N L V K E L F Y Q K S S E I F D Q R E K R I - - R N C F I R . . . . . . 55880 AAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT K Y S S V K F T R A L L L L N F K L I V N I A V - N L L V L C C F - I L S L L L K I - Q C E I Y S C F V A F K F - A Y C . . . . . . 55820 ATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT I S F F Y - Y L L F M Q M K - L - Y - C Y L S F I S I F Y S C K - N N Y S I S V Y I F L L L V S F I H A N E I I I V L V . : . . 55760 TA : AATATAAAAATAAAAAAAAATAAA - : I - K - K K I : K Y K N K K K - L : N I K I K K N K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-11_AGS-2_PPS_1 (56731 56655,56196 55977) (frame '1'; 294 bp, 98 residues) 1 AMARSFSNSK TLSAFVSDSV SAFLSRRGYA AASQGAVSGV AKGVPRSNVM MQKSGEESVK 61 TSWVPDPVTG YYRPEGQANE IDAAELRKML LKHRSGSN- AGS-3 (56867 56655,56196 56189,56123 55688) SCR (e 1.000 d 0.981 a 1.000,e 1.000 d 0.000 a 0.000,e 1.000) Exon 1 56867 56655 ( 213 n); score: 1.000 Intron 1 56654 56197 ( 458 n); Pd: 0.981 Pa: 1.000 Exon 2 56196 56189 ( 8 n); score: 1.000 Intron 2 56188 56124 ( 65 n); Pd: 0.000 Pa: 0.000 Exon 3 56123 55688 ( 436 n); score: 1.000 PGS (55890 55688) SGN-E244244- PGS (56867 56655,56196 56189,56123 55759) SGN-E549058- PGS (56867 56655,56196 56189,56123 55759) SGN-E544533+ PGS (56866 56655,56196 56189,56123 55759) SGN-E307686+ 3-phase translation of AGS-3 (-strand): . . . . . . 56867 GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCA V R R R K R V E A T E F Q F A A A E A P F A G E R E S K L Q N F S S P L R K L H S P E K E S R S Y R I S V R R C G S S . . . . . . 56807 TAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGAT - P N S F R R S V L I Q K F S C S D S D S Q T P S A A A F L F R N S L A P T P I I A K L L P P Q R S Y S E I L L L R L R . . . . . . 56747 CTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTT L D I I I S N G S F F L - L - D S L C F S I S - - A M A R S F S N S K T L S A F S R Y H N K Q W L V L S L T L R L S L L . . . . : . : . 56687 CGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGAT : ATGCAAAAAAGTGGAGAGG R L R L R F C F S Q Q : A W I : C K K V E R V S D S V S A F L S R : R G : Y A K K W R G S S P T P F L L F S A : G V D : M Q K S G E . . . . . . 56104 AATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGAC N R - R L H G C Q I Q L P V T I G R K D I G E D F M G A R S S Y R L L - A G R T E S V K T S W V P D P V T G Y Y R P E G . . . . . . 56044 AAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAA K Q M R L T L L S S G R C C - N T D L E S K - D - R C - A P E D A V E T Q I W K Q A N E I D A A E L R K M L L K H R S G . . . . . . 55984 GCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGA A T E N L - S C A V D L R L L I G D F R Q L K I F E A A P L I S G Y S S E I F D S N - K S L K L R R - S P V T H R R F S . . . . . . 55924 TCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGA S T R K E N L V K E L F Y Q K N I A V - Q R E K R I - - R N C F I R K I - Q C E I N E K R E F S E G T V L S E K Y S S V . . . . . . 55864 AATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATT N L L V L C C F - I L S L L L Y L S F I I Y S C F V A F K F - A Y C Y I F L L L K F T R A L L L L N F K L I V I S F F Y . . . . . . 55804 AGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTA S I F Y S C K - N N Y S I S V N L R A L V S F I H A N E I I I V L V L I F G L - - Y L L F M Q M K - L - Y - C - S S G F . . . . . . 55744 GATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT D P I F F F F F F - I L Q S P G L R I I L F F S S F F F E F F N L Q V Y V R S Y F F L L F F L N S S I S R F T Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-11_AGS-3_PPS_1 (56865 56655,56196 56189,56123 55977) (frame '0'; 363 bp, 121 residues) 1 SPEKESRSYR ISVRRCGSSI AKLLPPQRSY SEILLLRLRS RYHNKQWLVL SLTLRLSLLS 61 SPTPFLLFSA GVDMQKSGEE SVKTSWVPDP VTGYYRPEGQ ANEIDAAELR KMLLKHRSGS 121 N- PGL 12 (+ strand): 62443 63107 AGS-1 (62443 62893) SCR (e 0.807) Exon 1 62443 62893 ( 451 n); score: 0.807 PGS (62443 62893) SGN-E394609- PGS (62443 62893) SGN-E379112+ PGS (62443 62892) SGN-E379618- PGS (62443 62762) SGN-E394141+ PGS (62562 62892) SGN-E200845- PGS (62564 62893) SGN-E393065- PGS (62572 62893) SGN-E393076- PGS (62603 62893) SGN-E393075- 3-phase translation of AGS-1 (+strand): . . . . . . 62443 GGAAAATTGTATATAATAGTAAATTAATAACCTAAAATAAATGGAATAGCTAGGGTTTGA G K L Y I I V N - - P K I N G I A R V - E N C I - - - I N N L K - M E - L G F D K I V Y N S K L I T - N K W N S - G L . . . . . . 62503 TTTAATTGTGCTCCATAGCAAACCTTAGCTAAAATTTGCCAGCGTCTCTCTCCCAAAAAT F N C A P - Q T L A K I C Q R L S P K N L I V L H S K P - L K F A S V S L P K I I - L C S I A N L S - N L P A S L S Q K . . . . . . 62563 CTCGCTCGCCTCTCTTGCTTTATACACAGAAGTGTATAATTCTGTTTCTATTTTGTATAA L A R L S C F I H R S V - F C F Y F V - S L A S L A L Y T E V Y N S V S I L Y K S R S P L L L Y T Q K C I I L F L F C I . . . . . . 62623 AGCGAGAGAAAATTGTATATACACATGCAAAAATATATATCTTCGTGTTATACACTTAAT S E R K L Y I H M Q K Y I S S C Y T L N A R E N C I Y T C K N I Y L R V I H L I K R E K I V Y T H A K I Y I F V L Y T - . . . . . . 62683 TATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGACCAACAAATTATAT Y T I Y K H F T S N I A E K K T N K L Y I Q F T N I L L Q I L Q R K R P T N Y I L Y N L Q T F Y F K Y C R E K D Q Q I I . . . . . . 62743 AATTGCGAATTATACAATTGCAGTGAAATATAATTTTCTCTAGCTTTATACAACAGAAGT N C E L Y N C S E I - F S L A L Y N R S I A N Y T I A V K Y N F L - L Y T T E V - L R I I Q L Q - N I I F S S F I Q Q K . . . . . . 62803 GAATATATTGTGTTTCTCTTTTTGTATAAAGCGAGAAAAACATATATCTTCTTGCTATAC E Y I V F L F L Y K A R K T Y I F L L Y N I L C F S F C I K R E K H I S S C Y T - I Y C V S L F V - S E K N I Y L L A I . . . . 62863 ACTTATAATTATGCAATATACGTACATTTTA T Y N Y A I Y V H F L I I M Q Y T Y I L H L - L C N I R T F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-12_AGS-1_PPS_1 (62531 62785) (frame '2'; 252 bp, 84 residues) 1 LKFASVSLPK ISLASLALYT EVYNSVSILY KARENCIYTC KNIYLRVIHL IIQFTNILLQ 61 ILQRKRPTNY IIANYTIAVK YNFL- 3-phase translation of AGS-1 (-strand): . . . . . . 62893 TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCG - N V R I L H N Y K C I A R R Y M F F S K M Y V Y C I I I S V - Q E D I C F S R K C T Y I A - L - V Y S K K I Y V F L . . . . . . 62833 CTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATT L Y T K R E T Q Y I H F C C I K L E K I F I Q K E K H N I F T S V V - S - R K L A L Y K K R N T I Y S L L L Y K A R E N . . . . . . 62773 ATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAA I F H C N C I I R N Y I I C W S F S L Q Y F T A I V - F A I I - F V G L F L C N Y I S L Q L Y N S Q L Y N L L V F F S A . . . . . . 62713 TATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATT Y L K - N V C K L Y N - V Y N T K I Y I I - S K M F V N C I I K C I T R R Y I F I F E V K C L - I V - L S V - H E D I Y . . . . . . 62653 TTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACAC F A C V Y T I F S R F I Q N R N R I I H L H V Y I Q F S L A L Y K I E T E L Y T F C M C I Y N F L S L Y T K - K Q N Y T . . . . . . 62593 TTCTGTGTATAAAGCAAGAGAGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTT F C V - S K R G E R D F W E R D A G K F S V Y K A R E A S E I F G R E T L A N F L L C I K Q E R R A R F L G E R R W Q I . . . . . . 62533 TAGCTAAGGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAG - L R F A M E H N - I K P - L F H L F - S - G L L W S T I K S N P S Y S I Y F R L A K V C Y G A Q L N Q T L A I P F I L . . . . 62473 GTTATTAATTTACTATTATATACAATTTTCC V I N L L L Y T I F L L I Y Y Y I Q F S G Y - F T I I Y N F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (62443 62593,62779 62842) SCR (e 0.825 d 0.696 a 0.000,e 0.844) Exon 1 62443 62593 ( 151 n); score: 0.825 Intron 1 62594 62778 ( 185 n); Pd: 0.696 Pa: 0.000 Exon 2 62779 62842 ( 64 n); score: 0.844 PGS (62443 62593,62779 62842) SGN-E392605+ 3-phase translation of AGS-2 (+strand): . . . . . . 62443 GGAAAATTGTATATAATAGTAAATTAATAACCTAAAATAAATGGAATAGCTAGGGTTTGA G K L Y I I V N - - P K I N G I A R V - E N C I - - - I N N L K - M E - L G F D K I V Y N S K L I T - N K W N S - G L . . . . . . 62503 TTTAATTGTGCTCCATAGCAAACCTTAGCTAAAATTTGCCAGCGTCTCTCTCCCAAAAAT F N C A P - Q T L A K I C Q R L S P K N L I V L H S K P - L K F A S V S L P K I I - L C S I A N L S - N L P A S L S Q K . . . . : . . 62563 CTCGCTCGCCTCTCTTGCTTTATACACAGAA : TCTCTAGCTTTATACAACAGAAGTGAATA L A R L S C F I H R : I S S F I Q Q K - I S L A S L A L Y T E : S L A L Y N R S E Y S R S P L L L Y T Q N : L - L Y T T E V N . . . . 62808 TATTGTGTTTCTCTTTTTGTATAAAGCGAGAAAAA Y C V S L F V - S E K I V F L F L Y K A R K I L C F S F C I K R E K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (62699 62758,62911 62964,62995 63107) SCR (e 0.733 d 0.000 a 0.000,e 0.889 d 0.699 a 0.000,e 0.752) Exon 1 62699 62758 ( 60 n); score: 0.733 Intron 1 62759 62910 ( 152 n); Pd: 0.000 Pa: 0.000 Exon 2 62911 62964 ( 54 n); score: 0.889 Intron 2 62965 62994 ( 30 n); Pd: 0.699 Pa: 0.000 Exon 3 62995 63107 ( 113 n); score: 0.752 PGS (62699 62758,62911 62964,62995 63107) SGN-E578389+ 3-phase translation of AGS-3 (+strand): . . . . . . : 62699 ATTTTACTTCAAATATTGCAGAGAAAAAGACCAACAAATTATATAATTGCGAATTATACA : I L L Q I L Q R K R P T N Y I I A N Y T : F Y F K Y C R E K D Q Q I I - L R I I Q : F T S N I A E K K T N K L Y N C E L Y : . . . . . . : 62911 GCAAAACAAATTGTACAATTTCAGCGAAATAGGCCAGCGAATTATACAATTTAG : GCGAAT A K Q I V Q F Q R N R P A N Y T I - : A N Q N K L Y N F S E I G Q R I I Q F R : R I S K T N C T I S A K - A S E L Y N L : G E . . . . . . 63001 TATACAGTTTTATGTTTGCTATGGAGCGCAATTACGTAAATTTTGCTATAACATATAAAT Y T V L C L L W S A I T - I L L - H I N I Q F Y V C Y G A Q L R K F C Y N I - I L Y S F M F A M E R N Y V N F A I T Y K . . . . . 63061 ATAATTTTTTTTATTTTTTATATGTAAAAGTTGCCCATATATACAAC I I F F I F Y M - K L P I Y T - F F L F F I C K S C P Y I Q Y N F F Y F L Y V K V A H I Y N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (62709 62769,62906 63096) SCR (e 0.787 d 0.000 a 0.000,e 0.874) Exon 1 62709 62769 ( 61 n); score: 0.787 Intron 1 62770 62905 ( 136 n); Pd: 0.000 Pa: 0.000 Exon 2 62906 63096 ( 191 n); score: 0.874 PGS (62709 62769,62906 63096) SGN-E379427+ 3-phase translation of AGS-4 (+strand): . . . . . . 62709 AAATATTGCAGAGAAAAAGACCAACAAATTATATAATTGCGAATTATACAATTGCAGTGA K Y C R E K D Q Q I I - L R I I Q L Q - N I A E K K T N K L Y N C E L Y N C S E I L Q R K R P T N Y I I A N Y T I A V . : . . . . . 62769 A : TGTATGCAAAACAAATTGTACAATTTCAGCGAAATAGGCCAGCGAATTATACAATTTAG : M Y A K Q I V Q F Q R N R P A N Y T I - : C M Q N K L Y N F S E I G Q R I I Q F R N : V C K T N C T I S A K - A S E L Y N L . . . . . . 62965 GTCAGCGAATTATACAATTATATATGTATAGCGAATTATACAGTTTTATGTTTGCTATGG V S E L Y N Y I C I A N Y T V L C L L W S A N Y T I I Y V - R I I Q F Y V C Y G G Q R I I Q L Y M Y S E L Y S F M F A M . . . . . . 63025 AGCGCAATTACGTAAATTTTGCTATAACATATAAATATAATTTTTTTTATTTTTTATATG S A I T - I L L - H I N I I F F I F Y M A Q L R K F C Y N I - I - F F L F F I C E R N Y V N F A I T Y K Y N F F Y F L Y . . 63085 TAAAAGTTGCCC - K L P K S C V K V A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 63885 69091 AGS-1 (63885 64084,64183 64355,68056 68149,68460 68548,69014 69091) SCR (e 1.000 d 0.970 a 0.998,e 1.000 d 0.963 a 0.976,e 1.000 d 1.000 a 0.997,e 1.000 d 1.000 a 0.991,e 0.910) Exon 1 63885 64084 ( 200 n); score: 1.000 Intron 1 64085 64182 ( 98 n); Pd: 0.970 Pa: 0.998 Exon 2 64183 64355 ( 173 n); score: 1.000 Intron 2 64356 68055 (3700 n); Pd: 0.963 Pa: 0.976 Exon 3 68056 68149 ( 94 n); score: 1.000 Intron 3 68150 68459 ( 310 n); Pd: 1.000 Pa: 0.997 Exon 4 68460 68548 ( 89 n); score: 1.000 Intron 4 68549 69013 ( 465 n); Pd: 1.000 Pa: 0.991 Exon 5 69014 69091 ( 78 n); score: 0.910 PGS (63885 64084,64183 64355,68056 68149) SGN-E209693+ PGS (63893 64084,64183 64355,68056 68149,68460 68548,69014 69042) SGN-E310722+ PGS (63923 64084,64183 64355,68056 68149,68460 68548,69014 69042) SGN-E326387+ PGS (63923 64084,64183 64355,68056 68149,68460 68548,69014 69037) SGN-E251243+ PGS (63947 64084,64183 64355,68056 68149,68460 68548) SGN-E311900+ PGS (63948 64084,64183 64355,68056 68149,68460 68548,69014 69091) SGN-E369720+ PGS (63948 64084,64183 64355,68056 68149,68460 68548,69014 69057) SGN-E248992+ PGS (63948 64084,64183 64355,68056 68149,68460 68548,69014 69054) SGN-E241403+ PGS (63955 64084,64183 64355,68056 68149,68460 68548,69014 69057) SGN-E272699+ 3-phase translation of AGS-1 (+strand): . . . . . . 63885 TCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAA S C P K I S G E I N D Y - S F Y L T G E R A Q K F L E K L T T T E V S T S P A K V P K N F W R N - R L L K F L P H R R . . . . . . 63945 AGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAA S C S - A - T S S H G G G E P K Y E P E V A A R R R R A A M A E A N Q N T N P N K L Q L G V D E Q P W R R R T K I R T R . . . . . . 64005 TCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAA S G P - R R R S S T K C D Y L H Q - P Q P A P S G G E V P P N V T I Y I N N L N I R P L A A A K F H Q M - L F T S I T S . . : . . . . 64065 TGAAAAAATTAAGCTTGAAG : AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGG - K N - A - R : A E E I D A R C V L T V W E K I K L E : E L K K S M H A V F S Q F G M K K L S L K : S - R N R C T L C S H S L . . . . . . 64223 TAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGT - D T G G F S I Q N P K A - R T G V G S K I L E V L A F K T L K H K G Q A W V V V R Y W R F - H S K P - S I K D R R G - . . . . . . 64283 GTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTA V - - S F F C - Q C T S P D A G F S F L F D E V S S A S N A L R Q M Q G F P F Y C L M K F L L L A M H F A R C R V F L S . . : . . . . 64343 TGATAAGCCTATG : AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGA - - A Y : E N T I C K D E I - C C S K S R D K P M : R I Q Y A K T K S D V V A K A D M I S L - : E Y N M Q R R N L M L - Q K P . . . . . : . 68103 TGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG : GGAGAAAGAAGAA W Y F C S P R K K K E A R G - R : E K E E G T F V P R E K R K R H E D K : G R K K K M V L L F P E K K E R G T R I K : G E R R . . . . . . 68473 GGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTA G P A R C - S S W N G P E S C I C W C L D Q Q D A N Q A G M G R N P A Y A G A Y R T S K M L I K L E W A G I L H M L V L . . : . . . . 68533 TGGTGCAGCACCTCCT : TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC W C S T S : F L T N T I H G W S - S C S T G A A P P : F S Q I P Y M G G A K A A V P M V Q H L L : S H K Y H T W V E L K L Q Y . . . . 69058 GGAGGCTCCTGCTCCGCCAAATAGCATATTGTTT G G S C S A K - H I V E A P A P P N S I L F R R L L L R Q I A Y C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-13_AGS-1_PPS_1 (63886 64084,64183 64355,68056 68149,68460 68548,69014 69091) (frame '2'; 633 bp, 211 residues) 1 RAQKFLEKLT TTEVSTSPAK VAARRRRAAM AEANQNTNPN PAPSGGEVPP NVTIYINNLN 61 EKIKLEELKK SMHAVFSQFG KILEVLAFKT LKHKGQAWVV FDEVSSASNA LRQMQGFPFY 121 DKPMRIQYAK TKSDVVAKAD GTFVPREKRK RHEDKGRKKK DQQDANQAGM GRNPAYAGAY 181 GAAPPFSQIP YMGGAKAAVP EAPAPPNSIL F PGL 14 (- strand): 83302 82969 AGS-1 (83302 82969) SCR (e 0.981) Exon 1 83302 82969 ( 334 n); score: 0.981 PGS (83302 82969) SGN-E392622- 3-phase translation of AGS-1 (-strand): . . . . . . 83302 AAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATC K I D S L D P F L M S F P V R K M Y R I K L I L W I H F - - V F R - E K C T E S N - F F G S I S D E F S G E K N V Q N . . . . . . 83242 AGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTT R G R R - R - A T A - Y P P K N F V G F E E E D E D K R R L N T L Q R I L L V L Q R K K M K I S D G L I P S K E F C W F . . . . . . 83182 GTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTA V K V G V N I I I L C L F F C L F V V L L K L V S I - - Y Y V Y F F A Y L L C - C - S W C Q Y N N T M F I F L P I C C V . . . . . . 83122 GGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAA G G - G V Y R G W - R W M Y Q F K S G - V G E V F I E V G R G G C I N L R V D K R W V R C L - R L V E V D V S I - E W I . . . . . . 83062 ATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATC I F V R V N L F V - F - I D M K F K K I F L Y E S I Y L S D F E S I - N L R K S N F C T S Q F I C L I L N R Y E I - E N . . . . 83002 AAATAACTATCTAAAATAGAGAGATTATTTTTGA K - L S K I E R L F L N N Y L K - R D Y F - Q I T I - N R E I I F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 82969 TCAAAAATAATCTCTCTATTTTAGATAGTTATTTGATTTTCTTAAATTTCATATCGATTC S K I I S L F - I V I - F S - I S Y R F Q K - S L Y F R - L F D F L K F H I D S K N N L S I L D S Y L I F L N F I S I . . . . . . 83029 AAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCC K I R Q I N - L V Q K F I H S - I D T S K S D K - I D S Y K N L S T L K L I H P Q N Q T N K L T R T K I Y P L L N - Y I . . . . . . 83089 ACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATA T S T N L Y K H L T H L T Q Q I G K K I P L P T S I N T S P T - H N K - A K K - H L Y Q P L - T P H P P N T T N R Q K N . . . . . . 83149 AACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGT N I V L L Y - H Q L - Q N Q Q N S L E G T - Y Y Y I D T N F N K T N K I L W R V K H S I I I L T P T L T K P T K F F G G . . . . . . 83209 ATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAA I K P S L I F I F F L - F C T F F S P E L S R R L S S S S S S D S V H F S H R K Y - A V A Y L H L L P L I L Y I F L T G . . . . 83269 AACTCATCAGAAATGGATCCAAAGAATCAATTTT N S S E M D P K N Q F T H Q K W I Q R I N F K L I R N G S K E S I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 83132 86532 AGS-1 (83132 84237,85537 85766,85859 85951,86094 86532) SCR (e 1.000 d 0.941 a 0.998,e 1.000 d 0.881 a 0.996,e 1.000 d 0.999 a 0.977,e 1.000) Exon 1 83132 84237 (1106 n); score: 1.000 Intron 1 84238 85536 (1299 n); Pd: 0.941 Pa: 0.998 Exon 2 85537 85766 ( 230 n); score: 1.000 Intron 2 85767 85858 ( 92 n); Pd: 0.881 Pa: 0.996 Exon 3 85859 85951 ( 93 n); score: 1.000 Intron 3 85952 86093 ( 142 n); Pd: 0.999 Pa: 0.977 Exon 4 86094 86532 ( 439 n); score: 1.000 PGS (83132 83640) SGN-E201782- PGS (83181 83512) SGN-E283968+ PGS (83186 83718) SGN-E253410+ PGS (83212 83699) SGN-E324017+ PGS (83215 83818) SGN-E272873+ PGS (83217 83777) SGN-E338462+ PGS (83217 83775) SGN-E312351+ PGS (83222 83834) SGN-E306807+ PGS (83397 83641) SGN-E392372- PGS (83435 83985) SGN-E254133+ PGS (83571 84045) SGN-E214506+ PGS (83824 84237,85537 85622) SGN-E284051+ PGS (83905 84237,85537 85599) SGN-E294287+ PGS (83905 84237,85537 85599) SGN-E294288+ PGS (83905 84102) SGN-E289947+ PGS (83995 84237,85537 85766,85859 85951,86094 86193) SGN-E344812+ PGS (84166 84237,85537 85766,85859 85951,86094 86320) SGN-E284494- PGS (85541 85766,85859 85951,86094 86324) SGN-E279534+ PGS (85759 85766,85859 85951,86094 86434) SGN-E226505- PGS (86176 86434) SGN-E226906- PGS (86209 86532) SGN-E390094+ PGS (86209 86532) SGN-E390468+ PGS (86209 86532) SGN-E390607+ PGS (86209 86532) SGN-E390093- PGS (86209 86532) SGN-E390848- PGS (86210 86532) SGN-E285047+ 3-phase translation of AGS-1 (+strand): . . . . . . 83132 AAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAAC K - A K K - T - Y Y Y I D T N F N K T N N R Q K N K H S I I I L T P T L T K P T I G K K I N I V L L Y - H Q L - Q N Q . . . . . . 83192 AAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTA K I L W R V L S R R L S S S S S S D S V K F F G G Y - A V A Y L H L L P L I L Y Q N S L E G I K P S L I F I F F L - F C . . . . . . 83252 CATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACT H F S H R K T H Q K W I Q R I N F P I T I F L T G K L I R N G S K E S I F R - L T F F S P E N S S E M D P K N Q F S D N . . . . . . 83312 CAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAA Q K P K H L K K N N S R H P F Y R - L Q R S P N T S R R T T A D T H F T D S F N S E A Q T P Q E E Q Q Q T P I L P I A S . . . . . . 83372 TTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAA F H L L Y P Q S F Q P I S L I L L K S Q F T C F I H N P S N P F P - S S - N L N I S L A L S T I L P T H F L N P P K I S . . . . . . 83432 CCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATC P F S T N Q T K S K S Q L K F H L L Q I P F Q Q T K Q S Q N P N S S F I S Y K S T L F N K P N K V K I P T Q V S S L T N . . . . . . 83492 TCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTG S H F Q L L L F H L Q I P N S S P L F L L T F S F F S S T Y K F Q I Q V H Y F C L S L S A S S L P P T N S K F K S T I S . . . . . . 83552 CTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATG L T L F R I L - L L T L F V L L S L L M - P S S E Y S N S - P S S S F - A F - C A N P L Q N T L T L N P L R P S E P S N . . . . . . 83612 CTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATA L L G F D E R R L F G S V T I F V F M I C W A S T S V D C L V P - R S S C S - - A A G L R R A S I V W F R N D L R V H D . . . . . . 83672 ATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTG M S V L T R L I M S P C L Y W L F T V L - V S - R G S - - V H V C I G C L L F - N E C L N A A H N E S M S V L A V Y C F . . . . . . 83732 ACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTA T R E I M E N P H L G L I K L G R I G L P E R L W K I L I W V - - N W A V - G - D P R D Y G K S S S G F D K T G P Y R A . . . . . . 83792 GTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATC V F - L I L L L T L G R I Y R Q E G L I F F D - F C C - P - E E S T G K R V - S S F L I D S V A D L R K N L Q A R G S D . . . . . . 83852 TTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAG L L L E L G S R R L C W W N - L K L L E C C - N W E A G D C V G G I S - S C W S L V V R I G K P E T V L V E L A K A V G . . . . . . 83912 CTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGA L K L C M L I G R F H M M R L K G K I R - S C V C S - G G F T - - G - R G R - D A E A V Y A H R E V S H D E V K G E D K . . . . . . 83972 TTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGT L M L - - R M R V W R - S I S G V V H C - C C N E G - G F G G E V F L G - Y I V I D A V M K D E G L E V K Y F W G S T L . . . . . . 84032 ATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTA I M L M I C L L S W S K C L R I T E A L S C - - F A F - V G A N A Y E L R R L - Y H V D D L P F K L E Q M P T N Y G G F . . . . . . 84092 GGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGG G R K C R D W R - G R Q L R H W I N - G G E S A G I G G K E D N - G I G S I E G R E K V Q G L E V R K T I E A L D Q L R . . . . . . 84152 GATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGC D C L L E V M W N L G R F L R W L I W G I A C - R - C G T W G D S F V G - F G A G L P A R G D V E P G E I P S L V D L G . . . : . . . 84212 TCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGG S I L V P P W V R : M E N Q L L M L P L W Q S - C H H G S : E W K I S C - C F P C G L N P S A T M G Q : N G K S A A N A S L V . . . . . . 85571 GAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAAC E E R M K H C K D L E N L Q Q N V R P N R R E - S T A K T - K I C S R M S G P T G G E N E A L Q R L R K F A A E C Q A Q . . . . . . 85631 CCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCA P V R K T R M A Q M T A Y M V Q T F L A Q - G K Q G W H K - Q H I W C K L F L Q P S K E N K D G T N D S I Y G A N F S C . . . . . . 85691 AAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGA K Y R L G - L W D V S H P V P C L M N - N I A L V S Y G M S L T P F H V - - I E K I S P W L A M G C L S P R S M F D E L . . : . . . . 85751 AGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCA R S P L Q : E R F L L P L P R K M V V V A E V H F K : N D F C C L C Q E R W W - W H K K S T S R : T I S A A S A K K D G G S G . . . . . : . 85903 CTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCA L G - T G - C T S C Y G G I F S : D S S P W A E L A D V R A V M E G F F Q : I H H Q T G L N W L M Y E L L W R D F F R : F I T . . . . . . 86105 AGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTG R N I V L Q N K I V L L Q - L L A - E L E I - C C K T K - C C S S N Y L R R S C K K Y S A A K Q N S A A P V T T C V G A . . . . . . 86165 CTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTA L L N D G I L K R R M K V S F L - L D L C L T M V Y S K G E - R F P F C S L I Y A A - R W Y T Q K E N E G F L F V A - F . . . . . . 86225 TTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATT F F P E V - L W N V R V G L P L N - S I F F R K F S C G M L E L D C H - I E A F I F S G S L A V E C - S W T A I E L K H . . . . . . 86285 TTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCG F S F D N K C - D I K E F V A I S S K S F L L T I S V E T - K N L S P F L A S R F F F - Q - V L R H K R I C R H F - Q V . . . . . . 86345 CTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACA L Y N P S Y A S I Y I F L I S S V V E T S T I L L M L V F I Y F - F H L - L K Q A L Q S F L C - Y L Y I F D F I C S - N . . . . . . 86405 GGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCC G V I T N I P V V E I C V P C L R L P S V - - Q T Y L - L K Y V F H V - D Y H P R C D N K H T C S - N M C S M F E I T I . . . . . . 86465 ATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTC I L N P R R V S L S I R - F T I D T H F S - T R G E Y P - A S D D L L L I L I S H L E P A E S I L E H Q M I Y Y - Y S F . 86525 AATGTAAA N V M - Q C K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-15_AGS-1_PPS_1 (83245 84237,85537 85766,85859 85951,86094 86172) (frame '0'; 1392 bp, 464 residues) 1 FCTFFSPENS SEMDPKNQFS DNSEAQTPQE EQQQTPILPI ASISLALSTI LPTHFLNPPK 61 ISTLFNKPNK VKIPTQVSSL TNLSLSASSL PPTNSKFKST ISANPLQNTL TLNPLRPSEP 121 SNAAGLRRAS IVWFRNDLRV HDNECLNAAH NESMSVLAVY CFDPRDYGKS SSGFDKTGPY 181 RASFLIDSVA DLRKNLQARG SDLVVRIGKP ETVLVELAKA VGAEAVYAHR EVSHDEVKGE 241 DKIDAVMKDE GLEVKYFWGS TLYHVDDLPF KLEQMPTNYG GFREKVQGLE VRKTIEALDQ 301 LRGLPARGDV EPGEIPSLVD LGLNPSATMG QNGKSAANAS LVGGENEALQ RLRKFAAECQ 361 AQPSKENKDG TNDSIYGANF SCKISPWLAM GCLSPRSMFD ELKKSTSRTI SAASAKKDGG 421 SGTGLNWLMY ELLWRDFFRF ITKKYSAAKQ NSAAPVTTCV GAAA- >C09HBa0278J12.1+_PGL-15_AGS-1_PPS_2 (86309 86503) (frame '1'; 192 bp, 64 residues) 1 DIKEFVAISS KSLYNPSYAS IYIFLISSVV ETGVITNIPV VEICVPCLRL PSILNPRRVS 61 LSIR- PGL 16 (- strand): 91918 88563 AGS-1 (91834 91775,91686 91427,88933 88563) SCR (e 1.000 d 0.998 a 0.918,e 1.000 d 0.999 a 0.000,e 1.000) Exon 1 91834 91775 ( 60 n); score: 1.000 Intron 1 91774 91687 ( 88 n); Pd: 0.998 Pa: 0.918 Exon 2 91686 91427 ( 260 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 Pa: 0.000 Exon 3 88933 88563 ( 371 n); score: 1.000 PGS (91810 91775,91686 91427,88933 88563) SGN-E345647+ PGS (91698 91427,88933 88567) SGN-E371903- PGS (88933 88567) SGN-E551822+ PGS (88933 88567) SGN-E553003+ PGS (91485 91427,88933 88578) SGN-E287536+ PGS (91680 91427,88933 88579) SGN-E353870+ PGS (91558 91427,88933 88616) SGN-E551726+ PGS (88933 88616) SGN-E352396+ PGS (91788 91775,91686 91427,88933 88635) SGN-E306494+ PGS (88933 88646) SGN-E219375- PGS (91706 91427,88933 88751) SGN-E336142+ PGS (91648 91427,88933 88751) SGN-E335016+ PGS (91617 91427,88933 88751) SGN-E284720- PGS (91698 91427,88933 88774) SGN-E357774+ PGS (91697 91427,88933 88774) SGN-E285777+ PGS (91834 91775,91686 91427,88933 88784) SGN-E276642+ 3-phase translation of AGS-1 (-strand): . . . . . . : 91834 TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : F N R V T T S I H S H - A V D V E F H P : L T E S P L P Y T H T R P W T S S F I L : - Q S H H F H T L T L G R G R R V S S : . . . . . . 91686 CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGC Q K R N T E S V K M S R A A A A A V K G R R E I Q R V - R - A E Q Q Q Q Q - R A S E E K Y R E C K D E P S S S S S S E G . . . . . . 91626 GGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATC G K K K G A S F V I D C S K P V E D S I G R R R G Q A S S L T V R S R - K T V S R E E E G G K L R H - L F E A G R R Q Y . . . . . . 91566 ATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCT M E I A S L D K F L Q E R I K V G G K A W R L L L L T S S F K R G L R L V E K L H G D C F S - Q V P S R E D - G W W K S . . . . . . 91506 GGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGC G A L G D S V T V T R D K N K I T V T C V L L G I P L L L L V T R T R S P S P A W C S W G F R Y C Y S - Q E Q D H R H L . . : . . . . 91446 AACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAAT N S T F S K R : Y L K Y L V K K Y L K K N T Q L F P R : G T S N T L S K S T - R K I Q L N F F Q E : V P Q I P C Q K V L E E K . . . . . . 88893 AACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTG N V R D W L R V I A S N K D R N V Y E L T S G I G L G - L L P T R T G M F T N C - R Q G L A - G D C F Q Q G Q E C L R I . . . . . . 88833 CGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAAT R Y F N I A E N E A D E E D - T - P F N A T S T L L R M K Q M K K I K H D H S M A L L Q H C - E - S R - R R L N M T I Q . . . . . . 88773 GTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTA V S L Y L L S L V G L H F L I L V S S L S L F I F F L - S A F T F - S L Y H H - C L S L S S F F S R P S L F D P C I I T . . . . . . 88713 ATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAA M N P V F S F L D F V F A V C L S V K E - I L S S H F - I L F L Q F A Y Q - K K N E S C L L I S R F C F C S L L I S K R . . . . . . 88653 AACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTT N I T S I L W F V Y L W G - L - K C Q F T L H R Y F G L S I F G D N Y E N V N L K H Y I D T L V C L S L G I I M K M S I . . . . 88593 ATCTGTATTGCCTTTCTCCTCTGGATGATCT I C I A F L L W M I S V L P F S S G - S Y L Y C L S P L D D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-16_AGS-1_PPS_1 (91798 91775,91686 91427,88933 88789) (frame '1'; 426 bp, 142 residues) 1 AVDVEFHPQK RNTESVKMSR AAAAAVKGGK KKGASFVIDC SKPVEDSIME IASLDKFLQE 61 RIKVGGKAGA LGDSVTVTRD KNKITVTCNS TFSKRYLKYL VKKYLKKNNV RDWLRVIASN 121 KDRNVYELRY FNIAENEADE ED- >C09HBa0278J12.1-_PGL-16_AGS-1_PPS_2 (88798 88565) (frame '0'; 234 bp, 78 residues) 1 RRLNMTIQCL SLSSFFSRPS LFDPCIITNE SCLLISRFCF CSLLISKRKH YIDTLVCLSL 61 GIIMKMSIYL YCLSPLDD AGS-2 (91790 91775,91699 91427,88933 88612) SCR (e 0.812 d 0.998 a 0.000,e 0.912 d 0.999 a 0.000,e 0.812) Exon 1 91790 91775 ( 16 n); score: 0.812 Intron 1 91774 91700 ( 75 n); Pd: 0.998 Pa: 0.000 Exon 2 91699 91427 ( 273 n); score: 0.912 Intron 2 91426 88934 (2493 n); Pd: 0.999 Pa: 0.000 Exon 3 88933 88612 ( 322 n); score: 0.812 PGS (91790 91775,91699 91427,88933 88612) SGN-E272167+ 3-phase translation of AGS-2 (-strand): . . : . . . . 91790 CGTCGAGTTTCATCCT : TTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGA R R V S S : F L N A S R R E I Q R V - R - V E F H P : F - M P A E E K Y R E C K D E S S F I L : F E C Q Q K R N T E S V K M . . . . . . 91655 GCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTG A E Q Q Q Q Q - R A G R R R G Q A S S L P S S S S S S E G R E E E G G K L R H - S R A A A A A V K G G K K K G A S F V I . . . . . . 91595 ACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTC T V R S R - K T V S W R L L L L T S S F L F E A G R R Q Y H G D C F S - Q V P S D C S K P V E D S I M E I A S L D K F L . . . . . . 91535 AAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTC K R G L R L V E K L V L L G I P L L L L R E D - G W W K S W C S W G F R Y C Y S Q E R I K V G G K A G A L G D S V T V T . . . . . : . 91475 GTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAAT V T R T R S P S P A T Q L F P R : G T S N - Q E Q D H R H L Q L N F F Q E : V P Q I R D K N K I T V T C N S T F S K R : Y L K . . . . . . 88922 ACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTT T L S K S T - R K I T S G I G L G - L L P C Q K V L E E K - R Q G L A - G D C F Y L V K K Y L K K N N V R D W L R V I A . . . . . . 88862 CCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAG P T R T G M F T N C A T S T L L R M K Q Q Q G Q E C L R I A L L Q H C - E - S R S N K D R N V Y E L R Y F N I A E N E A . . . . . . 88802 ATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCC M K K I K H D H S M S L F I F F L - S A - R R L N M T I Q C L S L S S F F S R P D E E D - T - P F N V S L Y L L S L V G . . . . . . 88742 TTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTG F T F - S L Y H H - - I L S S H F - I L S L F D P C I I T N E S C L L I S R F C L H F L I L V S S L M N P V F S F L D F . . . . . . 88682 TTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATC F L Q F A Y Q - K K T L H R Y F G L S I F C S L L I S K R K H Y I D T L V C L S V F A V C L S V K E N I T S I L W F V Y . . 88622 TTTGGGGATAA F G D L G I L W G - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-16_AGS-2_PPS_1 (91788 91775,91699 91427,88933 88789) (frame '0'; 429 bp, 143 residues) 1 SSFILFECQQ KRNTESVKMS RAAAAAVKGG KKKGASFVID CSKPVEDSIM EIASLDKFLQ 61 ERIKVGGKAG ALGDSVTVTR DKNKITVTCN STFSKRYLKY LVKKYLKKNN VRDWLRVIAS 121 NKDRNVYELR YFNIAENEAD EED- AGS-3 (91918 91775,91683 91427,88933 88751) SCR (e 0.969 d 0.998 a 0.809,e 1.000 d 0.999 a 0.000,e 0.995) Exon 1 91918 91775 ( 144 n); score: 0.969 Intron 1 91774 91684 ( 91 n); Pd: 0.998 Pa: 0.809 Exon 2 91683 91427 ( 257 n); score: 1.000 Intron 2 91426 88934 (2493 n); Pd: 0.999 Pa: 0.000 Exon 3 88933 88751 ( 183 n); score: 0.995 PGS (91918 91775,91683 91427,88933 88751) SGN-E287412+ PGS (91839 91775,91683 91427,88933 88796) SGN-E338914+ 3-phase translation of AGS-3 (-strand): . . . . . . 91918 TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCA W N V T - N R A K S A N - R E V P H L A G T - P K I G P K V Q I R E R C H I - Q E R N L K - G Q K C K L E R G A T F S . . . . . . 91858 AGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAG S R N E G K P - F N R V T T S I H S H - V G T K E N P N L T E S P L P Y T H T R K - E R R K T L I - Q S H H F H T L T L . . . : . . . 91798 GCCGTGGACGTCGAGTTTCATCCT : AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCA A V D V E F H P : K R N T E S V K M S R A P W T S S F I L : R E I Q R V - R - A E Q G R G R R V S S : - E K Y R E C K D E P S . . . . . . 91647 GCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCG A A A A V K G G K K K G A S F V I D C S Q Q Q Q - R A G R R R G Q A S S L T V R S S S S S E G R E E E G G K L R H - L F . . . . . . 91587 AAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGG K P V E D S I M E I A S L D K F L Q E R S R - K T V S W R L L L L T S S F K R G E A G R R Q Y H G D C F S - Q V P S R E . . . . . . 91527 ATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAG I K V G G K A G A L G D S V T V T R D K L R L V E K L V L L G I P L L L L V T R D - G W W K S W C S W G F R Y C Y S - Q . . . . . : . 91467 AACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTC N K I T V T C N S T F S K R : Y L K Y L V T R S P S P A T Q L F P R : G T S N T L S E Q D H R H L Q L N F F Q E : V P Q I P C . . . . . . 88914 AAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAG K K Y L K K N N V R D W L R V I A S N K K S T - R K I T S G I G L G - L L P T R Q K V L E E K - R Q G L A - G D C F Q Q . . . . . . 88854 GACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAA D R N V Y E L R Y F N I A E N E A D E E T G M F T N C A T S T L L R M K Q M K K G Q E C L R I A L L Q H C - E - S R - R . . . . . 88794 GATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT D - T - P F N V S L Y L L S I K H D H S M S L F I F F L R L N M T I Q C L S L S S F F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-16_AGS-3_PPS_1 (91798 91775,91683 91427,88933 88789) (frame '1'; 423 bp, 141 residues) 1 AVDVEFHPKR NTESVKMSRA AAAAVKGGKK KGASFVIDCS KPVEDSIMEI ASLDKFLQER 61 IKVGGKAGAL GDSVTVTRDK NKITVTCNST FSKRYLKYLV KKYLKKNNVR DWLRVIASNK 121 DRNVYELRYF NIAENEADEE D- AGS-4 (90173 89956) SCR (e 0.907) Exon 1 90173 89956 ( 218 n); score: 0.907 PGS (90173 89956) SGN-E371571+ PGS (90173 89956) SGN-E370504+ PGS (90173 89956) SGN-E280629+ PGS (90170 89956) SGN-E391217+ 3-phase translation of AGS-4 (-strand): . . . . . . 90173 TTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAA L - L L Y T Y R L - M I N I N - L D I - Y N Y Y I H I D Y R - - I L I N W I F N I I I I Y I - I I D D K Y - L I G Y L . . . . . . 90113 TTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATC L E I N L - K S K S H - P F N - I Y T I - K S I F R S L K V I N L L I K F I Q S I R N Q S L E V - K S L T F - L N L Y N . . . . . . 90053 AAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACT K Y L N I L - Q F N L - E G - N C N S T N I - I F Y N N L I Y R R G K T V I Q L Q I F K Y F I T I - F I G G V K L - F N . . . . 89993 TTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGAT F N F F C - C F - - Y M S T F F V D A F S N T - F Q L F L L M L L V I H D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 89956 ATCATGTATTACTAAAAGCATCAACAAAAAAAGTTGAAAGTTGAATTACAGTTTTACCCC I M Y Y - K H Q Q K K L K V E L Q F Y P S C I T K S I N K K S - K L N Y S F T P H V L L K A S T K K V E S - I T V L P . . . . . . 90016 TCCTATAAATTAAATTGTTATAAAATATTTAAATATTTGATTGTATAAATTTAATTAAAA S Y K L N C Y K I F K Y L I V - I - L K P I N - I V I K Y L N I - L Y K F N - K L L - I K L L - N I - I F D C I N L I K . . . . . . 90076 GGTTAATGACTTTTAGACTTCTAAAGATTGATTTCTAATTAAATATCCAATTAATTAATA G - - L L D F - R L I S N - I S N - L I V N D F - T S K D - F L I K Y P I N - Y R L M T F R L L K I D F - L N I Q L I N . . . . 90136 TTTATCATCTATAATCTATATGTATATAATAATTATAA F I I Y N L Y V Y N N Y L S S I I Y M Y I I I I I Y H L - S I C I - - L - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (90978 90403) SCR (e 0.773) Exon 1 90978 90403 ( 576 n); score: 0.773 PGS (90790 90403) SGN-E317264+ PGS (90978 90527) SGN-E301078- PGS (90908 90534) SGN-E301194- 3-phase translation of AGS-5 (-strand): . . . . . . 90978 ATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTAC I Y V N - - I I - C N N Y K I R I K T Y Y M - I N E - Y N V T I T K - E - R L T I C K L M N N I M - Q L Q N K N K D L . . . . . . 90918 GCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGA A I K Y S - K N - I K K S D G D K N K R Q - N I H K K T K L R S L M V I K I K D R N K I F I K K L N - E V - W - - K - K . . . . . . 90858 CAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGT Q K K D R F K N D P M - T M F L - D - C K K K T D L R M I Q C K Q C S Y K T D V T K K R Q I - E - S N V N N V L I R L M . . . . . . 90798 ATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATAT M Y R - K K - V H N S L S S Y R L L S Y C I D E K N K Y I T L - V L I D S F H I Y V - M K K I S T - L S E F L S T P F I . . . . . . 90738 CCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCT P I K I Q E V S S S T L T I E - K - - P L S K F K R F L H L L - L L N E N D S L S Y Q N S R G F F I Y F N Y - M K M I A . . . . . . 90678 AGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGA S N L G R G F M R L K K L N L Y R - N R V I L V G V S - D - K S - I Y I D R I E - - S W - G F H E I K K V E F I - I E - . . . . . . 90618 AGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAA R N I K R Y I K V L V - I F G G Y E Y E G I S K D I L K F - F K Y L E V M N M K K E Y Q K I Y - S F S L N I W R L - I - . . . . . . 90558 AAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAAT K M R V M N I K S I K L N K - L T N N N R - E L - I L R V - S - I S N - Q I I I K D E S Y E Y - E Y K V E - V I N K - - . . . . . . 90498 AAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAAC K - M K N M K K E V K I S K P C R K N N N K - R I - K K K L K L A N H V E R T T - I N E E Y E K R S - N - Q T M - K E Q . . . . 90438 TAAAGGTCTTATCACGTAATTAAGCGTTAATAAATT - R S Y H V I K R - - I K G L I T - L S V N K L K V L S R N - A L I N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (+strand): . . . . . . 90403 AATTTATTAACGCTTAATTACGTGATAAGACCTTTAGTTGTTCTTTCTACATGGTTTGCT N L L T L N Y V I R P L V V L S T W F A I Y - R L I T - - D L - L F F L H G L L F I N A - L R D K T F S C S F Y M V C . . . . . . 90463 AATTTTAACTTCTTTTTTCATATTCTTCATTTATTTATTATTATTTGTTAATTACTTATT N F N F F F H I L H L F I I I C - L L I I L T S F F I F F I Y L L L F V N Y L F - F - L L F S Y S S F I Y Y Y L L I T Y . . . . . . 90523 CAACTTTATACTCTTAATATTCATAACTCTCATCTTTTCATATTCATAACCTCCAAATAT Q L Y T L N I H N S H L F I F I T S K Y N F I L L I F I T L I F S Y S - P P N I S T L Y S - Y S - L S S F H I H N L Q I . . . . . . 90583 TTAAACTAAAACTTTAATATATCTTTTGATATTCCTTCTATTCTATCTATATAAATTCAA L N - N F N I S F D I P S I L S I - I Q - T K T L I Y L L I F L L F Y L Y K F N F K L K L - Y I F - Y S F Y S I Y I N S . . . . . . 90643 CTTTTTTAATCTCATGAAACCCCTACCAAGATTACTAGGCTATCATTTTCATTCAATAGT L F - S H E T P T K I T R L S F S F N S F F N L M K P L P R L L G Y H F H S I V T F L I S - N P Y Q D Y - A I I F I Q - . . . . . . 90703 TAAAGTAGATGAAGAAACCTCTTGAATTTTGATAGGATATGAAAGGAGTCGATAAGAACT - S R - R N L L N F D R I - K E S I R T K V D E E T S - I L I G Y E R S R - E L L K - M K K P L E F - - D M K G V D K N . . . . . . 90763 CAGAGAGTTATGTACTTATTTTTTTCATCTATACATACATCAGTCTTATAAGAACATTGT Q R V M Y L F F S S I H T S V L - E H C R E L C T Y F F H L Y I H Q S Y K N I V S E S Y V L I F F I Y T Y I S L I R T L . . . . . . 90823 TTACATTGGATCATTCTTAAATCTGTCTTTTTTTTGTCTTTTATTTTTATCACCATCAGA L H W I I L K S V F F L S F I F I T I R Y I G S F L N L S F F C L L F L S P S D F T L D H S - I C L F F V F Y F Y H H Q . . . . . . 90883 CTTCTTAATTTAGTTTTTTTATGAATATTTTATTGCGTAAGTCTTTATTCTTATTTTGTA L L N L V F L - I F Y C V S L Y S Y F V F L I - F F Y E Y F I A - V F I L I L - T S - F S F F M N I L L R K S L F L F C . . . . 90943 ATTGTTACATTATATTATTCATTAATTTACATATAT I V T L Y Y S L I Y I Y L L H Y I I H - F T Y N C Y I I L F I N L H I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (- strand): 95387 92525 AGS-1 (95325 95311,95230 94962,92928 92525) SCR (e 1.000 d 0.876 a 0.992,e 1.000 d 0.999 a 0.998,e 1.000) Exon 1 95325 95311 ( 15 n); score: 1.000 Intron 1 95310 95231 ( 80 n); Pd: 0.876 Pa: 0.992 Exon 2 95230 94962 ( 269 n); score: 1.000 Intron 2 94961 92929 (2033 n); Pd: 0.999 Pa: 0.998 Exon 3 92928 92525 ( 404 n); score: 1.000 PGS (95228 94962,92928 92525) SGN-E371903- PGS (95093 94962,92928 92530) SGN-E551726+ PGS (95017 94962,92928 92537) SGN-E551822+ PGS (95017 94962,92928 92537) SGN-E553003+ PGS (95216 94962,92928 92563) SGN-E345647+ PGS (95022 94962,92928 92568) SGN-E352396+ PGS (92928 92576) SGN-E287536+ PGS (95212 94962,92928 92578) SGN-E353870+ PGS (95325 95311,95230 94962,92928 92609) SGN-E272167+ PGS (95025 94962,92928 92632) SGN-E219375- PGS (95152 94962,92928 92636) SGN-E284720- PGS (95318 95311,95230 94962,92928 92641) SGN-E336142+ PGS (95186 94962,92928 92645) SGN-E335016+ PGS (95230 94962,92928 92689) SGN-E357774+ PGS (95227 94962,92928 92713) SGN-E285777+ PGS (95216 94962,92928 92725) SGN-E306494+ PGS (95216 94962,92928 92780) SGN-E276642+ 3-phase translation of AGS-1 (-strand): . . : . . . . 95325 CGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGC R R I S P : Y L N S S R R E I K S V K M S V E F L P : I - I A A E E K S R A - R - A S N F S : L F E - Q Q K R N Q E R K D E . . . . . . 95185 CGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGT R A A A A V K G G K K K G A S F V I D C E Q Q Q Q - R A G R R R G Q A S S S T V P S S S S S E G R E E E G G K L R H R L . . . . . . 95125 TCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAG S K P V E D S I M E I A S L D K F L Q E R S Q W R T V L W R L L L L T S S S K R F E A S G G Q Y Y G D C F S - Q V P P R . . . . . . 95065 AGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGAT R I K V G G K A G A L G D S V T V T R D E L R L V E K L V H L E I P L L S L V I E N - G W W K S W C T W R F R Y C H S - . . . . . : . 95005 AAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTT K N K I T V T C N S T F S K R : Y L K Y L R I K S P S L A T P L F P R : G T S N T L - E - N H R H L Q L H F F Q E : V P Q I P . . . . . . 92912 GTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAAC V K K Y L K K N N V R D W L R V I A S N S K S T - R K T T L G I G L G - L L P T C Q K V L E E K Q R - G L A - G D C F Q . . . . . . 92852 AAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAA K D R N V Y E L R Y F N I A E N E A D E R T G M F M S C A T S T L P R M K Q M K Q G Q E C L - V A L L Q H C R E - S R - . . . . . . 92792 GAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCAT E D - T C L V N V P F I F L F - T L Y H K I K H V - S M S L L S S Y F E P Y I I R R L N M S S Q C P F Y L L I L N L I S . . . . . . 92732 CTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCC L F E L L M S R I F S F P D Y - F F V P C L S Y - - A V S S H F Q I I D F L S P S V - V I N E P Y L L I S R L L I F C P . . . . . . 92672 TTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAG L S V K E N V T L I H F G L F I S G V K Y Q - K K T L L - Y T L V C S S L G S S L I S K R K R Y F D T L W F V H L W G Q . . . . . . 92612 TTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATT F L Q G I N F S V L P F P S - - S H V I F C K A S I S L Y C L F P L D D H M - F V F A R H Q F L C I A F S L L M I T C N . . . 92552 TATAGAGTTTATCTTTTGTTGTTCTTGT Y R V Y L L L F L I E F I F C C S C L - S L S F V V L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-17_AGS-1_PPS_1 (95325 95311,95230 94962,92928 92784) (frame '1'; 426 bp, 142 residues) 1 RRISPYLNSS RREIKSVKMS RAAAAVKGGK KKGASFVIDC SKPVEDSIME IASLDKFLQE 61 RIKVGGKAGA LGDSVTVTRD KNKITVTCNS TFSKRYLKYL VKKYLKKNNV RDWLRVIASN 121 KDRNVYELRY FNIAENEADE ED- AGS-2 (95387 95324,95230 94962,92928 92747) SCR (e 0.776 d 0.000 a 0.992,e 0.857 d 0.999 a 0.998,e 0.920) Exon 1 95387 95324 ( 64 n); score: 0.776 Intron 1 95323 95231 ( 93 n); Pd: 0.000 Pa: 0.992 Exon 2 95230 94962 ( 269 n); score: 0.857 Intron 2 94961 92929 (2033 n); Pd: 0.999 Pa: 0.998 Exon 3 92928 92747 ( 182 n); score: 0.920 PGS (95387 95324,95230 94962,92928 92747) SGN-E287412+ PGS (95372 95324,95230 94962,92928 92791) SGN-E338914+ 3-phase translation of AGS-2 (-strand): . . . . . . 95387 AGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCC R N E E N P N - I - S S T S I H S Q S A G T R K T L I K Y N H P L P Y T R S R P E R G K P - L N I I I H F H T L A V G . : . . . . . 95327 GCCG : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGC A : V F E - Q Q K R N Q E R K D E P S S S P : Y L N S S R R E I K S V K M S R A A A R R : I - I A A E E K S R A - R - A E Q Q . . . . . . 95174 AGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGT S S E G R E E E G G K L R H R L F E A S A V K G G K K K G A S F V I D C S K P V Q Q - R A G R R R G Q A S S S T V R S Q . . . . . . 95114 GGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGT G G Q Y Y G D C F S - Q V P P R E N - G E D S I M E I A S L D K F L Q E R I K V W R T V L W R L L L L T S S S K R E L R . . . . . . 95054 TGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAAT W W K S W C T W R F R Y C H S - - E - N G G K A G A L G D S V T V T R D K N K I L V E K L V H L E I P L L S L V I R I K . . . . : . . 94994 CACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTA H R H L Q L H F F Q E : V P Q I P C Q K V T V T C N S T F S K R : Y L K Y L V K K Y S P S L A T P L F P R : G T S N T L S K S . . . . . . 92901 CTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAA L E E K Q R - G L A - G D C F Q Q G Q E L K K N N V R D W L R V I A S N K D R N T - R K T T L G I G L G - L L P T R T G . . . . . . 92841 TGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAAC C L - V A L L Q H C R E - S R - R R L N V Y E L R Y F N I A E N E A D E E D - T M F M S C A T S T L P R M K Q M K K I K . . . . 92781 ATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTT M S S Q C P F Y L L I C L V N V P F I F L F H V - S M S L L S S Y F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1-_PGL-17_AGS-2_PPS_1 (95386 95324,95230 94962,92928 92784) (frame '2'; 474 bp, 158 residues) 1 GTRKTLIKYN HPLPYTRSRP PYLNSSRREI KSVKMSRAAA AVKGGKKKGA SFVIDCSKPV 61 EDSIMEIASL DKFLQERIKV GGKAGALGDS VTVTRDKNKI TVTCNSTFSK RYLKYLVKKY 121 LKKNNVRDWL RVIASNKDRN VYELRYFNIA ENEADEED- AGS-3 (93739 93086) SCR (e 0.989) Exon 1 93739 93086 ( 654 n); score: 0.989 PGS (93739 93086) SGN-E215051+ 3-phase translation of AGS-3 (-strand): . . . . . . 93739 GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGG E H - L D C L A P P T S Q - S R F L S R S I S - I V W L L P L L S E V D S - V G A L A R L F G S S H F S V K - I L K - . . . . . . 93679 CGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTG R L L M R P I R L Q P S L S L V S I S L G C - - D Q L D C N L A F H L C P L V C A V V D E T N - T A T - P F T C V H - F . . . . . . 93619 CGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACAC R Q V Q F C - F H L L H P - S H R I V H V K C N F V D F I F Y I H N H T E - Y T A S S A I L L I S S F T S I I T Q N S T . . . . . . 93559 TTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTG L D Y V K L H V K - A W K N - Y V L S L W I M S N Y M - N R L G R T N M Y - V C L G L C Q I T C E I G L E E L I C I K F . . . . . . 93499 TAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAAT - L E R D R - L T C K Q A - L - V I D N N L K E I G N - H V S R L S Y R - L I I V T - K R - V T N M - A G L V I G N - - . . . . . . 93439 ATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATT I D H Y R C S C - L K H P S G R V K H I L I I I D A L A N - N I L Q G V - S I F Y - S L - M L L L T E T S F R A C K A Y . . . . . . 93379 TTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCA F M Y F L L G S E E S L H F L C K F D A S C I F C W V L K K V F I F Y V S L M Q F H V F F V G F - R K S S F F M - V - C . . . . . . 93319 GCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTC A E - N L - W Y S C F I - C M F L S L F L S R I Y S G I L V S S D V C F - A C S S - V E S I V V F L F H L M Y V S K L V . . . . . . 93259 TGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAG W K - H Q P L I S I T I Y L A H F W F K G S D I N H L L A S P F T - H I F G S S L E V T S T T Y - H H H L P S T F L V Q . . . . . . 93199 TGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAA - - S K G Y L - K K L I L - R E P N V Q D S P K A T C K R N - Y S K E N Q M S N V I V Q R L L V K E T D T L K R T K C P . . . . . . 93139 CATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG H I Y H I T F F F L Q F L Y A R L M I F I I L L F F F C N F C M R D - T Y L S Y Y F F F F A I S V C A I N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 93086 CATTAATCGCGCATACAGAAATTGCAAAAAAAAAAAAGTAATATGATAAATATGTTGGAC H - S R I Q K L Q K K K S N M I N M L D I N R A Y R N C K K K K V I - - I C W T L I A H T E I A K K K K - Y D K Y V G . . . . . . 93146 ATTTGGTTCTCTTTAGAGTATCAGTTTCTTTTACAAGTAGCCTTTGGACTATCACTTGAA I W F S L E Y Q F L L Q V A F G L S L E F G S L - S I S F F Y K - P L D Y H L N H L V L F R V S V S F T S S L W T I T - . . . . . . 93206 CCAAAAATGTGCTAGGTAAATGGTGATGCTAATAAGTGGTTGATGTCACTTCCAGAACAA P K M C - V N G D A N K W L M S L P E Q Q K C A R - M V M L I S G - C H F Q N K T K N V L G K W - C - - V V D V T S R T . . . . . . 93266 GCTTAGAAACATACATCAGATGAAACAAGAATACCACTATAGATTCTACTCAGCTGCATC A - K H T S D E T R I P L - I L L S C I L R N I H Q M K Q E Y H Y R F Y S A A S S L E T Y I R - N K N T T I D S T Q L H . . . . . . 93326 AAACTTACATAAAAAATGAAGACTTTCTTCAGAACCCAACAAAAAATACATGAAAATATG K L T - K M K T F F R T Q Q K I H E N M N L H K K - R L S S E P N K K Y M K I C Q T Y I K N E D F L Q N P T K N T - K Y . . . . . . 93386 CTTTACACGCCCTGAAGGATGTTTCAGTTAGCAAGAGCATCTATAATGATCAATATTATC L Y T P - R M F Q L A R A S I M I N I I F T R P E G C F S - Q E H L - - S I L S A L H A L K D V S V S K S I Y N D Q Y Y . . . . . . 93446 AATTACCTATAACTAAGCCTGCTTACATGTTAGTTACCTATCTCTTTCAAGTTACAAACT N Y L - L S L L T C - L P I S F K L Q T I T Y N - A C L H V S Y L S L S S Y K L Q L P I T K P A Y M L V T Y L F Q V T N . . . . . . 93506 TAATACATATTAGTTCTTCCAAGCCTATTTCACATGTAATTTGACATAATCCAAGTGTAC - Y I L V L P S L F H M - F D I I Q V Y N T Y - F F Q A Y F T C N L T - S K C T L I H I S S S K P I S H V I - H N P S V . . . . . . 93566 TATTCTGTGTGATTATGGATGTAAAAGATGAAATCAACAAAATTGCACTTGACGCAAACT Y S V - L W M - K M K S T K L H L T Q T I L C D Y G C K R - N Q Q N C T - R K L L F C V I M D V K D E I N K I A L D A N . . . . . . 93626 AATGGACACAAGTGAAAGGCTAGGTTGCAGTCTAATTGGTCTCATCAACAACCGCCTACT N G H K - K A R L Q S N W S H Q Q P P T M D T S E R L G C S L I G L I N N R L L - W T Q V K G - V A V - L V S S T T A Y . . . . . . 93686 TAAGAATCTACTTCACTGAGAAGTGGGAGGAGCCAAACAATCTAGCTAATGCTC - E S T S L R S G R S Q T I - L M L K N L L H - E V G G A K Q S S - C L R I Y F T E K W E E P N N L A N A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 18 (+ strand): 99746 100626 AGS-1 (99746 100302,100425 100515,100594 100626) SCR (e 1.000 d 0.490 a 0.818,e 1.000 d 0.823 a 0.999,e 1.000) Exon 1 99746 100302 ( 557 n); score: 1.000 Intron 1 100303 100424 ( 122 n); Pd: 0.490 Pa: 0.818 Exon 2 100425 100515 ( 91 n); score: 1.000 Intron 2 100516 100593 ( 78 n); Pd: 0.823 Pa: 0.999 Exon 3 100594 100626 ( 33 n); score: 1.000 PGS (99746 100171) SGN-E243373+ PGS (100105 100302,100425 100515,100594 100626) SGN-E200441+ PGS (100132 100302,100425 100515,100594 100626) SGN-E267197+ PGS (100429 100515,100594 100626) SGN-E265486+ 3-phase translation of AGS-1 (+strand): . . . . . . 99746 TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATT F Q L Q I Y L S I E L F L L H S E L E I F N Y K S I - V L S Y F Y F I L N - R F S T T N L F E Y - V I F T S F - I R D . . . . . . 99806 TCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAA S N L S L L N I K S F W I Q I F L K I K R I - V F - I - R V F G S K S F - K - N F E F E S F E Y K E F L D P N L F E N K . . . . . . 99866 TATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAA Y F E F K S L C V Y S N F Y F I L N - K I S S L N L C A Y T V I F T L F - I R N I F R V - I F V R I Q - F L L Y S K L E . . . . . . 99926 TTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAA F - I - I F - Y K K K L N C K F - F N Q F K F K F F S T K K N - I A N F N L I K I L N L N F L V Q K K I K L Q I L I - S . . . . . . 99986 ACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTAT T S I - I - G - K S P N T L L L I I S Y L Q Y K Y K V K N P R I H F S S S Y L I N F N I N I R L K I P E Y T S P H H I L . . . . . . 100046 ATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCT I F I Y L Y L S V Y I P T S Q V H F I P Y L S I Y I F L Y I F Q L L R S T L S L Y I Y L F I S F C I Y S N F S G P L Y P . . . . . . 100106 CTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTT L P V F Q E F N I L L Y F Y R I N N H F S L F S K N S I S Y Y T F I V S I I T F S P C F P R I Q Y L T I L L S Y Q - S L . . . . . . 100166 TTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCAT F S V K I I A S I R P - Y T D L L L T H S L - K - L H L - G H N T Q I C Y L P M F L C K N N C I Y K A I I H R S V T Y P . . . . . . 100226 GAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGG E C - V T F L S W D L V I F S E N I Q W N V E S H F - V G I W L F F L K I Y N G - M L S H I S E L G F G Y F F - K Y T M . . : . . . . 100286 GTGTTGAATATCATGAG : GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTA V L N I M R : Y L - G I Q E V Y N S S L V C - I S - : G I Y K E F K R C T T L H L - G V E Y H E : V F I R N S R G V Q L F T C . . . . . : . 100468 GATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG : GTTATGGCATGG D G C P F L L Q K L L F S F A M : V M A W M V A L F F S K S S C F P L P W : L W H G R W L P F S S P K A L V F L C H : G Y G M . . . 100606 AATGCAGTAGATTCATGAGAG N A V D S - E M Q - I H E E C S R F M R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0278J12.1+_PGL-18_AGS-1_PPS_1 (99963 100175) (frame '2'; 210 bp, 70 residues) 1 IANFNLIKLQ YKYKVKNPRI HFSSSYLIYL SIYIFLYIFQ LLRSTLSLSL FSKNSISYYT 61 FIVSIITFSL - PGL 19 (+ strand): 101514 102080 AGS-1 (101514 102080) SCR (e 0.996) Exon 1 101514 102080 ( 567 n); score: 0.996 PGS (101514 101995) SGN-E537921+ PGS (101515 102080) SGN-E265769+ 3-phase translation of AGS-1 (+strand): . . . . . . 101514 GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTG A N W L A - D - S G V S C - L S W Q Y V P T G L L E I E V E F H V S Y L G S M C Q L A C L R L K W S F M L A I L A V C . . . . . . 101574 CATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACA H Y V Y L V V G Y Y Y T R I S F L - G T I M F I W L W D I I I Q E Y L F Y R A Q A L C L S G C G I L L Y K N I F F I G H . . . . . . 101634 ATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAA I I G D I - - C N C - E L V V K N A T K L L V I Y N N A I V R S - - L K M Q R K N Y W - Y I I M Q L L G A S S - K C N E . . . . . . 101694 AATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATAC N G S Q I E C Q T E N S P N I L I L S Y M V L K L N A R L K T H L T Y - S S H T K W F S N - M P D - K L T - H T D P L I . . . . . . 101754 TGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATA - R Y Y R F A E T K - F L P L N N I L I E G T I D L L K Q S N F Y P - I T S L Y L K V L - I C - N K V I F T L E - H P Y . . . . . . 101814 TGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAA W F T A A - L V C F L S F F G - F A N - G L Q L H D - S V S C P F L V N L L I N M V Y S C M I S L F L V L F W L I C - L . . . . . . 101874 CAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGG Q L C W N F I V C L L K - G G L M V C W S Y V G T S L F A Y - N K E D - W F A G T A M L E L H C L P T K I R R I N G L L . . . . . . 101934 TAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGAT - V G - L L R N I I K L K V L S W - F D R L V D Y - E T - - N - K S Y L G S L I V G W L T I E K H N K I K S P I L V V - . . . . . . 101994 AGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTT R L I R L A N - L G P I S N L N - R L L D - L G - Q I S W A L - V T S I K D C F - I N - V S K L V G P Y K - P Q L K I A . . . 102054 CACACACCAAAATTTGTGGGACACTTT H T P K F V G H F T H Q N L W D T S H T K I C G T L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 102080 AAAGTGTCCCACAAATTTTGGTGTGTGAAGCAATCTTTAATTGAGGTTACTTATAGGGCC K V S H K F W C V K Q S L I E V T Y R A K C P T N F G V - S N L - L R L L I G P S V P Q I L V C E A I F N - G Y L - G . . . . . . 102020 CAACTAATTTGCTAACCTAATTAATCTATCAAACTACCAAGATAGGACTTTTAATTTTAT Q L I C - P N - S I K L P R - D F - F Y N - F A N L I N L S N Y Q D R T F N F I P T N L L T - L I Y Q T T K I G L L I L . . . . . . 101960 TATGTTTCTCAATAGTCAACCAACCTACCAGCAAACCATTAATCCTCCTTATTTTAGTAG Y V S Q - S T N L P A N H - S S L F - - M F L N S Q P T Y Q Q T I N P P Y F S R L C F S I V N Q P T S K P L I L L I L V . . . . . . 101900 GCAAACAATGAAGTTCCAACATAGCTGTTAATTAGCAAATTAACCAAAAAAGGACAAGAA A N N E V P T - L L I S K L T K K G Q E Q T M K F Q H S C - L A N - P K K D K K G K Q - S S N I A V N - Q I N Q K R T R . . . . . . 101840 ACAGACTAATCATGCAGCTGTAAACCATATAAGGATGTTATTCAAGGGTAAAAATTACTT T D - S C S C K P Y K D V I Q G - K L L Q T N H A A V N H I R M L F K G K N Y F N R L I M Q L - T I - G C Y S R V K I T . . . . . . 101780 TGTTTCAGCAAATCTATAGTACCTTCAGTATGAGAGGATCAGTATGTTAGGTGAGTTTTC C F S K S I V P S V - E D Q Y V R - V F V S A N L - Y L Q Y E R I S M L G E F S L F Q Q I Y S T F S M R G S V C - V S F . . . . . . 101720 AGTCTGGCATTCAATTTGAGAACCATTTTTCGTTGCATTTTTAACTACTAGCTCCTAACA S L A F N L R T I F R C I F N Y - L L T V W H S I - E P F F V A F L T T S S - Q Q S G I Q F E N H F S L H F - L L A P N . . . . . . 101660 ATTGCATTATTATATATCACCAATAATTGTGCCCTATAAAAAAGATATTCTTGTATAATA I A L L Y I T N N C A L - K R Y S C I I L H Y Y I S P I I V P Y K K D I L V - - N C I I I Y H Q - L C P I K K I F L Y N . . . . . . 101600 ATATCCCACAACCAGATAAACATAATGCACATACTGCCAAGATAGCTAACATGAAACTCC I S H N Q I N I M H I L P R - L T - N S Y P T T R - T - C T Y C Q D S - H E T P N I P Q P D K H N A H T A K I A N M K L . . . 101540 ACTTCAATCTCAAGCAAGCCAGTTGGC T S I S S K P V G L Q S Q A S Q L H F N L K Q A S W Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 12:45:01 2006