<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:32:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="8369" stop="7030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8069" g_stop="7330" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8069" e_stop="7330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCGACCGCTTCTAATGGACACAGGTTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCGATAACCAATAAAGTGGTGGACGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGCACAAATCGCAACAGTCATTTGACGAAGGAGATATGTGAGCAATTTAAGATTGTTCATCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTTTGAGAAAAATGATCGACAAACAGCGAGGTTGGCATGAAATGTTGCCATATGCTTTGCTAGGTTATCAAACAACGGTCAGAACATCGACTGGGTCTACTCCATACTTGCTAGTATATGGAACAGAAGAAGTCATTCCTGTTGAAGTCGAGATACCGTCGTTGAGGATCATCCAAGAAACTGAATTAAGTAATGCCGAATGGATTAGTAAACGGATTCATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCACCGTTTGCCATGGTCA-TTTTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGT-TGCGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372777" ref_strand="+" ref_description="SGN-E372777 [TUS-32-L20](-)">
      <seq>gaaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="22237" stop="23090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22537" g_stop="22784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="262"/>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E372777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22537" e_stop="22784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294067" ref_strand="+" ref_description="SGN-E294067 [cLET-13-K21]">
      <seq>aaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="22238" stop="23090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22538" g_stop="22784" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="250" polyA_stop="262"/>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E294067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22538" e_stop="22784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372778" ref_strand="+" ref_description="SGN-E372778 [TUS-32-L20]">
      <seq>aaaaaccactttgagagcaaagtaagatattctgtagactatacaagaaaaagtagtttgtgaagaaaaatacagtgtgagtgatattttagtaagatgaaaaccaaaagagtgttgttccttttgagtgtgtagtagtcactttgagtattgtatttgtgactacacgatgtaaaattccttactatagtaatatcagttgctcttcttggcccgcagttttttccttattgagaagggtttccacgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="22238" stop="23090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22538" g_stop="22784" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="250" polyA_stop="262"/>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E372778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22538" e_stop="22784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</genome_strand>
        <mrna_strand>AAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="35972" stop="36974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36272" g_stop="36675" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36272" e_stop="36675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAACGAATGATATTTATTTATAATACTGTAAAGCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAATTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGATAAGAAAGAATGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGAGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="36291" stop="37304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36767" g_stop="37004" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36767" e_stop="37004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTAGCGACACAAGAGAAATAAAGATAATGAATCTTAAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCGAACGAGTATGGTATTGAGGCTTGAGTTCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="36292" stop="37546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36768" g_stop="37246" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36768" e_stop="37246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTAGCGACACAAGAGAAATAAAGATAATGAATCTTAAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCGAACGAGTATGGTATTGAGGCTTGAGTTCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTATTTTCTTCTTGTTTATTTGTGGACTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTA-TGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="36901" stop="37708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37201" g_stop="37404" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37201" e_stop="37404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCGTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTCAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTGGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTT</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTT-AGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="37255" stop="38140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37555" g_stop="37840" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37555" e_stop="37840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCATTGGTCTGATCACACAAGAAGGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTATTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCAAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38579" stop="37547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38279" g_stop="37847" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38279" e_stop="37847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTTTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTAATCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="37614" stop="38767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37914" g_stop="38467" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37914" e_stop="38467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATTCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCATTCTTCAAAGGTGCTGAATCTGGGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGTCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38936" stop="37618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38637" g_stop="37918" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38637" e_stop="37918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGACCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCCCAGATTCAGCACCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCT-TACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38934" stop="37671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38634" g_stop="37971" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38634" e_stop="37971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGACCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCCCAGATTCAGCACCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39574" stop="38185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39274" g_stop="38485" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39274" e_stop="38485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39498" stop="38201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39198" g_stop="38501" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39198" e_stop="38501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="+" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="38241" stop="40254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38541" g_stop="38715" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38716" i_stop="39459" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39460" g_stop="39946" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="662" r_length="487" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38541" e_stop="38715"/>
          <exon e_start="39460" e_stop="39946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTACTCAGTTCGACCCATTCAGTCTTTACTACAGACTGTAGTTGGGGGTCCACATCAGACCGGTCAACATTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAATAGAGTTATAGACCCCCAATAGCTAGAGGAAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACAGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGAAAGACAAACGATAGTGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCTTATTTTCTTATGTATCTTCCTCCTTTGCTAATGGTCTTAATTTACATTGTGAATTACTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTATGGGGAGCAATACTCTTGTAGATTTGGTTATCTTAAAAATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGGTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATATCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGATTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTTTAA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39654" stop="38342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39354" g_stop="38591" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39354" e_stop="38591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTG-TGGACTGAAACAAAGTTGAGTGGCATATTTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39572" stop="38439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39272" g_stop="38739" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39272" e_stop="38739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39658" stop="38500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39358" g_stop="38800" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39358" e_stop="38800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40265" stop="38907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39207" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="39865" stop="38939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39565" g_stop="39235" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39565" e_stop="39235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40265" stop="39008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39308" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40337" stop="39096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40037" g_stop="39379" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40037" e_stop="39379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGT-TACAAGACAAGACCTATACACCTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40786" stop="39508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40486" g_stop="39807" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40486" e_stop="39807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40857" stop="39545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40557" g_stop="39845" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40557" e_stop="39845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40857" stop="39662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40557" g_stop="39962" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40557" e_stop="39962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40857" stop="39732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40557" g_stop="40032" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40557" e_stop="40032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="40786" stop="39828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40486" g_stop="40128" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40486" e_stop="40128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205772" ref_strand="+" ref_description="SGN-E205772 [cLEC-20-A1]">
      <seq>aacaatttgttaatttaaatccattagccactcttgctcatcttttaagtatcttgttggattttatttgccctgatttcttaccataaataggttttccttttaggaaaaggttttgaattgactaatccttttcttgtaggaaaaggtttaggactctataaatagatgaatattccttttaacttaatcagcattcacaatgtactcttacaggctttgagagttttggttagagggagaatctgtgggtcacaagcttgatatgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgattctctctgtattttgtactcttatatttatagtggattgctcatctcctttgtggacgtaggttgattgaccgaaccacgttaaatctttgtgtcttttgatatatttctcgttgtcttcttactcgtggtctttcgaggtttgtattgctagcttccgcgtttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="53564" stop="52551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53294" g_stop="52851" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="490" r_length="444" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E205772" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53294" e_stop="52851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGTGTTGGGTTTTATTTGCCCTAAATTTTATACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCTTAAGGGATTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAATTTGATACGTTATCGCTTCTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTAGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTG-CTTGCTAGCTTCCGCATTTACACC</genome_strand>
        <mrna_strand>AAGTATCTTGTTGGATTTTATTTGCCCTGATTTCT-TACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGATGAATATTCCTTTTAACTTAATCAGCATTCACAATGTACTCTTACAGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTTGAGGTTGATTCTCTCTGTATTTTGTACTCTTATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTTGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGCTAGCTTCCGCGTTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205773" ref_strand="+" ref_description="SGN-E205773 [cLEC-20-A3]">
      <seq>aacaattagttaatttaaatccattagccactcttgctcatcttttaagtatcttgttggattttatttgccctgatttcttaccataaataggttttccttttaggaaaaggttttgaattgactaatccttttcttgtaggaaaaggtttaggactctataaatagatgaatattccttttaacttaatcagcattcacaatgtagtcttacaggctttgagagttttggttagagggagaatctgtgggtcacaagcttgatatgttatcacttgtgtgaacctaccatgtattctgagtgaattggttgaagctgtttctctctgtattttgtactcttatatttatagtggattgctcatctactttgtggacgtaggttgattgaccgaaccacgttaaatctttgtgtcttttgatatatttctcgatggcttcttactcgtggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="53564" stop="52584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53294" g_stop="52884" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="456" r_length="410" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E205773" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53294" e_stop="52884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGTGTTGGGTTTTATTTGCCCTAAATTTTATACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCTTAAGGGATTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAATTTGATACGTTATCGCTTCTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTAGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTT</genome_strand>
        <mrna_strand>AAGTATCTTGTTGGATTTTATTTGCCCTGATTTCT-TACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGATGAATATTCCTTTTAACTTAATCAGCATTCACAATGTAGTCTTACAGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTACCATGTATTCTGAGTGAATTGGTTGAAGCTGTTTCTCTCTGTATTTTGTACTCTTATATTTATAGTGGATTGCTCATCTACTTTGTGGACGTAGGTTGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGATATATTTCTCGATGGCTTCTTACTCGTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722429" ref_strand="+" ref_description="SGN-E722429 [FC17BA06]">
      <seq>gggcgattggcggccaatcggccgaattgaagtttctctcttggtgtctcttggcttcaacaacagccctaaaacaccttagggttcgtgagtatcgtcccacttgttaataaaattttgaaggagagtttcagttcttgaagtatcctctgtgttttctctctttctctatgcaatagtctttgaattccctaaatcttgaaagttgaaggcattattgtcagaaaaatctcctaatttttgaagcttgaagcccaaagaaggtgaatttgtttgctaaattagttcgcggtatgtgcgttgaagatgcattgttacagttgcaagtgacagtaaagcgagcttccaaaactatctatcaggttatacacttagcttgggcaaatgcagtgcatagcgatggatttgattcaaatcgtcttcttgttcgtaaaatgacaaataaaaaatttgcatattttcatctcatttctacccttttggagtacttcttccttatcatgttttgtgcagctgaggcatttcttagaaaaggactttttaagaaaaggttgtccaaccatgctaaaggaaagtatggactgatggtgaggccagaatgtagaatgattgtggtacttagggagataacatcggtggaggaggcggagatagctaagttgagagtaagcaacttcaaaaagctaaccaaacgcaaaaaatgtcttgtccctcataagctcattaagactactccaatatggaacccaaggtgaaagttagaagtagtggcgcaagtattgttggtgaatgagccccgatattatcatagtttaatttttcgttagaaacgtatgcaatcacataagatcagtggttgatgaaaatccactgcatcttgccacatttcttttttgtaagagatgtaacttgacttaatacctgacttctgttttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="69118" stop="63138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68813" g_stop="68593" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="253" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68592" i_stop="64344" i_length="4249">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64343" g_stop="64235" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="362" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64234" i_stop="64017" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64016" g_stop="63438" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="941" r_length="579" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E722429" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68813" e_stop="68593"/>
          <exon e_start="64343" e_stop="64235"/>
          <exon e_start="64016" e_stop="63438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAGGTATTTTCTTTGGATAAAAATATTTCATCTAGTATCTACATCTAAAATAAGTTTATTCCTCCATATTCATCTCCCTCTTCTTCTTTTTTTTGACACAATCTTCCATTTTTCTTTCTGATGATTAAATATTATGTGATTGGGCACTTATTGATACTCATTGTTTTGTTAGCACCTAAAATGGTAGTTTTGTAGGTAAGGTTGGGGGTTTAGGGTCAAAGAGGAGCTAATTGAGAGTTTATTTAAGGAATTTCTCTGTTAAGGTTGCATATTTCTAGGACTGCCAATAATTTTTTGTAAGGCTGGCATTGCAATTTTTTTCTATTAGGCGATGAATTAATTGAGTATTTTTACCATTAGTGTCTTTAATTTCAGTACCTAGTTTGTATGCTTTGATTTTGAATGGTTCTTTTTATTGTATTACCAAGAAATAAAATTGTTAATGAGATTTATTAAAGCATCTTAATTTTTTTTATTTGTTCAATGAGTAGCTTGCGGATTAGATGAGAAAGAAACAAAATTATCATTGAGCTTTTTCGAAACATCTGAAATATTCAGTAGCATTCTAGTTTATTTCTACTTTCTCTTTTTGAAGTTTTTGCAATTTCTTGAACAATATTGATTCGAAACTAGTTGTCAGTCTTCGCTTTCAGTCAATATTTTAAATATATAGTTACTTAGTGATCTATAAAGTTTTCATGAGTTGAATAGTTGAGTTTAGAATCCTTGAGCAAAATGCACTTTAAGAAAGTTGTTGAGAAGTAGTAGTAATTAATTACTACGAGAGAAATTGATTTGTTTCAACACTCTATTGGTTAAAGTTCGTATAATTTAGTTTGAGTGAATTCTATTTCTACTTACTTTTGATCAATTTATTGTATTTTTATTAGTTTAAAGTTAAGTTATCCCAAGAATTTTAAAAGTATGTGTGTCATCTAATATACTTCATAGTAGTTACCTCTTTTTTGGTGTTTAAAATGTTGTTTGAATTGTTCTTTTCTACTTGTGATGCATTTTTGAAATCTTAAGCTACTTGGAAATTCATGTTCTTTGTCATTGTGGTTCTTGATTTCAATTAGATTCTAAATGTTTACTGAAATTGTTTGGATCCTCATGTAGTTTGATTAAAAAAATTGCTTGGATCCTGATTAGGATGATTTGACATGTTTAATAGAAACTAATGTCCATCTTAGTAAGCTTTTTATCCTAAATTATTATTCATCTAACTCTTACATATAATCAGAGGGTATGGCACCGAGTAAAAAATGGATGCAACTTGTTGATGATCGACTAACTGAGGCCTACTTTATGAGGATAGAAATTTTTTTAAATTAAGTTTTTCAAAGAGCAGGAGAAATGTATGAAATACGATGTCCTTATGTCAAATGTTGTTATACCATAGTAGGAACACATGAGACAGTCTGAACACACTTGAAAGTTTATGGAATAATTAAAAATTATACCTTTTGGTATCAAGGAAGTTTTAGGTGAACCAGAATCAGAATGTGAAGATAGGGATGACAATGAAGTAGAAAATTGTGAAAATTAGGATGAAATAAGAGAAATTTTGAGATTTCTATCCTAATCATTATGGACATACTGCATATGTTGATTTTAATGAATCACATGAAGAGGAACCAAATATTAAAGATAAAAAGTTTTATAGCCTATTGGGAGACTTTGATAAGCCACTTTATCAAGGTTCAAAACTTTCAACTTTGATTAAGTTTCTTCACATAAAGTATGGGTCGTTGGAGTAATGAGTCATTTACAATGTTGTCAAAATTTTTAAAAGATGAGGTGTTGCCTGATGAAGCCGGTTTGCCAAATACATATTATAGAGCAAAGAAGATAATTCAGAATCTTGGACTTCCCTGTGAAAGAATTGATGCTTGTAGAAATGATTGCATGTTATATTAGAAGGAGGATAAATTACTTGATTCTTGTAAAGTTTGTGGAGAATCCAGATAAAAAGTCGATAAACGTAATGGGGAAGCAAAGAACAAAAAGGGTAAAAATATAACATCAAAGATTTTGTGTTATTTTCCATTAAAGCCTAGGCTTCAAAGGTTATTTATGTCCTCAAAGACATCTTGTCTAATGAAATGACATCATGATGAAATAGTTGATGATGGATTAATGAGGCACCTAGCTGATTCAACGACATGGGAATTATTTGATAAACTTCATCCTTCATTTGCAGTCGAGCCTCGTAATGTTTGACTTGGACTTGCAAGTGATGGTTTTCAACCATTTTGGAATGCAAAAAAGTCATATAGAATTTGGCCAGTGGTACTTATTCCTTATAATTTACCACCTTGGTTATGTATGAAGCAATAAAACTTTATTATGTCCATGATTATTCCTGGTCCAGATGGTCCAGGTGATGTAATTGACACATATCTTCAACCCTTAATAGAAGAATTGAATGATTTATACATGAAAATTATGCATTTTCTAGGTGAGGGGTCTTATTTACCAAGCTTGCGGTATACACTTTCCCTTGCATTTCAAGGCCATTGTTATGTGTCATCTGTATTTCAAGGCCATTGTTATGTGCCATGCAAGAAACTAACTCCTTTATTGAAATATGACAATACGATCTAAATACTACCTTATTGTACACATTGTTATGATTTATCAAGATGCAATATACACATAAGCTAATAGTTTTAGATATATATAAGGACATATTATCACAATACATTTTTTCTAAATGCTTTCCTTATTTTGACATCATGTTTCCAATTTAGATATGCTGATTTATGTGCCTATTATCTCCTATTCAATTGGTTATCATGACTTACTCTTGCAAACTACAAAAGTCACTTCTTGCTTTTTTCCCATTATTTACTTTTATAACCATGGGGATTTATTCTTTAGTTATCAAATAGCTCACCTGCAAAAATAGAATTTAATTGATTCAAACAGTCCCATTGTTTCTGATTATTATTTTTCTTTCGATAGAGGTTGTCTAGTTCTAGGACATCACTTGCAGACAATGCAACACCAATTTCTTATCCAATATCACCAATGTTAACATCAAGTTCTTCCAGTACTGAAGTAGAGAAAGCAATTTCAAATCCTTCAAAAGTCCAAGCAGTTTTGAAGGGTATAAAATAGGTATGAGATGGCACAACCCTCTGGTTTTGTGAGAATTATATCTTCTCTTGTTCCTTTCTAGGTGGAGTTTCTAATTCTTTCTTCATATCTTCTCTTGTTCCTTTCTAGGTGGAGTTTCTGATTCTTTCTTCTTCGTCTTCTTGATTTTAAGGAAAGTCGCCCTGAACTCCTAAATGTCATCTACCAAATTCACTTCTTACAGCGCAATCATCCATATATCTTTTCTACCAGATTATGTCTGCTAGAGAAGGGACTTGGCCTTATTTATAGGAAAGAGTTATTCACCATTAAGATTGGGTGAGTTGATTTTCTTTTTTGATAACTTGTTGCTGGGGACAAATTACATGCACCTCAACTAAGTCACCCTTTACCTGTGACCTCCCACTAACATAATTATCAGGTAATTTTGCTCACCAAGGCTTAGAGTTTAGACAGATCTGAAGAATTCACCCGTGTGCAGTTTGTACTTTACATCGATTTGCTTGGTCCTCAAGGTTATCACTCTCATACTTTGACCACTAGACCATCCCTCAAGGGCTGAAATATTTATTTTTTCTGAACTCTCTTTGTCATCTTCTCTCAACCTTTTAATAATTTTTATTCCCAATCTATTGTAATCATTTGTACTAGTAAATCTCTCTCCTATAAAAAATGACTAATTTCAAATTATGTATCAATCCATAACACTTCCATCTCTAAATAGTTGTGGTTGCCTTTATGAATCTTCTATGCTCAATAGTTAAACTATAGATGAACTACTTCTTTGACGACTGTTAATTCACTTCAACCCTCCTTTATTTGAGCTTGGAGCCAACTTTACTTTGGGATGATTTATTGTTCTATCATTTGAAGTAGTTTATTGATGTTTTCTACATTTGTAACTTGCCTTTATTTATACCTTGTATATTTGCATTTTTACCAGTCATGAAATCTCCCCTTTAATTGGTTCATAATATTGTTTGATTTTCATAAATTTTTCAAATTTAGAAGTGTGTGGTAGTTATAAAATTTTGTTGTTTGTTGAATTTTGATCGTTAACAATCTTTATTGATATTACTCCATCAGCAACAAATGCTAATAATCCATGACCTGCCATTCTTTTATACTTTAACGTGTTGTTTTTTCATAGCCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAGGTAAGGCCACTGCAGCTATGATATTAAAAGTAATTGTTTGTATGTCAAATATATTGCCTATGGCTCTTTCAAAATAGGAGGTCAAAAGTGTTTCTGTGAGAGTTTTTTCTATCCACAAGACATCACACCAAGTTGTGTCTAACATGAGAATTGAAGTATAAAGAATCTCGTGACTCAAATTTCAAGTGTGTGATATAATGGGAACATTTGTCATGCAGGTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAGATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAACTGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCACAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</genome_strand>
        <mrna_strand>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAG..........................................................................................................................................................................................................................GTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAAATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAAATGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCGCAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335482" ref_strand="+" ref_description="SGN-E335482 [cTOE-2-K11]">
      <seq>ccaaggccagcagggaagaaactggcaggcaccggcaccggcaccggcaccggcagggaagtgtttgtgaatcagaaactcagtcgttagattcagagtaataataataataattcttcacttagtattaaacgggaaaggaattgttgttatcgtgttcaattccatcaatagaattacaataatcatggcgtctgcagtggtagctaacgggaagaagaaattagaacaaagagggcctaaaattggggttattagtggtccgactaatccaatggtgacgcctcttttaacagatctttatcaatttactatggcttatgcttattggaaagctggaaaacacaatgaacgagctgtgtttgacttgtacttccgtaagaatccatttggtggtgaatatacaatatttgctgggttagaagaatgcataaagcttattgctcattacaaattaactgaagaagagatagcttttatcagaaaatcattgcccccatcgtgtgaggatgccttctataactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="104205" stop="101456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103905" g_stop="103546" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103545" i_stop="102775" i_length="771">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102774" g_stop="102627" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="508" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102626" i_stop="101775" i_length="852">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101774" g_stop="101756" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="527" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E335482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103905" e_stop="103546"/>
          <exon e_start="102774" e_stop="102627"/>
          <exon e_start="101774" e_stop="101756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGTGTGAGTACCTGCATATTATTGATTTTCTATCAATTTGTCATGCATTTGATGTGTTTGATATAATGTGCAAATACTAAAATTATTCATTTTGGGAGTTGATAGAGTCTAGAATTGCGATTGATCATTTTCTTCATTGTTGATAGATTATGAATTAATATGATCAATTGGTAAGTATCAACTTGTGGAGATCTCTAACTGTTTAATCATCTGATCAAATGCCTTATTGAAAAAAGCAAAATGGTTAAGCGAAGGGACACATTTAGTTATTAAGTTTATATATGTATGCCTTCTGACGGTTATACATGTGTTGGCTGAAAACTATACTTAAACATGGTTAAAAAATATTTTTTTTTATGTATATATAGTAGAGGTTGAACTCCTTTTGGCTTCATCGCTTTTAGTCATTCATATTTTGAACCTGAACCTGTTTAATGAAAAATATTGGCTCCACCATTGCTTGTCGACATGTGAGTATAATTTATGGACCTAATATGTGGAAGTGTTTGGAGAAATGGCAGGTGTTAAGATTTGAGCTCAAGATATCCGATTGCTCTACCATGTTTAGTTGATGAACCAACTCATCGTTATAGTTTTTAGTGGGACATACTTATTTTTATGTTGATCAGTTCAATTTCGAGAGGGACATCATTAATTTGTTTATTTTTAGTTTACAACAGTAATATTCTTTTTCAGTTGTTGAGAAAATGTTTGTTCATCTAAAATCCAAGTGACCCACTAAATGACTTGTCTTTATTTGGTTGAATATTTCAGGTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAGGTAGATTAATTATTGTCAAAGTAAATAAACAGCTGTAATGTGTGTAAAAGCTATATTTGACGAGAGATAGAAATCTGCTTTTATCTTTTTGTCCTTTTAGGGTTATTCATTGTTTTCTTATTGTTATTATATTATATGTCATTATAGGAAACTTGTGCATGAATTCTGGAGGATTGATGTTTTCTTGTTTCGTGATACCTTAGTGAAATATGATCATGAGCAAAATCTGGGTAATTAATGAGATTATGTAAGCATGAGTGGTTATGAGTGAACTGGTGGCTTATTTCTAGTCGTTACTTTTATTCCAGATGTTGCTTTGTCAACATATCAAAGTGTATCTAGATAATTTTGGCAAAAGCTGTCGTCATATAATTTATTTATCTTGAATTTGGCATATGTTCTTTTGCTGCTATGGATTTTTGGTTAACATAAAGGAAAGTATCTAACCGCGCATCTTCTTTGAGAATTTTTTTTCCTGCTCTCTTGAACATACCATCTCATTCTGTTGAGAAAATCAGGCAGTGTTTCAATATCTCGTCTTCTAGTTGTTTGTGCCTTGATATTACCTTTTCATGTACGCTTGAAGAATTGTTTGACATACTTAGGGCTCTTTCAGTTGGGGAAAGGGTTATCCCGGGATTGTTATATCACCCTCAATGTGGGATAAAATAACACGACAATCCCGTGATAACTAATCTCAGGATAAGTCATCCCCTGATTTAATACCAACCAAACATGAGATAAACTCATCCTATAATTAATCCCGGGATTAATTATCCCTTATCCCTATTGACAAATGAGCCCTTACAGTTTGAAGTGCTAGAGTTAAGCATCTTCAAATGGACTTTGTAGGATGCCTTCTATAACTACC</genome_strand>
        <mrna_strand>CCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTTCTATAACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331655" ref_strand="+" ref_description="SGN-E331655 [cTOD-7-E12]">
      <seq>aaaaataaaattaaaaaaataaaaaaattaaaaaaaaaataaatacttttatcaaacagctaggcctcccatcttccgcttccactgttttctgcatgctgtaatataccaaggccagcagggaagaaactggcaggcaccggcaccggcaccggcaccggcagggaagtgtttgtgaatcagaaactcagtcgttagattcagagtaataataataataattcttcacttagtattaaacgggaaaggaattgttgttatcgtgttcaattccatcaatagaattacaataatcatggcgtctgcagtggtagctaacgggaagaagaaattagaacaaagagggcctaaaattggggttattagtggtccgactaatccaatggtgacgcctcttttaacagatctttatcaatttactatggcttatgcttattggaaagctggaaaacacaatgaacgagctgtgtttgacttgtacttccgtaagaatccatttggtggtgaatatacaatatttgctgggttagaagaatgcataaagcttattgctcattacaaattaactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="104313" stop="102371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104013" g_stop="103546" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103545" i_stop="102775" i_length="771">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102774" g_stop="102671" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="572" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E331655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104013" e_stop="103546"/>
          <exon e_start="102774" e_stop="102671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGTGTGAGTACCTGCATATTATTGATTTTCTATCAATTTGTCATGCATTTGATGTGTTTGATATAATGTGCAAATACTAAAATTATTCATTTTGGGAGTTGATAGAGTCTAGAATTGCGATTGATCATTTTCTTCATTGTTGATAGATTATGAATTAATATGATCAATTGGTAAGTATCAACTTGTGGAGATCTCTAACTGTTTAATCATCTGATCAAATGCCTTATTGAAAAAAGCAAAATGGTTAAGCGAAGGGACACATTTAGTTATTAAGTTTATATATGTATGCCTTCTGACGGTTATACATGTGTTGGCTGAAAACTATACTTAAACATGGTTAAAAAATATTTTTTTTTATGTATATATAGTAGAGGTTGAACTCCTTTTGGCTTCATCGCTTTTAGTCATTCATATTTTGAACCTGAACCTGTTTAATGAAAAATATTGGCTCCACCATTGCTTGTCGACATGTGAGTATAATTTATGGACCTAATATGTGGAAGTGTTTGGAGAAATGGCAGGTGTTAAGATTTGAGCTCAAGATATCCGATTGCTCTACCATGTTTAGTTGATGAACCAACTCATCGTTATAGTTTTTAGTGGGACATACTTATTTTTATGTTGATCAGTTCAATTTCGAGAGGGACATCATTAATTTGTTTATTTTTAGTTTACAACAGTAATATTCTTTTTCAGTTGTTGAGAAAATGTTTGTTCATCTAAAATCCAAGTGACCCACTAAATGACTTGTCTTTATTTGGTTGAATATTTCAGGTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAG</genome_strand>
        <mrna_strand>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212758" ref_strand="+" ref_description="SGN-E212758 [cLEC-73-H6]">
      <seq>tttctgcatgctgtaatataccaaggccagcagggaagaaactggcaggcaccggcaccggcaccggcaccggcagggaagtgtttgtgaatcagaaactcagtcgttagattcagagtaataataataataattcttcacttagtattaaacgggaaaggaattgttgttatcgtgttcaattccatcaatagaattacaataatcatggcgtctgcagtggtagctaacgggaagaagaaattagaacaaagagggcctaaaattggggttattagtggtccgactaatccaatggtgacgcctcttttaacagatctttatcaatttactatggcttatgcttattggaaagctggaaaacacaatgaacgagctgtgtttgacttgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0037P10-thCHb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0037P10.1" temp_strand="-" temp_description="C09HBa0037P10.1  AC233061.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0037P10 upload_account_name:spain (1 - 109022)">
        <position start="104225" stop="103231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103925" g_stop="103546" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0037P10.1" gen_strand="-" ref_id="SGN-E212758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0037P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103925" e_stop="103546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT</genome_strand>
        <mrna_strand>TTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8069" PGL_stop="7330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8069" e_stop="7330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="8069" e_stop="7330" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8069" stop="7330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCGACCGCTTCTAATGGACACAGGTTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAGTCGATAACCAATAAAGTGGTGGACGATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGCACAAATCGCAACAGTCATTTGACGAAGGAGATATGTGAGCAATTTAAGATTGTTCATCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTTTGAGAAAAATGATCGACAAACAGCGAGGTTGGCATGAAATGTTGCCATATGCTTTGCTAGGTTATCAAACAACGGTCAGAACATCGACTGGGTCTACTCCATACTTGCTAGTATATGGAACAGAAGAAGTCATTCCTGTTGAAGTCGAGATACCGTCGTTGAGGATCATCCAAGAAACTGAATTAAGTAATGCCGAATGGATTAGTAAACGGATTCATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCACCGTTTGCCATGGTCATTTTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  D  R  F  *  W  T  Q  V  H  F  G  C  H  *  L  F  H  Q  V  G  G  S  S  L  L  Q  V  D  N  Q  *  S  G  G  R  F  C  P  Q  Q  S  D  M  Q  I  W  S  S  R  I  H  H  Y  *  *  R  H  K  S  Q  Q  S  F  D  E  G  D  M  *  A  I  *  D  C  S  S  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  Y  Q  K  D  F  E  K  N  D  R  Q  T  A  R  L  A  *  N  V  A  I  C  F  A  R  L  S  N  N  G  Q  N  I  D  W  V  Y  S  I  L  A  S  I  W  N  R  R  S  H  S  C  *  S  R  D  T  V  V  E  D  H  P  R  N  *  I  K  *  C  R  M  D  *  *  T  D  S  S  T  S  F  D  *  *  E  E  N  G  H  R  L  P  W  S  F  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V   </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  T  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  I  T  N  K  V  V  D  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  T  N  R  N  S  H  L  T  K  E  I  C  E  Q  F  K  I  V  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  Q  T  T  V  R  T  S  T  G  S  T  P  Y  L  L  V  Y  G  T  E  E  V  I  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  T  E  L  S  N  A  E  W  I  S  K  R  I  H  Q  L  A  L  I  D  E  K  R  M  V  T  V  C  H  G  H  F  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  R  P  L  L  M  D  T  G  S  F  W  L  P  L  I  I  S  P  S  G  W  K  Q  P  L  T  S  R  *  P  I  K  W  W  T  I  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  L  L  I  T  A  Q  I  A  T  V  I  *  R  R  R  Y  V  S  N  L  R  L  F  I  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  I  S  K  R  F  *  E  K  *  S  T  N  S  E  V  G  M  K  C  C  H  M  L  C  *  V  I  K  Q  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  M  E  Q  K  K  S  F  L  L  K  S  R  Y  R  R  *  G  S  S  K  K  L  N  *  V  M  P  N  G  L  V  N  G  F  I  N  *  L  *  L  M  R  R  E  W  S  P  F  A  M  V  I  L  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8068" stop="7388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPTASNGHRFILVAIDYFTKWVEAASYKSITNKVVDDFVRNNLICRFGVPESIITDNGTNRNSHLTKEICEQFKIVHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYQTTVRTSTGSTPYLLVYGTEEVIPVEVEIPSLRIIQETELSNAEWISKRIHQLALIDEKRMVTVCHGHFIDKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22537" PGL_stop="22784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22537" e_stop="22784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22537" e_stop="22784" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22537" stop="22784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22538" stop="22784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22538" stop="22784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCACTTTGAGAGCAAAGTAAGATATTCTGTAGACTATACAAGAAAAAGTAGTTTGTGAAGAAAAATACAGTGTGAGTGATATTTTAGTAAGATGAAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTTGTGACTACACGATGTAAAATTCCTTACTATAGTAATATCAGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC</gDNA_template>
            <first_frame> E  K  P  L  *  E  Q  S  K  I  F  C  R  L  Y  K  K  K  *  F  V  K  K  N  T  V  *  V  I  F  *  *  D  E  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  R  C  K  I  P  Y  Y  S  N  I  S  C  S  S  W  P  A  V  F  S  L  L  R  R  V  S   </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  V  D  Y  T  R  K  S  S  L  *  R  K  I  Q  C  E  *  Y  F  S  K  M  K  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  L  *  L  H  D  V  K  F  L  T  I  V  I  S  V  A  L  L  G  P  Q  F  F  P  Y  *  E  G  F  P  </second_frame>
            <third_frame>   K  T  T  L  R  A  K  *  D  I  L  *  T  I  Q  E  K  V  V  C  E  E  K  Y  S  V  S  D  I  L  V  R  *  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  C  D  Y  T  M  *  N  S  L  L  *  *  Y  Q  L  L  F  L  A  R  S  F  F  L  I  E  K  G  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0037P10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36272" PGL_stop="36675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36272" e_stop="36675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="36272" e_stop="36675" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36272" stop="36675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAACGAATGATATTTATTTATAATACTGTAAAGCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAATTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGATAAGAAAGAATGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGAGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  T  N  D  I  Y  L  *  Y  C  K  A  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  D  K  K  E  C  L  M  N  *  *  K  E  I  R  G  S  S  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  K  P  T   </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  F  I  Y  N  T  V  K  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  N  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  I  R  K  N  A  *  *  I  D  R  R  R  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  K  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  N  E  *  Y  L  F  I  I  L  *  S  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  I  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  *  *  E  R  M  L  D  E  L  I  E  G  D  *  G  I  E  C  H  K  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0037P10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36767" PGL_stop="37404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36767" e_stop="37404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="36767" e_stop="37404" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36767" stop="37004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36768" stop="37246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37201" stop="37404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTAGCGACACAAGAGAAATAAAGATAATGAATCTTAAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCGAACGAGTATGGTATTGAGGCTTGAGTTCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTATTTTCTTCTTGTTTATTTGTGGACTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCGTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTCAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTGGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  *  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  F  V  D  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  Q  L  L  R  N  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  I   </first_frame>
            <second_frame>  H  V  P  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  S  D  T  R  E  I  K  I  M  N  L  K  R  C  *  Y  T  Q  S  N  E  H  N  S  R  T  S  M  V  L  R  L  E  F  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  Y  F  L  L  V  Y  L  W  T  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  R  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  W  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  Y  *  F  </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  A  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  E  R  V  W  Y  *  G  L  S  S  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  I  F  F  L  F  I  C  G  L  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  V  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  S  A  S  *  K  L  L  D  L  V  I  *  S  G  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  I  D  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37112" stop="37330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLLLFSSCLFVDCSKRAVIFDSTVTLASLHYSGYQGELMLLAWTGSSSSCLDALKFRHGLAFMYFQLLRNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37030" stop="37224"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFIIFFLFICGLQQTCRHLRLNSNSSQSSLLRISG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37555" PGL_stop="37840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37555" e_stop="37840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="37555" e_stop="37840" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37555" stop="37840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCATTGGTCTGATCACACAAGAAGGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTATTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCAAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  *  S  H  K  K  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  I  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  E  Q  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  H  W  S  D  H  T  R  R  S  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  F  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  K  P  L  G  L  * </second_frame>
            <third_frame>   R  F  I  G  L  I  T  Q  E  G  V  *  *  S  L  K  E  R  *  G  D  T  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37604" stop="37840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGHLYFSLRGYKTLGKFHSFFLSFVLLFGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKKRLSKPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40557" PGL_stop="37847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40557" e_stop="37847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="40557" e_stop="37847" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40557" stop="39845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40557" stop="39962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40557" stop="40032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40486" stop="39807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40486" stop="40128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40037" stop="39379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39565" stop="39235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39358" stop="38800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39354" stop="38591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39274" stop="38485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39272" stop="38739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39198" stop="38501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38637" stop="37918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38634" stop="37971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38279" stop="37847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAATAAAGCTCCTTATTTCTGACACGTTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATTCTCCTCATATTCCTCCTTACTATTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCATCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCTAAAAACTTCCATCCTTCTTATTTAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAAATCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTGGTGTCATCCTTGATATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTACCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTTTAAGATAACCAAATCTACAAGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATTAAGACCATTAGCAAAGGAGGAAGATACATAAGAAAATAAGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCACTATCGTTTGTCTTTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTTCCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAATGTTGACCGGTCTGATGTGGACCCCCAACTACAGTCTGTAGTAAAGACTGAATGGGTCGAACTGAGTAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCGTCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGACCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCCCAGATTCAGCACCTTTGAAGAATGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTTTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTAATCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  V  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  I  L  L  I  F  L  L  T  I  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  L  V  H  Q  T  H  E  C  I  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  L  K  T  S  I  L  L  I  *  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  I  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  W  A  S  T  R  F  K  I  N  T  E  V  N  V  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  G  V  I  L  D  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  T  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  L  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  K  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  *  F  T  M  *  I  K  T  I  S  K  G  G  R  Y  I  R  K  *  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  T  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  S  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  M  L  T  G  L  M  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  F  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  V  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  D  P  S  H  R  W  C  L  R  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  P  R  F  S  T  F  E  E  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  H  F  L  S  R  W  R  S  H  R  P  S  I  R  R  A  R  C  S  S  S  S  F  R  G  R  P  P  T  T  S  T  T  A  S  C  R  *  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  I  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  F  S  S  Y  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  S  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  *  K  L  P  S  F  L  F  K  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  K  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  S  R  S  I  Q  K  S  M  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  I  C  A  K  K  A  K  H  P  L  L  T  I  F  L  P  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Y  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  F  K  I  T  K  S  T  R  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  K  E  E  D  T  *  E  N  K  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  F  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  L  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  Y  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  C  G  P  P  T  T  V  C  S  K  D  *  M  G  R  T  E  *  P  L  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  H  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  T  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  P  D  S  A  P  L  K  N  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  E  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  N  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  *  S  S  L  F  L  T  R  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  S  P  H  I  P  P  Y  Y  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  H  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  I  V  G  S  L  C  T  S  K  N  F  H  P  S  Y  L  K  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  N  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  L  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  C  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  W  C  H  P  *  Y  V  P  R  K  L  N  T  L  Y  *  P  F  S  Y  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  Q  E  Y  C  S  P  *  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  V  I  H  N  V  N  *  D  H  *  Q  R  R  K  I  H  K  K  I  R  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  H  Y  R  L  S  F  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  C  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  F  L  *  L  L  G  V  Y  N  S  I  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  N  V  D  R  S  D  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  W  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  T  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  R  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  N  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  L  *  R  M  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  N  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  P  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  T  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40392" stop="40054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQILLIFLLTIRVYQYIINKYDHKEIQIWLKNLVHQTHECIRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39584" stop="39288"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSYTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSTIFKITKSTRVLLPIKVTRQDLYTFSTITDSPTGVETRIGMSSNSQCKLRPLAKEEDT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38124" stop="37852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRGLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPFLTLSYHFLSRWRSHRPSIRRARCSSSSFRGRPPTTSTTASCR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39126" stop="38872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRITASTMTTSSSSYWGSITLFGTIPPNMSSLPTSITLSRVKHRSLREMLTGLMWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39830" stop="39585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGSRSIQKSMSLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLICAKKAKHPLLTIFLPRRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38816" stop="38604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIHSCGLKQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37914" PGL_stop="38467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37914" e_stop="38467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="37914" e_stop="38467" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37914" stop="38467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATTCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCATTCTTCAAAGGTGCTGAATCTGGGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGTCTCATTCT</gDNA_template>
            <first_frame> T  *  P  V  *  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  P  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  F  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  I  L  Q  R  C  *  I  W  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  G  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  S  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  F  F  K  G  A  E  S  G  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  V  S  F  </second_frame>
            <third_frame>   L  A  R  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  P  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  I  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  H  S  S  K  V  L  N  L  G  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  R  R  H  H  L  *  L  G  S  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37915" stop="38382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDSSLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPFFKGAESGDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38541" PGL_stop="39946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38541" e_stop="38715"/>
            <exon e_start="39460" e_stop="39946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="38541" e_stop="38715" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38716" i_stop="39459" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="39460" e_stop="39946" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38541" stop="38715"/>
              <exon start="39460" stop="39946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAA : ATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGGTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATATCAAGGATGACACCACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGATTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTTTAA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  V  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R   : N  G  *  F  *  C  N  S  R  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  W  *  E  N  G  *  *  R  V  F  S  F  L  G  T  Y  Q  G  *  H  H  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  H  *  L  L  Y  *  S  *  T  G  Y  S  P  N  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  F  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  F   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  W  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  :  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  *  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  G  K  K  M  V  S  K  G  C  L  A  F  L  A  H  I  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  D  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  L  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  N  M  P  L  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  K :   W  L  I  L  M  *  F  *  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  R  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  V  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  P  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  T  L  T  S  V  L  I  L  N  R  V  L  A  Q  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  I  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39577" stop="39945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGDYTSNPVRIISFLRGKKMVSKGCLAFLAHIKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRDLKAQLQELLSKGFIRPSASPWGAPVLFL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38542" stop="38715"/>
                    <exon start="39460" stop="39576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSKYATQLCFSPQEWIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53294" PGL_stop="52851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53294" e_stop="52851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="53294" e_stop="52851" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53294" stop="52851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53294" stop="52884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATGGTGTTGGGTTTTATTTGCCCTAAATTTTATACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCTTAAGGGATTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAATTTGATACGTTATCGCTTCTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTAGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGCTTGCTAGCTTCCGCATTTACACC</gDNA_template>
            <first_frame> K  Y  G  V  G  F  Y  L  P  *  I  L  Y  H  K  *  V  F  L  V  G  K  G  F  G  L  T  N  P  F  L  V  G  K  G  L  G  L  Y  K  *  R  H  V  P  S  N  L  I  N  I  H  N  V  V  L  R  D  L  R  V  L  V  R  G  R  I  Y  G  S  Q  I  *  Y  V  I  A  S  V  N  L  P  C  I  P  S  E  L  V  E  V  V  S  L  C  I  L  Y  S  H  I  Y  S  R  L  L  I  S  F  V  D  V  G  R  L  T  E  P  R  *  I  S  V  S  F  G  I  F  L  V  V  F  L  L  V  V  F  R  G  L  L  A  S  F  R  I  Y  T </first_frame>
            <second_frame>  N  M  V  L  G  F  I  C  P  K  F  Y  T  I  N  R  F  S  L  *  E  K  V  L  D  *  L  I  L  F  L  *  E  K  V  *  D  S  I  N  R  G  M  F  L  L  T  *  S  T  F  T  M  *  S  *  G  I  *  E  F  W  L  G  G  E  F  M  G  H  K  F  D  T  L  S  L  L  *  T  S  H  V  F  R  V  N  W  L  R  L  F  P  S  V  F  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  *  V  D  *  P  N  H  V  K  S  L  C  L  L  V  Y  F  S  L  S  S  Y  S  W  S  F  E  V  C  L  L  A  S  A  F  T   </second_frame>
            <third_frame>   I  W  C  W  V  L  F  A  L  N  F  I  P  *  I  G  F  P  C  R  K  R  F  W  I  D  *  S  F  S  C  R  K  R  F  R  T  L  *  I  E  A  C  S  F  *  L  N  Q  H  S  Q  C  S  L  K  G  F  E  S  F  G  *  G  E  N  L  W  V  T  N  L  I  R  Y  R  F  C  E  P  P  M  Y  S  E  *  I  G  *  G  C  F  P  L  Y  F  V  L  S  Y  L  *  *  I  A  H  L  L  C  G  R  R  S  I  D  R  T  T  L  N  L  C  V  F  W  Y  I  S  R  C  L  L  T  R  G  L  S  R  F  A  C  *  L  P  H  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0037P10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="68813" PGL_stop="63438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68813" e_stop="68593"/>
            <exon e_start="64343" e_stop="64235"/>
            <exon e_start="64016" e_stop="63438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68813" e_stop="68593" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.899">
            <gDNA_intron_boundary i_start="68592" i_stop="64344" i_length="4249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64343" e_stop="64235" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64234" i_stop="64017" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="64016" e_stop="63438" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68813" stop="68593"/>
              <exon start="64343" stop="64235"/>
              <exon start="64016" stop="63438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTCTTGGTGTCTCTTGGCTTCAACAACAGCCCTAAAACACCTTAGGGTTCGTGAGTATCGTCCCACTTGTTAATAAAATTTTGAAGGAGAGTTTCAGTTCTTGAAGTATCCTCTGTGTTTTCTCTCTTTCTCTATGCAATAGTCTTTGAATTCCCTAAATCTTGAAAGTTGAAGGCATTATTGTCAGAAAAATCTCCTAATTTTTGAAGCTTGAAG : CCCAAAGAAGGTGAATTTGTTTGCTAAATTAGTTCGCGGTATGTGCGTTGAAGATGCATTGTTACAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTATCTATCAG : GTTATACACTTAGCTTGGGCAAATGCAGTGCATAGCGATGGATTTGATTCAGATCGTCTTCTTGTTCGTAAAATGACAAATAAAAAATTTGCATATTTTCATCTCATTTCTACCCTTTTGGAGTACTTCTTCCTTATCATGTTTTGTGCAGCTGAGGCATTTCTTAGAAAAGGACTTTTTAAGAAAAGGTTGTCCAACCATGCTAAAGGAAAGTATGGACTGATGGTGAGGCCAGAATGTAGAATGATTGTGGTACTTAGGGAGATAACATCGGTGGAGGAGGCGGAGATAGCTAAGTTGAGAGTAAGCAACTTCAAAAAGCTAACCAAACGCAAAAACTGTCTTGTCCCTCATAAGCTCATTAAGACTACTCCAATATGGAACCCAAGGTGAAAGTTAGAAGTAGTGGCACAAGTATTGTTGGTGAATGAGCCCCGATATTATCATAGTTTAATTTTTCGTTAGAAACGTATGCAATCACATAAGATCAGTGGTTGATGAAAATCCACTGCATCTTGCCACATTTCTTTTTTGTAAGAGATGTAACTTGACTTAATACCTGACTTCTGTTTTCTTTTT</gDNA_template>
            <first_frame> F  L  S  W  C  L  L  A  S  T  T  A  L  K  H  L  R  V  R  E  Y  R  P  T  C  *  *  N  F  E  G  E  F  Q  F  L  K  Y  P  L  C  F  L  S  F  S  M  Q  *  S  L  N  S  L  N  L  E  S  *  R  H  Y  C  Q  K  N  L  L  I  F  E  A  *  S :   P  K  K  V  N  L  F  A  K  L  V  R  G  M  C  V  E  D  A  L  L  Q  L  Q  V  T  V  K  R  A  S  K  T  I  Y  Q  :  V  I  H  L  A  W  A  N  A  V  H  S  D  G  F  D  S  D  R  L  L  V  R  K  M  T  N  K  K  F  A  Y  F  H  L  I  S  T  L  L  E  Y  F  F  L  I  M  F  C  A  A  E  A  F  L  R  K  G  L  F  K  K  R  L  S  N  H  A  K  G  K  Y  G  L  M  V  R  P  E  C  R  M  I  V  V  L  R  E  I  T  S  V  E  E  A  E  I  A  K  L  R  V  S  N  F  K  K  L  T  K  R  K  N  C  L  V  P  H  K  L  I  K  T  T  P  I  W  N  P  R  *  K  L  E  V  V  A  Q  V  L  L  V  N  E  P  R  Y  Y  H  S  L  I  F  R  *  K  R  M  Q  S  H  K  I  S  G  *  *  K  S  T  A  S  C  H  I  S  F  L  *  E  M  *  L  D  L  I  P  D  F  C  F  L  F </first_frame>
            <second_frame>  F  S  L  G  V  S  W  L  Q  Q  Q  P  *  N  T  L  G  F  V  S  I  V  P  L  V  N  K  I  L  K  E  S  F  S  S  *  S  I  L  C  V  F  S  L  S  L  C  N  S  L  *  I  P  *  I  L  K  V  E  G  I  I  V  R  K  I  S  *  F  L  K  L  E   : A  Q  R  R  *  I  C  L  L  N  *  F  A  V  C  A  L  K  M  H  C  Y  S  C  K  *  Q  *  S  E  L  P  K  L  S  I  R :   L  Y  T  *  L  G  Q  M  Q  C  I  A  M  D  L  I  Q  I  V  F  L  F  V  K  *  Q  I  K  N  L  H  I  F  I  S  F  L  P  F  W  S  T  S  S  L  S  C  F  V  Q  L  R  H  F  L  E  K  D  F  L  R  K  G  C  P  T  M  L  K  E  S  M  D  *  W  *  G  Q  N  V  E  *  L  W  Y  L  G  R  *  H  R  W  R  R  R  R  *  L  S  *  E  *  A  T  S  K  S  *  P  N  A  K  T  V  L  S  L  I  S  S  L  R  L  L  Q  Y  G  T  Q  G  E  S  *  K  *  W  H  K  Y  C  W  *  M  S  P  D  I  I  I  V  *  F  F  V  R  N  V  C  N  H  I  R  S  V  V  D  E  N  P  L  H  L  A  T  F  L  F  C  K  R  C  N  L  T  *  Y  L  T  S  V  F  F   </second_frame>
            <third_frame>   S  L  L  V  S  L  G  F  N  N  S  P  K  T  P  *  G  S  *  V  S  S  H  L  L  I  K  F  *  R  R  V  S  V  L  E  V  S  S  V  F  S  L  F  L  Y  A  I  V  F  E  F  P  K  S  *  K  L  K  A  L  L  S  E  K  S  P  N  F  *  S  L  K  :  P  K  E  G  E  F  V  C  *  I  S  S  R  Y  V  R  *  R  C  I  V  T  V  A  S  D  S  K  A  S  F  Q  N  Y  L  S   : G  Y  T  L  S  L  G  K  C  S  A  *  R  W  I  *  F  R  S  S  S  C  S  *  N  D  K  *  K  I  C  I  F  S  S  H  F  Y  P  F  G  V  L  L  P  Y  H  V  L  C  S  *  G  I  S  *  K  R  T  F  *  E  K  V  V  Q  P  C  *  R  K  V  W  T  D  G  E  A  R  M  *  N  D  C  G  T  *  G  D  N  I  G  G  G  G  G  D  S  *  V  E  S  K  Q  L  Q  K  A  N  Q  T  Q  K  L  S  C  P  S  *  A  H  *  D  Y  S  N  M  E  P  K  V  K  V  R  S  S  G  T  S  I  V  G  E  *  A  P  I  L  S  *  F  N  F  S  L  E  T  Y  A  I  T  *  D  Q  W  L  M  K  I  H  C  I  L  P  H  F  F  F  V  R  D  V  T  *  L  N  T  *  L  L  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68594" stop="68593"/>
                    <exon start="64343" stop="64235"/>
                    <exon start="64016" stop="63624"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKKVNLFAKLVRGMCVEDALLQLQVTVKRASKTIYQVIHLAWANAVHSDGFDSDRLLVRKMTNKKFAYFHLISTLLEYFFLIMFCAAEAFLRKGLFKKRLSNHAKGKYGLMVRPECRMIVVLREITSVEEAEIAKLRVSNFKKLTKRKNCLVPHKLIKTTPIWNPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="104013" PGL_stop="101756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104013" e_stop="103546"/>
            <exon e_start="102774" e_stop="102627"/>
            <exon e_start="101774" e_stop="101756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.721" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104013" e_stop="103546" e_length="468"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="103545" i_stop="102775" i_length="771"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102774" e_stop="102627" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.721">
            <gDNA_intron_boundary i_start="102626" i_stop="101775" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101774" e_stop="101756" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104013" stop="103546"/>
              <exon start="102774" stop="102671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103925" stop="103546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103905" stop="103546"/>
              <exon start="102774" stop="102627"/>
              <exon start="101774" stop="101756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335482" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAAAATTAAAAAAATAAAAAAATTAAAAAAAAAATAAATACTTTTATCAAACAGCTAGGCCTCCCATCTTCCGCTTCCACTGTTTTCTGCATGCTGTAATATACCAAGGCCAGCAGGGAAGAAACTGGCAGGCACCGGCACCGGCACCGGCACCGGCAGGGAAGTGTTTGTGAATCAGAAACTCAGTCGTTAGATTCAGAGTAATAATAATAATAATTCTTCACTTAGTATTAAACGGGAAAGGAATTGTTGTTATCGTGTTCAATTCCATCAATAGAATTACAATAATCATGGCGTCTGCAGTGGTAGCTAACGGGAAGAAGAAATTAGAACAAAGAGGGCCTAAAATTGGGGTTATTAGTGGTCCGACTAATCCAATGGTGACGCCTCTTTTAACAGATCTTTATCAATTTACTATGGCTTATGCTTATTGGAAAGCTGGAAAACACAATGAACGAGCTGT : GTTTGACTTGTACTTCCGTAAGAATCCATTTGGTGGTGAATATACAATATTTGCTGGGTTAGAAGAATGCATAAAGCTTATTGCTCATTACAAATTAACTGAAGAAGAGATAGCTTTTATCAGAAAATCATTGCCCCCATCGTGTGAG : GATGCCTTCTATAACTACC</gDNA_template>
            <first_frame> K  N  K  I  K  K  I  K  K  L  K  K  K  *  I  L  L  S  N  S  *  A  S  H  L  P  L  P  L  F  S  A  C  C  N  I  P  R  P  A  G  K  K  L  A  G  T  G  T  G  T  G  T  G  R  E  V  F  V  N  Q  K  L  S  R  *  I  Q  S  N  N  N  N  N  S  S  L  S  I  K  R  E  R  N  C  C  Y  R  V  Q  F  H  Q  *  N  Y  N  N  H  G  V  C  S  G  S  *  R  E  E  E  I  R  T  K  R  A  *  N  W  G  Y  *  W  S  D  *  S  N  G  D  A  S  F  N  R  S  L  S  I  Y  Y  G  L  C  L  L  E  S  W  K  T  Q  *  T  S  C  :  V  *  L  V  L  P  *  E  S  I  W  W  *  I  Y  N  I  C  W  V  R  R  M  H  K  A  Y  C  S  L  Q  I  N  *  R  R  D  S  F  Y  Q  K  I  I  A  P  I  V  *   : G  C  L  L  *  L   </first_frame>
            <second_frame>  K  I  K  L  K  K  *  K  N  *  K  K  N  K  Y  F  Y  Q  T  A  R  P  P  I  F  R  F  H  C  F  L  H  A  V  I  Y  Q  G  Q  Q  G  R  N  W  Q  A  P  A  P  A  P  A  P  A  G  K  C  L  *  I  R  N  S  V  V  R  F  R  V  I  I  I  I  I  L  H  L  V  L  N  G  K  G  I  V  V  I  V  F  N  S  I  N  R  I  T  I  I  M  A  S  A  V  V  A  N  G  K  K  K  L  E  Q  R  G  P  K  I  G  V  I  S  G  P  T  N  P  M  V  T  P  L  L  T  D  L  Y  Q  F  T  M  A  Y  A  Y  W  K  A  G  K  H  N  E  R  A  V :   F  D  L  Y  F  R  K  N  P  F  G  G  E  Y  T  I  F  A  G  L  E  E  C  I  K  L  I  A  H  Y  K  L  T  E  E  E  I  A  F  I  R  K  S  L  P  P  S  C  E  :  D  A  F  Y  N  Y  </second_frame>
            <third_frame>   K  *  N  *  K  N  K  K  I  K  K  K  I  N  T  F  I  K  Q  L  G  L  P  S  S  A  S  T  V  F  C  M  L  *  Y  T  K  A  S  R  E  E  T  G  R  H  R  H  R  H  R  H  R  Q  G  S  V  C  E  S  E  T  Q  S  L  D  S  E  *  *  *  *  *  F  F  T  *  Y  *  T  G  K  E  L  L  L  S  C  S  I  P  S  I  E  L  Q  *  S  W  R  L  Q  W  *  L  T  G  R  R  N  *  N  K  E  G  L  K  L  G  L  L  V  V  R  L  I  Q  W  *  R  L  F  *  Q  I  F  I  N  L  L  W  L  M  L  I  G  K  L  E  N  T  M  N  E  L   : C  L  T  C  T  S  V  R  I  H  L  V  V  N  I  Q  Y  L  L  G  *  K  N  A  *  S  L  L  L  I  T  N  *  L  K  K  R  *  L  L  S  E  N  H  C  P  H  R  V  R :   M  P  S  I  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0037P10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103835" stop="103546"/>
                    <exon start="102774" stop="102627"/>
                    <exon start="101774" stop="101757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRNSVVRFRVIIIIILHLVLNGKGIVVIVFNSINRITIIMASAVVANGKKKLEQRGPKIGVISGPTNPMVTPLLTDLYQFTMAYAYWKAGKHNERAVFDLYFRKNPFGGEYTIFAGLEECIKLIAHYKLTEEEIAFIRKSLPPSCEDAFYNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 204 chains have been computed
$ 
$ memory statistics:
$ 72880 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2143 bytes was the average size of a spliced alignment
$ 17576 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1597 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 242 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:34:33
-->
