<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:37:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2156" ref_strand="+" ref_description="SGN-M2156 T1641 [cos_markers]">
      <seq>tactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27831" stop="32672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28131" g_stop="28166" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="324" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="473" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32372" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="601" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-M2156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28131" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATG</genome_strand>
        <mrna_strand>TACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7427-2" ref_strand="+" ref_description="SGN-M7427-2 C2_At2g37110-2 [cosii_markers]">
      <seq>aatttcttcaccaatctttcaaatctctcaaaaaaaatcttgatttcatcaaaaccccaatggcaaatactgatgaatcgaacccccttttacccaatcaacaatctgaaatgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagctccaccgtttccggctgatccggtgaagcctttatcggccgctgtaccgatgggatggacagctgaaggggttcccatgggtcatggagttgtgggtgacccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttatactggcctctacctaattggacaatccttctttggctcgaactgtgtggcgccttgctttacatatcccagtcgtacagctatccgccgaaagttcaatctcgaggggagctgtgaggcgttcaacagatctagtgggtgctgcgggagctttgttgaggacgaggtgcagcgtgagcaatgtgagtctatttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaacgcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatcttgatgaggagtccaagccatttccttcttgtgtttgatttgtatccattttcttaaagcttctgaacgctcgactttttaatagttttaccagttatgtaaaacgtgaagacctatatgtgttatgtttataatgtatatgtgcataaaagagatggattctgctgggggtatttgtgttactctggtattatgtttttgaaaaaactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83489" stop="79764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83189" g_stop="82841" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="551" r_length="203" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80063" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="963" r_length="412" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-M7427-2" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7427-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83189" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTG-GTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTA</genome_strand>
        <mrna_strand>AATTTCTTCACCAATCTTTC-AAATCTCTCAAAAAAAATCTTGATTTCATCAAAACCCCAATGGCAAATACTGATGAATCGAACCCCCTTTTACCCAATCAACAATCTGAAATGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGCTCCACCGTTTCCGGCTGATCCGGTGAAGCCTTTATCGGCCGCTGTACCGATGGGATGGACAGCTGAAGGGGTTCCCATGGGTCATGGAGTTGTGGGTGACCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTATACTGGCCTCTACCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCGCCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGAAAGTTCAATCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGATCTAGTGGGTGCTGCGGGAGCTTTGTTGAGGACGAGGTGCAGCGTGAGCAATGTGAGTCTATTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAACGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATCTTGATGAGGAGTCCAAGCCATTTCCTTCTTGTGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAACGCTCGAC----TTTTTAATAGTTTTACCAGTTATGTAAAACGTGAAGACCTATATGTGTTATGTTTATAATGTATATGTGCATAAAAGAGATGGATTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7427" ref_strand="+" ref_description="SGN-M7427 C2_At2g37110 [cosii_markers]">
      <seq>aaaggaccaattccacacgtatttacacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggccttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83535" stop="80093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83235" g_stop="82841" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="598" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80393" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="683" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-M7427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83235" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAG</genome_strand>
        <mrna_strand>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7675-2" ref_strand="+" ref_description="SGN-M7675-2 C2_At3g09720-2 [cosii_markers]">
      <seq>cgaggcttgtttctcagctgccaaaattaacttgtagcgttgcctcaaatttcagctccaatttctctgcaatcgaaaaccccatctcagagttatggaaaaagatgcatctttcttgtttggtggcatctctttcaaccgcaaaaagtttgctcgcgatttcgacagatttaagggggaaaaacatagttgattcagctgagaaattgcaattgattgagaagggaggataaaactattgatgattcgttagagaaagtggagttcgtcgagaatgagatatctgaaatggaggatgggacaagtactagcgtgagtaagaagaggaagaggaaggagaagggagcagttcatgactcagtggagggattttccgtcttcaagagttcaaaattgaaaaaggaagctgcaagcgaagagactgatcaatctgtaaatgaactgattcagggaaaaaaagaatattatcaacaattggagagggacgcaatttttcggaagatgcacaacattcatgtttcagggagtaacatcccttcgccattgcacaattttgctgaattaagatcaagatataaatgtcgatcatatctattacgaaatctggcaaaactgggatttaaagaaccaacgccaatccaaaggcagactattccagtcctcttatctgggcgggaatgctttgcttgtgcacctactggttttggcaaaacatttgcttttgtttttcctatacttatgaaactcaagcacacttcaaaggatggtgtccgagctgtaattctttcccctacaagagagttagctgctcagacaacaagagaatgcaaaaagttggccaggaagaagttctacatcaggttgatgactaaacaactcgctaaaagtggggacttttctaaactgcgatgtgatgtactgatctcgacaccattgcgcttaaagttcgtatccaaaaaagaaagcttgatttaagtagggttgaatttcttgtcttagatgaatctgataagcttttcgagcctggcatgctagagcaggttgattttgtggtgaaggcgtgcacaaatccttcaattcttcggtcattgttcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgttcgagtaattattggtaggaaaaattcggcttctgaaacaatagagcaaaaattggtatatgtagggagtgaagaagggaagcttctggctcttcgtcaaagctttgcagagagtttgaacccaccagtgctagtattcgttcaaaacaaggagcgtgcaaaggagctatatgacgagctaaaattggaagatattcgacccgatgttatccattcagacctttctcagatacagagagaaaatgctattgataattttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggttaactgcgtgataaattacgatttcccagacgctgctgcagcatatattcacagaattggacgttctggcagagcaggaaggagtggacaggcgataacattttatactgaagcagatattccctttttgaggaacatcgcaaatgttattacgtcttctggtggtgaggttccagagtggatcatgtctctgaccaagaaaaagtggaggaaacacagaccacaaagagaaacatttcaactcagccagacatatgaagcatccctcacagttttgagcattatatcaagtttataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121827" stop="128053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122122" g_stop="122296" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122297" i_stop="122469" i_length="173">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122470" g_stop="122517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="224" r_length="49" r_score="0.792"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122518" i_stop="122692" i_length="175">
            <donor d_prob="0.995" d_score="0.79"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122693" g_stop="122822" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="355" r_length="131" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122823" i_stop="122935" i_length="113">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.908" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122936" g_stop="123057" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="480" r_length="125" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123058" i_stop="123170" i_length="113">
            <donor d_prob="0.722" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123171" g_stop="123262" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="572" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123263" i_stop="124106" i_length="844">
            <donor d_prob="0.735" d_score="0.94"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124107" g_stop="124203" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="669" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124298" g_stop="124378" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="750" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124466" g_stop="124695" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="979" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717">
            <donor d_prob="0.904" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="125413" g_stop="125607" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1174" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="125792" g_stop="125882" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1175" r_stop="1265" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1266" r_stop="1388" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="127232" g_stop="127382" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1389" r_stop="1539" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="127510" g_stop="127741" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1540" r_stop="1770" r_length="231" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-M7675-2" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>1767</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7675-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122122" e_stop="122296"/>
          <exon e_start="122470" e_stop="122517"/>
          <exon e_start="122693" e_stop="122822"/>
          <exon e_start="122936" e_stop="123057"/>
          <exon e_start="123171" e_stop="123262"/>
          <exon e_start="124107" e_stop="124203"/>
          <exon e_start="124298" e_stop="124378"/>
          <exon e_start="124466" e_stop="124695"/>
          <exon e_start="125413" e_stop="125607"/>
          <exon e_start="125792" e_stop="125882"/>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127382"/>
          <exon e_start="127510" e_stop="127741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTTGTCTCTCAGCTGCCAAAAATAACTTGTAGCGTTGCTCCAATTTTCAGCTCCAATTTGCTCTGCAATCGAAAA-CCCATCTCAGAGTTATGGAAAAAGATGCATCTTTTTTGTTTGGTGGCATCTCTTTCAATCGAAAAAAGTTTGCTCGCGATTTCGACAGATTTAAGGTAAATTTTTTTTATTTTTTTTGCTTTAAACCTTTGATAGTTTCAGAGTAAAAGAGTGAACTTTATTGAGAAATATCAGTTTGGGAATTGTGGGATTGAGTTTGTTTTTTTTTGTTTGAATTTACATTGCATTGATACTTGATTTTTTATGTGTGTGTAAATTTGATGTGTAGGGGAAAATTCA-AGTTGATTCAGCTGAGAAACTGAACTTTATTGACAAGGTATTACTGATGAACTTTGTTAAGTTTGATTCCCTAAAACAGTATTAGGACTCCGAATCAGTGTGTGTATAGCATTTTGTGTATTCGTTGTTTTGATGTAAGATGTTTCTAGTTGACAAAAAGTTCAATGATTGATTGTGTGTATGTCATTGATTTGGTTTTATATTTCACATAG-GAGGATAAAACTATTGATGATTCGTTAGAGAAAGTGGAGTTTGTCGAGAATGAGATATCTGGAATGGAGGATGGGACAAGTACTAGCGTGAGTAAGAAGAGGAAGAGGAAGGAGAAGGGAAAAGTTCCTGGTAAAATTCCTTTGTCTGTCTATTTGAGCTTCTTGTTTATTTCTTTGTTGTATAAAATGGTACTGAAGTTTACTGTTTTGGCCCTTTGTTCTAATTCATGGCATTGGTTTTAGA-T--GTGGAGGGATTTTCTGTCTTCAAGAGTTCAAAATTGAAAGAGGAAGCTGCAAGCGAAGAGACTGATCAATCTGTAAATGAACTGCTTCAGGGAAAGAAAGAATATTATCAACAATTGGAGGTTTGTCTCATTTGCTAGCAGTTGGATATAAGCCTTTTTGCTGCGTTCATGAATTTTTGATAAACTTTTATTGAAGAGATATTTCTTCTGTTCCTTTGATTTTCTGGATTTAGAGGGACGCAATTTTTCGGAAGATGCACAACATTCATGTTTCAGGGAGTAACATCCCTTCGCCATTGCTCAATTTTTCTGAACTAAGATCAAGGTACTCTGTCGTGCATTGTGTTGATTTTTGATCTGGAGACACGTGATTCCCTAGATCCCTTTCTCTGATGGTCACATGCTTCACCAAGGCCTAGTACTTTAGATGTTTACATATTTACAGTAGGCTATCCATTGTATGGAACAGTTCGATCATGTCAAGGAAGTAATATTTAGTGAAAAACCCAATAAAGCCTTAATCCATTCATTTTGTTGACCGCTTTCAATATCTCCTTGAATCTACTTTATGTGAGCTACACATTTTTTTGTAATGTGTCAAGCAAGAATAGGTAGCGATAGGGTGTTGAGGAATATTTTAAGCTGTTTTGAATTGATCTAACATGCAAATAAGTAGGCTAATGAAAATTTTTGCTGTTTCTCCTGCATTTATGGTTATCTTTTTTCTTATGTATTACAATTTTTTATGTCTTATACTCTTTTTCTGGGGAATCGTGGGGGAAGGGGTATCAGTTATGAGGCTTAGCTTAAGAAGCATATAAGGACTTGTAGAAATATATCATAAATGCAGAAATGATTTTGTTCTCAATTGCTATTCTTTTTCGTCATGTCATTTTTACTTGTGTACTGTGCCTCTTTTGGGGATAGACTGTTGGTGGTAAATGAGGTAGGATTCTGCAACTATGCATTGAAGTCCTTTTCCTCTAACACTCCTTTCCACATATTTCTGTTTACGTAATATTCCCTTTCTTAGGACATAAATGGGGGATGTACTAAGTTGTTGTTAAAAGCAAGTTGTTTTGTCTGTATTAATCAGTTAATTATTGTTATCTGCGCTTGACATTCCCTCTGTCCTCTGTTTCACCGTCTGTTTGTATATGGTGCTACAGATATGAATGTCGATCATATCTATTGCGAAATCTGGCAAAACTAGGATTTAAAGAACCAACGCCAATCCAAAGGCAGACTATTCCAGTCCTCTTATCTGTATGATCTTCCTGAATTCCGCCACTGTTTTATATACACATGTATCTTTCTTGTTTTCCTTTGAGAATCTTTAATCATGTTTGACTTTCACCAGGGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAGGTACATATATATTGGCATTGTTATGTTGCTCATCATCATTTTTATTATAAGTTAGAAGACATCTGACAGCCATCTTTTTTTTATCAGCACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAGGTACGTTCCTCATTTTCTAGGGTTCAAACTCTTATGTGCTAGTGTGGGTATTTCAGCTTTCAACCTTATTGATATTAAATCAGTGTGGTAAGTACGAGTTTCTGAGGTGATGACATTGAAGATCCCAAGCCGACTGCATAATTTGTACTGTAATTCATAACAAAAAGCAACTGGTGAAGTTAGGGTCTAGTTTAGAGATACAAGGCTTTTTGCTGTACTGCTTGATTTGCACAATCACAATTAGATTAAATTATTTTTTCAGGCTGAGTTTGTCTCATTTTTATCTCATTTTTACTTTTATCATTGTTTATTATTGTTTGTTAACAATAAGCTACCCTAGTATGTTGTTTATGGCATTTCGATTATCACATGATATTATTGCTGTTTTGGCAACTTTTGCGCTGTTTCTTGTTTCAATTTCTCTTCATTGTCTTCTTCTTTATACCGGGATTTGTTGCACTTGAGCTGAGGGTCTTTTGAAAACAGCTGCTCTACCTCCATGAGGTAATCTAAGGTTTGCATACATTCTACCCTCCTCAGACCTCATTTATGGGATAGGTATGTTGTTGTTGCTGAGTTTGATGTAGAGGAGCATAAGCATTGGCTTTATTCCTGTAAACCTAAATGTTACTATTTGGAATTGGTGCTGTGGTGCAAAGTATTTCCTTCTTTTAATCAGCATTAGCATGCCTTTTCACCAACTCCTTATGGGTGCAGGGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAAGTAAGTACTAATAGGCCTTCGGTAGATGTATCTTAACTCTGCAGTGAAGTGAATGGTTATTTGGCTTCATACTCTCTTTTTTATGTTGTTTTGTTGGTGAAGGAGGAGAAGATCTTCCTTCCTCTCCTTTTTCTGACTCTCCATCTTGGTGAATGCTTACTTGGCTGCTTTTGCATTTCTGCAGAAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAGGTATGATCCTCATGTTCCTTAGTCATCAGAACTGATTGTATACCTCTTTGATGTGATTGGAGCCGCCTCTGGCATAATAATTGCTTGCACAACACCTTTACTTATCCCCCAAAAATCCTAGAACAACAATATCTACACAAGGGATTTCACATGGATACTCGTTACTACACAGTTGCTGTGAAACTGTCACTCTTGAAGCACTCTTGTCATATTTAGACGATGCCTTTTTGTAATTTCCGGCATTTTCTTTCTTTCCAGTCACTCAAATGTCCATCTTTGCTGTCAAATTGTTCACTGTTTTCTTTTTCTGCTCACGTGGTCTTTATATTCCCAGAAAATGGGCTCTAGTTGAATCCCCTTGAGCCATTGTTTTGCTGAGAGGGATTTCAACATCTAAGCCGTGCTTCTTGCTTTTTGTTCACTCTATATGAAACTCCTGTTCTCTTTGCTACTCTTACCATTCTGTAAGTTCATACTGTTACTTGAGCGGATCATCTTCTTCTTTTGATAGGCAAAGGGGTGTTACTACCTTCAAAAGCAACTAATCCCCGTTAAAAAATTATTTGCATGCTACAAAGTTTTTCCAGTTGTCTATACAATATGGTTTGCTATGTGTGCTCCAAAAACATAAAAAGAAAGCTTAATAACATAGACGACCCCTTAAACTTGCCAATAAATTTTGAGGGGCTGTCATTAAGCCTTAAAGAAAAGAGGTTTTTTTAGATTTATGTACAAACCGTCAATCTCAGCCCTCAAGGGGAAATTCCAATGGAATATTTCTATTTTACTTCCAAAGTAACATTCTTTTCATCAACACTGCCGGCACTTTCACCAACGCTCAATTGCATTTTCATGGCTCAGTGTGGTGTTTTTATTTGATACCATAGTGATTGTTCCGGAAATTTTACAATCGGTGCTAATTTAGTTAGATCTTCTTGCTATTTTCTTAAGCTGATCTATGATCAACATCTACAATGATTTGTTAACTTCGTAATGTATACCTAATTCATCTTTTTTTTGCATTGCCTGTCTGATTTATTATATGTAGAGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTGGTAAATATCCAACCCAAATTCGACTTTTACAATCTTATAGATAGTGATTCATAAGTCAATAGTCTTACAGTAAATCACAACAGTTTCAACTGTTCACTGAAAACTTACCGGTGATTCTTGTAAATAGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAA</genome_strand>
        <mrna_strand>CGAGGCTTGTTTCTCAGCTGCCAAAATTAACTTGTAGCGTTGCCTCAAATTTCAGCTCCAATTT-CTCTGCAATCGAAAACCCCATCTCAGAGTTATGGAAAAAGATGCATCTTTCTTGTTTGGTGGCATCTCTTTCAACCGCAAAAAGTTTGCTCGCGATTTCGACAGATTTAAG.............................................................................................................................................................................GGGGAAAAACATAGTTGATTCAGCTGAGAAATTGCAATTGATTGAGAAG...............................................................................................................................................................................GGAGGATAAAACTATTGATGATTCGTTAGAGAAAGTGGAGTTCGTCGAGAATGAGATATCTGAAATGGAGGATGGGACAAGTACTAGCGTGAGTAAGAAGAGGAAGAGGAAGGAGAAGGGAGCAGTTCATG.................................................................................................................ACTCAGTGGAGGGATTTTCCGTCTTCAAGAGTTCAAAATTGAAAAAGGAAGCTGCAAGCGAAGAGACTGATCAATCTGTAAATGAACTGATTCAGGGAAAAAAAGAATATTATCAACAATTGGAG.................................................................................................................AGGGACGCAATTTTTCGGAAGATGCACAACATTCATGTTTCAGGGAGTAACATCCCTTCGCCATTGCACAATTTTGCTGAATTAAGATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGTCGATCATATCTATTACGAAATCTGGCAAAACTGGGATTTAAAGAACCAACGCCAATCCAAAGGCAGACTATTCCAGTCCTCTTATCT..............................................................................................GGGCGGGAATGCTTTGCTTGTGCACCTACTGGTTTTGGCAAAACATTTGCTTTTGTTTTTCCTATACTTATGAAACTCAAG.......................................................................................CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAGAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCTTAAAGTTCG-TATCCAAAAAAGAAAGCTTGATTTAAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAATTTCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA........................................................................................................................................................................................AAATTCGGCTTCTGAAACAATAGAGCAAAAATTGGTATATGTAGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCAAAGGAGCTATATGACGAGCTAAAATTGGAAGATATTCGACCCGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATTGATAATTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTTAACTGCGTGATAAATTACGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG...............................................................................................................................GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCAGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGACCACAAAGAGAAA-CATTTCAACTCAGCCAGACATATGAAGCATCCCTCACAGTTTTGAGCATTATATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7675" ref_strand="+" ref_description="SGN-M7675 C2_At3g09720 [cosii_markers]">
      <seq>caaaggcagactattccagtcctcttatctgggcgtgaatgctttgcttgtgcacctactggttctggcaaaacatttgcttttgtttttcctgtacttatgaaactcaagcacacttcaaaggatggtgtccgagctgtaattctttcccctacaaaagagttagctgctcagacaacaagagaatgcaaaaagttggccaggaagaagttctacatcaggttgatgactaaacaactcgctaaaagtggggacttttctaaactgcgatgtgatgtactgatctcgacaccattgcgcctaaagtttgctatccaaaaaagaaagcttgatttaagtagggttgaatatcttgtcttagatgaatctgataagcttttcgagcctggcatgctagagcaggttgattttgtggtgaaggcgtgcacaaatccttcaattcttcggtcattgttcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgttcgagtaattattggtaggaaaaattcagcttctgaaacaatagagcaaaaactggtatatgttgggagtgaagaagggaagcttctggctcttcgtcaaagctttgcagagagtttaaacccaccagtgctagtattcgttcaaaacaaggagcgtgccaaggagctatatgacgagttaaaattggaagatattcgagcagatgttatccattcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggtcaactgcgtgataaattatgatttcccagacgctgctgcagcatatattcacagaattggacgttctggcagagcaggaaggagtggacaggcgataacattttatactgaagcagatattccctttttgaggaacatcgcaaatgttattacgtcttctggtggtgaggttccggagtggatcatgtctctgaccaagaaaaagtggaggaaacacaggccgcgaagagaaaccatttcaactcagccagacatatgaaccatccctcatagttttgagcacaatatcaagttttttgaacttttctttttatacaacattaatgtatgattcaacttgtaatttatgttaagtatgagtttggaatgttcacttaaatgatagagaaatgaaatgttgtctttttttttgaaaagaaactctttttagtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="123874" stop="128182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124174" g_stop="124203" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124298" g_stop="124378" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="111" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124466" g_stop="124695" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="341" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125413" g_stop="125607" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125792" g_stop="125882" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="627" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="750" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="127232" g_stop="127382" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="901" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="127510" g_stop="127879" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1271" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1275" polyA_stop="1289"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-M7675" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1271</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124174" e_stop="124203"/>
          <exon e_start="124298" e_stop="124378"/>
          <exon e_start="124466" e_stop="124695"/>
          <exon e_start="125413" e_stop="125607"/>
          <exon e_start="125792" e_stop="125882"/>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127382"/>
          <exon e_start="127510" e_stop="127879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCAGACTATTCCAGTCCTCTTATCTGTATGATCTTCCTGAATTCCGCCACTGTTTTATATACACATGTATCTTTCTTGTTTTCCTTTGAGAATCTTTAATCATGTTTGACTTTCACCAGGGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAGGTACATATATATTGGCATTGTTATGTTGCTCATCATCATTTTTATTATAAGTTAGAAGACATCTGACAGCCATCTTTTTTTTATCAGCACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAGGTACGTTCCTCATTTTCTAGGGTTCAAACTCTTATGTGCTAGTGTGGGTATTTCAGCTTTCAACCTTATTGATATTAAATCAGTGTGGTAAGTACGAGTTTCTGAGGTGATGACATTGAAGATCCCAAGCCGACTGCATAATTTGTACTGTAATTCATAACAAAAAGCAACTGGTGAAGTTAGGGTCTAGTTTAGAGATACAAGGCTTTTTGCTGTACTGCTTGATTTGCACAATCACAATTAGATTAAATTATTTTTTCAGGCTGAGTTTGTCTCATTTTTATCTCATTTTTACTTTTATCATTGTTTATTATTGTTTGTTAACAATAAGCTACCCTAGTATGTTGTTTATGGCATTTCGATTATCACATGATATTATTGCTGTTTTGGCAACTTTTGCGCTGTTTCTTGTTTCAATTTCTCTTCATTGTCTTCTTCTTTATACCGGGATTTGTTGCACTTGAGCTGAGGGTCTTTTGAAAACAGCTGCTCTACCTCCATGAGGTAATCTAAGGTTTGCATACATTCTACCCTCCTCAGACCTCATTTATGGGATAGGTATGTTGTTGTTGCTGAGTTTGATGTAGAGGAGCATAAGCATTGGCTTTATTCCTGTAAACCTAAATGTTACTATTTGGAATTGGTGCTGTGGTGCAAAGTATTTCCTTCTTTTAATCAGCATTAGCATGCCTTTTCACCAACTCCTTATGGGTGCAGGGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAAGTAAGTACTAATAGGCCTTCGGTAGATGTATCTTAACTCTGCAGTGAAGTGAATGGTTATTTGGCTTCATACTCTCTTTTTTATGTTGTTTTGTTGGTGAAGGAGGAGAAGATCTTCCTTCCTCTCCTTTTTCTGACTCTCCATCTTGGTGAATGCTTACTTGGCTGCTTTTGCATTTCTGCAGAAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAGGTATGATCCTCATGTTCCTTAGTCATCAGAACTGATTGTATACCTCTTTGATGTGATTGGAGCCGCCTCTGGCATAATAATTGCTTGCACAACACCTTTACTTATCCCCCAAAAATCCTAGAACAACAATATCTACACAAGGGATTTCACATGGATACTCGTTACTACACAGTTGCTGTGAAACTGTCACTCTTGAAGCACTCTTGTCATATTTAGACGATGCCTTTTTGTAATTTCCGGCATTTTCTTTCTTTCCAGTCACTCAAATGTCCATCTTTGCTGTCAAATTGTTCACTGTTTTCTTTTTCTGCTCACGTGGTCTTTATATTCCCAGAAAATGGGCTCTAGTTGAATCCCCTTGAGCCATTGTTTTGCTGAGAGGGATTTCAACATCTAAGCCGTGCTTCTTGCTTTTTGTTCACTCTATATGAAACTCCTGTTCTCTTTGCTACTCTTACCATTCTGTAAGTTCATACTGTTACTTGAGCGGATCATCTTCTTCTTTTGATAGGCAAAGGGGTGTTACTACCTTCAAAAGCAACTAATCCCCGTTAAAAAATTATTTGCATGCTACAAAGTTTTTCCAGTTGTCTATACAATATGGTTTGCTATGTGTGCTCCAAAAACATAAAAAGAAAGCTTAATAACATAGACGACCCCTTAAACTTGCCAATAAATTTTGAGGGGCTGTCATTAAGCCTTAAAGAAAAGAGGTTTTTTTAGATTTATGTACAAACCGTCAATCTCAGCCCTCAAGGGGAAATTCCAATGGAATATTTCTATTTTACTTCCAAAGTAACATTCTTTTCATCAACACTGCCGGCACTTTCACCAACGCTCAATTGCATTTTCATGGCTCAGTGTGGTGTTTTTATTTGATACCATAGTGATTGTTCCGGAAATTTTACAATCGGTGCTAATTTAGTTAGATCTTCTTGCTATTTTCTTAAGCTGATCTATGATCAACATCTACAATGATTTGTTAACTTCGTAATGTATACCTAATTCATCTTTTTTTTGCATTGCCTGTCTGATTTATTATATGTAGAGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTGGTAAATATCCAACCCAAATTCGACTTTTACAATCTTATAGATAGTGATTCATAAGTCAATAGTCTTACAGTAAATCACAACAGTTTCAACTGTTCACTGAAAACTTACCGGTGATTCTTGTAAATAGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATG-AATGTTGTCTTTTTTTTTTGAAAAGAAACTCTTTTTA</genome_strand>
        <mrna_strand>CAAAGGCAGACTATTCCAGTCCTCTTATCT..............................................................................................GGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAG.......................................................................................CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA........................................................................................................................................................................................AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG...............................................................................................................................GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATGAAATGTTGTC-TTTTTTTTTGAAAAGAAACTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28131" PGL_stop="32372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28131" e_stop="28166"/>
            <exon e_start="30651" e_stop="30938"/>
            <exon e_start="31619" e_stop="31767"/>
            <exon e_start="32245" e_stop="32372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28131" e_stop="28166" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30651" e_stop="30938" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.810">
            <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31619" e_stop="31767" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32245" e_stop="32372" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28131" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTTTCTCATACAACATCTTTTTTCATTCATGAAG : TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG : TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG : TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATG</gDNA_template>
            <first_frame> Y  F  L  I  Q  H  L  F  S  F  M  K  :  F  H  *  V  G  L  Q  L  E  T  *  K  S  N  K  V  A  G  F  G  C  *  L  I  S  A  P  N  F  Q  I  Q  Y  S  F  F  H  F  K  V  Q  T  S  A  Q  F  Q  N  H  L  L  L  Y  K  L  S  F  W  D  I  S  S  N  I  G  Q  S  T  T  L  H  Y  T  S  K  T  W  P  I  V  Q  D  F  S  Y  C  Y  Y  L  Y  F  F  T  F  I  M  :  *  K  V  S  S  N  *  I  T  T  Q  R  V  A  Q  E  L  K  I  S  S  K  N  K  W  Q  H  C  T  T  N  M  G  T  Q  Q  F  L  G  L  E  I  F  F  M  I  A  W  L  S :   H  V  M  H  H  Y  I  W  T  Q  Q  M  G  *  N  Q  K  K  N  L  Q  G  I  L  G  *  G  I  L  S  I  L  R  Q  L  N  K  H  L  K  K  N  </first_frame>
            <second_frame>  T  F  S  Y  N  I  F  F  H  S  *  S :   F  I  E  W  D  Y  N  *  R  P  K  S  P  T  K  W  L  V  L  V  A  N  *  L  V  H  Q  I  F  K  S  N  I  P  F  S  T  S  K  F  K  L  V  H  N  S  K  T  I  C  Y  Y  I  N  *  A  F  G  T  F  H  Q  I  L  A  K  V  Q  H  F  I  T  H  Q  R  H  G  Q  L  F  K  I  S  L  I  V  I  T  S  T  S  S  H  S  *  C :   K  K  *  A  P  I  K  L  L  H  K  E  L  P  K  S  *  R  Y  H  Q  R  T  S  G  N  I  V  P  Q  T  W  E  H  S  S  F  L  D  *  K  S  F  S  *  L  H  G  *   : V  M  *  C  I  T  I  F  G  H  S  K  W  A  R  I  R  K  R  I  S  K  E  F  W  D  E  E  F  *  V  Y  *  D  N  *  T  S  T  *  K  R  M </second_frame>
            <third_frame>   L  S  H  T  T  S  F  F  I  H  E   : V  S  L  S  G  T  T  T  R  D  L  K  V  Q  Q  S  G  W  F  W  L  L  I  N  *  C  T  K  F  S  N  P  I  F  L  F  P  L  Q  S  S  N  *  C  T  I  P  K  P  F  A  T  I  *  I  E  L  L  G  H  F  I  K  Y  W  P  K  Y  N  T  S  L  H  I  K  D  M  A  N  C  S  R  F  L  L  L  L  L  P  L  L  L  H  I  H  N   : V  K  S  E  L  Q  L  N  Y  Y  T  K  S  C  P  R  A  E  D  I  I  K  E  Q  V  A  T  L  Y  H  K  H  G  N  T  A  V  S  W  I  R  N  L  F  H  D  C  M  V  K  :  S  C  D  A  S  L  Y  L  D  T  A  N  G  L  E  S  E  K  E  S  P  R  N  F  G  M  R  N  F  K  Y  I  E  T  I  K  Q  A  L  E  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30812" stop="30938"/>
                    <exon start="31619" stop="31767"/>
                    <exon start="32245" stop="32370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELLGHFIKYWPKYNTSLHIKDMANCSRFLLLLLPLLLHIHNVKSELQLNYYTKSCPRAEDIIKEQVATLYHKHGNTAVSWIRNLFHDCMVKSCDASLYLDTANGLESEKESPRNFGMRNFKYIETIKQALEKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="83235" PGL_stop="80063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83235" e_stop="82841"/>
            <exon e_start="81592" e_stop="81390"/>
            <exon e_start="80477" e_stop="80063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.558" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83235" e_stop="82841" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.558" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81592" e_stop="81390" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912"/>
          </intron>
          <exon e_serial="3" e_score="0.940">
            <gDNA_exon_boundary e_start="80477" e_stop="80063" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83235" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83189" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7427-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT : GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG : GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTA</gDNA_template>
            <first_frame> K  G  P  I  P  H  V  F  T  Q  H  Y  T  *  H  K  F  L  H  Q  S  F  K  I  P  Q  K  S  S  *  F  H  Q  N  P  N  G  K  Y  R  *  I  E  P  T  F  T  Q  S  T  I  *  G  E  R  *  E  E  S  Q  *  T  H  F  F  N  N  P  S  S  T  V  S  G  G  S  G  E  A  F  I  S  R  C  S  D  G  M  D  S  *  R  G  P  H  G  S  W  S  C  R  *  S  D  Y  E  *  G  S  V  G  F  W  T  L  C  L  F  W  K  D  *  *  V  L  Q  Q  *  Y  *  S  L :   F  T  R  *  H  G  P  M  R  A  L  R  E  Q  C  *  E  T  W  F  C  S  R  D  F  C  Q  S  L  L  A  L  H  W  P  L  P  N  W  T  I  L  L  W  L  E  L  C  G  T  L  L  Y  I  S  Q  S  Y  S  Y  P  P  E  V  Q  S  *   : G  E  L  *  G  L  Q  Q  V  *  W  V  L  R  E  L  Y  *  G  R  G  A  T  R  A  M  *  V  S  L  *  L  C  N  S  F  L  L  P  P  L  C  S  L  P  R  R  S  *  A  S  S  Q  A  S  S  S  W  L  *  G  P  T  S  A  R  Y  D  P  P  *  R  A  N  H  G  P  L  S  K  I  I  S  M  R  S  P  S  H  F  L  L  G  L  I  C  I  H  F  L  K  A  S  E  C  S  T  F  F  F  I  V  L  P  V  M  *  N  L  K  T  Y  M  C  C  V  Y  N  V  Y  V  H  K  R  H  G  F  C   </first_frame>
            <second_frame>  K  D  Q  F  H  T  Y  L  H  S  I  I  H  S  T  N  F  F  T  N  L  S  K  F  L  K  N  L  L  D  F  I  K  I  P  M  A  N  T  D  E  S  N  P  L  L  P  N  Q  Q  S  E  V  K  D  E  K  N  P  N  K  P  I  S  S  T  T  P  V  P  P  F  P  A  D  P  V  K  P  L  S  A  V  V  P  M  G  W  T  V  E  G  V  P  M  G  H  G  V  V  V  D  P  I  M  N  R  A  Q  W  D  S  G  L  C  A  C  F  G  R  T  D  E  F  C  S  S  D  I  E  V   : C  L  L  G  S  M  A  P  C  V  L  Y  G  S  N  A  E  R  L  G  S  A  P  G  T  F  A  N  H  C  L  P  Y  T  G  L  F  L  I  G  Q  S  F  F  G  S  N  C  V  A  P  C  F  T  Y  P  S  R  T  A  I  R  R  K  F  N  L  E  :  G  S  C  E  A  F  N  R  S  S  G  C  C  G  S  F  I  E  D  E  V  Q  R  E  Q  C  E  S  V  C  D  F  A  T  H  F  F  C  H  P  C  A  L  C  Q  E  G  R  E  L  R  R  R  L  P  H  P  G  F  K  A  Q  Q  V  L  V  M  I  P  P  N  E  Q  T  M  G  R  *  A  R  L  F  R  *  G  V  Q  A  I  S  F  L  V  *  F  V  S  I  F  L  K  L  L  N  A  R  L  F  F  L  *  F  C  Q  L  C  K  T  *  R  P  I  C  V  V  F  I  M  C  M  C  I  K  D  M  D  S  A  </second_frame>
            <third_frame>   R  T  N  S  T  R  I  Y  T  A  L  Y  I  A  Q  I  S  S  P  I  F  Q  N  S  S  K  I  F  L  I  S  S  K  S  Q  W  Q  I  P  M  N  R  T  H  F  Y  P  I  N  N  L  R  *  K  M  R  R  I  P  I  N  P  F  L  Q  Q  P  Q  F  H  R  F  R  R  I  R  *  S  L  Y  Q  P  L  F  R  W  D  G  Q  L  K  G  S  P  W  V  M  E  L  S  L  I  R  L  *  I  G  L  S  G  I  L  D  F  V  L  V  L  E  G  L  M  S  S  A  A  V  I  L  K  F  :  V  Y  *  V  A  W  P  H  A  C  S  T  G  A  M  L  R  D  L  V  L  L  Q  G  L  L  P  I  T  A  C  L  T  L  A  S  S  *  L  D  N  P  S  L  A  R  T  V  W  H  L  A  L  H  I  P  V  V  Q  L  S  A  G  S  S  I  L  R :   G  A  V  R  P  S  T  G  L  V  G  A  A  G  A  L  L  R  T  R  C  N  A  S  N  V  S  Q  F  V  T  L  Q  L  I  S  S  A  T  L  V  L  F  A  K  K  V  V  S  F  V  A  G  F  L  I  L  A  L  R  P  N  K  C  S  L  *  S  P  L  T  S  K  P  W  A  A  K  Q  D  Y  F  D  E  E  S  K  P  F  P  S  W  F  D  L  Y  P  F  S  *  S  F  *  M  L  D  F  F  F  Y  S  F  A  S  Y  V  K  L  E  D  L  Y  V  L  C  L  *  C  V  C  A  *  K  T  W  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83234" stop="82841"/>
                    <exon start="81592" stop="81390"/>
                    <exon start="80477" stop="80244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDQFHTYLHSIIHSTNFFTNLSKFLKNLLDFIKIPMANTDESNPLLPNQQSEVKDEKNPNKPISSTTPVPPFPADPVKPLSAVVPMGWTVEGVPMGHGVVVDPIMNRAQWDSGLCACFGRTDEFCSSDIEVCLLGSMAPCVLYGSNAERLGSAPGTFANHCLPYTGLFLIGQSFFGSNCVAPCFTYPSRTAIRRKFNLEGSCEAFNRSSGCCGSFIEDEVQREQCESVCDFATHFFCHPCALCQEGRELRRRLPHPGFKAQQVLVMIPPNEQTMGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="122122" PGL_stop="127879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122122" e_stop="122296"/>
            <exon e_start="122470" e_stop="122517"/>
            <exon e_start="122693" e_stop="122822"/>
            <exon e_start="122936" e_stop="123057"/>
            <exon e_start="123171" e_stop="123262"/>
            <exon e_start="124107" e_stop="124203"/>
            <exon e_start="124298" e_stop="124378"/>
            <exon e_start="124466" e_stop="124695"/>
            <exon e_start="125413" e_stop="125607"/>
            <exon e_start="125792" e_stop="125882"/>
            <exon e_start="126931" e_stop="127053"/>
            <exon e_start="127232" e_stop="127382"/>
            <exon e_start="127510" e_stop="127879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.914"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.792"/>
          <exon-intron don_prob="0.997" acc_prob="0.908" e_score="0.946"/>
          <exon-intron don_prob="0.722" acc_prob="0.994" e_score="0.918"/>
          <exon-intron don_prob="0.735" acc_prob="0.933" e_score="0.967"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.969"/>
          <exon-intron don_prob="0.973" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="122122" e_stop="122296" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122297" i_stop="122469" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.792">
            <gDNA_exon_boundary e_start="122470" e_stop="122517" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122518" i_stop="122692" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="122693" e_stop="122822" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122823" i_stop="122935" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.918">
            <gDNA_exon_boundary e_start="122936" e_stop="123057" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.722" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123058" i_stop="123170" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="123171" e_stop="123262" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.933">
            <gDNA_intron_boundary i_start="123263" i_stop="124106" i_length="844"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="124107" e_stop="124203" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124298" e_stop="124378" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.960">
            <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124466" e_stop="124695" e_length="230"/>
          </exon>
          <intron i_serial="8" don_prob="0.904" acc_prob="0.911">
            <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="125413" e_stop="125607" e_length="195"/>
          </exon>
          <intron i_serial="9" don_prob="0.934" acc_prob="0.984">
            <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="125792" e_stop="125882" e_length="91"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="126931" e_stop="127053" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="127232" e_stop="127382" e_length="151"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127"/>
          </intron>
          <exon e_serial="13" e_score="0.992">
            <gDNA_exon_boundary e_start="127510" e_stop="127879" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122122" stop="122296"/>
              <exon start="122470" stop="122517"/>
              <exon start="122693" stop="122822"/>
              <exon start="122936" stop="123057"/>
              <exon start="123171" stop="123262"/>
              <exon start="124107" stop="124203"/>
              <exon start="124298" stop="124378"/>
              <exon start="124466" stop="124695"/>
              <exon start="125413" stop="125607"/>
              <exon start="125792" stop="125882"/>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127382"/>
              <exon start="127510" stop="127741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7675-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124174" stop="124203"/>
              <exon start="124298" stop="124378"/>
              <exon start="124466" stop="124695"/>
              <exon start="125413" stop="125607"/>
              <exon start="125792" stop="125882"/>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127382"/>
              <exon start="127510" stop="127879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAACTTGTCTCTCAGCTGCCAAAAATAACTTGTAGCGTTGCTCCAATTTTCAGCTCCAATTTGCTCTGCAATCGAAAACCCATCTCAGAGTTATGGAAAAAGATGCATCTTTTTTGTTTGGTGGCATCTCTTTCAATCGAAAAAAGTTTGCTCGCGATTTCGACAGATTTAAG : GGGAAAATTCAAGTTGATTCAGCTGAGAAACTGAACTTTATTGACAAG : GAGGATAAAACTATTGATGATTCGTTAGAGAAAGTGGAGTTTGTCGAGAATGAGATATCTGGAATGGAGGATGGGACAAGTACTAGCGTGAGTAAGAAGAGGAAGAGGAAGGAGAAGGGAAAAGTTCCTG : ATGTGGAGGGATTTTCTGTCTTCAAGAGTTCAAAATTGAAAGAGGAAGCTGCAAGCGAAGAGACTGATCAATCTGTAAATGAACTGCTTCAGGGAAAGAAAGAATATTATCAACAATTGGAG : AGGGACGCAATTTTTCGGAAGATGCACAACATTCATGTTTCAGGGAGTAACATCCCTTCGCCATTGCTCAATTTTTCTGAACTAAGATCAAG : ATATGAATGTCGATCATATCTATTGCGAAATCTGGCAAAACTAGGATTTAAAGAACCAACGCCAATCCAAAGGCAGACTATTCCAGTCCTCTTATCT : GGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAG : CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG : GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA : AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG : AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG : AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG : GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATGAATGTTGTCTTTTTTTTTTGAAAAGAAACTCTTTTTA</gDNA_template>
            <first_frame> P  N  L  S  L  S  C  Q  K  *  L  V  A  L  L  Q  F  S  A  P  I  C  S  A  I  E  N  P  S  Q  S  Y  G  K  R  C  I  F  F  V  W  W  H  L  F  Q  S  K  K  V  C  S  R  F  R  Q  I  *   : G  E  N  S  S  *  F  S  *  E  T  E  L  Y  *  Q   : G  G  *  N  Y  *  *  F  V  R  E  S  G  V  C  R  E  *  D  I  W  N  G  G  W  D  K  Y  *  R  E  *  E  E  E  E  E  G  E  G  K  S  S  * :   C  G  G  I  F  C  L  Q  E  F  K  I  E  R  G  S  C  K  R  R  D  *  S  I  C  K  *  T  A  S  G  K  E  R  I  L  S  T  I  G   : E  G  R  N  F  S  E  D  A  Q  H  S  C  F  R  E  *  H  P  F  A  I  A  Q  F  F  *  T  K  I  K  :  I  *  M  S  I  I  S  I  A  K  S  G  K  T  R  I  *  R  T  N  A  N  P  K  A  D  Y  S  S  P  L  I   : W  A  *  M  L  C  L  C  T  Y  W  F  W  Q  N  I  C  F  C  F  S  C  T  Y  E  T  Q   : A  H  F  K  G  W  C  P  S  C  N  S  F  P  Y  K  R  V  S  C  S  D  N  K  R  M  Q  K  V  G  Q  E  E  V  L  H  Q  V  D  D  *  T  T  R  *  K  W  G  L  F  *  T  A  M  *  C  T  D  L  D  T  I  A  P  K  V  C  Y  P  K  K  K  A  *  F  K  *  :  G  *  I  S  C  L  R  *  I  *  *  A  F  R  A  W  H  A  R  A  G  *  F  C  G  E  G  V  H  K  S  F  N  S  S  V  I  V  Q  C  Y  F  T  R  Y  S  *  R  P  S  T  Y  N  N  A  *  C  C  S  S  N  Y  W  *  E  :  K  F  S  F  *  N  N  R  A  K  T  G  I  C  W  E  *  R  R  E  A  S  G  S  S  S  K  L  C  R   : E  F  K  P  T  S  A  S  I  R  S  K  Q  G  A  C  Q  G  A  I  *  R  V  K  I  G  R  Y  S  S  R  C  Y  P  F  R  P  F  S  D  T   : E  R  K  C  Y  R  *  L  *  S  W  K  N  M  G  F  N  C  H  *  C  C  C  P  G  Y  G  F  Q  R  G  Q  L  R  D  K  L  *  F  P  R  R  C  C  S  I  Y  S  Q  N  W :   T  F  W  Q  S  R  K  E  W  T  G  D  N  I  L  Y  *  S  R  Y  S  L  F  E  E  H  R  K  C  Y  Y  V  F  W  W  *  G  S  G  V  D  H  V  S  D  Q  E  K  V  E  E  T  Q  A  A  K  R  N  H  F  N  S  A  R  H  M  N  H  P  S  *  F  *  A  Q  Y  Q  V  F  *  T  F  L  F  I  Q  H  *  C  M  I  Q  L  V  I  Y  V  K  Y  E  F  G  M  F  T  *  M  I  E  K  *  M  L  S  F  F  F  E  K  K  L  F  L </first_frame>
            <second_frame>  P  T  C  L  S  A  A  K  N  N  L  *  R  C  S  N  F  Q  L  Q  F  A  L  Q  S  K  T  H  L  R  V  M  E  K  D  A  S  F  L  F  G  G  I  S  F  N  R  K  K  F  A  R  D  F  D  R  F  K  :  G  K  I  Q  V  D  S  A  E  K  L  N  F  I  D  K  :  E  D  K  T  I  D  D  S  L  E  K  V  E  F  V  E  N  E  I  S  G  M  E  D  G  T  S  T  S  V  S  K  K  R  K  R  K  E  K  G  K  V  P   : D  V  E  G  F  S  V  F  K  S  S  K  L  K  E  E  A  A  S  E  E  T  D  Q  S  V  N  E  L  L  Q  G  K  K  E  Y  Y  Q  Q  L  E  :  R  D  A  I  F  R  K  M  H  N  I  H  V  S  G  S  N  I  P  S  P  L  L  N  F  S  E  L  R  S  R :   Y  E  C  R  S  Y  L  L  R  N  L  A  K  L  G  F  K  E  P  T  P  I  Q  R  Q  T  I  P  V  L  L  S  :  G  R  E  C  F  A  C  A  P  T  G  S  G  K  T  F  A  F  V  F  P  V  L  M  K  L  K  :  H  T  S  K  D  G  V  R  A  V  I  L  S  P  T  K  E  L  A  A  Q  T  T  R  E  C  K  K  L  A  R  K  K  F  Y  I  R  L  M  T  K  Q  L  A  K  S  G  D  F  S  K  L  R  C  D  V  L  I  S  T  P  L  R  L  K  F  A  I  Q  K  R  K  L  D  L  S  R :   V  E  Y  L  V  L  D  E  S  D  K  L  F  E  P  G  M  L  E  Q  V  D  F  V  V  K  A  C  T  N  P  S  I  L  R  S  L  F  S  A  T  L  P  D  I  V  E  D  R  A  R  T  I  M  H  D  A  V  R  V  I  I  G  R  K :   N  S  A  S  E  T  I  E  Q  K  L  V  Y  V  G  S  E  E  G  K  L  L  A  L  R  Q  S  F  A  E  :  S  L  N  P  P  V  L  V  F  V  Q  N  K  E  R  A  K  E  L  Y  D  E  L  K  L  E  D  I  R  A  D  V  I  H  S  D  L  S  Q  I  Q  :  R  E  N  A  I  D  N  F  R  A  G  K  T  W  V  L  I  A  T  D  V  V  A  R  G  M  D  F  K  G  V  N  C  V  I  N  Y  D  F  P  D  A  A  A  A  Y  I  H  R  I   : G  R  S  G  R  A  G  R  S  G  Q  A  I  T  F  Y  T  E  A  D  I  P  F  L  R  N  I  A  N  V  I  T  S  S  G  G  E  V  P  E  W  I  M  S  L  T  K  K  K  W  R  K  H  R  P  R  R  E  T  I  S  T  Q  P  D  I  *  T  I  P  H  S  F  E  H  N  I  K  F  F  E  L  F  F  L  Y  N  I  N  V  *  F  N  L  *  F  M  L  S  M  S  L  E  C  S  L  K  *  *  R  N  E  C  C  L  F  F  L  K  R  N  S  F   </second_frame>
            <third_frame>   Q  L  V  S  Q  L  P  K  I  T  C  S  V  A  P  I  F  S  S  N  L  L  C  N  R  K  P  I  S  E  L  W  K  K  M  H  L  F  C  L  V  A  S  L  S  I  E  K  S  L  L  A  I  S  T  D  L  R :   G  K  F  K  L  I  Q  L  R  N  *  T  L  L  T  R :   R  I  K  L  L  M  I  R  *  R  K  W  S  L  S  R  M  R  Y  L  E  W  R  M  G  Q  V  L  A  *  V  R  R  G  R  G  R  R  R  E  K  F  L  :  M  W  R  D  F  L  S  S  R  V  Q  N  *  K  R  K  L  Q  A  K  R  L  I  N  L  *  M  N  C  F  R  E  R  K  N  I  I  N  N  W  R :   G  T  Q  F  F  G  R  C  T  T  F  M  F  Q  G  V  T  S  L  R  H  C  S  I  F  L  N  *  D  Q   : D  M  N  V  D  H  I  Y  C  E  I  W  Q  N  *  D  L  K  N  Q  R  Q  S  K  G  R  L  F  Q  S  S  Y  L :   G  V  N  A  L  L  V  H  L  L  V  L  A  K  H  L  L  L  F  F  L  Y  L  *  N  S  S :   T  L  Q  R  M  V  S  E  L  *  F  F  P  L  Q  K  S  *  L  L  R  Q  Q  E  N  A  K  S  W  P  G  R  S  S  T  S  G  *  *  L  N  N  S  L  K  V  G  T  F  L  N  C  D  V  M  Y  *  S  R  H  H  C  A  *  S  L  L  S  K  K  E  S  L  I  *  V   : G  L  N  I  L  S  *  M  N  L  I  S  F  S  S  L  A  C  *  S  R  L  I  L  W  *  R  R  A  Q  I  L  Q  F  F  G  H  C  S  V  L  L  Y  P  I  *  L  K  T  E  H  V  Q  *  C  M  M  L  F  E  *  L  L  V  G   : K  I  Q  L  L  K  Q  *  S  K  N  W  Y  M  L  G  V  K  K  G  S  F  W  L  F  V  K  A  L  Q  R :   V  *  T  H  Q  C  *  Y  S  F  K  T  R  S  V  P  R  S  Y  M  T  S  *  N  W  K  I  F  E  Q  M  L  S  I  Q  T  F  L  R  Y  R :   E  K  M  L  S  I  T  L  E  L  E  K  H  G  F  *  L  P  L  M  L  L  P  G  V  W  I  S  K  G  S  T  A  *  *  I  M  I  S  Q  T  L  L  Q  H  I  F  T  E  L  :  D  V  L  A  E  Q  E  G  V  D  R  R  *  H  F  I  L  K  Q  I  F  P  F  *  G  T  S  Q  M  L  L  R  L  L  V  V  R  F  R  S  G  S  C  L  *  P  R  K  S  G  G  N  T  G  R  E  E  K  P  F  Q  L  S  Q  T  Y  E  P  S  L  I  V  L  S  T  I  S  S  F  L  N  F  S  F  Y  T  T  L  M  Y  D  S  T  C  N  L  C  *  V  *  V  W  N  V  H  L  N  D  R  E  M  N  V  V  F  F  F  *  K  E  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122159" stop="122296"/>
                    <exon start="122470" stop="122517"/>
                    <exon start="122693" stop="122822"/>
                    <exon start="122936" stop="123057"/>
                    <exon start="123171" stop="123262"/>
                    <exon start="124107" stop="124203"/>
                    <exon start="124298" stop="124378"/>
                    <exon start="124466" stop="124695"/>
                    <exon start="125413" stop="125607"/>
                    <exon start="125792" stop="125882"/>
                    <exon start="126931" stop="127053"/>
                    <exon start="127232" stop="127382"/>
                    <exon start="127510" stop="127709"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCSNFQLQFALQSKTHLRVMEKDASFLFGGISFNRKKFARDFDRFKGKIQVDSAEKLNFIDKEDKTIDDSLEKVEFVENEISGMEDGTSTSVSKKRKRKEKGKVPDVEGFSVFKSSKLKEEAASEETDQSVNELLQGKKEYYQQLERDAIFRKMHNIHVSGSNIPSPLLNFSELRSRYECRSYLLRNLAKLGFKEPTPIQRQTIPVLLSGRECFACAPTGSGKTFAFVFPVLMKLKHTSKDGVRAVILSPTKELAAQTTRECKKLARKKFYIRLMTKQLAKSGDFSKLRCDVLISTPLRLKFAIQKRKLDLSRVEYLVLDESDKLFEPGMLEQVDFVVKACTNPSILRSLFSATLPDIVEDRARTIMHDAVRVIIGRKNSASETIEQKLVYVGSEEGKLLALRQSFAESLNPPVLVFVQNKERAKELYDELKLEDIRADVIHSDLSQIQRENAIDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDAAAAYIHRIGRSGRAGRSGQAITFYTEADIPFLRNIANVITSSGGEVPEWIMSLTKKKWRKHRPRRETISTQPDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 11016 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2203 bytes was the average size of a spliced alignment
$ 8424 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2808 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:38:00
-->
