<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 08:25:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367383" ref_strand="+" ref_description="SGN-E367383 [cLPT-7-K22]">
      <seq>tttctctctctttacgtgtttggcttttcttttatctaaaataataatgtagtaaaaataataattatctccctatattaattctcaaaaaaaaaaattattcataaattaaatttattcgtctcaatcaaccgatcatccacaagcaaaagctaccggtttcttcaccggcaaaacttttccgtataccacacagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactctcttgttcatgctagggaagctggcggcttattattgtcagatgaaggatattgccctagattcataagaatgggtttcctgggctaaatagttcatactagggctttgttggagttgatttgagcttaatattgggcatgtgatcaaattccatttctattggcatatcttgttttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="-" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="11915" stop="8154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11615" g_stop="11429" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11428" i_stop="9481" i_length="1948">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9480" g_stop="9381" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9380" i_stop="8625" i_length="756">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8624" g_stop="8454" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="455" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="-" ref_id="SGN-E367383" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11615" e_stop="11429"/>
          <exon e_start="9480" e_stop="9381"/>
          <exon e_start="8624" e_stop="8454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</genome_strand>
        <mrna_strand>TTTCTCTCTCTTTACGTGTTTGGCTTTTCTTTTATCTAAAATAATAATG-TAGTAAAAATAATAATTATCTCCCTATATTAATTCTCA--AAAAAAAAAATTATTCATAAATTAAATTTATTCGTCTCAATCAACCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCACACAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCTCTTGTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367521" ref_strand="+" ref_description="SGN-E367521 [cLPT-7-K16]">
      <seq>tttctctctctttacgtgtttgtcttttcttttatctaaaataataatgtagtaaaaataataattatctccctatattaattctcaaaaaaaaaaattattcataaattaaatttattcgtctcaatcaaccgatcatccacaagcaaaagctaccggtttcttcaccggcaaaacttttccgtataccacacagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactctcttgttcatgctagggaagctggcggcttattattgtcagatgaaggatattgccctagattcataagaatgggtttcctgggctaaatagttcatactagggctttgttggagttgatttgagcttaatattgggcatgtgatcaaattccatttctattggcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="-" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="11915" stop="8165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11615" g_stop="11429" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11428" i_stop="9481" i_length="1948">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9480" g_stop="9381" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9380" i_stop="8625" i_length="756">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8624" g_stop="8465" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="444" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="-" ref_id="SGN-E367521" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11615" e_stop="11429"/>
          <exon e_start="9480" e_stop="9381"/>
          <exon e_start="8624" e_stop="8465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATC</genome_strand>
        <mrna_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATG-TAGTAAAAATAATAATTATCTCCCTATATTAATTCTCA--AAAAAAAAAATTATTCATAAATTAAATTTATTCGTCTCAATCAACCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCACACAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCTCTTGTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314248" ref_strand="+" ref_description="SGN-E314248 [cTOA-21-J13]">
      <seq>taaacttcataacggcttgccttagggtactcgtcaaagcctcccagtattcactaactcagtccaccacctccatcggccgccggcggccatttccaacgaacttttctcatctccgacgtcgtattttctcttctaaacccgataatatggctgactcggagagtaaatcacacgagacagggaaaaattgcaaaccggaggcagcagcatcagaaggaaaacaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagccgaagcagcaaaacaggcacaagccagctccactgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagcgctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcacttactgctgccatcgaggatactattattcgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16255" stop="19730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16555" g_stop="16706" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="203" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="272" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="502" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="575" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="641" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19412" g_stop="19430" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="660" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E314248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16555" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGC</genome_strand>
        <mrna_strand>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG.................................................................................GATACTATTATTCGTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737100" ref_strand="+" ref_description="SGN-E737100 [LC08CA01]">
      <seq>ggcttgccttagggtactcgtcaaagcctcccagtattcactaactcagtccaccacctccatcggccgccggcggccatttccaacgaacttttctcatctccgacgtcgtattttctcttctaaacccgataatatggctgactcggagagtaaatcacacgagacagggaaaaattgcaaaccggaggcagcagcatcagaaggaaaacaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagccgaagcagcaaaacaggcacaagccagctccactgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagcgctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcacttactgctgccatcgaggatactattattcgttggcggagaatgtctggatacaacaccttgtgggtccccgggatggatcatgctgggatagcaactcaggttgttgtggagaagaagatcatgcgagaaaggaatttgactagacatgatattggtcgggagaagtttgttgctgaggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16268" stop="20021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16568" g_stop="16706" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="190" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="259" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="319" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="489" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="562" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="628" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19412" g_stop="19495" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="712" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19642" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="790" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20011" g_stop="20016" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="796" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E737100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16568" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19495"/>
          <exon e_start="19642" e_stop="19719"/>
          <exon e_start="20011" e_stop="20016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGG</genome_strand>
        <mrna_strand>GGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAG...................................................................................................................................................................................................................................................................................................GTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455674" ref_strand="+" ref_description="SGN-E455674 [cSTS-27-A7]">
      <seq>gtcaaagcctcccagtattcactagctcagtccaccacctacatcggccggcggcggccattcccgacgaacttttcttatctacgacgtcgtattttctcttctaaacccgataatatggctgagtcggagagtaaatcacacgagacagtgaaaaattgcaaaccggaggcagcagcatcagaaggaaagcaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagcggaagcagcaaaacaggcacaagccagctccgctgtgtcaaagactgctaagaagaagggctcaaaaagggatggtggagaggagaaccctgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcatggtgggaaaagtccaaattttttgttgcagacccaaacagctctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctncatatangacatgcactcactgctgccatcgnagatactattattcgttggcggagaatgtctggatacaataccttgtgggtccccgggatggatcatgctgggatcgcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16287" stop="19793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16587" g_stop="16706" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="171" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="240" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="300" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="470" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="543" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="609" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="0.90"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19412" g_stop="19493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="691" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E455674" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16587" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTC</genome_strand>
        <mrna_strand>GTCAAAGCCTCCCAGTATTCACTAGCTCAGTCCACCACCTACATCGGCCGGCGGCGGCCATTCCCGACGAACTTTTCTTATCTACGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGAGTCGGAGAGTAAATCACACGAGACAGTGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAGCAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCGGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCGCTGTGTCAAAGACTGCTAAGAAGAAGGGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCATGGTGGGAAAAGTCCAAATTTTTTGTTGCAGACCCAAACAGCTCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTNCATATANGACATGCACTCACTGCTGCCATCGNA.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAATACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATCGCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315657" ref_strand="+" ref_description="SGN-E315657 [cTOA-22-D14]">
      <seq>tcaaagcctcccagtattcactaactcagtccaccacctccatcggccgccggcggccatttccaacgaacttttctcatctccgacgtcgtattttctcttctaaacccgataatatggctgactcggagagtaaatcacacgagacagggaaaaattgcaaaccggaggcagcagcatcagaaggaaaacaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagccgaagcagcaaaacaggcacaagccagctccactgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagcgctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataagacatgcacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16288" stop="19618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16588" g_stop="16706" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="170" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="239" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="299" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="469" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="542" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19318" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="596" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E315657" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16588" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACT</genome_strand>
        <mrna_strand>TCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAAGACATGCACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564679" ref_strand="+" ref_description="SGN-E564679 [2928]">
      <seq>ctagctcagtccaccacctatatcggccggcggcggcaattcccgacgaacttttcttatctacgacgtcgtattttctcttctaaacccgataatatggctgagtcggagagtaagtcacacgagacagtgaaaaattgcaaaccggaggcagcagcatcagaaggaaagcaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagcggaagcagcaaaacaggcacaagccagctccgctgtgccaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaacactgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaaaacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagctctaaaccacctttttgtgattgtcttgcccccaccaaatgtgactggtgctcttccatataggacatgcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16308" stop="19616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16608" g_stop="16706" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="150" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="219" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="279" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="449" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="523" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19316" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="576" r_length="53" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E564679" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16608" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACC-TTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTC-TCCATATAGGACATGCACTTA</genome_strand>
        <mrna_strand>CTAGCTCAGTCCACCACCTATATCGGCCGGCGGCGGCAATTCCCGACGAACTTTTCTTATCTACGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGAGTCGGAGAGTAAGTCACACGAGACAGTGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAGCAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCGGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCGCTGTGCCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACACTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAAACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCTCTAAACCACCTTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTTCCATATAGGACATGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444482" ref_strand="+" ref_description="SGN-E444482 [cSTA-43-G9]">
      <seq>cggcggcggcaattcccgacgaacttttcttagctacgacgtcgtattttctcttctaaacccgataatatggctgagtcggagagtaagtcacacgagacagtgaaaaattgcaaaccggaggcagcagcatcagaaggaaagcaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagcggaagcagcaaaacaggcacaagccagctccgctgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaacactgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaaaacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagctctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16335" stop="19618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16635" g_stop="16706" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="123" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="192" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="252" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="422" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="495" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19318" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="549" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E444482" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16635" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACT</genome_strand>
        <mrna_strand>CGGCGGCGGCAATTCCCGACGAACTTTTCTTAGCTACGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGAGTCGGAGAGTAAGTCACACGAGACAGTGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAGCAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCGGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCGCTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACACTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAAACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCTCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561073" ref_strand="+" ref_description="SGN-E561073 [20826]">
      <seq>gcggccattccgacgaactttccttatctacgacgtcgtattttctcttctaaacccgataatatggctgagtcggagagtaagtcacacgagacagtgaaaaattgcaaaccggaggcagcagcatcagaaggaaagcaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagcggaagtagcaaaacaggcacaagccagctccgctgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgtttcgtccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagtctaaacaccttttgtgattgtcttgcccccaccaagtgtgactggtgctctccatataggacatgcactcgctgctgcattgaggatactattattcgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16340" stop="19730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16640" g_stop="16706" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85">
            <donor d_prob="0.953" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16792" g_stop="16842" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="117" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16917" g_stop="16985" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="186" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17258" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="246" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="417" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="488" r_length="71" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="553" r_length="65" r_score="0.924"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="0.90"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19412" g_stop="19430" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="572" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E561073" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16640" e_stop="16706"/>
          <exon e_start="16792" e_stop="16842"/>
          <exon e_start="16917" e_stop="16985"/>
          <exon e_start="17199" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTT-GATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGC</genome_strand>
        <mrna_strand>GCGGCCA-TTCCGACGAACTTTCCTTATCTACGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGAGTCGGAGAGTAAGTCACACGAGACAGTGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAGCAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCGGAAGTAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCGCTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTTCGTCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAG-TCTAAA-CACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAGTGTGACTGGTGCTCTCCATATAGGACATGCACTCGCTGCTG-CATTGAG.................................................................................GATACTATTATTCGTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357244" ref_strand="+" ref_description="SGN-E357244 [cLHT-17-D12]">
      <seq>tagagagaaagagttgaaaaaactcaaggctgcacaaaaagcggaagcagcaaaacaggcacaagccagctccgctgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgatgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagcgctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcacttactgctgccatcgaggatactattattcgttggcggagaatgtctggatacaacaccttgtgggtccccgggatggatcatgctgggatagcaactcaggttgttgtggagaagaagatcatgccagaaaggaatttgactagacatgatattggtcgggagaagttcgttgctgacgtctggaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="16901" stop="20029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17201" g_stop="17258" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17515" g_stop="17684" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="228" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17786" g_stop="17858" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="301" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="367" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19412" g_stop="19495" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="451" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19642" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="529" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20011" g_stop="20022" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="541" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E357244" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17201" e_stop="17258"/>
          <exon e_start="17515" e_stop="17684"/>
          <exon e_start="17786" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19495"/>
          <exon e_start="19642" e_stop="19719"/>
          <exon e_start="20011" e_stop="20022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGGAATTGG</genome_strand>
        <mrna_strand>TAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCGGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCGCTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGATGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCCAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTCGTTGCTGAC...................................................................................................................................................................................................................................................................................................GTCTGGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477439" ref_strand="+" ref_description="SGN-E477439 [cSTB-48-O11]">
      <seq>gggaaaagtccaatttctttgttgcagacccaaacagctctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcactcactgctgccattgaggatactattattcgttggcggagaatgtctggatacaataccttgtgggtccccgggatggatcatgctgggatcgcaactcaggttgttgtggagaagaagatcatgcgagaaaggaatttgactagacatgatattggtcgggagaactttgttgctgaggtctggaattggaagaatgagtatgggggtactatactacagcaattacgtcgcctgggtgcgtcacttgattggtctcgtgagtgctttaccatggatgagaaaaggtccaaggctgtaactgaagcatttgttaggctttccaatgaaggtcttatataccgggctccacgtatggtgcattgggattgtgtcttgcgtactgcaatctctgatattgaggttgaatatacagacatcaaagagaggacacttctgaatgttcctggatatgaagagcctgtggagttcgggttgctgacctcatttgcttaccccttagaaggcgatcttggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="17500" stop="20962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17800" g_stop="17858" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="125" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19412" g_stop="19495" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="209" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19642" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="287" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20011" g_stop="20094" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="371" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20095" i_stop="20198" i_length="104">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20199" g_stop="20278" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="451" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20408" g_stop="20465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="509" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20545" g_stop="20662" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="627" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E477439" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17800" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19495"/>
          <exon e_start="19642" e_stop="19719"/>
          <exon e_start="20011" e_stop="20094"/>
          <exon e_start="20199" e_stop="20278"/>
          <exon e_start="20408" e_stop="20465"/>
          <exon e_start="20545" e_stop="20662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAGGTATGAACCGCAAGTTTAACCTTTTCTTTCCTGTGTTGGGAAAATCCCGAAGTAGTTGTACCATTCTTATTTGTTGTGCTCTAACACATGTTCTGTAAAATCAGTGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGTATGCAGCTCCTTTATTTTCTTTGTCTGCCTTATCTCCTCATTATGTGCATGTATAGCATATTCTTGAGTGCGCAGGTTTCTTGAAATAATTTTGGCTCTACATTTAACCTTGTTATCATCTATCAAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTGAGTCATGATGAATCAAGTCTAAGATGTTGTGGCAAATATATCCTTATTCACCGTTGAAAGTTGCTGCTGTTCGTAGGTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAA</genome_strand>
        <mrna_strand>GGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCTCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTCACTGCTGCCATTGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAATACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATCGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAACTTTGTTGCTGAG...................................................................................................................................................................................................................................................................................................GTCTGGAATTGGAAGAATGAGTATGGGGGTACTATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAG........................................................................................................TGCTTTACCATGGATGAGAAAAGGTCCAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACCG.................................................................................................................................GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG...............................................................................GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAGCCTGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588203" ref_strand="+" ref_description="SGN-E588203 [41751]">
      <seq>ctttgttgcagacccaaacagctctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcactcactgctgccattgaggatactattattcgttggcggagaatgtctggatacaataccttgtgggtccccgggatggatcatgctgggatcgcaactcaggttgttgtggagaagaagatcatgcgagaaaggaatttgactagacatgatattggtcgggagaactttgttgctgaggtctggaattggaagaatgagtatgggggtactatactacagcaattacgtcgcctgggtgcgtcacttgattggtctcgtgagtgctttaccatggatgagaaaaggtccaaggctgtaactgaagcatttgttaggctttccaatgaaggtcttatataccgggctccacgtatggtgcattgggattgtgtcttgcgtactgcaatctctgatattgaggttgaatatacagacatcaaagagaggacacttctgaatgttcctggatatgaagagcctgtggagttcgggttgctgacctcatttgcttaccccttagaaggcgatcttggtgaaattgttgtggcgaccaccagaattgaaactatgcttggtgatactgcaattgctatacatcctgaagacaaaagatacagtcacctttcacgggaaatttgctattcatccattcaagtggaaagaaagcttccaatagtttgtgatgatatacttgtagatatgaactttgggactggttgctgttaagataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="17516" stop="21150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17816" g_stop="17858" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="109" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19412" g_stop="19495" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="193" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19642" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="271" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20011" g_stop="20094" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="355" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20095" i_stop="20198" i_length="104">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20199" g_stop="20278" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="435" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20408" g_stop="20465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="493" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20545" g_stop="20847" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="800" r_length="307" r_score="0.960"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20848" i_stop="20943" i_length="96">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20944" g_stop="20948" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="805" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E588203" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17816" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19495"/>
          <exon e_start="19642" e_stop="19719"/>
          <exon e_start="20011" e_stop="20094"/>
          <exon e_start="20199" e_stop="20278"/>
          <exon e_start="20408" e_stop="20465"/>
          <exon e_start="20545" e_stop="20847"/>
          <exon e_start="20944" e_stop="20948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAGGTATGAACCGCAAGTTTAACCTTTTCTTTCCTGTGTTGGGAAAATCCCGAAGTAGTTGTACCATTCTTATTTGTTGTGCTCTAACACATGTTCTGTAAAATCAGTGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGTATGCAGCTCCTTTATTTTCTTTGTCTGCCTTATCTCCTCATTATGTGCATGTATAGCATATTCTTGAGTGCGCAGGTTTCTTGAAATAATTTTGGCTCTACATTTAACCTTGTTATCATCTATCAAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTGAGTCATGATGAATCAAGTCTAAGATGTTGTGGCAAATATATCCTTATTCACCGTTGAAAGTTGCTGCTGTTCGTAGGTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACC-TTCATGGGAAATTTGCTATTCATCCATTCAA-TGG-AAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGG-TGCTGTTAAGGTATTCTATATCATTATGTTCTGAATGTGGTGAAATAATTGTGGTGTCTCAAGTACTCATCATTGCTTATGGACCATTCTTTGAATATCCTGGCAGATAAC</genome_strand>
        <mrna_strand>CTTTGTTGCAGACCCAAACAGCTCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTCACTGCTGCCATTGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAATACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATCGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAACTTTGTTGCTGAG...................................................................................................................................................................................................................................................................................................GTCTGGAATTGGAAGAATGAGTATGGGGGTACTATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAG........................................................................................................TGCTTTACCATGGATGAGAAAAGGTCCAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACCG.................................................................................................................................GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG...............................................................................GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAGCCTGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTTCACGGGAAATTTGCTATTCATCCATTCAAGTGGAAAGAAAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTTGCTGTTAAG................................................................................................ATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582621" ref_strand="+" ref_description="SGN-E582621 [8254]">
      <seq>tctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcactcactgctgccattgaggatactattattcgttggcggagaatgtctggatacaataccttgtgggtccccgggatggatcatgctgggatcgcaactcaggttgttgtggagaagaagatcatgcgagaaaggaatttgactagacatgatattggtcgggagaactttgttgctgaggtctggaattggaagaatgagtatgggggtactatactacagcaattacgtcgcctgggtgcgtcacttgattggtctcgtgagtgctttaccatggatgagaaaaggtccaaggctgtaactgaagcatttgttaggctttccaatgaaggtcttatataccgggctccacgtatggtgcattgggattgtgtcttgcgtactgcaatctctgatattgaggttgaatatacagacatcaaagagagggacacttctgaatgttcctggatatgaagagcctgtggagttcggggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="17539" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17838" g_stop="17858" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19265" g_stop="19330" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="87" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19412" g_stop="19495" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="171" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19642" g_stop="19719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="249" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20011" g_stop="20094" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="333" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20095" i_stop="20198" i_length="104">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20199" g_stop="20278" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20408" g_stop="20465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="471" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20545" g_stop="20619" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="548" r_length="77" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E582621" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17838" e_stop="17858"/>
          <exon e_start="19265" e_stop="19330"/>
          <exon e_start="19412" e_stop="19495"/>
          <exon e_start="19642" e_stop="19719"/>
          <exon e_start="20011" e_stop="20094"/>
          <exon e_start="20199" e_stop="20278"/>
          <exon e_start="20408" e_stop="20465"/>
          <exon e_start="20545" e_stop="20619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAGGTATGAACCGCAAGTTTAACCTTTTCTTTCCTGTGTTGGGAAAATCCCGAAGTAGTTGTACCATTCTTATTTGTTGTGCTCTAACACATGTTCTGTAAAATCAGTGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGTATGCAGCTCCTTTATTTTCTTTGTCTGCCTTATCTCCTCATTATGTGCATGTATAGCATATTCTTGAGTGCGCAGGTTTCTTGAAATAATTTTGGCTCTACATTTAACCTTGTTATCATCTATCAAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTGAGTCATGATGAATCAAGTCTAAGATGTTGTGGCAAATATATCCTTATTCACCGTTGAAAGTTGCTGCTGTTCGTAGGTTGAATATACAGACATCAAAGAGA-GGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTC-GGGTTG</genome_strand>
        <mrna_strand>TCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTCACTGCTGCCATTGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAATACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATCGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAACTTTGTTGCTGAG...................................................................................................................................................................................................................................................................................................GTCTGGAATTGGAAGAATGAGTATGGGGGTACTATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAG........................................................................................................TGCTTTACCATGGATGAGAAAAGGTCCAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACCG.................................................................................................................................GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG...............................................................................GTTGAATATACAGACATCAAAGAGAGGGACACTTCTGAATGTTCCTGGATATGAAGAGCCTGTGGAGTTCGGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584629" ref_strand="+" ref_description="SGN-E584629 [10456]">
      <seq>acgagggattggtctcgtgagtgctttaccatggatgagaaacaggtccaaggtctgtaactgaagcatttgttaggctttccaatgaaggtcttatataccgggctccacgtatggtgcattgggattgtgtcttgtgtactgcaatctctgatattgaggttgaatatacagacatcaaagagaggacacttctgaatgttcctggatatgaagagcctcgtggagttcgggttgctgacctcatttgcttaccccttagaattcgatcttggtgaaattgttgtgtggaccaccagaattgaaactatgcttggtgatactgcaattgctatacatcctgaaggacaaacagatacagtcaccttcacgggaaactttgctattcatccattcaatggaagaaagcttccaatagtttgtgatgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="19895" stop="21111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20074" g_stop="20094" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20095" i_stop="20198" i_length="104">
            <donor d_prob="0.624" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20199" g_stop="20278" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="103" r_length="82" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20408" g_stop="20465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="161" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20545" g_stop="20811" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="432" r_length="271" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E584629" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20074" e_stop="20094"/>
          <exon e_start="20199" e_stop="20278"/>
          <exon e_start="20408" e_stop="20465"/>
          <exon e_start="20545" e_stop="20811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGATTGGTCTCGTGAGGTATGAACCGCAAGTTTAACCTTTTCTTTCCTGTGTTGGGAAAATCCCGAAGTAGTTGTACCATTCTTATTTGTTGTGCTCTAACACATGTTCTGTAAAATCAGTGCTTTACCATGGATGAGAAA-AGGTCTAAGG-CTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGTATGCAGCTCCTTTATTTTCTTTGTCTGCCTTATCTCCTCATTATGTGCATGTATAGCATATTCTTGAGTGCGCAGGTTTCTTGAAATAATTTTGGCTCTACATTTAACCTTGTTATCATCTATCAAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTGAGTCATGATGAATCAAGTCTAAGATGTTGTGGCAAATATATCCTTATTCACCGTTGAAAGTTGCTGCTGTTCGTAGGTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACC-CGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAA-GACAAA-AGATACAGTCACCTTCATGGGAAA-TTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATA</genome_strand>
        <mrna_strand>ACGAGGGATTGGTCTCGTGAG........................................................................................................TGCTTTACCATGGATGAGAAACAGGTCCAAGGTCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACCG.................................................................................................................................GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGTGTACTGCAATCTCTGATATTGAG...............................................................................GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAGCCTCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAATTCGATCTTGGTGAAATTGTTGTGTGGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGGACAAACAGATACAGTCACCTTCACGGGAAACTTTGCTATTCATCCATTCAATGGAAGAAAGCTTCCAATAGTTTGTGATGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604801" ref_strand="+" ref_description="SGN-E604801 [74940]">
      <seq>caaggctgtaactgaagcatttgttaggctttccaatgaaggtcttatataccgggctccacgtatggtgcattgggattgtgtcttgcgtactgcaatctctgatattgaggttgaatatacagacatcaaagagaggacacttctgaatgttcctggatatgaagagcctgtggagttcgggttgctgacctcatttgcttaccccttagaaggcgatcttggtgaaattgttgtggcgaccaccagaattgaaactatgcttggtgatactgcaattgctatacatcctgaagacaaaagatacagtcaccttcacgggaaatttgctattcatccattcaatggaagaaagcttccaatagtttgtgatgatatacttgtagatatgaactttgggactggtgctgttaagataactccagcccatgatccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtgacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttggggtttgtccaagaagcaatgatgtagtggagcttcttataaagcctcaatggtttgtcaactgcaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="19926" stop="23826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20225" g_stop="20278" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20408" g_stop="20465" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="112" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20545" g_stop="20847" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="415" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20848" i_stop="20943" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20944" g_stop="21114" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="586" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23416" g_stop="23526" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="697" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E604801" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20225" e_stop="20278"/>
          <exon e_start="20408" e_stop="20465"/>
          <exon e_start="20545" e_stop="20847"/>
          <exon e_start="20944" e_stop="21114"/>
          <exon e_start="23416" e_stop="23526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGTATGCAGCTCCTTTATTTTCTTTGTCTGCCTTATCTCCTCATTATGTGCATGTATAGCATATTCTTGAGTGCGCAGGTTTCTTGAAATAATTTTGGCTCTACATTTAACCTTGTTATCATCTATCAAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTGAGTCATGATGAATCAAGTCTAAGATGTTGTGGCAAATATATCCTTATTCACCGTTGAAAGTTGCTGCTGTTCGTAGGTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAGGTATTCTATATCATTATGTTCTGAATGTGGTGAAATAATTGTGGTGTCTCAAGTACTCATCATTGCTTATGGACCATTCTTTGAATATCCTGGCAGATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATT</genome_strand>
        <mrna_strand>CAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACCG.................................................................................................................................GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG...............................................................................GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAGCCTGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCACGGGAAATTTGCTATTCATCCATTCAATGGAAGAAAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG................................................................................................ATAACTCCAGCCCATGATCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTGACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGGTTTGTCCAAGAAGCAATGATGTAGTGGAGCTTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571975" ref_strand="+" ref_description="SGN-E571975 [31055]">
      <seq>ggacactctgaatgtcctggatatgaagagcctgtggagttcgggttgctgacctcatttgcttaccccttagaaggcgatcttggtgaaattgttgtggcgaccaccagaattgaaactatgcttggtgatactgcaattgctatacatcctgaagacaaaagatacagtcaccttcatgggaaatttgctattcatccattcaatggaagaaagcttccaatagtttgtgatgatatacttgtagatatgaactttgggactggtgctgttaagattactccagcccatgatccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtgacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttgggatttgttcaagaagcaatgatgtagtggagcctctcataaagcctcaatggtttgtcaactgcaaaattatggccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="20270" stop="23834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20570" g_stop="20847" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20848" i_stop="20943" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="21114" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="447" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23534" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="566" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E571975" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20570" e_stop="20847"/>
          <exon e_start="20944" e_stop="21114"/>
          <exon e_start="23416" e_stop="23534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAGGTATTCTATATCATTATGTTCTGAATGTGGTGAAATAATTGTGGTGTCTCAAGTACTCATCATTGCTTATGGACCATTCTTTGAATATCCTGGCAGATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAA</genome_strand>
        <mrna_strand>GGACAC-TCTGAATG-TCCTGGATATGAAGAGCCTGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGAAAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG................................................................................................ATTACTCCAGCCCATGATCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTGACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTCATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723629" ref_strand="+" ref_description="SGN-E723629 [FC21AE01]">
      <seq>ggaagacagcttccaatagtttgtgatgatatacttgtagatatgaactttgggactggtgctgttaagataactccagcccatgacccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtaacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttgggatttgttcaagaagcaatgatgtagtggagcctcttataaagcctcaatggtttgtcaactgcaaaattatggccaagcaggctttggatgctgttgtggatgaggataatcagaaactggagatcatcccaaagcaatatggtgctgaatggagaagatggcttgagaatattcgtgattggtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataagcagaaggaatttggtgtgtctgacaatcactggattgttgctagaaatgaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="20479" stop="24465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20779" g_stop="20847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20848" i_stop="20943" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="21114" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="240" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23416" g_stop="23615" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="440" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24015" g_stop="24164" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="590" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E723629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20779" e_stop="20847"/>
          <exon e_start="20944" e_stop="21114"/>
          <exon e_start="23416" e_stop="23615"/>
          <exon e_start="24015" e_stop="24164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAGGTATTCTATATCATTATGTTCTGAATGTGGTGAAATAATTGTGGTGTCTCAAGTACTCATCATTGCTTATGGACCATTCTTTGAATATCCTGGCAGATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGGTGATTTTGGATTTTAAAAAAAAGGTTGAATAAATGCTAGGGTTCAAATGAGACATCAATTTGTGCTGTGGTCTCTACGACCCTATACATATGTACACTGGTGTAATTTGATGCACTGTGTTTTAGTTTCTAATTGATATCGTCTTTTCTTCATTGCGGCAATGGATATCCTATCATTTACTTTTTGTGCCAGTATCTCATCAGACATCAACGCATACATGCAAAAAACCTGGTTGTGATTTTTGTTATGGATTCAATTATACACTTAATACAGGATATACTTCCATAAAATGAACTTTATACAGGATATTTTGTGCCATTTTCTCATTTCTTGATGCATTATCTGCTTCAAAATCTTTTGTCCTCTATGTCAAGAAGACTTATGTGGTGAACATGCAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGA</genome_strand>
        <mrna_strand>GGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG................................................................................................ATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACAATCACTGGATTGTTGCTAGAAATGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454539" ref_strand="+" ref_description="SGN-E454539 [cSTS-23-L11]">
      <seq>gataactccagcccatgatccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtgacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttggggtttgttcaagaagcaatgatgtagtggagcctcttataaagcctcaatggtttgtcaactgcaaaattatggccaagcaggctttggatgctgttgtggatgaggataatcagaaactggagattatcccaaagcaatatgctgctgaatggaaaagatggcttgagaatattcgtgattggtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataagcagaaggaatttggtgtgtctgacgatcactggattgttgctagaaatgaagaagaagctcgagatttggcttctaggaaatttttggggaagaagattgttgagatctctcaagatccagatgtgcctgatacctggttttcgtctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="20643" stop="24560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="21114" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="23615" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="372" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399">
            <donor d_prob="0.858" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24015" g_stop="24260" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="618" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E454539" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="21114"/>
          <exon e_start="23416" e_stop="23615"/>
          <exon e_start="24015" e_stop="24260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGGTGATTTTGGATTTTAAAAAAAAGGTTGAATAAATGCTAGGGTTCAAATGAGACATCAATTTGTGCTGTGGTCTCTACGACCCTATACATATGTACACTGGTGTAATTTGATGCACTGTGTTTTAGTTTCTAATTGATATCGTCTTTTCTTCATTGCGGCAATGGATATCCTATCATTTACTTTTTGTGCCAGTATCTCATCAGACATCAACGCATACATGCAAAAAACCTGGTTGTGATTTTTGTTATGGATTCAATTATACACTTAATACAGGATATACTTCCATAAAATGAACTTTATACAGGATATTTTGTGCCATTTTCTCATTTCTTGATGCATTATCTGCTTCAAAATCTTTTGTCCTCTATGTCAAGAAGACTTATGTGGTGAACATGCAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCT</genome_strand>
        <mrna_strand>GATAACTCCAGCCCATGATCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTGACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGGTTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATTATCCCAAAGCAATATGCTGCTGAATGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTTGGGGAAGAAGATTGTTGAGATCTCTCAAGATCCAGATGTGCCTGATACCTGGTTTTCGTCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246007" ref_strand="+" ref_description="SGN-E246007 [cLEF-54-K18]">
      <seq>tccagcccatgacccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtaacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttgggatttgttcaagaagcaatgatgtagtggagcctcttataaagcctcaatggtttgtcaactgcaaaattatggccaagcaggctttggatgctgttgtggatgaggataatcagaaactggagatcatcccaaagcaatatggtgctgaatggagaagatggcttgagaatattcgtgattggtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataagcagaaggaatttggtgtgtctgacgatcactggattgttgctagaaatgaagaagaagctcgagatttggcttctaggaaattttcggggaagaagattgttgagctctctcaagatccagatgtgctggatacctggttttcgtctggtcttttcccattatctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="20649" stop="24576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="21114" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="23615" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="366" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24015" g_stop="24276" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="628" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E246007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="21114"/>
          <exon e_start="23416" e_stop="23615"/>
          <exon e_start="24015" e_stop="24276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGGTGATTTTGGATTTTAAAAAAAAGGTTGAATAAATGCTAGGGTTCAAATGAGACATCAATTTGTGCTGTGGTCTCTACGACCCTATACATATGTACACTGGTGTAATTTGATGCACTGTGTTTTAGTTTCTAATTGATATCGTCTTTTCTTCATTGCGGCAATGGATATCCTATCATTTACTTTTTGTGCCAGTATCTCATCAGACATCAACGCATACATGCAAAAAACCTGGTTGTGATTTTTGTTATGGATTCAATTATACACTTAATACAGGATATACTTCCATAAAATGAACTTTATACAGGATATTTTGTGCCATTTTCTCATTTCTTGATGCATTATCTGCTTCAAAATCTTTTGTCCTCTATGTCAAGAAGACTTATGTGGTGAACATGCAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTA</genome_strand>
        <mrna_strand>TCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209011" ref_strand="+" ref_description="SGN-E209011 [cLEC-38-D21]">
      <seq>ccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtaacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttgggatttgttcaagaagcaatgatgtagtggagcctcttataaagcctcaatggtttgtcaactgcaaaattatggccaagcaggctttggatgctgttgtggatgaggataatcagaaactggagatcatcccaaagcaatatggtgctgaatggagaagatggcttgagaatattcgtgattggtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="20662" stop="24407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20962" g_stop="21114" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23416" g_stop="23615" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="353" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24015" g_stop="24107" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="446" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E209011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20962" e_stop="21114"/>
          <exon e_start="23416" e_stop="23615"/>
          <exon e_start="24015" e_stop="24107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGGTGATTTTGGATTTTAAAAAAAAGGTTGAATAAATGCTAGGGTTCAAATGAGACATCAATTTGTGCTGTGGTCTCTACGACCCTATACATATGTACACTGGTGTAATTTGATGCACTGTGTTTTAGTTTCTAATTGATATCGTCTTTTCTTCATTGCGGCAATGGATATCCTATCATTTACTTTTTGTGCCAGTATCTCATCAGACATCAACGCATACATGCAAAAAACCTGGTTGTGATTTTTGTTATGGATTCAATTATACACTTAATACAGGATATACTTCCATAAAATGAACTTTATACAGGATATTTTGTGCCATTTTCTCATTTCTTGATGCATTATCTGCTTCAAAATCTTTTGTCCTCTATGTCAAGAAGACTTATGTGGTGAACATGCAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAA</genome_strand>
        <mrna_strand>CCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401263" ref_strand="+" ref_description="SGN-E401263 [PPC-3-H23]">
      <seq>gtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataagcagaaggaatttggtgtgtctgacgatcactggattgttgctagaaatgaagaagaagctcgagatttggcttctaggaaatttttggggaagaagattgttgagatctctcaagatccagatgtgctggatacctggttttcgtctggtcttttcccattatctgtattggggtggccagataatactgcagatttcaaaacattttatccaacttcagttcttgaaaccggacatgatattctcttcttctgggttgcacgtatggtaatgttgggaataaagctgggaggtgatctaccattttcaaaggtttatttgcatccaatgatccgcgatgctcatgggcgtaagatgtcgaagtcgttgggaaatgttgttgatcctcttgaagtgattaatggaatcacacttgatggtcttcataaaagattaaaggagggtaacctagatgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcgcagtccgataagatcaatcttgatnattcagagagtggttgggtatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccacaaagatagttccttgtgacatgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="23739" stop="25681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24039" g_stop="24420" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24895" g_stop="25146" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="634" r_length="252" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.594" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25235" g_stop="25382" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="782" r_length="148" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E401263" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24039" e_stop="24420"/>
          <exon e_start="24895" e_stop="25146"/>
          <exon e_start="25235" e_stop="25382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTAGCAAACCTAATCCTCCCTAATATGGAAAACCTTTTTTCTTGTTGAGCTTTATGTTATAAGTGGATTTTGATTCTTTGAATCTATTTTAGGGATCATGTTCACCAAGATAGTTCTGGTTCCTTGATTTATGGTTTTTTACTCCTTAAAACTGACTCTGTGAGCTTGCTCACATTGCTGGTCCCAACCCGGATTAAGGAGGTGGGTTACTGAGGGTCAAATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAGGGGTAAGGCTGCATACATCTTACCCTCACTCCACTTGTGGGATTATACTGGATTTGTTGTTGTTGGTCTCAGTCCTTGACATTGAATATTAAGTAGAGATATTGGCTACGAAAGTTATATTTAGTAGTTCATTTTTTATCTACATGAAGTAGTTGTATAACTTGACCGTTCTGCTGTCATCTAACAAATCTATTCATTTTAAAATGATTTGTAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGAT-ATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTA</genome_strand>
        <mrna_strand>GTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTTGGGGAAGAAGATTGTTGAGATCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTTGCACGTATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTACCATTTTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTGTTGATCCTCTTGAAGTGATTAATGGAATCACACTTGATGGTCTTCATAAAAGATTAAAGGAGGGTAACCTAGATGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCGCAG........................................................................................TCCGATAAGATCAATCTTGATNATTCAGAGAGTGGTTGGGTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCC-ACAAAGATAGTTCCTTGTGACATGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247136" ref_strand="+" ref_description="SGN-E247136 [cLEF-46-I4]">
      <seq>tggttttcgtctggtcttttcccattatctgtattggggtggccagataatactgcagatttcaaaacattttatccaacttcagttcttgaaaccggacatgatattctcttcttctgggtcgcacgaatggtaatgttgggaataaagctgggaggtgatcttccattttcaaaggtttatttgcatccaatgatccgcgatgctcatgggcgtaagatgtcgaagtcgttgggaaatgttattgatccccttgaagttattaatggaatcacacttgatggtcttcataagagattaaaggagggtaacctagacgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcccagtccgataagatcaatcttgatattcagagagtggttggttatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttcctcatgaaatgccttttagctgccagtggatactctcagcacttaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="23944" stop="25714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24244" g_stop="24420" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24895" g_stop="25146" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="429" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25235" g_stop="25414" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="609" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E247136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24244" e_stop="24420"/>
          <exon e_start="24895" e_stop="25146"/>
          <exon e_start="25235" e_stop="25414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTAGCAAACCTAATCCTCCCTAATATGGAAAACCTTTTTTCTTGTTGAGCTTTATGTTATAAGTGGATTTTGATTCTTTGAATCTATTTTAGGGATCATGTTCACCAAGATAGTTCTGGTTCCTTGATTTATGGTTTTTTACTCCTTAAAACTGACTCTGTGAGCTTGCTCACATTGCTGGTCCCAACCCGGATTAAGGAGGTGGGTTACTGAGGGTCAAATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAGGGGTAAGGCTGCATACATCTTACCCTCACTCCACTTGTGGGATTATACTGGATTTGTTGTTGTTGGTCTCAGTCCTTGACATTGAATATTAAGTAGAGATATTGGCTACGAAAGTTATATTTAGTAGTTCATTTTTTATCTACATGAAGTAGTTGTATAACTTGACCGTTCTGCTGTCATCTAACAAATCTATTCATTTTAAAATGATTTGTAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAG</genome_strand>
        <mrna_strand>TGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334173" ref_strand="+" ref_description="SGN-E334173 [cTOD-21-O10]">
      <seq>gttttcgtctggtcttttcccattatctgtattggggtggccagataatactgcagatttcaaaacattttatccaacttcagttcttgaaaccggacatgatattctcttcttctgggtcgcacgaatggtaatgttgggaataaagctgggaggtgatcttccattttcaaaggtttatttgcatccaatgatccgcgatgctcatgggcgtaagatgtcgaagtcgttgggaaatgttattgatccccttgaagttattaatggaatcacacttgatggtcttcataagagattaaaggagggtaacctagacgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcccagtccgataagatcaatcttgatattcagagagtggttggttatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttcctcatgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattcttggtggcagtttcagttgtgtgatgtgtttatagaagtaatcaagcatacttcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="23946" stop="25841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24246" g_stop="24420" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24895" g_stop="25146" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="427" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25235" g_stop="25541" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="733" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E334173" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24246" e_stop="24420"/>
          <exon e_start="24895" e_stop="25146"/>
          <exon e_start="25235" e_stop="25541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTAGCAAACCTAATCCTCCCTAATATGGAAAACCTTTTTTCTTGTTGAGCTTTATGTTATAAGTGGATTTTGATTCTTTGAATCTATTTTAGGGATCATGTTCACCAAGATAGTTCTGGTTCCTTGATTTATGGTTTTTTACTCCTTAAAACTGACTCTGTGAGCTTGCTCACATTGCTGGTCCCAACCCGGATTAAGGAGGTGGGTTACTGAGGGTCAAATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAGGGGTAAGGCTGCATACATCTTACCCTCACTCCACTTGTGGGATTATACTGGATTTGTTGTTGTTGGTCTCAGTCCTTGACATTGAATATTAAGTAGAGATATTGGCTACGAAAGTTATATTTAGTAGTTCATTTTTTATCTACATGAAGTAGTTGTATAACTTGACCGTTCTGCTGTCATCTAACAAATCTATTCATTTTAAAATGATTTGTAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTG</genome_strand>
        <mrna_strand>GTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAG-CATACTTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598906" ref_strand="+" ref_description="SGN-E598906 [51882]">
      <seq>agataatactgcagattttaaaacattttatccaacttcagttcttgaaaccggacatgatattctcttcttctgggttgcacgtatggtaatgttgggaataaagctgggaggtgatctaccattttcaaaggtttatttgcatccaatgatccgcgatgctcatgggcgtaagatgtcgaagtcgttgggaaatgttgttgatcctcttgaagtgattaatggaatcacacttgatggtcttcataaaagattaaaggagggcaacctagatgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcgcagtccgataagatcaatcttgatattcagagagtggttgggtatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaaggatagttcctcgtgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaaccagcagtatattcttttttggcagtttcagttgtgtgatgtatttatagaaggtaatcaagccatacttcaaccgggtgataatccaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="23988" stop="25855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24288" g_stop="24420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24895" g_stop="25146" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="385" r_length="252" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.594" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25235" g_stop="25556" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="713" r_length="328" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E598906" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24288" e_stop="24420"/>
          <exon e_start="24895" e_stop="25146"/>
          <exon e_start="25235" e_stop="25556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTAGCAAACCTAATCCTCCCTAATATGGAAAACCTTTTTTCTTGTTGAGCTTTATGTTATAAGTGGATTTTGATTCTTTGAATCTATTTTAGGGATCATGTTCACCAAGATAGTTCTGGTTCCTTGATTTATGGTTTTTTACTCCTTAAAACTGACTCTGTGAGCTTGCTCACATTGCTGGTCCCAACCCGGATTAAGGAGGTGGGTTACTGAGGGTCAAATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAGGGGTAAGGCTGCATACATCTTACCCTCACTCCACTTGTGGGATTATACTGGATTTGTTGTTGTTGGTCTCAGTCCTTGACATTGAATATTAAGTAGAGATATTGGCTACGAAAGTTATATTTAGTAGTTCATTTTTTATCTACATGAAGTAGTTGTATAACTTGACCGTTCTGCTGTCATCTAACAAATCTATTCATTTTAAAATGATTTGTAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAA-GATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAA-CAGCAGTATATTC-TTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAA-GTAATCAAGCCATACTTC-A-CTGGTGATAATCCAGAAT</genome_strand>
        <mrna_strand>AGATAATACTGCAGATTTTAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTTGCACGTATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTACCATTTTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTGTTGATCCTCTTGAAGTGATTAATGGAATCACACTTGATGGTCTTCATAAAAGATTAAAGGAGGGCAACCTAGATGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCGCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGGTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGGATAGTTCCTCGTGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACCAGCAGTATATTCTTTTTTGGCAGTTTCAGTTGTGTGATGTATTTATAGAAGGTAATCAAGCCATACTTCAACCGGGTGATAATCCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400321" ref_strand="+" ref_description="SGN-E400321 [cSTC-8-E12]">
      <seq>catggacgtaagatgtcgaagtcgttgggaaatgttgttgatcctcttgaagtgattaatggaatcacacttgatggtcttcataaaagattaaaggagggcaacctagatgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcgcagtccgataagatcaatcttgatattcagagagtggttgggtatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttcctcgtgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattctttttggcagtttcagttgtgtgatgtatttatagaagttatcaagccatacttcaccggtgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="24625" stop="25849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24925" g_stop="25146" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.594" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25235" g_stop="25549" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="537" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E400321" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24925" e_stop="25146"/>
          <exon e_start="25235" e_stop="25549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAAT</genome_strand>
        <mrna_strand>CATGGACGTAAGATGTCGAAGTCGTTGGGAAATGTTGTTGATCCTCTTGAAGTGATTAATGGAATCACACTTGATGGTCTTCATAAAAGATTAAAGGAGGGCAACCTAGATGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCGCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGGTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCGTGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTTTTGGCAGTTTCAGTTGTGTGATGTATTTATAGAAGTTATCAAGCCATACTTCACCGGTGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439018" ref_strand="+" ref_description="SGN-E439018 [cSTA-10-J1]">
      <seq>ttcgatttgcccttgtctcatacactgcgcagtccgataagatcaatcttgatattcagagagtggttgggtatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttccttgtgacatgccttttagctgtcagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattcttggtggcagtttcagttgtgtgatgtatttatagaagtaatcaagccatactttaccggtgataatccagaatttgtatctgcaagaagatctgctcaggacaccttgtggctttgcttagatagcgggttgagattacttcatccatttatgccttttgtcaccgaagaattatggcagcgccttcctgctagcggggattctataaagaaagaatctatagtgataagtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="24815" stop="26019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25115" g_stop="25146" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.594" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25235" g_stop="25719" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="517" r_length="485" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E439018" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25115" e_stop="25146"/>
          <exon e_start="25235" e_stop="25719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTA</genome_strand>
        <mrna_strand>TTCGATTTGCCCTTGTCTCATACACTGCGCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGGTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTTGTGACATGCCTTTTAGCTGTCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTATTTATAGAAGTAATCAAGCCATACTTTACCGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAGCGGGTTGAGATTACTTCATCCATTTATGCCTTTTGTCACCGAAGAATTATGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403475" ref_strand="+" ref_description="SGN-E403475 [PPC-10-B8]">
      <seq>gatcaatcttgatattcagagagtggttgggtatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttcctcgtgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattctttttggcagtttcagttgtgtgatgtatttatagaagtaatcaagccatacttcaccggtgataatccagaatttgtatctgcaagaagatctgctcaggacaccttgtggctttgcttagataacggattgagattactccatccatttatgccttttgtcaccgaagaattatggcagcgccttcctgctaacgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="24943" stop="25982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25243" g_stop="25682" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E403475" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25243" e_stop="25682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGG</genome_strand>
        <mrna_strand>GATCAATCTTGATATTCAGAGAGTGGTTGGGTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCGTGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTTTTGGCAGTTTCAGTTGTGTGATGTATTTATAGAAGTAATCAAGCCATACTTCACCGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGATTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTATGGCAGCGCCTTCCTGCTAACGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346686" ref_strand="+" ref_description="SGN-E346686 [cTOF-28-K12]">
      <seq>atagttcctcatgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattcttggtggcagtttcagttgtgtgatgtgtttatagaagtaatcaagccatacttcactggtgataatccagaatttgtatctgcaagaagatctgctcaggacaccttgtggctttgcttagataacgggttgagattactccatccatttatgccttttgtcaccgaagaattgtggcagcgccttcctgctagcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatcttttgaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25058" stop="28457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25358" g_stop="25735" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="485" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="585" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28157" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="642" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E346686" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25358" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAA</genome_strand>
        <mrna_strand>ATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345549" ref_strand="+" ref_description="SGN-E345549 [cTOF-18-L17]">
      <seq>agcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattcttggtggcagtttcagttgtgtgatgtgtttatagaagtaatcaagccatacttcactggtgataatccagaatttgtatctgcaagaagatctgctcaggacaccttgtggctttgcttagataacgggttgagattactccatccatttatgccttttgtcaccgaagaattgtggcagcgccttcctgctagcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25102" stop="28474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25402" g_stop="25735" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="441" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28174" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="615" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E345549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25402" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCT</genome_strand>
        <mrna_strand>AGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613082" ref_strand="+" ref_description="SGN-E613082 [62852]">
      <seq>ccagaatttgtatctgcaagaagatctgctcaggacaccttggtggctttgcttagataacgggttgagattacttcatccatttatgccttttgtcaccgaagaattatggcagcgccttcctgctagcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaagctgagatggaaaaggtgtcatccattgttaaaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatattgtggagatcataaaaagccgcgaacttgagatttctactttaactacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatctatcacaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25250" stop="28472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25550" g_stop="25735" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="294" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="394" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28172" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E613082" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25550" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTT-GTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTT</genome_strand>
        <mrna_strand>CCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGGTGGCTTTGCTTAGATAACGGGTTGAGATTACTTCATCCATTTATGCCTTTTGTCACCGAAGAATTATGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAGCTGAGATGGAAAAGGTGTCATCCATTGTTAAAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATATTGTGGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAACTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCTATCACAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317155" ref_strand="-" ref_description="SGN-E317155 [cTOA-27-N24]">
      <seq>ttactccatccatttatgccttttgtcaccgaagaattgtggcagcgctttcntgctagcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25319" stop="29920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25619" g_stop="25735" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="224" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="324" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28249" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="473" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29314" g_stop="29620" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="780" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E317155" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25619" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28249"/>
          <exon e_start="29314" e_stop="29620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGA</genome_strand>
        <mrna_strand>TTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCTTTCNTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588450" ref_strand="-" ref_description="SGN-E588450 [42003]">
      <seq>ctcccatccattttatgccttttgtcaccgaagaaataatgncagcgccttcttgctancggggattctataaagaaagaatctatagttataagtgattatccttcatatgtagagagctggaataatgataatgtggaagctgagatgggaaaggtgtcatccattgttaaaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatattgtggagatcataaaaagccgcgaacttgagatttctactttaaccacactgtcatctttgaaggtctcaactgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatctatcacagtttttctggaggataaggggactatcgttaaccgtgaggcagaagttgaaaggctcaaaaagaagagagaggagacgaggaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgtccatgaagaaaatacactgaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatatcgagcgtctcatacgtcaaatggaggtactataattggagtaattcaattcgctatcgctcgtaatgatcggactatattttcttgctggtggggatgggaatagagtttttggtttgatgtgacaaagtgtcttacatatgtctagtttctagtagaaaaaatatgtccaactttatccattattattagtattgtgaatttatatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25322" stop="30258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25622" g_stop="25735" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="224" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="324" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28249" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="473" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29314" g_stop="29484" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="644" r_length="171" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29485" i_stop="29771" i_length="287">
            <donor d_prob="0.850" d_score="0.96"/>
            <acceptor a_prob="0.209" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29772" g_stop="29958" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="817" r_length="173" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E588450" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588450" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25622" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28249"/>
          <exon e_start="29314" e_stop="29484"/>
          <exon e_start="29772" e_stop="29958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-CCATCCATTT-ATGCCTTTTGTCACCGAAG-AATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAAATTGCCAGTCTAATGTTTTCTGATACATTGATATGTTGTAAGTAGGCCATTTGATATTACGATGGCTTGGTTTCGCTATCGCTCGTAATTATATTTTTCTTGTTGGATGAGGGATGGGGATAGAGTTTTTGATTTGATGTGACAAAGTGTCTTACATATGTCTACTTTCTAGTAGAAAAAATATCTCCAACTTTTTCAATTATTATTAGTATATTGTGAAATTATATACACC</genome_strand>
        <mrna_strand>CTCCCATCCATTTTATGCCTTTTGTCACCGAAGAAATAATGNCAGCGCCTTCTTGCTANCGGGGATTCTATAAAGAAAGAATCTATAGTTATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAGCTGAGATGGGAAAGGTGTCATCCATTGTTAAAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATATTGTGGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAACCACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAACTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCTATCACAGTTTTTCTGGAGGATAAGGGGACTATCGTTAACCGTGAGGCAGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTCCATGAAGAAAATACACTGAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATCGAGCGTCTCATACGTCAAATGGAGGTACTATAATTGGA...............................................................................................................................................................................................................................................................................................G-TAATTCA-ATT-CGCT---ATCG-CTCG-TAATGATCG-GACTATA-TTTTCTTGCTGG-TG-GGGATGGGAATAGAGTTTTTGGTTTGATGTGACAAAGTGTCTTACATATGTCTAGTTTCTAGTAGAAAAAATATGTCCAACTTTATCCATTATTATTAG--TATTGTGAATTTATATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367834" ref_strand="+" ref_description="SGN-E367834 [TUS-22-I3]">
      <seq>agcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatctttttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25376" stop="29848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25676" g_stop="25735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="167" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28249" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="416" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29314" g_stop="29548" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="651" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E367834" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25676" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28249"/>
          <exon e_start="29314" e_stop="29548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTT</genome_strand>
        <mrna_strand>AGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239810" ref_strand="+" ref_description="SGN-E239810 [cLED-29-I16]">
      <seq>tgcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25377" stop="28553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25676" g_stop="25735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="167" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28249" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="416" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E239810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25676" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA</genome_strand>
        <mrna_strand>TGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237526" ref_strand="+" ref_description="SGN-E237526 [cLED-19-D3]">
      <seq>agcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25376" stop="28496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25676" g_stop="25735" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="167" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28196" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E237526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25676" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATT</genome_strand>
        <mrna_strand>AGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347856" ref_strand="+" ref_description="SGN-E347856 [cTOF-31-A15]">
      <seq>tataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacgattcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="25387" stop="29928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25687" g_stop="25735" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26273" g_stop="26379" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="156" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27277" g_stop="27376" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="256" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28101" g_stop="28249" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="405" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29314" g_stop="29628" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="720" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E347856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25687" e_stop="25735"/>
          <exon e_start="26273" e_stop="26379"/>
          <exon e_start="27277" e_stop="27376"/>
          <exon e_start="28101" e_stop="28249"/>
          <exon e_start="29314" e_stop="29628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAA</genome_strand>
        <mrna_strand>TATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608816" ref_strand="+" ref_description="SGN-E608816 [24811]">
      <seq>gaagcgtttgtgctttgccggacaaatgactattgtggattatcataaaaagccgcgaacttgagatttctactttaactacactgtcatctttgaaggtctcaactgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatctatcacagttttctctggacggataaggggactatcgtttaaccctgaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="26981" stop="28508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27281" g_stop="27376" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28101" g_stop="28208" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="209" r_length="111" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E608816" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27281" e_stop="27376"/>
          <exon e_start="28101" e_stop="28208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGTTTGTGCTTTGCCGGACAAATGA-TACTGTTGA-GATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTT-TCTCGA-GGATAAGGGGACTATC-ATTAACCCTGAGGCT</genome_strand>
        <mrna_strand>GAAGCGTTTGTGCTTTGCCGGACAAATGACTATTGTGGATTATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAACTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAACTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCTATCACAGTTTTCTCTGGACGGATAAGGGGACTATCGTTTAACCCTGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716446" ref_strand="+" ref_description="SGN-E716446 [FB17AC11]">
      <seq>ctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacgattcttgaaatttttgagataacaaggtgatttctgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="27803" stop="29958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28103" g_stop="28249" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29314" g_stop="29657" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="491" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="509"/>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E716446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28103" e_stop="28249"/>
          <exon e_start="29314" e_stop="29657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTA</genome_strand>
        <mrna_strand>CTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218033" ref_strand="+" ref_description="SGN-E218033 [cLEL-23-N20](-)">
      <seq>gagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacgattcttgaaatttttgagataacaaggtgatttctgtaatttgtgatatgaataggcttaatattagcttcctcaatttgctaatattttgcccttgaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="29010" stop="30027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29314" g_stop="29726" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="419" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="432"/>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E218033" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29314" e_stop="29726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAA</genome_strand>
        <mrna_strand>GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218346" ref_strand="+" ref_description="SGN-E218346 [cLEL-18-C10](-)">
      <seq>aagttcgtgctaacgttcccgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacgattcttgaaatttttgagataacaaggtgatttctgtaatttgtgatatgaataggcttaatattagcaaactcaatttgctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="29064" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29364" g_stop="29707" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E218346" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29364" e_stop="29707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATT</genome_strand>
        <mrna_strand>AAGTTCGTGCTAACGTTCCCGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCAAACTCAATTTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568421" ref_strand="+" ref_description="SGN-E568421 [12701]">
      <seq>ttttgaaattatacagacccttttcttctcttatctccctctttaaagatcttaaaggtttgagcaaagccaagaaaaaaaaaaaaaagtctttataagttcttggttttttacttagtgtttttcaagattcaaacttgtgtcttttattgtgtttttgttcctttggaacaatctgaaaaagaaaaaaaaaaaattgtgagattaagttcttttatctgtttgtatttgaacaaaatttaaagctttttttgtgagttagctttgttttctagctccaacaaagctaaaacaaaaacccattttgttaacaaatgatgtctggagatttgttttcaattcatcaacaacaacaacaagtactagttgaacaaaacctaaccctaaagctaattcttcttctaagaaaagaagaaatcttccaggtacaccagatccagatgctgaagttattgcaatatcaccaaaaactcatggtacaaacagattcatatgtgaaatctgaacaaaggtttcagagggaccaaaaatttgcaatttccatagaagacgacataatcttccatggaagttaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="36883" stop="38464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37183" g_stop="37630" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37631" i_stop="38016" i_length="386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38017" g_stop="38164" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="579" r_length="145" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E568421" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37183" e_stop="37630"/>
          <exon e_start="38017" e_stop="38164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAATTATACAGACCCCTTTTCTTCTCTTATCTCCCTCTTTAAAGATCTTAAAAACTTTGAGCAAAGCCAAGAAAAAAAAAATGTCTTTATAAGTTTTAAGTTCTT-GTTTTTTACTTAGTGTTTTTCAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAA-AAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAGGTAAATTTAGAACTATATGTTCATTTAACTAGCGTTTGGTCATAGATTTTTTTTCGAGTAGTATTTTCAAATTTACCACCTTGTGAACTATGAAACACTCCTTCATAAACTTAGAGTTTCAACTTCAAAACCTATGGCCGAACGAAGAGCTTAGTACAATAGTACAAAAATATTCACTTTTGCATGTCAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTATGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTTTAACTTTGTTGTTATGTTAAACAGATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATC-AAAACTTGCAA-CTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCA</genome_strand>
        <mrna_strand>TTTTGAAATTATACAGA-CCCTTTTCTTCTCTTATCTCCCTCTTTAAAGATCTT-AAAGGTTTGAGCAAAGCCAAGAAAAAAAAAAAAAA-GTCT---TTATAAGTTCTTGGTTTTTTACTTAGTGTTTTTCAAGATTCAAAC-TT-GTGTCTTTTATTGTG-TTTTTGTTCCTTTGGAACAATCTGAAAAAGAAAAAAAAAAAATTGTGAG-ATTAAGTTC-TTTTATCTGTTTGTATTTGAACAAAATTTAAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAA-CCCATTTTGTTAACAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACA--A-CAAGTACTAGTTGAACAAAA-CCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG..................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATGCTGAAGTTATTGCAATATCACC-AAAA-ACTCATGG-TACAAACAGATTCATATGTGAAATCTG-AACAAAGG-TTTCAGAGGGACCAAAAATTTGCAATTTCCATAGAAGACGACATAATCTTCCATGGAAGTTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568387" ref_strand="+" ref_description="SGN-E568387 [12662]">
      <seq>ttttgaaattatacagacccttttcttctcttatctccctctttaaagatcttaaaagtttgagcaaaggcaagaaaaaaaaaaaaaagtctttataagttcttgttttttacttagtgtttttcaagattcaaacttgtgtcttttattgtgtttttgttcctttggaacaatgtgaaaaagaaaaaaaaaaaacttgtgagattaagttctttcatctgtctgtatttgaaaaaatttaaagctttttttgtgagttagctttgttttctagctccaacaaagctaaaacaaaaaccccattttgttacacatgatgtctggagatttgtctccaattcatcaacaacaacaacaagtactagttgaacaaaaccctaaccctaaagctaattcttcttctaagaaaagaagaaatcttccaggtacaccagatccagatgctgaagttattgcaatatcacccaaaaaactcatggctacaaacagattcatatgtgaactctgcaccaaaggttttcagagggaccacaacttgcaagttcatagaagaggacataatcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="36883" stop="38450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37183" g_stop="37630" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37631" i_stop="38016" i_length="386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38017" g_stop="38150" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="568" r_length="134" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E568387" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37183" e_stop="37630"/>
          <exon e_start="38017" e_stop="38150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAATTATACAGACCCCTTTTCTTCTCTTATCTCCCTCTTTAAAGATCTTAAAAACTTTGAGCAAAGCCAAGAAAAAAAAAATGTCTTTATAAGTTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAA-TAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAGGTAAATTTAGAACTATATGTTCATTTAACTAGCGTTTGGTCATAGATTTTTTTTCGAGTAGTATTTTCAAATTTACCACCTTGTGAACTATGAAACACTCCTTCATAAACTTAGAGTTTCAACTTCAAAACCTATGGCCGAACGAAGAGCTTAGTACAATAGTACAAAAATATTCACTTTTGCATGTCAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTATGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTTTAACTTTGTTGTTATGTTAAACAGATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCA</genome_strand>
        <mrna_strand>TTTTGAAATTATACAGA-CCCTTTTCTTCTCTTATCTCCCTCTTTAAAGATCTT-AAAAGTTTGAGCAAAGGCAAGAAAAAAAAAAAAAA-GTCT---TTATAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAGATTCAAAC-TT-GTGTCTTTTATTGTG-TTTTTGTTCCTTTGGAACAATGTGAAAAAGAAAAAAAAAAAACTTGTGAG-ATTAAGTTC-TTTCATCTGTCTGTATTTG-AAAAAATTTAAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTGTTACACATGATGTCTGGAGATTTGTCTCCAATTCATCAACAACAACA--A-CAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG..................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATGCTGAAGTTATTGCAATATCACCCAAAAAACTCATGGCTACAAACAGATTCATATGTGAACTCTGCACCAAAGGTTTTCAGAGGGACCACAACTTGCAAGTTCATAGAAGAGGACATAATCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312937" ref_strand="+" ref_description="SGN-E312937 [cTOA-14-E13]">
      <seq>tcttatctccctctttaaagatcttaaaaactttgagcaaagccaagaaaaaaaaaatgtctttataagttttaagttcttgttttttacttagtgtttttcaagattcaaactttagtgtcttttattgtgttttttgttcttttggaacaatcttaaaaataaaaataaaaacttgtgagttttaagttctttttatctgtttgtatttgaaaaaaaaactaagctttttttgtgagttagctttgttttctagctccaacaaagctaaaacaaaaaccccattttcttaaaaatgatgtctggagatttgttttcaattcatcaacaacaacatcagcaagtactagttgaacaaaaccctaaccctaaagctaattcttcttctaagaaaagaagaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="36912" stop="37916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37212" g_stop="37616" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E312937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37212" e_stop="37616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATCTCCCTCTTTAAAGATCTTAAAAACTTTGAGCAAAGCCAAGAAAAAAAAAATGTCTTTATAAGTTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCT</genome_strand>
        <mrna_strand>TCTTATCTCCCTCTTTAAAGATCTTAAAAACTTTGAGCAAAGCCAAGAAAAAAAAAATGTCTTTATAAGTTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709128" ref_strand="+" ref_description="SGN-E709128 [FA42DB03]">
      <seq>ccgtaagttcttgttttttacttagtgtttttcaaagattcaaacttttagtgtcttttattgtgttttttgttcttttggaacaatcttaaaaataaaaataaaaacttgtgagttttaagttctttttatctgtttgtatttgaaaaaaaaattaagctttttttgtgagttagctttgttttctagctccaacaaagctaaaacaaaaatcccattttcttaaaaatgatgtctggagatttgttttcaattcatcaacaacaacatcagcaagtactagttgaacaaaaccctaaccctaaagctaattcttcttctaagaaaagaagaaatcttccaggtacaccagatccagatgctgaagtgattgcaatatcaccaaaaacactgatggctacaaacagattcatatgtgaaatctgcaacaaaggttttcagagggatcaaaacttgcaactccatagaagaggacataatcttccatggaagttgaagcaaaggaaccaaacaacaaatagttaagaagaaagtttacatatgtccagaaaatagttgtgtacatcatgatccatcaagagcacttggtgaccttactggtataaagaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="36984" stop="38579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37281" g_stop="37630" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37631" i_stop="38016" i_length="386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38017" g_stop="38279" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="616" r_length="264" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E709128" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37281" e_stop="37630"/>
          <exon e_start="38017" e_stop="38279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTC-AAGATTCAAAC-TTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAGGTAAATTTAGAACTATATGTTCATTTAACTAGCGTTTGGTCATAGATTTTTTTTCGAGTAGTATTTTCAAATTTACCACCTTGTGAACTATGAAACACTCCTTCATAAACTTAGAGTTTCAACTTCAAAACCTATGGCCGAACGAAGAGCTTAGTACAATAGTACAAAAATATTCACTTTTGCATGTCAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTATGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTTTAACTTTGTTGTTATGTTAAACAGATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAA-CAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTT</genome_strand>
        <mrna_strand>CCGTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAAGATTCAAACTTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAATTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAATCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG..................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACCAAACAACAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAATAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346528" ref_strand="+" ref_description="SGN-E346528 [cTOF-28-I19]">
      <seq>ttagctttgttttctagctccacaaagctaaaacaaaaaccccattttcttaaaaatgatgtctggagatttgttttcaattcatcaacaacaacatcagcaagtactagttgaacaaaaccctaaccctaaagctaattcttcttctaagaaaagaagaaatcttccaggtacaccagatccagatgctgaagtgattgcaatatcaccaaaaacactgatggctacaaacagattcatatgtgaaatctgcaacaaaggttttcagagggatcaaaacttgcaactccatagaagaggacataatcttccatggaagttgaagcaaaggaacaaacaagaaatagttaagaagaaagtttacatatgtccagaaaagagttgtgtacatcatgatccatcaagagcacttggtgaccttactggtataaagaagcattttagcagaaaacatggtgagaaaaaatggaagtgtgaaaagtgttcaaagaaatatgcagttcaatctgattggaaagctcatactaagaacttgtggtactagagagtataaatgntgactgtggaacactcttttccaggaaagatagtttcattacccatagagctttctgtgatgctttagctgaagagagtgcaagaatcactactaccaacaatttgaacttcaaccagcaacacaacaacctgtttggagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="37151" stop="39150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37451" g_stop="37630" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37631" i_stop="38016" i_length="386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38017" g_stop="38416" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="581" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38417" i_stop="38730" i_length="314">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38731" g_stop="38850" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="701" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E346528" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37451" e_stop="37630"/>
          <exon e_start="38017" e_stop="38416"/>
          <exon e_start="38731" e_stop="38850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAGGTAAATTTAGAACTATATGTTCATTTAACTAGCGTTTGGTCATAGATTTTTTTTCGAGTAGTATTTTCAAATTTACCACCTTGTGAACTATGAAACACTCCTTCATAAACTTAGAGTTTCAACTTCAAAACCTATGGCCGAACGAAGAGCTTAGTACAATAGTACAAAAATATTCACTTTTGCATGTCAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTATGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTTTAACTTTGTTGTTATGTTAAACAGATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAG-ACTTGTGGTACTAGAGAGTATAAATG-TGACTGTGGAACACTCTTTTCCAGGTAATTAATTTTGGTACCATCTAGTAATAATATTATGTTCTTGTTTTAGGAATATTTGTTTCAAAACTGAATTAAATGCTCATTCATTCATGGAAAAGTTCAATTTATTGCTCCCTCCTGACTACAAACTACCCACCATTAAGCTCCCGTTTGGTCATAAATTTTGATAAACTTGTGTTTAGGCATGCACTAGTCAGTTTTTGAGCCGACTAGCTAGCATCCCTGCCCTCTTAAAATCTATGACCAAACGCTAGTTAAATTGTGTATGTTATTGTGCTTTAGTTTAATGATGAGTTCTTTTTTCTTGTACACAGGAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTG-TTGGAGTTTC</genome_strand>
        <mrna_strand>TTAGCTTTGTTTTCTAGCTCC-ACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG..................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGAACTTGTGGTACTAGAGAGTATAAATGNTGACTGTGGAACACTCTTTTCCAG..........................................................................................................................................................................................................................................................................................................................GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAAC-ACAACAACCTGTTTGGAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430854" ref_strand="+" ref_description="SGN-E430854 [STM-54-M24]">
      <seq>gaagttattgcaatatcacccaaaacactcatggcaacaaacagattcatatgtgaaatctgcaacaaaggttttcagagggaccaaaacttgcaacttcatagaagaggacataatcttccatggaagttaaagcaaaggaacaaacaagaaatagttaagaagaaagtttacatatgtccagaaaagacttgtgtacatcatgatccttcaagagcacttggtgaccttactggtataaagaagcattttagcagaaaacatggtgagaaaaaatggaaatgtgaaaagtgttcaaagaaatatgcagttcaatctgattggaaagctcatactaagacttgtggtactagagagtataaatgtgactgtggaacactcttttccaggaaagatagtttcattacccatagagctttctgtgatgctttagctgaagagagtgcaagaatcacttcagttggaactactcccaacaatttgaacttcaaccagcaacaacaacaacctgttggaatttcccaaattgggacaagttttgtccaagattttacaagtatgacaactgtgaatcctctacatcagcatcagcaaaaaccaagattatcactttggctaaatcaagctaataacaacatgtcatcaccaagttcaaatctttttggcttaccagatcatcatatggtccaaatcccatctccaaatatgtttggtactgcatcatcaattggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="37728" stop="39346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38028" g_stop="38416" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38417" i_stop="38730" i_length="314">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38731" g_stop="39046" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="717" r_length="328" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E430854" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38028" e_stop="38416"/>
          <exon e_start="38731" e_stop="39046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGTAATTAATTTTGGTACCATCTAGTAATAATATTATGTTCTTGTTTTAGGAATATTTGTTTCAAAACTGAATTAAATGCTCATTCATTCATGGAAAAGTTCAATTTATTGCTCCCTCCTGACTACAAACTACCCACCATTAAGCTCCCGTTTGGTCATAAATTTTGATAAACTTGTGTTTAGGCATGCACTAGTCAGTTTTTGAGCCGACTAGCTAGCATCCCTGCCCTCTTAAAATCTATGACCAAACGCTAGTTAAATTGTGTATGTTATTGTGCTTTAGTTTAATGATGAGTTCTTTTTTCTTGTACACAGGAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCA---C---T---ACTA---CCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTACT</genome_strand>
        <mrna_strand>GAAGTTATTGCAATATCACCCAAAACACTCATGGCAACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGACCAAAACTTGCAACTTCATAGAAGAGGACATAATCTTCCATGGAAGTTAAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGACTTGTGTACATCATGATCCTTCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG..........................................................................................................................................................................................................................................................................................................................GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTTCAGTTGGAACTACTCCCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAATTTCCCAAATTGGGACAAGTTTTGTCCAAGATTTTACAAGTATGACAACTGTGAATCCTCTACATCAGCATCAGCAAAAACCAAGATTATCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACCAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCCAAATATGTTTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462675" ref_strand="+" ref_description="SGN-E462675 [cPRO-12-K6]">
      <seq>gaagttattgcaatatcacccaaaacactcatggcaacaaacagattcatatgtgaaatctgcaacaaaggttttcagagggaccaaaacttgcaacttcatagaagaggacataatcttccatggaagttaaagcaaaggaacaaacaagaaatagttaagaagaaagtttacatatgtccagaaaagacttgtgtacatcatgatccttcaagagcacttggtgaccttactggtataaagaagcattttagcagaaaacatggtgagaaaaaatggaaatgtgaaaagtgttcaaagaaatatgcagttcaatctgattggaaagctcatactaagacttgtggtactagagagtataaatgtgactgtggaacactcttttccaggaaagatagtttcattacccatagagctttctgtgatgctttagctgaagagagtgcaagaatcacttcagttggaactactcccaacaatttgaacttcaaccagcaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="37728" stop="39131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38028" g_stop="38416" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38417" i_stop="38730" i_length="314">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38731" g_stop="38797" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="456" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E462675" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38028" e_stop="38416"/>
          <exon e_start="38731" e_stop="38797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGTAATTAATTTTGGTACCATCTAGTAATAATATTATGTTCTTGTTTTAGGAATATTTGTTTCAAAACTGAATTAAATGCTCATTCATTCATGGAAAAGTTCAATTTATTGCTCCCTCCTGACTACAAACTACCCACCATTAAGCTCCCGTTTGGTCATAAATTTTGATAAACTTGTGTTTAGGCATGCACTAGTCAGTTTTTGAGCCGACTAGCTAGCATCCCTGCCCTCTTAAAATCTATGACCAAACGCTAGTTAAATTGTGTATGTTATTGTGCTTTAGTTTAATGATGAGTTCTTTTTTCTTGTACACAGGAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACT</genome_strand>
        <mrna_strand>GAAGTTATTGCAATATCACCCAAAACACTCATGGCAACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGACCAAAACTTGCAACTTCATAGAAGAGGACATAATCTTCCATGGAAGTTAAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGACTTGTGTACATCATGATCCTTCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG..........................................................................................................................................................................................................................................................................................................................GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238125" ref_strand="+" ref_description="SGN-E238125 [cLED-22-B12]">
      <seq>aaaaaatggaagtgtgaaaagtgttcaaagaaatatgcagttcaatctgattggaaagctcatactaagacttgtggtactagagagtataaatgtgactgtggaacactcttttccaggaaagatagtttcattacccatagagctttctgtgatgctttagctgaagagagtgcaagaatcactactaccaacaatttgaacttcaaccagcaacaacaacaacctgttggagtttcacaaattgggacaagttttgctcaagattttacaagtatgacaactgtgaatccactacatcagcatcagcaaaaaccaagattgtcactttggctaaatcaagctaataacaacatgtcatcacaaagttcaaatctttttggcttaccagatcatcatatggtccaaatcccatctcataacatgtttggtacttaaccaaatacctaaccccacccccaccaccaccaccaccaccaacaccaacactaacactaacacccctgcaaccccaaacccccctataccaatgtcagcaacagcccttctacaaaaagcagcacaaatggggtcaacaaaaagcactccaaactacttttccacacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="37998" stop="39520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38298" g_stop="38416" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38417" i_stop="38730" i_length="314">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38731" g_stop="39220" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="609" r_length="490" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E238125" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38298" e_stop="38416"/>
          <exon e_start="38731" e_stop="39220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGTAATTAATTTTGGTACCATCTAGTAATAATATTATGTTCTTGTTTTAGGAATATTTGTTTCAAAACTGAATTAAATGCTCATTCATTCATGGAAAAGTTCAATTTATTGCTCCCTCCTGACTACAAACTACCCACCATTAAGCTCCCGTTTGGTCATAAATTTTGATAAACTTGTGTTTAGGCATGCACTAGTCAGTTTTTGAGCCGACTAGCTAGCATCCCTGCCCTCTTAAAATCTATGACCAAACGCTAGTTAAATTGTGTATGTTATTGTGCTTTAGTTTAATGATGAGTTCTTTTTTCTTGTACACAGGAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTAC-TAACCAAATACTCAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCCAACACATTT</genome_strand>
        <mrna_strand>AAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG..........................................................................................................................................................................................................................................................................................................................GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTACTTAACCAAATACCTAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCC-ACACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426110" ref_strand="+" ref_description="SGN-E426110 [STM-46-E19]">
      <seq>ccaaatcccatctccaacaccaacacccctgcaaccccaaatcccccaataccaatgtcagcaacagcccttctacaaaaagcagcacaaatggggtcaacaaaaagcacaccaaattacttttcgaacacatttggagtaatgaactcatcatcttctccttcatcaaacaacacaacacaaatcttcaacaacaatgaaattcatcaagcttttgcaaaacaaacagaggattacaatcaaacagagaatatactcatcaatgggtgtccaaatatgaattcatctgttcattctaaagcaatcaatttggatcaggcattattacaaacaggtggcatgcataatcaaactgttcatttcaacttgcataatagtcttactagagattttttaggcatggggaatgaagggggtcagccatttttgccacaagaattggcaaagtttgcttcaatgaatgcagctatggggttaagccattacagtactggtcactagtcctagcaagtttttttttttttttttttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="38787" stop="39918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39086" g_stop="39621" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E426110" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39086" e_stop="39621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCCAACACATTTGGAGTAATGCACTCATCATCTTCTCCTTCATCAAACAACACAACACAAATCTTCAACAACAATGAAATTCATCAAGCTTTTGCAAAACAAACAGAGGATTACAATCAAACAGAGAATATACTCATCAATGGGTGTCCAAATATGAATTCATCTGTTAATTCTAAAGCAATCAATTTGGATCAGGCATTATTACAAACAGGTGGCATGCATAATCAAAATGTTCATTTCAACTTGCATAATAGTCTTACTAGAGATTTTTTAGGCATGGGAAATGAAGGGGGTCAGCCATTTTTGCCACAAGAATTAGCAAAGTTTGCTTCAATCAATTCAGCTATGGGGTTAAGCCATTACAGTACTGGTCACTAGTCCTACCAAGTTTTTTTTTTTTTTTTTGTATTAAA</genome_strand>
        <mrna_strand>CCAAATCCCATCTCCAACACCAACACCCCTGCAACCCCAAATCCCCCAATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACACCAAATTACTTTTCGAACACATTTGGAGTAATGAACTCATCATCTTCTCCTTCATCAAACAACACAACACAAATCTTCAACAACAATGAAATTCATCAAGCTTTTGCAAAACAAACAGAGGATTACAATCAAACAGAGAATATACTCATCAATGGGTGTCCAAATATGAATTCATCTGTTCATTCTAAAGCAATCAATTTGGATCAGGCATTATTACAAACAGGTGGCATGCATAATCAAACTGTTCATTTCAACTTGCATAATAGTCTTACTAGAGATTTTTTAGGCATGGGGAATGAAGGGGGTCAGCCATTTTTGCCACAAGAATTGGCAAAGTTTGCTTCAATGAATGCAGCTATGGGGTTAAGCCATTACAGTACTGGTCACTAGTCCTAGCAAGTTTTTTTTTTTTTTTTTTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430855" ref_strand="+" ref_description="SGN-E430855 [STM-54-M24]">
      <seq>aaaaacaaatttggaagataaggttcaaatttcaccttattgtatttttgtaatacaaaaaaaaaaaaaaaacttgctaggactagtgaccagtactgtaatggcttaaccccatagctgcattcattgaagcaaactttgccaattcttgtggcaaaaatggctgacccccttcattccccatgcctaaaaaatctctagtaagactattatgcaagttgaaatgaacagtttgattatgcatgccacctgtttgtaacaatgcctgatccaaattgattgctttagaattaacagataaattcatatttggacacccattgatgagtatattctctgtttgattgtaatcctctgtttgttttgcaaaagcttgatgaatttcattgttgttgaagatttgtgttgtgttgtttgatgaaggagaagatgatgagtgcattactccaaatgtgttggaaaagtaatttggagtgctttttgttgaccccatttgtgctgctttttgtagaagggctgttgctgacataggtattgggggatttgaggttgcaggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="-" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="39956" stop="38810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39653" g_stop="39110" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="559" r_length="542" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="-" ref_id="SGN-E430855" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39653" e_stop="39110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATTCAAATTTTACATTATTCTATTTTTTTTAATACAAAAAAAAAAAAAAAAACTTGGTAGGACTAGTGACCAGTACTGTAATGGCTTAACCCCATAGCTGAATTGATTGAAGCAAACTTTGCTAATTCTTGTGGCAAAAATGGCTGACCCCCTTCATTTCCCATGCCTAAAAAATCTCTAGTAAGACTATTATGCAAGTTGAAATGAACATTTTGATTATGCATGCCACCTGTTTGTAATAATGCCTGATCCAAATTGATTGCTTTAGAATTAACAGATGAATTCATATTTGGACACCCATTGATGAGTATATTCTCTGTTTGATTGTAATCCTCTGTTTGTTTTGCAAAAGCTTGATGAATTTCATTGTTGTTGAAGATTTGTGTTGTGTTGTTTGATGAAGGAGAAGATGATGAGTGCATTACTCCAAATGTGTTGGAAAAGTAGTTTGGAGTGCTTTTTGTTGACCCCATTTGTGCTGCTTTTTGTAGAAGGGCTGTTGCTGACATTGGTATAGGGGGGTTTGGGGTTGCAGGGGT</genome_strand>
        <mrna_strand>ATAAGGTTCAAATTTCACCTTATTGTAT-TTTTGTAATAC-AAAAAAAAAAAAAAAACTTGCTAGGACTAGTGACCAGTACTGTAATGGCTTAACCCCATAGCTGCATTCATTGAAGCAAACTTTGCCAATTCTTGTGGCAAAAATGGCTGACCCCCTTCATTCCCCATGCCTAAAAAATCTCTAGTAAGACTATTATGCAAGTTGAAATGAACAGTTTGATTATGCATGCCACCTGTTTGTAACAATGCCTGATCCAAATTGATTGCTTTAGAATTAACAGATAAATTCATATTTGGACACCCATTGATGAGTATATTCTCTGTTTGATTGTAATCCTCTGTTTGTTTTGCAAAAGCTTGATGAATTTCATTGTTGTTGAAGATTTGTGTTGTGTTGTTTGATGAAGGAGAAGATGATGAGTGCATTACTCCAAATGTGTTGGAAAAGTAATTTGGAGTGCTTTTTGTTGACCCCATTTGTGCTGCTTTTTGTAGAAGGGCTGTTGCTGACATAGGTATTGGGGGATTTGAGGTTGCAGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456086" ref_strand="+" ref_description="SGN-E456086 [cSTS-28-B13]">
      <seq>cccaaattaccttttcgaacaccactttggagtaatgaactcatcatcttctccttcattcaaacaacacaacacaaatcttcaacaacaatgaaattcatcaagcttttgcaaaacaaacagaggattacaatcaaacagagaatatacctcatcaatgggtgtccaaatatgaattcatctgttcattctaaagcaatcaatttggatcaggcattattacaaacaggtggcatgcataatcaaactgttcatttcaacttgcataatagtcttactagagattttttaggcatggggaatgaagggggtcagccatttttgccacaagaattggcaaagtttgcttcaatgaatgcagctatggggttaagccattacagtactggtcactagtcctagcaagtttttttttttttttttttttttgtattacaaaaatacaataatgtaaaatttgaaccttatcttattagcaagctggcattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="38897" stop="39980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39196" g_stop="39680" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E456086" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39196" e_stop="39680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAACTA-CTTTTCCAACA-CA-TTTGGAGTAATGCACTCATCATCTTCTCCTTCA-TCAAACAACACAACACAAATCTTCAACAACAATGAAATTCATCAAGCTTTTGCAAAACAAACAGAGGATTACAATCAAACAGAGAATATA-CTCATCAATGGGTGTCCAAATATGAATTCATCTGTTAATTCTAAAGCAATCAATTTGGATCAGGCATTATTACAAACAGGTGGCATGCATAATCAAAATGTTCATTTCAACTTGCATAATAGTCTTACTAGAGATTTTTTAGGCATGGGAAATGAAGGGGGTCAGCCATTTTTGCCACAAGAATTAGCAAAGTTTGCTTCAATCAATTCAGCTATGGGGTTAAGCCATTACAGTACTGGTCACTAGTCCTACCAAGTTTTTTTTT--TTTTTTTTGTAT-TA--AAAAAAATAGAATAATGTAAAATTTGAATCTTATCTTATTATCAAGCTGGCATTTTTTTTT</genome_strand>
        <mrna_strand>CCCAAATTACCTTTTCGAACACCACTTTGGAGTAATGAACTCATCATCTTCTCCTTCATTCAAACAACACAACACAAATCTTCAACAACAATGAAATTCATCAAGCTTTTGCAAAACAAACAGAGGATTACAATCAAACAGAGAATATACCTCATCAATGGGTGTCCAAATATGAATTCATCTGTTCATTCTAAAGCAATCAATTTGGATCAGGCATTATTACAAACAGGTGGCATGCATAATCAAACTGTTCATTTCAACTTGCATAATAGTCTTACTAGAGATTTTTTAGGCATGGGGAATGAAGGGGGTCAGCCATTTTTGCCACAAGAATTGGCAAAGTTTGCTTCAATGAATGCAGCTATGGGGTTAAGCCATTACAGTACTGGTCACTAGTCCTAGCAAGTTTTTTTTTTTTTTTTTTTTTTTGTATTACAAAAATACAATAATGTAAAATTTGAACCTTATCTTATTAGCAAGCTGGCATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342016" ref_strand="+" ref_description="SGN-E342016 [cTOF-10-M4]">
      <seq>acaaagaacatcttatccaattacccttttatttttcacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccaagttaagttatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43833" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44133" g_stop="44449" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45232" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="671" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E342016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44133" e_stop="44449"/>
          <exon e_start="44878" e_stop="45232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTC</genome_strand>
        <mrna_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCA-AGTTAAGTTATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347775" ref_strand="+" ref_description="SGN-E347775 [cTOF-26-D19]">
      <seq>tccaattacccttttatttttacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttgggtagccaaagaggatggatgtttgcataacaaacacagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43848" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44148" g_stop="44449" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45277" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="701" r_length="400" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E347775" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44148" e_stop="44449"/>
          <exon e_start="44878" e_stop="45277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTG</genome_strand>
        <mrna_strand>TCCAATTACCCTTTTATTTTT-ACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGGTAGCCAAAGAGGATGGATGTTTGCATAACAAACACAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322615" ref_strand="+" ref_description="SGN-E322615 [cTOB-26-I7]">
      <seq>ttttcttttttatttttcacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggacttttcaggcgtaaaccccaatagctttgatggtcatgggaaatatagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43853" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44152" g_stop="44449" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45187" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="608" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E322615" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44152" e_stop="44449"/>
          <exon e_start="44878" e_stop="45187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTG</genome_strand>
        <mrna_strand>TTTTCTTTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTTCAGGCGTAAACCCCAATAGCTTTGATGGTCATGGGAAATATAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734704" ref_strand="+" ref_description="SGN-E734704 [LB13BE05]">
      <seq>cacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43871" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44171" g_stop="44449" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45317" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="719" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E734704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44171" e_stop="44449"/>
          <exon e_start="44878" e_stop="45317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGG</genome_strand>
        <mrna_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459447" ref_strand="+" ref_description="SGN-E459447 [cPRO-27-L16]">
      <seq>gaggcacacacacacagaaaaagctcagtgaaatggcggcatcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaaccctaagctccggtcgtccaataaattgacggtgaaagcttcagcaatagtactggtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgttccattgttgaaagaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcagtgaatgatttggcattaatcacagggcaaaggcctgtgaagactaggtctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtgatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagctaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43900" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44178" g_stop="44449" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="287" r_length="274" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45327" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="737" r_length="450" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E459447" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44178" e_stop="44449"/>
          <exon e_start="44878" e_stop="45327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAGCTCAGAGAAA-AT-GGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTT</genome_strand>
        <mrna_strand>ACAGAAAAAGCTCAGTGAAATGGCGGCATCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAACCCTAAGCTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAATAGTACTGGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTTCCATTGTTGAAAGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAGTGAATGATTTGGCATTAATCACAGGGCAAAGGCCTGTGAAGACTAGGTCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTGATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGCTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435858" ref_strand="+" ref_description="SGN-E435858 [STM-62-M17]">
      <seq>gaggcacacacacacagaaaaagctcagtgaaatggcggcatcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaaccctaagctccggtcgtccaataaattgacggtgaaagcttcagcaatagtactggtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgttccattgttgaaagaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcagtgaatgatttggcattaatcacagggcaaaggcctgtgaagactaggtctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtgatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43900" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44178" g_stop="44449" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="287" r_length="274" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45189" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="599" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E435858" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44178" e_stop="44449"/>
          <exon e_start="44878" e_stop="45189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAGCTCAGAGAAA-AT-GGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGC</genome_strand>
        <mrna_strand>ACAGAAAAAGCTCAGTGAAATGGCGGCATCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAACCCTAAGCTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAATAGTACTGGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTTCCATTGTTGAAAGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAGTGAATGATTTGGCATTAATCACAGGGCAAAGGCCTGTGAAGACTAGGTCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTGATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292760" ref_strand="+" ref_description="SGN-E292760 [cLET-11-F18]">
      <seq>agaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43880" stop="45357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44180" g_stop="44449" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45057" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="450" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E292760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44180" e_stop="44449"/>
          <exon e_start="44878" e_stop="45057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATT</genome_strand>
        <mrna_strand>AGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706016" ref_strand="+" ref_description="SGN-E706016 [FA28DB02]">
      <seq>gaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtgtataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgangtggatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43881" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44181" g_stop="44449" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45369" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="761" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E706016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44181" e_stop="44449"/>
          <exon e_start="44878" e_stop="45369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</genome_strand>
        <mrna_strand>GAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGTATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702078" ref_strand="+" ref_description="SGN-E702078 [FA17DA02]">
      <seq>aacaatctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43883" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44182" g_stop="44449" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45369" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="759" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E702078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44182" e_stop="44449"/>
          <exon e_start="44878" e_stop="45369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</genome_strand>
        <mrna_strand>AACAATCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTAC-ATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289459" ref_strand="+" ref_description="SGN-E289459 [cLET-3-H8]">
      <seq>agaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43893" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44193" g_stop="44449" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45071" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="451" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E289459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44193" e_stop="44449"/>
          <exon e_start="44878" e_stop="45071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</genome_strand>
        <mrna_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346430" ref_strand="+" ref_description="SGN-E346430 [cTOF-23-B3]">
      <seq>gcaaccaattgcaggattagagagaggtggagttgcagtatcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctctcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggantggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="43968" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44272" g_stop="44449" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="218" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45369" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="712" r_length="494" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E346430" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44272" e_stop="44449"/>
          <exon e_start="44878" e_stop="45369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGA-TGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAG-AAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</genome_strand>
        <mrna_strand>TCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTCTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGANTGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343227" ref_strand="+" ref_description="SGN-E343227 [cTOF-17-N14]">
      <seq>gtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggantggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0072G22-3gVxx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0072G22.3" temp_strand="+" temp_description="C09HBa0072G22.3  EF576813.3 htgs_phase:3 submitted_to_sgn_as:gb|EF576813| upload_account_name:spain (1 - 45369)">
        <position start="44005" stop="45369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44305" g_stop="44449" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44878" g_stop="45369" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="638" r_length="493" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.3" gen_strand="+" ref_id="SGN-E343227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44305" e_stop="44449"/>
          <exon e_start="44878" e_stop="45369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGA-TGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</genome_strand>
        <mrna_strand>GTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGANTGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>63</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11615" PGL_stop="8454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11615" e_stop="11429"/>
            <exon e_start="9480" e_stop="9381"/>
            <exon e_start="8624" e_stop="8454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.968"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="0.970"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="11615" e_stop="11429" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="11428" i_stop="9481" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="9480" e_stop="9381" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9380" i_stop="8625" i_length="756"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8624" e_stop="8454" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11615" stop="11429"/>
              <exon start="9480" stop="9381"/>
              <exon start="8624" stop="8454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11615" stop="11429"/>
              <exon start="9480" stop="9381"/>
              <exon start="8624" stop="8465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCG : TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT : GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</gDNA_template>
            <first_frame> F  L  S  L  Y  V  F  V  F  S  F  I  *  N  N  N  V  S  K  N  N  N  Y  L  P  I  L  I  L  R  K  K  K  V  I  H  K  L  N  L  F  V  S  I  I  R  S  S  T  S  K  S  Y  R  F  L  H  R  Q  N  F  S   : V  Y  H  S  A  A  E  L  K  T  L  Q  G  P  E  D  I  I  L  F  L  C  G  *  P  D  L  S  E  T  H  L  F  M :   L  G  K  L  A  A  Y  Y  C  Q  M  K  D  I  A  L  D  S  *  E  W  V  S  W  A  K  *  F  I  L  G  L  C  W  S  *  F  E  L  N  I  G  H  V  I  K  F  H  F  Y  W  H  I  L  F  *   </first_frame>
            <second_frame>  F  S  L  F  T  C  L  S  F  L  L  S  K  I  I  M  L  V  K  I  I  I  I  S  L  Y  *  F  S  G  K  K  K  L  F  I  N  *  I  Y  S  S  Q  S  S  D  H  P  Q  A  K  A  T  G  F  F  T  G  K  T  S  P  :  Y  I  T  Q  P  Q  S  *  R  P  C  K  D  L  K  T  *  Y  F  S  F  V  A  D  Q  I  *  V  R  L  T  C  S   : C  *  G  S  W  R  L  I  I  V  R  *  R  I  L  P  *  I  H  K  N  G  F  P  G  L  N  S  S  Y  *  G  F  V  G  V  D  L  S  L  I  L  G  M  *  S  N  S  I  S  I  G  I  S  C  F  D  </second_frame>
            <third_frame>   S  L  S  L  R  V  C  L  F  F  Y  L  K  *  *  C  *  *  K  *  *  L  S  P  Y  I  N  S  Q  E  K  K  S  Y  S  *  I  K  F  I  R  L  N  H  P  I  I  H  K  Q  K  L  P  V  S  S  P  A  K  L  L  R :   I  S  L  S  R  R  V  K  D  L  A  R  T  *  R  H  N  T  F  P  L  W  L  T  R  F  E  *  D  S  L  V  H  :  A  R  E  A  G  G  L  L  L  S  D  E  G  Y  C  P  R  F  I  R  M  G  F  L  G  *  I  V  H  T  R  A  L  L  E  L  I  *  A  *  Y  W  A  C  D  Q  I  P  F  L  L  A  Y  L  V  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11576" stop="11429"/>
                    <exon start="9480" stop="9410"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNVSKNNNYLPILILRKKKVIHKLNLFVSIIRSSTSKSYRFLHRQNFSVYHSAAELKTLQGPEDIILFLCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16555" PGL_stop="29958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16555" e_stop="16706"/>
            <exon e_start="16792" e_stop="16842"/>
            <exon e_start="16917" e_stop="16985"/>
            <exon e_start="17199" e_stop="17258"/>
            <exon e_start="17515" e_stop="17684"/>
            <exon e_start="17786" e_stop="17858"/>
            <exon e_start="19265" e_stop="19330"/>
            <exon e_start="19412" e_stop="19495"/>
            <exon e_start="19642" e_stop="19719"/>
            <exon e_start="20011" e_stop="20094"/>
            <exon e_start="20199" e_stop="20278"/>
            <exon e_start="20408" e_stop="20465"/>
            <exon e_start="20545" e_stop="20847"/>
            <exon e_start="20944" e_stop="21114"/>
            <exon e_start="23416" e_stop="23615"/>
            <exon e_start="24015" e_stop="24420"/>
            <exon e_start="24895" e_stop="25146"/>
            <exon e_start="25235" e_stop="25735"/>
            <exon e_start="26273" e_stop="26379"/>
            <exon e_start="27277" e_stop="27376"/>
            <exon e_start="28101" e_stop="28249"/>
            <exon e_start="29314" e_stop="29726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.984" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.901" e_score="0.975"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.997" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16706" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16707" i_stop="16791" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16792" e_stop="16842" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16843" i_stop="16916" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16917" e_stop="16985" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16986" i_stop="17198" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17258" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="17259" i_stop="17514" i_length="256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17515" e_stop="17684" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="17685" i_stop="17785" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17786" e_stop="17858" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.982">
            <gDNA_intron_boundary i_start="17859" i_stop="19264" i_length="1406"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19265" e_stop="19330" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.943">
            <gDNA_intron_boundary i_start="19331" i_stop="19411" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19412" e_stop="19495" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19496" i_stop="19641" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19642" e_stop="19719" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19720" i_stop="20010" i_length="291"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="20011" e_stop="20094" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.624" acc_prob="0.984">
            <gDNA_intron_boundary i_start="20095" i_stop="20198" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="0.975">
            <gDNA_exon_boundary e_start="20199" e_stop="20278" e_length="80"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.901">
            <gDNA_intron_boundary i_start="20279" i_stop="20407" i_length="129"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="20408" e_stop="20465" e_length="58"/>
          </exon>
          <intron i_serial="12" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="20466" i_stop="20544" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.987">
            <gDNA_exon_boundary e_start="20545" e_stop="20847" e_length="303"/>
          </exon>
          <intron i_serial="13" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20848" i_stop="20943" i_length="96"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="21114" e_length="171"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="23416" e_stop="23615" e_length="200"/>
          </exon>
          <intron i_serial="15" don_prob="0.858" acc_prob="0.981">
            <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399"/>
          </intron>
          <exon e_serial="16" e_score="0.987">
            <gDNA_exon_boundary e_start="24015" e_stop="24420" e_length="406"/>
          </exon>
          <intron i_serial="16" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="24895" e_stop="25146" e_length="252"/>
          </exon>
          <intron i_serial="17" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88"/>
          </intron>
          <exon e_serial="18" e_score="0.977">
            <gDNA_exon_boundary e_start="25235" e_stop="25735" e_length="501"/>
          </exon>
          <intron i_serial="18" don_prob="0.932" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="26273" e_stop="26379" e_length="107"/>
          </exon>
          <intron i_serial="19" don_prob="0.997" acc_prob="0.576">
            <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="27277" e_stop="27376" e_length="100"/>
          </exon>
          <intron i_serial="20" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724"/>
          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="28101" e_stop="28249" e_length="149"/>
          </exon>
          <intron i_serial="21" don_prob="0.931" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064"/>
          </intron>
          <exon e_serial="22" e_score="0.995">
            <gDNA_exon_boundary e_start="29314" e_stop="29726" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16555" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
              <exon start="17199" stop="17258"/>
              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16568" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
              <exon start="17199" stop="17258"/>
              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19495"/>
              <exon start="19642" stop="19719"/>
              <exon start="20011" stop="20016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16587" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
              <exon start="17199" stop="17258"/>
              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16588" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
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              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16608" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
              <exon start="17199" stop="17258"/>
              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16635" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
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              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16640" stop="16706"/>
              <exon start="16792" stop="16842"/>
              <exon start="16917" stop="16985"/>
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              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17201" stop="17258"/>
              <exon start="17515" stop="17684"/>
              <exon start="17786" stop="17858"/>
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              <exon start="19412" stop="19495"/>
              <exon start="19642" stop="19719"/>
              <exon start="20011" stop="20022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17800" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19495"/>
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              <exon start="20408" stop="20465"/>
              <exon start="20545" stop="20662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17816" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19495"/>
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              <exon start="20199" stop="20278"/>
              <exon start="20408" stop="20465"/>
              <exon start="20545" stop="20847"/>
              <exon start="20944" stop="20948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17838" stop="17858"/>
              <exon start="19265" stop="19330"/>
              <exon start="19412" stop="19495"/>
              <exon start="19642" stop="19719"/>
              <exon start="20011" stop="20094"/>
              <exon start="20199" stop="20278"/>
              <exon start="20408" stop="20465"/>
              <exon start="20545" stop="20619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20074" stop="20094"/>
              <exon start="20199" stop="20278"/>
              <exon start="20408" stop="20465"/>
              <exon start="20545" stop="20811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20225" stop="20278"/>
              <exon start="20408" stop="20465"/>
              <exon start="20545" stop="20847"/>
              <exon start="20944" stop="21114"/>
              <exon start="23416" stop="23526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20570" stop="20847"/>
              <exon start="20944" stop="21114"/>
              <exon start="23416" stop="23534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20779" stop="20847"/>
              <exon start="20944" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20962" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24039" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24244" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24246" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24288" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24925" stop="25146"/>
              <exon start="25235" stop="25549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25115" stop="25146"/>
              <exon start="25235" stop="25719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25243" stop="25682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25358" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25402" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25550" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25619" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25687" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27281" stop="27376"/>
              <exon start="28101" stop="28208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28103" stop="28249"/>
              <exon start="29314" stop="29657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29314" stop="29726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29364" stop="29707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG : GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG : GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG : GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG : GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC : GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT : GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG : GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG : GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAG : GTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAG : TGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAG : GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG : GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG : ATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG : GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG : ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG : GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG : TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG : AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG : GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG : GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA : GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAA</gDNA_template>
            <first_frame> *  T  S  *  R  L  A  L  G  Y  S  S  K  P  P  S  I  H  *  L  S  P  P  P  P  S  A  A  G  G  H  F  Q  R  T  F  L  I  S  D  V  V  F  S  L  L  N  P  I  I  W :   L  T  R  R  V  N  H  T  R  Q  G  K  I  A  N  R  R :   Q  Q  H  Q  K  E  N  N  *  H  L  K  S  W  R  R  R  R  R  K  K  K  R :   L  E  R  K  S  *  K  N  S  R  L  H  K  K  P  K  Q  Q  N  R :   H  K  P  A  P  L  C  Q  R  L  L  R  R  R  A  Q  K  G  M  V  E  R  R  T  L  R  I  L  L  I  Q  K  H  V  W  G  R  R  R  N  S  P  E  K  W  Q  R  L  L  I  P  V  L  *  R  N   : R  G  M  R  G  G  K  S  P  I  S  L  L  Q  T  Q  T  A  L  N  H  L  L  *  L :   S  C  P  H  Q  M  *  L  V  L  S  I  *  D  M  H  L  L  L  P  S  R :   I  L  L  F  V  G  G  E  C  L  D  T  T  P  C  G  S  P  G  W  I  M  L  G  *  Q  L  R :   L  L  W  R  R  R  S  C  E  K  G  I  *  L  D  M  I  L  V  G  R  S  L  L  L  R :   S  G  I  G  R  M  S  T  G  V  P  Y  Y  S  N  Y  V  A  W  V  R  H  L  I  G  L  V  S :   A  L  P  W  M  R  K  G  L  R  L  *  L  K  H  L  L  G  F  P  M  K  V  L  Y  T   : G  L  H  V  W  C  I  G  I  V  S  C  V  L  Q  S  L  I  L  R :   L  N  I  Q  T  S  K  R  G  H  F  *  M  F  L  D  M  K  N  P  W  S  S  G  C  *  P  H  L  L  T  P  *  K  A  I  L  V  K  L  L  W  R  P  P  E  L  K  L  C  L  V  I  L  Q  L  L  Y  I  L  K  T  K  D  T  V  T  F  M  G  N  L  L  F  I  H  S  M  E  D  S  F  Q  *  F  V  M  I  Y  L  *  I  *  T  L  G  L  V  L  L  R :   *  L  Q  P  M  T  Q  M  I  L  R  L  D  S  V  T  N  *  N  S  *  V  F  L  L  M  M  G  I  *  I  A  M  L  V  Q  T  L  K  E  C  L  V  S  K  L  V  S  L  *  Q  K  L  *  K  K  R :   V  S  T  G  V  L  R  I  M  R  C  A  L  G  F  V  Q  E  A  M  M  *  W  S  L  L  *  S  L  N  G  L  S  T  A  K  L  W  P  S  R  L  W  M  L  L  W  M  R  I  I  R  N  W  R  S  S  Q  S  N  M  V  L  N  G  E   : D  G  L  R  I  F  V  I  G  A  S  Q  G  N  F  G  G  V  I  V  F  L  L  G  M  S  H  *  V  M  I  S  R  R  N  L  V  C  L  T  I  T  G  L  L  L  E  M  K  K  K  L  E  I  W  L  L  G  N  F  R  G  R  R  L  L  S  S  L  K  I  Q  M  C  W  I  P  G  F  R  L  V  F  S  H  Y  L  Y  W  G  G  Q  I  I  L  Q  I  S  K  H  F  I  Q  L  Q  F  L  K  P  D  M  I  F  S  S  S  G  S  H  E  W  *  C  W  E  *  S  W  E  V  I  F  H  F  Q  R :   F  I  C  I  Q  *  S  A  M  L  M  G  V  R  C  R  S  R  W  E  M  L  L  I  P  L  K  L  L  M  E  S  H  L  M  V  F  I  R  D  *  R  R  V  T  *  T  Q  K  N  L  R  G  Q  K  R  D  R  Q  R  T  F  L  M  V  F  L  N  V  V  Q  M  L  F  D  L  P  L  S  H  T  L  P  S :   P  I  R  S  I  L  I  F  R  E  W  L  V  I  V  N  G  V  T  N  C  G  M  P  L  G  L  P  *  V  N  W  V  K  I  T  P  L  Q  Q  R  *  F  L  M  K  C  L  L  A  A  S  G  Y  S  Q  H  L  T  R  P  *  Q  E  L  S  H  P  W  N  L  M  I  S  P  M  Q  Q  Q  Q  Y  I  L  G  G  S  F  S  C  V  M  C  L  *  K  *  S  S  H  T  S  L  V  I  I  Q  N  L  Y  L  Q  E  D  L  L  R  T  P  C  G  F  A  *  I  T  G  *  D  Y  S  I  H  L  C  L  L  S  P  K  N  C  G  S  A  F  L  L  A  G  I  L  *  R  K  N  L  *  *  *  V  I  I  L  H  M  *  R :   A  G  I  M  I  M  W  K  L  R  W  K  R  C  H  P  L  L  E  D  *  G  R  R  G  H  C  C  L  Q  R  R  D  L  Q   : G  E  K  R  L  C  F  A  G  Q  M  I  L  L  R  S  *  K  A  A  N  L  R  F  L  L  *  L  H  C  H  L  *  R :   S  Q  V  T  L  M  Q  L  Q  L  N  G  *  Q  K  W  W  M  N  Q  S  Q  F  F  S  R  I  R  G  L  S  L  T  L  R  L  K  L  K  G  S  K  R  R  E  R  R  R  E   : S  N  M  K  P  *  P  K  P  *  V  P  L  A  T  K  R  K  F  V  L  T  F  T  K  K  I  H  *  N  L  V  P  S  S  K  N  W  N  H  S  K  K  I  L  S  V  S  Y  V  K  W  R  H  Y  N  W  S  N  F  I  M  L  C  L  D  C  S  T  H  S  A  P  I  S  F  F  I  F  *  N  V  L  S  *  I  L  L  L  L  V  Y  H  V  A  F  F  L  Y  T  N  Y  D  S  *  N  F  *  D  N  K  V  I  S  V  I  C  D  M  N  R  L  N  I  S  F  L  N  L  L  I  F  C  P  *  P  H  K </first_frame>
            <second_frame>  K  L  H  N  G  L  P  *  G  T  R  Q  S  L  P  V  F  T  N  S  V  H  H  L  H  R  P  P  A  A  I  S  N  E  L  F  S  S  P  T  S  Y  F  L  F  *  T  R  *  Y   : G  *  L  G  E  *  I  T  R  D  R  E  K  L  Q  T  G   : G  S  S  I  R  R  K  T  I  D  T  *  R  A  G  E  E  E  E  E  R  R  K   : G  *  R  E  R  V  E  K  T  Q  G  C  T  K  S  R  S  S  K  T   : G  T  S  Q  L  H  C  V  K  D  C  *  E  E  E  L  K  K  G  W  W  R  G  E  P  *  G  F  C  *  S  R  N  T  S  G  G  E  E  E  T  L  P  R  N  G  K  D  F  *  S  Q  C  C  R  E  I  :  V  V  C  V  V  G  K  V  Q  F  L  C  C  R  P  K  Q  R  *  T  T  F  C  D   : C  L  A  P  T  K  C  D  W  C  S  P  Y  R  T  C  T  Y  C  C  H  R   : G  Y  Y  Y  S  L  A  E  N  V  W  I  Q  H  L  V  G  P  R  D  G  S  C  W  D  S  N  S   : G  C  C  G  E  E  D  H  A  R  K  E  F  D  *  T  *  Y  W  S  G  E  V  C  C  *   : G  L  E  L  E  E  *  V  R  G  Y  H  T  T  A  I  T  S  P  G  C  V  T  *  L  V  S  *   : V  L  Y  H  G  *  E  K  V  *  G  C  N  *  S  I  C  *  A  F  Q  *  R  S  Y  I  Q  :  G  S  T  Y  G  A  L  G  L  C  L  A  Y  C  N  L  *  Y  *   : G  *  I  Y  R  H  Q  R  E  D  T  S  E  C  S  W  I  *  R  T  R  G  V  R  V  A  D  L  I  C  L  P  L  R  R  R  S  W  *  N  C  C  G  D  H  Q  N  *  N  Y  A  W  *  Y  C  N  C  Y  T  S  *  R  Q  K  I  Q  S  P  S  W  E  I  C  Y  S  S  I  Q  W  K  T  A  S  N  S  L  *  *  Y  T  C  R  Y  E  L  W  D  W  C  C  *   : D  N  S  S  P  *  P  K  *  F  *  G  W  T  A  S  Q  T  R  I  H  K  Y  F  Y  *  *  W  E  Y  K  *  Q  C  W  S  R  L  *  R  N  A  S  F  Q  S  S  C  R  C  N  R  S  F  K  R  K   : G  S  L  Q  G  C  *  E  *  *  D  A  P  W  D  L  F  K  K  Q  *  C  S  G  A  S  Y  K  A  S  M  V  C  Q  L  Q  N  Y  G  Q  A  G  F  G  C  C  C  G  *  G  *  S  E  T  G  D  H  P  K  A  I  W  C  *  M  E  K  :  M  A  *  E  Y  S  *  L  V  H  L  K  A  T  L  V  G  S  S  Y  S  C  L  V  C  H  T  E  *  *  *  A  E  G  I  W  C  V  *  R  S  L  D  C  C  *  K  *  R  R  S  S  R  F  G  F  *  E  I  F  G  E  E  D  C  *  A  L  S  R  S  R  C  A  G  Y  L  V  F  V  W  S  F  P  I  I  C  I  G  V  A  R  *  Y  C  R  F  Q  N  I  L  S  N  F  S  S  *  N  R  T  *  Y  S  L  L  L  G  R  T  N  G  N  V  G  N  K  A  G  R  *  S  S  I  F  K   : G  L  F  A  S  N  D  P  R  C  S  W  A  *  D  V  E  V  V  G  K  C  Y  *  S  P  *  S  Y  *  W  N  H  T  *  W  S  S  *  E  I  K  G  G  *  P  R  R  K  R  I  *  E  G  K  R  G  T  G  K  G  L  S  *  W  Y  S  *  M  W  C  R  C  S  S  I  C  P  C  L  I  H  C  P   : V  R  *  D  Q  S  *  Y  S  E  S  G  W  L  S  S  M  V  *  Q  T  V  E  C  H  *  V  C  H  E  *  I  G  *  R  L  H  P  S  N  K  D  S  S  S  *  N  A  F  *  L  P  V  D  T  L  S  T  *  Q  G  H  S  K  N  C  L  I  P  G  I  L  *  F  L  R  C  S  N  S  S  I  F  L  V  A  V  S  V  V  *  C  V  Y  R  S  N  Q  A  I  L  H  W  *  *  S  R  I  C  I  C  K  K  I  C  S  G  H  L  V  A  L  L  R  *  R  V  E  I  T  P  S  I  Y  A  F  C  H  R  R  I  V  A  A  P  S  C  *  R  G  F  Y  K  E  R  I  Y  S  D  K  *  L  S  F  I  C  R   : E  L  E  *  *  *  C  G  N  *  D  G  K  G  V  I  H  C  *  R  T  E  V  E  E  G  I  V  A  S  K  G  E  I  C  K  :  A  R  S  V  C  A  L  P  D  K  *  Y  C  *  D  H  K  K  P  R  T  *  D  F  Y  F  S  Y  T  V  I  F  E   : G  L  K  *  H  *  C  S  S  N  S  M  A  D  R  S  G  G  *  I  N  H  S  F  S  R  G  *  G  D  Y  H  *  P  *  G  *  S  *  K  A  Q  K  E  E  R  G  D  E  K  :  A  I  *  N  L  N  Q  N  H  E  Y  L  W  L  Q  R  E  S  S  C  *  R  S  R  R  K  Y  I  K  T  W  C  P  Q  A  R  T  G  I  I  R  R  K  Y  *  A  S  H  T  S  N  G  G  T  I  I  G  V  I  S  S  C  C  A  L  I  V  Q  H  I  L  P  L  Y  L  F  S  F  F  K  M  F  *  V  K  F  C  C  Y  *  C  T  M  L  H  F  F  C  I  L  I  T  I  L  E  I  F  E  I  T  R  *  F  L  *  F  V  I  *  I  G  L  I  L  A  S  S  I  C  *  Y  F  A  L  D  H  I   </second_frame>
            <third_frame>   N  F  I  T  A  C  L  R  V  L  V  K  A  S  Q  Y  S  L  T  Q  S  T  T  S  I  G  R  R  R  P  F  P  T  N  F  S  H  L  R  R  R  I  F  S  S  K  P  D  N  M  :  A  D  S  E  S  K  S  H  E  T  G  K  N  C  K  P  E  :  A  A  A  S  E  G  K  Q  L  T  P  E  E  L  E  K  K  K  K  K  E  E  K  :  A  R  E  K  E  L  K  K  L  K  A  A  Q  K  A  E  A  A  K  Q  :  A  Q  A  S  S  T  V  S  K  T  A  K  K  K  S  S  K  R  D  G  G  E  E  N  P  E  D  F  V  D  P  E  T  R  L  G  E  K  K  K  L  S  R  E  M  A  K  T  F  N  P  S  A  V  E  K  S :   W  Y  A  W  W  E  K  S  N  F  F  V  A  D  P  N  S  A  K  P  P  F  V  I  :  V  L  P  P  P  N  V  T  G  A  L  H  I  G  H  A  L  T  A  A  I  E  :  D  T  I  I  R  W  R  R  M  S  G  Y  N  T  L  W  V  P  G  M  D  H  A  G  I  A  T  Q  :  V  V  V  E  K  K  I  M  R  E  R  N  L  T  R  H  D  I  G  R  E  K  F  V  A  E  :  V  W  N  W  K  N  E  Y  G  G  T  I  L  Q  Q  L  R  R  L  G  A  S  L  D  W  S  R  E  :  C  F  T  M  D  E  K  R  S  K  A  V  T  E  A  F  V  R  L  S  N  E  G  L  I  Y  R :   A  P  R  M  V  H  W  D  C  V  L  R  T  A  I  S  D  I  E  :  V  E  Y  T  D  I  K  E  R  T  L  L  N  V  P  G  Y  E  E  P  V  E  F  G  L  L  T  S  F  A  Y  P  L  E  G  D  L  G  E  I  V  V  A  T  T  R  I  E  T  M  L  G  D  T  A  I  A  I  H  P  E  D  K  R  Y  S  H  L  H  G  K  F  A  I  H  P  F  N  G  R  Q  L  P  I  V  C  D  D  I  L  V  D  M  N  F  G  T  G  A  V  K  :  I  T  P  A  H  D  P  N  D  F  E  V  G  Q  R  H  K  L  E  F  I  S  I  F  T  D  D  G  N  I  N  S  N  A  G  P  D  F  E  G  M  P  R  F  K  A  R  V  A  V  T  E  A  L  K  E  K  :  G  L  Y  R  G  A  K  N  N  E  M  R  L  G  I  C  S  R  S  N  D  V  V  E  P  L  I  K  P  Q  W  F  V  N  C  K  I  M  A  K  Q  A  L  D  A  V  V  D  E  D  N  Q  K  L  E  I  I  P  K  Q  Y  G  A  E  W  R  R :   W  L  E  N  I  R  D  W  C  I  S  R  Q  L  W  W  G  H  R  I  P  A  W  Y  V  T  L  S  D  D  K  Q  K  E  F  G  V  S  D  D  H  W  I  V  A  R  N  E  E  E  A  R  D  L  A  S  R  K  F  S  G  K  K  I  V  E  L  S  Q  D  P  D  V  L  D  T  W  F  S  S  G  L  F  P  L  S  V  L  G  W  P  D  N  T  A  D  F  K  T  F  Y  P  T  S  V  L  E  T  G  H  D  I  L  F  F  W  V  A  R  M  V  M  L  G  I  K  L  G  G  D  L  P  F  S  K  :  V  Y  L  H  P  M  I  R  D  A  H  G  R  K  M  S  K  S  L  G  N  V  I  D  P  L  E  V  I  N  G  I  T  L  D  G  L  H  K  R  L  K  E  G  N  L  D  A  K  E  F  E  R  A  K  E  G  Q  A  K  D  F  P  D  G  I  P  E  C  G  A  D  A  L  R  F  A  L  V  S  Y  T  A  Q  :  S  D  K  I  N  L  D  I  Q  R  V  V  G  Y  R  Q  W  C  N  K  L  W  N  A  I  R  F  A  M  S  K  L  G  E  D  Y  T  P  P  T  K  I  V  P  H  E  M  P  F  S  C  Q  W  I  L  S  A  L  N  K  A  I  A  R  T  V  S  S  L  E  S  Y  D  F  S  D  A  A  T  A  V  Y  S  W  W  Q  F  Q  L  C  D  V  F  I  E  V  I  K  P  Y  F  T  G  D  N  P  E  F  V  S  A  R  R  S  A  Q  D  T  L  W  L  C  L  D  N  G  L  R  L  L  H  P  F  M  P  F  V  T  E  E  L  W  Q  R  L  P  A  S  G  D  S  I  K  K  E  S  I  V  I  S  D  Y  P  S  Y  V  E  :  S  W  N  N  D  N  V  E  T  E  M  E  K  V  S  S  I  V  R  G  L  R  S  K  R  A  L  L  P  P  K  E  R  F  A  R :   R  E  A  F  V  L  C  R  T  N  D  T  V  E  I  I  K  S  R  E  L  E  I  S  T  L  A  T  L  S  S  L  K  :  V  S  S  D  T  D  A  A  P  T  Q  W  L  T  E  V  V  D  E  S  I  T  V  F  L  E  D  K  G  T  I  I  N  P  E  A  E  V  E  R  L  K  K  K  R  E  E  T  R  K :   Q  Y  E  T  L  T  K  T  M  S  T  S  G  Y  K  E  K  V  R  A  N  V  H  E  E  N  T  L  K  L  G  A  L  K  Q  E  L  E  S  F  E  E  N  I  E  R  L  I  R  Q  M  E  A  L  *  L  E  *  F  H  H  V  V  P  *  L  F  N  T  F  C  P  Y  I  F  F  H  F  L  K  C  F  K  L  N  F  A  V  I  S  V  P  C  C  I  F  F  V  Y  *  L  R  F  L  K  F  L  R  *  Q  G  D  F  C  N  L  *  Y  E  *  A  *  Y  *  L  P  Q  F  A  N  I  L  P  L  T  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16557" stop="16706"/>
                    <exon start="16792" stop="16842"/>
                    <exon start="16917" stop="16985"/>
                    <exon start="17199" stop="17258"/>
                    <exon start="17515" stop="17684"/>
                    <exon start="17786" stop="17858"/>
                    <exon start="19265" stop="19330"/>
                    <exon start="19412" stop="19495"/>
                    <exon start="19642" stop="19719"/>
                    <exon start="20011" stop="20094"/>
                    <exon start="20199" stop="20278"/>
                    <exon start="20408" stop="20465"/>
                    <exon start="20545" stop="20847"/>
                    <exon start="20944" stop="21114"/>
                    <exon start="23416" stop="23615"/>
                    <exon start="24015" stop="24420"/>
                    <exon start="24895" stop="25146"/>
                    <exon start="25235" stop="25735"/>
                    <exon start="26273" stop="26379"/>
                    <exon start="27277" stop="27376"/>
                    <exon start="28101" stop="28249"/>
                    <exon start="29314" stop="29479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3375</number_coding_nucleotides>
                  <number_encoded_amino_acids>1125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFITACLRVLVKASQYSLTQSTTSIGRRRPFPTNFSHLRRRIFSSKPDNMADSESKSHETGKNCKPEAAASEGKQLTPEELEKKKKKEEKAREKELKKLKAAQKAEAAKQAQASSTVSKTAKKKSSKRDGGEENPEDFVDPETRLGEKKKLSREMAKTFNPSAVEKSWYAWWEKSNFFVADPNSAKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMRERNLTRHDIGREKFVAEVWNWKNEYGGTILQQLRRLGASLDWSRECFTMDEKRSKAVTEAFVRLSNEGLIYRAPRMVHWDCVLRTAISDIEVEYTDIKERTLLNVPGYEEPVEFGLLTSFAYPLEGDLGEIVVATTRIETMLGDTAIAIHPEDKRYSHLHGKFAIHPFNGRQLPIVCDDILVDMNFGTGAVKITPAHDPNDFEVGQRHKLEFISIFTDDGNINSNAGPDFEGMPRFKARVAVTEALKEKGLYRGAKNNEMRLGICSRSNDVVEPLIKPQWFVNCKIMAKQALDAVVDEDNQKLEIIPKQYGAEWRRWLENIRDWCISRQLWWGHRIPAWYVTLSDDKQKEFGVSDDHWIVARNEEEARDLASRKFSGKKIVELSQDPDVLDTWFSSGLFPLSVLGWPDNTADFKTFYPTSVLETGHDILFFWVARMVMLGIKLGGDLPFSKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGITLDGLHKRLKEGNLDAKEFERAKEGQAKDFPDGIPECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMSKLGEDYTPPTKIVPHEMPFSCQWILSALNKAIARTVSSLESYDFSDAATAVYSWWQFQLCDVFIEVIKPYFTGDNPEFVSARRSAQDTLWLCLDNGLRLLHPFMPFVTEELWQRLPASGDSIKKESIVISDYPSYVESWNNDNVETEMEKVSSIVRGLRSKRALLPPKERFARREAFVLCRTNDTVEIIKSRELEISTLATLSSLKVSSDTDAAPTQWLTEVVDESITVFLEDKGTIINPEAEVERLKKKREETRKQYETLTKTMSTSGYKEKVRANVHEENTLKLGALKQELESFEENIERLIRQMEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
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          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
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          <exon-only e_score="0.818"/>
        </SCR_line>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24925" stop="25146"/>
              <exon start="25235" stop="25549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25115" stop="25146"/>
              <exon start="25235" stop="25719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25243" stop="25682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25358" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25402" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25550" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25622" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29484"/>
              <exon start="29772" stop="29958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588450" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27281" stop="27376"/>
              <exon start="28101" stop="28208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG : GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG : GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG : GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG : GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC : GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT : GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG : GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG : GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAG : GTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAG : TGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAG : GGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAG : GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG : ATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG : GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG : ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG : GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG : TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG : AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG : GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG : GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA : GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGA : GCCATTTGATATTACGATGGCTTGGTTTCGCTATCGCTCGTAATTATATTTTTCTTGTTGGATGAGGGATGGGGATAGAGTTTTTGATTTGATGTGACAAAGTGTCTTACATATGTCTACTTTCTAGTAGAAAAAATATCTCCAACTTTTTCAATTATTATTAGTATATTGTGAAATTATATACACC</gDNA_template>
            <first_frame> *  T  S  *  R  L  A  L  G  Y  S  S  K  P  P  S  I  H  *  L  S  P  P  P  P  S  A  A  G  G  H  F  Q  R  T  F  L  I  S  D  V  V  F  S  L  L  N  P  I  I  W :   L  T  R  R  V  N  H  T  R  Q  G  K  I  A  N  R  R :   Q  Q  H  Q  K  E  N  N  *  H  L  K  S  W  R  R  R  R  R  K  K  K  R :   L  E  R  K  S  *  K  N  S  R  L  H  K  K  P  K  Q  Q  N  R :   H  K  P  A  P  L  C  Q  R  L  L  R  R  R  A  Q  K  G  M  V  E  R  R  T  L  R  I  L  L  I  Q  K  H  V  W  G  R  R  R  N  S  P  E  K  W  Q  R  L  L  I  P  V  L  *  R  N   : R  G  M  R  G  G  K  S  P  I  S  L  L  Q  T  Q  T  A  L  N  H  L  L  *  L :   S  C  P  H  Q  M  *  L  V  L  S  I  *  D  M  H  L  L  L  P  S  R :   I  L  L  F  V  G  G  E  C  L  D  T  T  P  C  G  S  P  G  W  I  M  L  G  *  Q  L  R :   L  L  W  R  R  R  S  C  E  K  G  I  *  L  D  M  I  L  V  G  R  S  L  L  L  R :   S  G  I  G  R  M  S  T  G  V  P  Y  Y  S  N  Y  V  A  W  V  R  H  L  I  G  L  V  S :   A  L  P  W  M  R  K  G  L  R  L  *  L  K  H  L  L  G  F  P  M  K  V  L  Y  T   : G  L  H  V  W  C  I  G  I  V  S  C  V  L  Q  S  L  I  L  R :   L  N  I  Q  T  S  K  R  G  H  F  *  M  F  L  D  M  K  N  P  W  S  S  G  C  *  P  H  L  L  T  P  *  K  A  I  L  V  K  L  L  W  R  P  P  E  L  K  L  C  L  V  I  L  Q  L  L  Y  I  L  K  T  K  D  T  V  T  F  M  G  N  L  L  F  I  H  S  M  E  D  S  F  Q  *  F  V  M  I  Y  L  *  I  *  T  L  G  L  V  L  L  R :   *  L  Q  P  M  T  Q  M  I  L  R  L  D  S  V  T  N  *  N  S  *  V  F  L  L  M  M  G  I  *  I  A  M  L  V  Q  T  L  K  E  C  L  V  S  K  L  V  S  L  *  Q  K  L  *  K  K  R :   V  S  T  G  V  L  R  I  M  R  C  A  L  G  F  V  Q  E  A  M  M  *  W  S  L  L  *  S  L  N  G  L  S  T  A  K  L  W  P  S  R  L  W  M  L  L  W  M  R  I  I  R  N  W  R  S  S  Q  S  N  M  V  L  N  G  E   : D  G  L  R  I  F  V  I  G  A  S  Q  G  N  F  G  G  V  I  V  F  L  L  G  M  S  H  *  V  M  I  S  R  R  N  L  V  C  L  T  I  T  G  L  L  L  E  M  K  K  K  L  E  I  W  L  L  G  N  F  R  G  R  R  L  L  S  S  L  K  I  Q  M  C  W  I  P  G  F  R  L  V  F  S  H  Y  L  Y  W  G  G  Q  I  I  L  Q  I  S  K  H  F  I  Q  L  Q  F  L  K  P  D  M  I  F  S  S  S  G  S  H  E  W  *  C  W  E  *  S  W  E  V  I  F  H  F  Q  R :   F  I  C  I  Q  *  S  A  M  L  M  G  V  R  C  R  S  R  W  E  M  L  L  I  P  L  K  L  L  M  E  S  H  L  M  V  F  I  R  D  *  R  R  V  T  *  T  Q  K  N  L  R  G  Q  K  R  D  R  Q  R  T  F  L  M  V  F  L  N  V  V  Q  M  L  F  D  L  P  L  S  H  T  L  P  S :   P  I  R  S  I  L  I  F  R  E  W  L  V  I  V  N  G  V  T  N  C  G  M  P  L  G  L  P  *  V  N  W  V  K  I  T  P  L  Q  Q  R  *  F  L  M  K  C  L  L  A  A  S  G  Y  S  Q  H  L  T  R  P  *  Q  E  L  S  H  P  W  N  L  M  I  S  P  M  Q  Q  Q  Q  Y  I  L  G  G  S  F  S  C  V  M  C  L  *  K  *  S  S  H  T  S  L  V  I  I  Q  N  L  Y  L  Q  E  D  L  L  R  T  P  C  G  F  A  *  I  T  G  *  D  Y  S  I  H  L  C  L  L  S  P  K  N  C  G  S  A  F  L  L  A  G  I  L  *  R  K  N  L  *  *  *  V  I  I  L  H  M  *  R :   A  G  I  M  I  M  W  K  L  R  W  K  R  C  H  P  L  L  E  D  *  G  R  R  G  H  C  C  L  Q  R  R  D  L  Q   : G  E  K  R  L  C  F  A  G  Q  M  I  L  L  R  S  *  K  A  A  N  L  R  F  L  L  *  L  H  C  H  L  *  R :   S  Q  V  T  L  M  Q  L  Q  L  N  G  *  Q  K  W  W  M  N  Q  S  Q  F  F  S  R  I  R  G  L  S  L  T  L  R  L  K  L  K  G  S  K  R  R  E  R  R  R  E   : S  N  M  K  P  *  P  K  P  *  V  P  L  A  T  K  R  K  F  V  L  T  F  T  K  K  I  H  *  N  L  V  P  S  S  K  N  W  N  H  S  K  K  I  L  S  V  S  Y  V  K  W  R  H  Y  N  W   : S  H  L  I  L  R  W  L  G  F  A  I  A  R  N  Y  I  F  L  V  G  *  G  M  G  I  E  F  L  I  *  C  D  K  V  S  Y  I  C  L  L  S  S  R  K  N  I  S  N  F  F  N  Y  Y  *  Y  I  V  K  L  Y  T   </first_frame>
            <second_frame>  K  L  H  N  G  L  P  *  G  T  R  Q  S  L  P  V  F  T  N  S  V  H  H  L  H  R  P  P  A  A  I  S  N  E  L  F  S  S  P  T  S  Y  F  L  F  *  T  R  *  Y   : G  *  L  G  E  *  I  T  R  D  R  E  K  L  Q  T  G   : G  S  S  I  R  R  K  T  I  D  T  *  R  A  G  E  E  E  E  E  R  R  K   : G  *  R  E  R  V  E  K  T  Q  G  C  T  K  S  R  S  S  K  T   : G  T  S  Q  L  H  C  V  K  D  C  *  E  E  E  L  K  K  G  W  W  R  G  E  P  *  G  F  C  *  S  R  N  T  S  G  G  E  E  E  T  L  P  R  N  G  K  D  F  *  S  Q  C  C  R  E  I  :  V  V  C  V  V  G  K  V  Q  F  L  C  C  R  P  K  Q  R  *  T  T  F  C  D   : C  L  A  P  T  K  C  D  W  C  S  P  Y  R  T  C  T  Y  C  C  H  R   : G  Y  Y  Y  S  L  A  E  N  V  W  I  Q  H  L  V  G  P  R  D  G  S  C  W  D  S  N  S   : G  C  C  G  E  E  D  H  A  R  K  E  F  D  *  T  *  Y  W  S  G  E  V  C  C  *   : G  L  E  L  E  E  *  V  R  G  Y  H  T  T  A  I  T  S  P  G  C  V  T  *  L  V  S  *   : V  L  Y  H  G  *  E  K  V  *  G  C  N  *  S  I  C  *  A  F  Q  *  R  S  Y  I  Q  :  G  S  T  Y  G  A  L  G  L  C  L  A  Y  C  N  L  *  Y  *   : G  *  I  Y  R  H  Q  R  E  D  T  S  E  C  S  W  I  *  R  T  R  G  V  R  V  A  D  L  I  C  L  P  L  R  R  R  S  W  *  N  C  C  G  D  H  Q  N  *  N  Y  A  W  *  Y  C  N  C  Y  T  S  *  R  Q  K  I  Q  S  P  S  W  E  I  C  Y  S  S  I  Q  W  K  T  A  S  N  S  L  *  *  Y  T  C  R  Y  E  L  W  D  W  C  C  *   : D  N  S  S  P  *  P  K  *  F  *  G  W  T  A  S  Q  T  R  I  H  K  Y  F  Y  *  *  W  E  Y  K  *  Q  C  W  S  R  L  *  R  N  A  S  F  Q  S  S  C  R  C  N  R  S  F  K  R  K   : G  S  L  Q  G  C  *  E  *  *  D  A  P  W  D  L  F  K  K  Q  *  C  S  G  A  S  Y  K  A  S  M  V  C  Q  L  Q  N  Y  G  Q  A  G  F  G  C  C  C  G  *  G  *  S  E  T  G  D  H  P  K  A  I  W  C  *  M  E  K  :  M  A  *  E  Y  S  *  L  V  H  L  K  A  T  L  V  G  S  S  Y  S  C  L  V  C  H  T  E  *  *  *  A  E  G  I  W  C  V  *  R  S  L  D  C  C  *  K  *  R  R  S  S  R  F  G  F  *  E  I  F  G  E  E  D  C  *  A  L  S  R  S  R  C  A  G  Y  L  V  F  V  W  S  F  P  I  I  C  I  G  V  A  R  *  Y  C  R  F  Q  N  I  L  S  N  F  S  S  *  N  R  T  *  Y  S  L  L  L  G  R  T  N  G  N  V  G  N  K  A  G  R  *  S  S  I  F  K   : G  L  F  A  S  N  D  P  R  C  S  W  A  *  D  V  E  V  V  G  K  C  Y  *  S  P  *  S  Y  *  W  N  H  T  *  W  S  S  *  E  I  K  G  G  *  P  R  R  K  R  I  *  E  G  K  R  G  T  G  K  G  L  S  *  W  Y  S  *  M  W  C  R  C  S  S  I  C  P  C  L  I  H  C  P   : V  R  *  D  Q  S  *  Y  S  E  S  G  W  L  S  S  M  V  *  Q  T  V  E  C  H  *  V  C  H  E  *  I  G  *  R  L  H  P  S  N  K  D  S  S  S  *  N  A  F  *  L  P  V  D  T  L  S  T  *  Q  G  H  S  K  N  C  L  I  P  G  I  L  *  F  L  R  C  S  N  S  S  I  F  L  V  A  V  S  V  V  *  C  V  Y  R  S  N  Q  A  I  L  H  W  *  *  S  R  I  C  I  C  K  K  I  C  S  G  H  L  V  A  L  L  R  *  R  V  E  I  T  P  S  I  Y  A  F  C  H  R  R  I  V  A  A  P  S  C  *  R  G  F  Y  K  E  R  I  Y  S  D  K  *  L  S  F  I  C  R   : E  L  E  *  *  *  C  G  N  *  D  G  K  G  V  I  H  C  *  R  T  E  V  E  E  G  I  V  A  S  K  G  E  I  C  K  :  A  R  S  V  C  A  L  P  D  K  *  Y  C  *  D  H  K  K  P  R  T  *  D  F  Y  F  S  Y  T  V  I  F  E   : G  L  K  *  H  *  C  S  S  N  S  M  A  D  R  S  G  G  *  I  N  H  S  F  S  R  G  *  G  D  Y  H  *  P  *  G  *  S  *  K  A  Q  K  E  E  R  G  D  E  K  :  A  I  *  N  L  N  Q  N  H  E  Y  L  W  L  Q  R  E  S  S  C  *  R  S  R  R  K  Y  I  K  T  W  C  P  Q  A  R  T  G  I  I  R  R  K  Y  *  A  S  H  T  S  N  G  G  T  I  I  G  :  A  I  *  Y  Y  D  G  L  V  S  L  S  L  V  I  I  F  F  L  L  D  E  G  W  G  *  S  F  *  F  D  V  T  K  C  L  T  Y  V  Y  F  L  V  E  K  I  S  P  T  F  S  I  I  I  S  I  L  *  N  Y  I  H  </second_frame>
            <third_frame>   N  F  I  T  A  C  L  R  V  L  V  K  A  S  Q  Y  S  L  T  Q  S  T  T  S  I  G  R  R  R  P  F  P  T  N  F  S  H  L  R  R  R  I  F  S  S  K  P  D  N  M  :  A  D  S  E  S  K  S  H  E  T  G  K  N  C  K  P  E  :  A  A  A  S  E  G  K  Q  L  T  P  E  E  L  E  K  K  K  K  K  E  E  K  :  A  R  E  K  E  L  K  K  L  K  A  A  Q  K  A  E  A  A  K  Q  :  A  Q  A  S  S  T  V  S  K  T  A  K  K  K  S  S  K  R  D  G  G  E  E  N  P  E  D  F  V  D  P  E  T  R  L  G  E  K  K  K  L  S  R  E  M  A  K  T  F  N  P  S  A  V  E  K  S :   W  Y  A  W  W  E  K  S  N  F  F  V  A  D  P  N  S  A  K  P  P  F  V  I  :  V  L  P  P  P  N  V  T  G  A  L  H  I  G  H  A  L  T  A  A  I  E  :  D  T  I  I  R  W  R  R  M  S  G  Y  N  T  L  W  V  P  G  M  D  H  A  G  I  A  T  Q  :  V  V  V  E  K  K  I  M  R  E  R  N  L  T  R  H  D  I  G  R  E  K  F  V  A  E  :  V  W  N  W  K  N  E  Y  G  G  T  I  L  Q  Q  L  R  R  L  G  A  S  L  D  W  S  R  E  :  C  F  T  M  D  E  K  R  S  K  A  V  T  E  A  F  V  R  L  S  N  E  G  L  I  Y  R :   A  P  R  M  V  H  W  D  C  V  L  R  T  A  I  S  D  I  E  :  V  E  Y  T  D  I  K  E  R  T  L  L  N  V  P  G  Y  E  E  P  V  E  F  G  L  L  T  S  F  A  Y  P  L  E  G  D  L  G  E  I  V  V  A  T  T  R  I  E  T  M  L  G  D  T  A  I  A  I  H  P  E  D  K  R  Y  S  H  L  H  G  K  F  A  I  H  P  F  N  G  R  Q  L  P  I  V  C  D  D  I  L  V  D  M  N  F  G  T  G  A  V  K  :  I  T  P  A  H  D  P  N  D  F  E  V  G  Q  R  H  K  L  E  F  I  S  I  F  T  D  D  G  N  I  N  S  N  A  G  P  D  F  E  G  M  P  R  F  K  A  R  V  A  V  T  E  A  L  K  E  K  :  G  L  Y  R  G  A  K  N  N  E  M  R  L  G  I  C  S  R  S  N  D  V  V  E  P  L  I  K  P  Q  W  F  V  N  C  K  I  M  A  K  Q  A  L  D  A  V  V  D  E  D  N  Q  K  L  E  I  I  P  K  Q  Y  G  A  E  W  R  R :   W  L  E  N  I  R  D  W  C  I  S  R  Q  L  W  W  G  H  R  I  P  A  W  Y  V  T  L  S  D  D  K  Q  K  E  F  G  V  S  D  D  H  W  I  V  A  R  N  E  E  E  A  R  D  L  A  S  R  K  F  S  G  K  K  I  V  E  L  S  Q  D  P  D  V  L  D  T  W  F  S  S  G  L  F  P  L  S  V  L  G  W  P  D  N  T  A  D  F  K  T  F  Y  P  T  S  V  L  E  T  G  H  D  I  L  F  F  W  V  A  R  M  V  M  L  G  I  K  L  G  G  D  L  P  F  S  K  :  V  Y  L  H  P  M  I  R  D  A  H  G  R  K  M  S  K  S  L  G  N  V  I  D  P  L  E  V  I  N  G  I  T  L  D  G  L  H  K  R  L  K  E  G  N  L  D  A  K  E  F  E  R  A  K  E  G  Q  A  K  D  F  P  D  G  I  P  E  C  G  A  D  A  L  R  F  A  L  V  S  Y  T  A  Q  :  S  D  K  I  N  L  D  I  Q  R  V  V  G  Y  R  Q  W  C  N  K  L  W  N  A  I  R  F  A  M  S  K  L  G  E  D  Y  T  P  P  T  K  I  V  P  H  E  M  P  F  S  C  Q  W  I  L  S  A  L  N  K  A  I  A  R  T  V  S  S  L  E  S  Y  D  F  S  D  A  A  T  A  V  Y  S  W  W  Q  F  Q  L  C  D  V  F  I  E  V  I  K  P  Y  F  T  G  D  N  P  E  F  V  S  A  R  R  S  A  Q  D  T  L  W  L  C  L  D  N  G  L  R  L  L  H  P  F  M  P  F  V  T  E  E  L  W  Q  R  L  P  A  S  G  D  S  I  K  K  E  S  I  V  I  S  D  Y  P  S  Y  V  E  :  S  W  N  N  D  N  V  E  T  E  M  E  K  V  S  S  I  V  R  G  L  R  S  K  R  A  L  L  P  P  K  E  R  F  A  R :   R  E  A  F  V  L  C  R  T  N  D  T  V  E  I  I  K  S  R  E  L  E  I  S  T  L  A  T  L  S  S  L  K  :  V  S  S  D  T  D  A  A  P  T  Q  W  L  T  E  V  V  D  E  S  I  T  V  F  L  E  D  K  G  T  I  I  N  P  E  A  E  V  E  R  L  K  K  K  R  E  E  T  R  K :   Q  Y  E  T  L  T  K  T  M  S  T  S  G  Y  K  E  K  V  R  A  N  V  H  E  E  N  T  L  K  L  G  A  L  K  Q  E  L  E  S  F  E  E  N  I  E  R  L  I  R  Q  M  E  A  L  *  L  E :   P  F  D  I  T  M  A  W  F  R  Y  R  S  *  L  Y  F  S  C  W  M  R  D  G  D  R  V  F  D  L  M  *  Q  S  V  L  H  M  S  T  F  *  *  K  K  Y  L  Q  L  F  Q  L  L  L  V  Y  C  E  I  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16557" stop="16706"/>
                    <exon start="16792" stop="16842"/>
                    <exon start="16917" stop="16985"/>
                    <exon start="17199" stop="17258"/>
                    <exon start="17515" stop="17684"/>
                    <exon start="17786" stop="17858"/>
                    <exon start="19265" stop="19330"/>
                    <exon start="19412" stop="19495"/>
                    <exon start="19642" stop="19719"/>
                    <exon start="20011" stop="20094"/>
                    <exon start="20199" stop="20278"/>
                    <exon start="20408" stop="20465"/>
                    <exon start="20545" stop="20847"/>
                    <exon start="20944" stop="21114"/>
                    <exon start="23416" stop="23615"/>
                    <exon start="24015" stop="24420"/>
                    <exon start="24895" stop="25146"/>
                    <exon start="25235" stop="25735"/>
                    <exon start="26273" stop="26379"/>
                    <exon start="27277" stop="27376"/>
                    <exon start="28101" stop="28249"/>
                    <exon start="29314" stop="29479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3375</number_coding_nucleotides>
                  <number_encoded_amino_acids>1125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFITACLRVLVKASQYSLTQSTTSIGRRRPFPTNFSHLRRRIFSSKPDNMADSESKSHETGKNCKPEAAASEGKQLTPEELEKKKKKEEKAREKELKKLKAAQKAEAAKQAQASSTVSKTAKKKSSKRDGGEENPEDFVDPETRLGEKKKLSREMAKTFNPSAVEKSWYAWWEKSNFFVADPNSAKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMRERNLTRHDIGREKFVAEVWNWKNEYGGTILQQLRRLGASLDWSRECFTMDEKRSKAVTEAFVRLSNEGLIYRAPRMVHWDCVLRTAISDIEVEYTDIKERTLLNVPGYEEPVEFGLLTSFAYPLEGDLGEIVVATTRIETMLGDTAIAIHPEDKRYSHLHGKFAIHPFNGRQLPIVCDDILVDMNFGTGAVKITPAHDPNDFEVGQRHKLEFISIFTDDGNINSNAGPDFEGMPRFKARVAVTEALKEKGLYRGAKNNEMRLGICSRSNDVVEPLIKPQWFVNCKIMAKQALDAVVDEDNQKLEIIPKQYGAEWRRWLENIRDWCISRQLWWGHRIPAWYVTLSDDKQKEFGVSDDHWIVARNEEEARDLASRKFSGKKIVELSQDPDVLDTWFSSGLFPLSVLGWPDNTADFKTFYPTSVLETGHDILFFWVARMVMLGIKLGGDLPFSKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGITLDGLHKRLKEGNLDAKEFERAKEGQAKDFPDGIPECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMSKLGEDYTPPTKIVPHEMPFSCQWILSALNKAIARTVSSLESYDFSDAATAVYSWWQFQLCDVFIEVIKPYFTGDNPEFVSARRSAQDTLWLCLDNGLRLLHPFMPFVTEELWQRLPASGDSIKKESIVISDYPSYVESWNNDNVETEMEKVSSIVRGLRSKRALLPPKERFARREAFVLCRTNDTVEIIKSRELEISTLATLSSLKVSSDTDAAPTQWLTEVVDESITVFLEDKGTIINPEAEVERLKKKREETRKQYETLTKTMSTSGYKEKVRANVHEENTLKLGALKQELESFEENIERLIRQMEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20943" e_stop="21114"/>
            <exon e_start="23416" e_stop="23615"/>
            <exon e_start="24015" e_stop="24420"/>
            <exon e_start="24895" e_stop="25146"/>
            <exon e_start="25235" e_stop="25735"/>
            <exon e_start="26273" e_stop="26379"/>
            <exon e_start="27277" e_stop="27376"/>
            <exon e_start="28101" e_stop="28249"/>
            <exon e_start="29314" e_stop="29726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.997" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20943" e_stop="21114" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21115" i_stop="23415" i_length="2301"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23416" e_stop="23615" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.858" acc_prob="0.981">
            <gDNA_intron_boundary i_start="23616" i_stop="24014" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="24015" e_stop="24420" e_length="406"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24421" i_stop="24894" i_length="474"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24895" e_stop="25146" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="25147" i_stop="25234" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="25235" e_stop="25735" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25736" i_stop="26272" i_length="537"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26273" e_stop="26379" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.576">
            <gDNA_intron_boundary i_start="26380" i_stop="27276" i_length="897"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27277" e_stop="27376" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27377" i_stop="28100" i_length="724"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28101" e_stop="28249" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.931" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28250" i_stop="29313" i_length="1064"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="29314" e_stop="29726" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20962" stop="21114"/>
              <exon start="23416" stop="23615"/>
              <exon start="24015" stop="24107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24039" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24244" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24246" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24288" stop="24420"/>
              <exon start="24895" stop="25146"/>
              <exon start="25235" stop="25556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24925" stop="25146"/>
              <exon start="25235" stop="25549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25115" stop="25146"/>
              <exon start="25235" stop="25719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25243" stop="25682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25358" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25402" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25550" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25619" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25687" stop="25735"/>
              <exon start="26273" stop="26379"/>
              <exon start="27277" stop="27376"/>
              <exon start="28101" stop="28249"/>
              <exon start="29314" stop="29628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27281" stop="27376"/>
              <exon start="28101" stop="28208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28103" stop="28249"/>
              <exon start="29314" stop="29657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29314" stop="29726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29364" stop="29707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG : GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG : ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG : GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG : TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG : AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG : GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG : GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA : GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAA</gDNA_template>
            <first_frame> D  N  S  S  P  *  P  K  *  F  *  G  W  T  A  S  Q  T  R  I  H  K  Y  F  Y  *  *  W  E  Y  K  *  Q  C  W  S  R  L  *  R  N  A  S  F  Q  S  S  C  R  C  N  R  S  F  K  R  K   : G  S  L  Q  G  C  *  E  *  *  D  A  P  W  D  L  F  K  K  Q  *  C  S  G  A  S  Y  K  A  S  M  V  C  Q  L  Q  N  Y  G  Q  A  G  F  G  C  C  C  G  *  G  *  S  E  T  G  D  H  P  K  A  I  W  C  *  M  E  K  :  M  A  *  E  Y  S  *  L  V  H  L  K  A  T  L  V  G  S  S  Y  S  C  L  V  C  H  T  E  *  *  *  A  E  G  I  W  C  V  *  R  S  L  D  C  C  *  K  *  R  R  S  S  R  F  G  F  *  E  I  F  G  E  E  D  C  *  A  L  S  R  S  R  C  A  G  Y  L  V  F  V  W  S  F  P  I  I  C  I  G  V  A  R  *  Y  C  R  F  Q  N  I  L  S  N  F  S  S  *  N  R  T  *  Y  S  L  L  L  G  R  T  N  G  N  V  G  N  K  A  G  R  *  S  S  I  F  K   : G  L  F  A  S  N  D  P  R  C  S  W  A  *  D  V  E  V  V  G  K  C  Y  *  S  P  *  S  Y  *  W  N  H  T  *  W  S  S  *  E  I  K  G  G  *  P  R  R  K  R  I  *  E  G  K  R  G  T  G  K  G  L  S  *  W  Y  S  *  M  W  C  R  C  S  S  I  C  P  C  L  I  H  C  P   : V  R  *  D  Q  S  *  Y  S  E  S  G  W  L  S  S  M  V  *  Q  T  V  E  C  H  *  V  C  H  E  *  I  G  *  R  L  H  P  S  N  K  D  S  S  S  *  N  A  F  *  L  P  V  D  T  L  S  T  *  Q  G  H  S  K  N  C  L  I  P  G  I  L  *  F  L  R  C  S  N  S  S  I  F  L  V  A  V  S  V  V  *  C  V  Y  R  S  N  Q  A  I  L  H  W  *  *  S  R  I  C  I  C  K  K  I  C  S  G  H  L  V  A  L  L  R  *  R  V  E  I  T  P  S  I  Y  A  F  C  H  R  R  I  V  A  A  P  S  C  *  R  G  F  Y  K  E  R  I  Y  S  D  K  *  L  S  F  I  C  R   : E  L  E  *  *  *  C  G  N  *  D  G  K  G  V  I  H  C  *  R  T  E  V  E  E  G  I  V  A  S  K  G  E  I  C  K  :  A  R  S  V  C  A  L  P  D  K  *  Y  C  *  D  H  K  K  P  R  T  *  D  F  Y  F  S  Y  T  V  I  F  E   : G  L  K  *  H  *  C  S  S  N  S  M  A  D  R  S  G  G  *  I  N  H  S  F  S  R  G  *  G  D  Y  H  *  P  *  G  *  S  *  K  A  Q  K  E  E  R  G  D  E  K  :  A  I  *  N  L  N  Q  N  H  E  Y  L  W  L  Q  R  E  S  S  C  *  R  S  R  R  K  Y  I  K  T  W  C  P  Q  A  R  T  G  I  I  R  R  K  Y  *  A  S  H  T  S  N  G  G  T  I  I  G  V  I  S  S  C  C  A  L  I  V  Q  H  I  L  P  L  Y  L  F  S  F  F  K  M  F  *  V  K  F  C  C  Y  *  C  T  M  L  H  F  F  C  I  L  I  T  I  L  E  I  F  E  I  T  R  *  F  L  *  F  V  I  *  I  G  L  I  L  A  S  S  I  C  *  Y  F  A  L  D  H  I   </first_frame>
            <second_frame>  I  T  P  A  H  D  P  N  D  F  E  V  G  Q  R  H  K  L  E  F  I  S  I  F  T  D  D  G  N  I  N  S  N  A  G  P  D  F  E  G  M  P  R  F  K  A  R  V  A  V  T  E  A  L  K  E  K  :  G  L  Y  R  G  A  K  N  N  E  M  R  L  G  I  C  S  R  S  N  D  V  V  E  P  L  I  K  P  Q  W  F  V  N  C  K  I  M  A  K  Q  A  L  D  A  V  V  D  E  D  N  Q  K  L  E  I  I  P  K  Q  Y  G  A  E  W  R  R :   W  L  E  N  I  R  D  W  C  I  S  R  Q  L  W  W  G  H  R  I  P  A  W  Y  V  T  L  S  D  D  K  Q  K  E  F  G  V  S  D  D  H  W  I  V  A  R  N  E  E  E  A  R  D  L  A  S  R  K  F  S  G  K  K  I  V  E  L  S  Q  D  P  D  V  L  D  T  W  F  S  S  G  L  F  P  L  S  V  L  G  W  P  D  N  T  A  D  F  K  T  F  Y  P  T  S  V  L  E  T  G  H  D  I  L  F  F  W  V  A  R  M  V  M  L  G  I  K  L  G  G  D  L  P  F  S  K  :  V  Y  L  H  P  M  I  R  D  A  H  G  R  K  M  S  K  S  L  G  N  V  I  D  P  L  E  V  I  N  G  I  T  L  D  G  L  H  K  R  L  K  E  G  N  L  D  A  K  E  F  E  R  A  K  E  G  Q  A  K  D  F  P  D  G  I  P  E  C  G  A  D  A  L  R  F  A  L  V  S  Y  T  A  Q  :  S  D  K  I  N  L  D  I  Q  R  V  V  G  Y  R  Q  W  C  N  K  L  W  N  A  I  R  F  A  M  S  K  L  G  E  D  Y  T  P  P  T  K  I  V  P  H  E  M  P  F  S  C  Q  W  I  L  S  A  L  N  K  A  I  A  R  T  V  S  S  L  E  S  Y  D  F  S  D  A  A  T  A  V  Y  S  W  W  Q  F  Q  L  C  D  V  F  I  E  V  I  K  P  Y  F  T  G  D  N  P  E  F  V  S  A  R  R  S  A  Q  D  T  L  W  L  C  L  D  N  G  L  R  L  L  H  P  F  M  P  F  V  T  E  E  L  W  Q  R  L  P  A  S  G  D  S  I  K  K  E  S  I  V  I  S  D  Y  P  S  Y  V  E  :  S  W  N  N  D  N  V  E  T  E  M  E  K  V  S  S  I  V  R  G  L  R  S  K  R  A  L  L  P  P  K  E  R  F  A  R :   R  E  A  F  V  L  C  R  T  N  D  T  V  E  I  I  K  S  R  E  L  E  I  S  T  L  A  T  L  S  S  L  K  :  V  S  S  D  T  D  A  A  P  T  Q  W  L  T  E  V  V  D  E  S  I  T  V  F  L  E  D  K  G  T  I  I  N  P  E  A  E  V  E  R  L  K  K  K  R  E  E  T  R  K :   Q  Y  E  T  L  T  K  T  M  S  T  S  G  Y  K  E  K  V  R  A  N  V  H  E  E  N  T  L  K  L  G  A  L  K  Q  E  L  E  S  F  E  E  N  I  E  R  L  I  R  Q  M  E  A  L  *  L  E  *  F  H  H  V  V  P  *  L  F  N  T  F  C  P  Y  I  F  F  H  F  L  K  C  F  K  L  N  F  A  V  I  S  V  P  C  C  I  F  F  V  Y  *  L  R  F  L  K  F  L  R  *  Q  G  D  F  C  N  L  *  Y  E  *  A  *  Y  *  L  P  Q  F  A  N  I  L  P  L  T  T  *  </second_frame>
            <third_frame>   *  L  Q  P  M  T  Q  M  I  L  R  L  D  S  V  T  N  *  N  S  *  V  F  L  L  M  M  G  I  *  I  A  M  L  V  Q  T  L  K  E  C  L  V  S  K  L  V  S  L  *  Q  K  L  *  K  K  R :   V  S  T  G  V  L  R  I  M  R  C  A  L  G  F  V  Q  E  A  M  M  *  W  S  L  L  *  S  L  N  G  L  S  T  A  K  L  W  P  S  R  L  W  M  L  L  W  M  R  I  I  R  N  W  R  S  S  Q  S  N  M  V  L  N  G  E   : D  G  L  R  I  F  V  I  G  A  S  Q  G  N  F  G  G  V  I  V  F  L  L  G  M  S  H  *  V  M  I  S  R  R  N  L  V  C  L  T  I  T  G  L  L  L  E  M  K  K  K  L  E  I  W  L  L  G  N  F  R  G  R  R  L  L  S  S  L  K  I  Q  M  C  W  I  P  G  F  R  L  V  F  S  H  Y  L  Y  W  G  G  Q  I  I  L  Q  I  S  K  H  F  I  Q  L  Q  F  L  K  P  D  M  I  F  S  S  S  G  S  H  E  W  *  C  W  E  *  S  W  E  V  I  F  H  F  Q  R :   F  I  C  I  Q  *  S  A  M  L  M  G  V  R  C  R  S  R  W  E  M  L  L  I  P  L  K  L  L  M  E  S  H  L  M  V  F  I  R  D  *  R  R  V  T  *  T  Q  K  N  L  R  G  Q  K  R  D  R  Q  R  T  F  L  M  V  F  L  N  V  V  Q  M  L  F  D  L  P  L  S  H  T  L  P  S :   P  I  R  S  I  L  I  F  R  E  W  L  V  I  V  N  G  V  T  N  C  G  M  P  L  G  L  P  *  V  N  W  V  K  I  T  P  L  Q  Q  R  *  F  L  M  K  C  L  L  A  A  S  G  Y  S  Q  H  L  T  R  P  *  Q  E  L  S  H  P  W  N  L  M  I  S  P  M  Q  Q  Q  Q  Y  I  L  G  G  S  F  S  C  V  M  C  L  *  K  *  S  S  H  T  S  L  V  I  I  Q  N  L  Y  L  Q  E  D  L  L  R  T  P  C  G  F  A  *  I  T  G  *  D  Y  S  I  H  L  C  L  L  S  P  K  N  C  G  S  A  F  L  L  A  G  I  L  *  R  K  N  L  *  *  *  V  I  I  L  H  M  *  R :   A  G  I  M  I  M  W  K  L  R  W  K  R  C  H  P  L  L  E  D  *  G  R  R  G  H  C  C  L  Q  R  R  D  L  Q   : G  E  K  R  L  C  F  A  G  Q  M  I  L  L  R  S  *  K  A  A  N  L  R  F  L  L  *  L  H  C  H  L  *  R :   S  Q  V  T  L  M  Q  L  Q  L  N  G  *  Q  K  W  W  M  N  Q  S  Q  F  F  S  R  I  R  G  L  S  L  T  L  R  L  K  L  K  G  S  K  R  R  E  R  R  R  E   : S  N  M  K  P  *  P  K  P  *  V  P  L  A  T  K  R  K  F  V  L  T  F  T  K  K  I  H  *  N  L  V  P  S  S  K  N  W  N  H  S  K  K  I  L  S  V  S  Y  V  K  W  R  H  Y  N  W  S  N  F  I  M  L  C  L  D  C  S  T  H  S  A  P  I  S  F  F  I  F  *  N  V  L  S  *  I  L  L  L  L  V  Y  H  V  A  F  F  L  Y  T  N  Y  D  S  *  N  F  *  D  N  K  V  I  S  V  I  C  D  M  N  R  L  N  I  S  F  L  N  L  L  I  F  C  P  *  P  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20944" stop="21114"/>
                    <exon start="23416" stop="23615"/>
                    <exon start="24015" stop="24420"/>
                    <exon start="24895" stop="25146"/>
                    <exon start="25235" stop="25735"/>
                    <exon start="26273" stop="26379"/>
                    <exon start="27277" stop="27376"/>
                    <exon start="28101" stop="28249"/>
                    <exon start="29314" stop="29479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2049</number_coding_nucleotides>
                  <number_encoded_amino_acids>683</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITPAHDPNDFEVGQRHKLEFISIFTDDGNINSNAGPDFEGMPRFKARVAVTEALKEKGLYRGAKNNEMRLGICSRSNDVVEPLIKPQWFVNCKIMAKQALDAVVDEDNQKLEIIPKQYGAEWRRWLENIRDWCISRQLWWGHRIPAWYVTLSDDKQKEFGVSDDHWIVARNEEEARDLASRKFSGKKIVELSQDPDVLDTWFSSGLFPLSVLGWPDNTADFKTFYPTSVLETGHDILFFWVARMVMLGIKLGGDLPFSKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGITLDGLHKRLKEGNLDAKEFERAKEGQAKDFPDGIPECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMSKLGEDYTPPTKIVPHEMPFSCQWILSALNKAIARTVSSLESYDFSDAATAVYSWWQFQLCDVFIEVIKPYFTGDNPEFVSARRSAQDTLWLCLDNGLRLLHPFMPFVTEELWQRLPASGDSIKKESIVISDYPSYVESWNNDNVETEMEKVSSIVRGLRSKRALLPPKERFARREAFVLCRTNDTVEIIKSRELEISTLATLSSLKVSSDTDAAPTQWLTEVVDESITVFLEDKGTIINPEAEVERLKKKREETRKQYETLTKTMSTSGYKEKVRANVHEENTLKLGALKQELESFEENIERLIRQMEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="37183" PGL_stop="39680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37183" e_stop="37630"/>
            <exon e_start="38017" e_stop="38416"/>
            <exon e_start="38731" e_stop="39680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.908"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="0.990"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="37183" e_stop="37630" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37631" i_stop="38016" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="38017" e_stop="38416" e_length="400"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="38417" i_stop="38730" i_length="314"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="38731" e_stop="39680" e_length="950"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37183" stop="37630"/>
              <exon start="38017" stop="38164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37183" stop="37630"/>
              <exon start="38017" stop="38150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37212" stop="37616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37281" stop="37630"/>
              <exon start="38017" stop="38279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37451" stop="37630"/>
              <exon start="38017" stop="38416"/>
              <exon start="38731" stop="38850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38028" stop="38416"/>
              <exon start="38731" stop="39046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38028" stop="38416"/>
              <exon start="38731" stop="38797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38298" stop="38416"/>
              <exon start="38731" stop="39220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39086" stop="39621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39196" stop="39680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAAATTATACAGACCCCTTTTCTTCTCTTATCTCCCTCTTTAAAGATCTTAAAAACTTTGAGCAAAGCCAAGAAAAAAAAAATGTCTTTATAAGTTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAACTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG : ATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG : GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTACTAACCAAATACTCAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCCAACACATTTGGAGTAATGCACTCATCATCTTCTCCTTCATCAAACAACACAACACAAATCTTCAACAACAATGAAATTCATCAAGCTTTTGCAAAACAAACAGAGGATTACAATCAAACAGAGAATATACTCATCAATGGGTGTCCAAATATGAATTCATCTGTTAATTCTAAAGCAATCAATTTGGATCAGGCATTATTACAAACAGGTGGCATGCATAATCAAAATGTTCATTTCAACTTGCATAATAGTCTTACTAGAGATTTTTTAGGCATGGGAAATGAAGGGGGTCAGCCATTTTTGCCACAAGAATTAGCAAAGTTTGCTTCAATCAATTCAGCTATGGGGTTAAGCCATTACAGTACTGGTCACTAGTCCTACCAAGTTTTTTTTTTTTTTTTTGTATTAAAAAAAATAGAATAATGTAAAATTTGAATCTTATCTTATTATCAAGCTGGCATTTTTTTTT</gDNA_template>
            <first_frame> F  *  N  Y  T  D  P  F  S  S  L  I  S  L  F  K  D  L  K  N  F  E  Q  S  Q  E  K  K  N  V  F  I  S  F  K  F  L  F  F  T  *  C  F  S  R  F  K  L  *  C  L  L  L  C  F  L  F  F  W  N  N  L  K  N  K  N  K  N  L  *  V  L  S  S  F  Y  L  F  V  F  E  K  K  T  K  L  F  L  *  V  S  F  V  F  *  L  Q  Q  S  *  N  K  N  P  I  F  L  K  M  M  S  G  D  L  F  S  I  H  Q  Q  Q  H  Q  Q  V  L  V  E  Q  N  P  N  P  K  A  N  S  S  S  K  K  R  R  N  L  P  G  T  P   : D  P  D  A  E  V  I  A  I  S  P  K  T  L  M  A  T  N  R  F  I  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  N  K  Q  E  I  V  K  K  K  V  Y  I  C  P  E  K  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  S  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  K  Y  A  V  Q  S  D  W  K  A  H  T  K  T  C  G  T  R  E  Y  K  C  D  C  G  T  L  F  S  R :   K  D  S  F  I  T  H  R  A  F  C  D  A  L  A  E  E  S  A  R  I  T  T  T  N  N  L  N  F  N  Q  Q  Q  Q  Q  P  V  G  V  S  Q  I  G  T  S  F  A  Q  D  F  T  S  M  T  T  V  N  P  L  H  Q  H  Q  Q  K  P  R  L  S  L  W  L  N  Q  A  N  N  N  M  S  S  Q  S  S  N  L  F  G  L  P  D  H  H  M  V  Q  I  P  S  H  N  M  F  G  T  N  Q  I  L  N  P  T  P  T  T  T  T  T  T  N  T  N  T  N  T  N  T  P  A  T  P  N  P  P  I  P  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  S  T  K  S  T  P  N  Y  F  S  N  T  F  G  V  M  H  S  S  S  S  P  S  S  N  N  T  T  Q  I  F  N  N  N  E  I  H  Q  A  F  A  K  Q  T  E  D  Y  N  Q  T  E  N  I  L  I  N  G  C  P  N  M  N  S  S  V  N  S  K  A  I  N  L  D  Q  A  L  L  Q  T  G  G  M  H  N  Q  N  V  H  F  N  L  H  N  S  L  T  R  D  F  L  G  M  G  N  E  G  G  Q  P  F  L  P  Q  E  L  A  K  F  A  S  I  N  S  A  M  G  L  S  H  Y  S  T  G  H  *  S  Y  Q  V  F  F  F  F  F  V  L  K  K  I  E  *  C  K  I  *  I  L  S  Y  Y  Q  A  G  I  F  F  </first_frame>
            <second_frame>  F  E  I  I  Q  T  P  F  L  L  L  S  P  S  L  K  I  L  K  T  L  S  K  A  K  K  K  K  M  S  L  *  V  L  S  S  C  F  L  L  S  V  F  Q  D  S  N  F  S  V  F  Y  C  V  F  C  S  F  G  T  I  L  K  I  K  I  K  T  C  E  F  *  V  L  F  I  C  L  Y  L  K  K  K  L  S  F  F  C  E  L  A  L  F  S  S  S  N  K  A  K  T  K  T  P  F  S  *  K  *  C  L  E  I  C  F  Q  F  I  N  N  N  I  S  K  Y  *  L  N  K  T  L  T  L  K  L  I  L  L  L  R  K  E  E  I  F  Q  V  H  Q  :  I  Q  M  L  K  *  L  Q  Y  H  Q  K  H  *  W  L  Q  T  D  S  Y  V  K  S  A  T  K  V  F  R  G  I  K  T  C  N  S  I  E  E  D  I  I  F  H  G  S  *  S  K  G  T  N  K  K  *  L  R  R  K  F  T  Y  V  Q  K  R  V  V  Y  I  M  I  H  Q  E  H  L  V  T  L  L  V  *  R  S  I  L  A  E  N  M  V  R  K  N  G  S  V  K  S  V  Q  R  N  M  Q  F  N  L  I  G  K  L  I  L  R  L  V  V  L  E  S  I  N  V  T  V  E  H  S  F  P   : G  K  I  V  S  L  P  I  E  L  S  V  M  L  *  L  K  R  V  Q  E  S  L  L  P  T  I  *  T  S  T  S  N  N  N  N  L  L  E  F  H  K  L  G  Q  V  L  L  K  I  L  Q  V  *  Q  L  *  I  H  Y  I  S  I  S  K  N  Q  D  C  H  F  G  *  I  K  L  I  T  T  C  H  H  K  V  Q  I  F  L  A  Y  Q  I  I  I  W  S  K  S  H  L  I  T  C  L  V  L  T  K  Y  S  T  P  P  P  P  P  P  P  P  P  T  P  T  L  T  L  T  P  L  Q  P  Q  T  P  L  Y  Q  C  Q  Q  Q  P  F  Y  K  K  Q  H  K  W  G  Q  Q  K  A  L  Q  T  T  F  P  T  H  L  E  *  C  T  H  H  L  L  L  H  Q  T  T  Q  H  K  S  S  T  T  M  K  F  I  K  L  L  Q  N  K  Q  R  I  T  I  K  Q  R  I  Y  S  S  M  G  V  Q  I  *  I  H  L  L  I  L  K  Q  S  I  W  I  R  H  Y  Y  K  Q  V  A  C  I  I  K  M  F  I  S  T  C  I  I  V  L  L  E  I  F  *  A  W  E  M  K  G  V  S  H  F  C  H  K  N  *  Q  S  L  L  Q  S  I  Q  L  W  G  *  A  I  T  V  L  V  T  S  P  T  K  F  F  F  F  F  L  Y  *  K  K  *  N  N  V  K  F  E  S  Y  L  I  I  K  L  A  F  F  F </second_frame>
            <third_frame>   L  K  L  Y  R  P  L  F  F  S  Y  L  P  L  *  R  S  *  K  L  *  A  K  P  R  K  K  K  C  L  Y  K  F  *  V  L  V  F  Y  L  V  F  F  K  I  Q  T  L  V  S  F  I  V  F  F  V  L  L  E  Q  S  *  K  *  K  *  K  L  V  S  F  K  F  F  L  S  V  C  I  *  K  K  N  *  A  F  F  V  S  *  L  C  F  L  A  P  T  K  L  K  Q  K  P  H  F  L  K  N  D  V  W  R  F  V  F  N  S  S  T  T  T  S  A  S  T  S  *  T  K  P  *  P  *  S  *  F  F  F  *  E  K  K  K  S  S  R  Y  T  R :   S  R  C  *  S  D  C  N  I  T  K  N  T  D  G  Y  K  Q  I  H  M  *  N  L  Q  Q  R  F  S  E  G  S  K  L  A  T  P  *  K  R  T  *  S  S  M  E  V  E  A  K  E  Q  T  R  N  S  *  E  E  S  L  H  M  S  R  K  E  L  C  T  S  *  S  I  K  S  T  W  *  P  Y  W  Y  K  E  A  F  *  Q  K  T  W  *  E  K  M  E  V  *  K  V  F  K  E  I  C  S  S  I  *  L  E  S  S  Y  *  D  L  W  Y  *  R  V  *  M  *  L  W  N  T  L  F  Q  :  E  R  *  F  H  Y  P  *  S  F  L  *  C  F  S  *  R  E  C  K  N  H  Y  Y  Q  Q  F  E  L  Q  P  A  T  T  T  T  C  W  S  F  T  N  W  D  K  F  C  S  R  F  Y  K  Y  D  N  C  E  S  T  T  S  A  S  A  K  T  K  I  V  T  L  A  K  S  S  *  *  Q  H  V  I  T  K  F  K  S  F  W  L  T  R  S  S  Y  G  P  N  P  I  S  *  H  V  W  Y  *  P  N  T  Q  P  H  P  H  H  H  H  H  H  Q  H  Q  H  *  H  *  H  P  C  N  P  K  P  P  Y  T  N  V  S  N  S  P  S  T  K  S  S  T  N  G  V  N  K  K  H  S  K  L  L  F  Q  H  I  W  S  N  A  L  I  I  F  S  F  I  K  Q  H  N  T  N  L  Q  Q  Q  *  N  S  S  S  F  C  K  T  N  R  G  L  Q  S  N  R  E  Y  T  H  Q  W  V  S  K  Y  E  F  I  C  *  F  *  S  N  Q  F  G  S  G  I  I  T  N  R  W  H  A  *  S  K  C  S  F  Q  L  A  *  *  S  Y  *  R  F  F  R  H  G  K  *  R  G  S  A  I  F  A  T  R  I  S  K  V  C  F  N  Q  F  S  Y  G  V  K  P  L  Q  Y  W  S  L  V  L  P  S  F  F  F  F  F  C  I  K  K  N  R  I  M  *  N  L  N  L  I  L  L  S  S  W  H  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37483" stop="37630"/>
                    <exon start="38017" stop="38416"/>
                    <exon start="38731" stop="39586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNPIFLKMMSGDLFSIHQQQHQQVLVEQNPNPKANSSSKKRRNLPGTPDPDAEVIAISPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKQEIVKKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTTNNLNFNQQQQQPVGVSQIGTSFAQDFTSMTTVNPLHQHQQKPRLSLWLNQANNNMSSQSSNLFGLPDHHMVQIPSHNMFGTNQILNPTPTTTTTTNTNTNTNTPATPNPPIPMSATALLQKAAQMGSTKSTPNYFSNTFGVMHSSSSPSSNNTTQIFNNNEIHQAFAKQTEDYNQTENILINGCPNMNSSVNSKAINLDQALLQTGGMHNQNVHFNLHNSLTRDFLGMGNEGGQPFLPQELAKFASINSAMGLSHYSTGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="39653" PGL_stop="39110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39653" e_stop="39110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="39653" e_stop="39110" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39653" stop="39110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGATTCAAATTTTACATTATTCTATTTTTTTTAATACAAAAAAAAAAAAAAAAACTTGGTAGGACTAGTGACCAGTACTGTAATGGCTTAACCCCATAGCTGAATTGATTGAAGCAAACTTTGCTAATTCTTGTGGCAAAAATGGCTGACCCCCTTCATTTCCCATGCCTAAAAAATCTCTAGTAAGACTATTATGCAAGTTGAAATGAACATTTTGATTATGCATGCCACCTGTTTGTAATAATGCCTGATCCAAATTGATTGCTTTAGAATTAACAGATGAATTCATATTTGGACACCCATTGATGAGTATATTCTCTGTTTGATTGTAATCCTCTGTTTGTTTTGCAAAAGCTTGATGAATTTCATTGTTGTTGAAGATTTGTGTTGTGTTGTTTGATGAAGGAGAAGATGATGAGTGCATTACTCCAAATGTGTTGGAAAAGTAGTTTGGAGTGCTTTTTGTTGACCCCATTTGTGCTGCTTTTTGTAGAAGGGCTGTTGCTGACATTGGTATAGGGGGGTTTGGGGTTGCAGGGGT</gDNA_template>
            <first_frame> I  R  F  K  F  Y  I  I  L  F  F  L  I  Q  K  K  K  K  K  L  G  R  T  S  D  Q  Y  C  N  G  L  T  P  *  L  N  *  L  K  Q  T  L  L  I  L  V  A  K  M  A  D  P  L  H  F  P  C  L  K  N  L  *  *  D  Y  Y  A  S  *  N  E  H  F  D  Y  A  C  H  L  F  V  I  M  P  D  P  N  *  L  L  *  N  *  Q  M  N  S  Y  L  D  T  H  *  *  V  Y  S  L  F  D  C  N  P  L  F  V  L  Q  K  L  D  E  F  H  C  C  *  R  F  V  L  C  C  L  M  K  E  K  M  M  S  A  L  L  Q  M  C  W  K  S  S  L  E  C  F  L  L  T  P  F  V  L  L  F  V  E  G  L  L  L  T  L  V  *  G  G  L  G  L  Q  G  </first_frame>
            <second_frame>  *  D  S  N  F  T  L  F  Y  F  F  *  Y  K  K  K  K  K  N  L  V  G  L  V  T  S  T  V  M  A  *  P  H  S  *  I  D  *  S  K  L  C  *  F  L  W  Q  K  W  L  T  P  F  I  S  H  A  *  K  I  S  S  K  T  I  M  Q  V  E  M  N  I  L  I  M  H  A  T  C  L  *  *  C  L  I  Q  I  D  C  F  R  I  N  R  *  I  H  I  W  T  P  I  D  E  Y  I  L  C  L  I  V  I  L  C  L  F  C  K  S  L  M  N  F  I  V  V  E  D  L  C  C  V  V  *  *  R  R  R  *  *  V  H  Y  S  K  C  V  G  K  V  V  W  S  A  F  C  *  P  H  L  C  C  F  L  *  K  G  C  C  *  H  W  Y  R  G  V  W  G  C  R  G </second_frame>
            <third_frame>   K  I  Q  I  L  H  Y  S  I  F  F  N  T  K  K  K  K  K  T  W  *  D  *  *  P  V  L  *  W  L  N  P  I  A  E  L  I  E  A  N  F  A  N  S  C  G  K  N  G  *  P  P  S  F  P  M  P  K  K  S  L  V  R  L  L  C  K  L  K  *  T  F  *  L  C  M  P  P  V  C  N  N  A  *  S  K  L  I  A  L  E  L  T  D  E  F  I  F  G  H  P  L  M  S  I  F  S  V  *  L  *  S  S  V  C  F  A  K  A  *  *  I  S  L  L  L  K  I  C  V  V  L  F  D  E  G  E  D  D  E  C  I  T  P  N  V  L  E  K  *  F  G  V  L  F  V  D  P  I  C  A  A  F  C  R  R  A  V  A  D  I  G  I  G  G  F  G  V  A  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0072G22.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="44133" PGL_stop="45369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44133" e_stop="44449"/>
            <exon e_start="44878" e_stop="45369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44133" e_stop="44449" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44450" i_stop="44877" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44878" e_stop="45369" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44133" stop="44449"/>
              <exon start="44878" stop="45232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44148" stop="44449"/>
              <exon start="44878" stop="45277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44152" stop="44449"/>
              <exon start="44878" stop="45187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44171" stop="44449"/>
              <exon start="44878" stop="45317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44178" stop="44449"/>
              <exon start="44878" stop="45327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44178" stop="44449"/>
              <exon start="44878" stop="45189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44449"/>
              <exon start="44878" stop="45057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44181" stop="44449"/>
              <exon start="44878" stop="45369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44182" stop="44449"/>
              <exon start="44878" stop="45369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44449"/>
              <exon start="44878" stop="45071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44272" stop="44449"/>
              <exon start="44878" stop="45369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44305" stop="44449"/>
              <exon start="44878" stop="45369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG : GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAA</gDNA_template>
            <first_frame> T  K  N  I  L  S  N  Y  P  F  I  F  H  T  Q  R  E  K  A  Q  R  K  W  R  L  L  L  F  F  Y  T  P  R  P  P  L  S  T  M  L  S  F  R  R  T  P  F  D  C  R  S  E  I  P  R  S  G  R  P  I  N  *  R  *  K  L  Q  Q  Q  Y  *  W  I  K  V  K  L  K  K  L  I  V  *  K  Q  I  T  S  K  R  L  C  R  C  *  R  K  N  S  V  T  P  I  F  F  R :   F  R  R  S  K  R  L  W  *  I  V  V  *  E  M  L  H  K  I  P  R  V  W  M  Q  Q  *  M  I  W  P  *  L  Q  G  K  G  L  *  R  L  G  L  R  M  L  L  L  L  S  K  L  E  K  V  N  R  L  E  L  L  L  H  F  E  G  M  *  C  I  R  S  L  T  G  *  L  I  W  G  F  L  E  R  G  T  F  K  A  *  T  P  I  A  L  M  V  M  E  I  I  A  L  A  F  V  N  R  V  S  S  Q  S  *  V  M  M  L  L  V  S  Q  E  G  W  M  F  A  *  Q  Q  Q  L  R  Q  I  K  R  H  T  D  C  W  L  S  W  V  C  H  L  E  K  V  L  V  D  R  Q  L  L  R  K  R   </first_frame>
            <second_frame>  Q  R  T  S  Y  P  I  T  L  L  F  F  T  H  R  E  K  K  L  R  E  N  G  G  F  S  S  S  S  T  L  H  G  L  L  F  L  Q  C  *  V  S  G  V  L  R  S  I  A  G  R  K  Y  Q  G  P  V  V  Q  *  I  D  G  E  S  F  S  N  S  T  S  G  *  K  *  S  *  K  S  *  S  S  E  N  K  L  P  R  K  D  C  A  V  V  E  G  R  I  Q  L  H  Q  Y  S  S   : G  S  E  G  R  K  D  C  G  K  L  W  Y  R  R  C  C  T  K  F  Q  G  F  G  C  S  N  E  *  F  G  L  N  Y  R  A  K  A  C  E  D  *  G  *  E  C  Y  C  Y  F  Q  N  *  R  R  S  T  A  W  N  C  C  Y  T  S  R  E  C  N  V  F  V  P  *  P  V  N  *  F  G  A  S  S  N  E  G  L  S  R  R  K  P  Q  *  L  *  W  S  W  K  L  *  H  W  L  S  *  T  E  C  L  P  R  V  K  L  *  C  S  W  *  A  K  R  D  G  C  L  H  N  N  N  S  *  D  R  *  R  G  T  Q  I  V  G  S  H  G  Y  A  I  *  R  R  F  W  W  T  D  N  F  Y  E  K  E  </second_frame>
            <third_frame>   K  E  H  L  I  Q  L  P  F  Y  F  S  H  T  E  R  K  S  S  E  K  M  A  A  S  P  L  L  L  H  S  T  A  S  S  F  Y  N  A  E  F  P  A  Y  S  V  R  L  P  V  G  N  T  K  V  R  S  S  N  K  L  T  V  K  A  S  A  T  V  L  V  D  K  S  E  A  E  K  V  N  R  L  K  T  N  Y  L  E  K  I  V  P  L  L  K  E  E  F  S  Y  T  N  I  L  Q  :  V  P  K  V  E  K  I  V  V  N  C  G  I  G  D  A  A  Q  N  S  K  G  L  D  A  A  M  N  D  L  A  L  I  T  G  Q  R  P  V  K  T  R  A  K  N  A  I  A  T  F  K  I  R  E  G  Q  P  L  G  I  A  V  T  L  R  G  N  V  M  Y  S  F  L  D  R  L  I  N  L  G  L  P  R  T  R  D  F  Q  G  V  N  P  N  S  F  D  G  H  G  N  Y  S  I  G  F  R  E  Q  S  V  F  P  E  L  S  Y  D  A  L  G  K  P  R  G  M  D  V  C  I  T  T  T  A  E  T  D  K  E  A  H  R  L  L  A  L  M  G  M  P  F  R  E  G  S  G  G  Q  T  T  F  T  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44135" stop="44449"/>
                    <exon start="44878" stop="45369"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHLIQLPFYFSHTERKSSEKMAASPLLLHSTASSFYNAEFPAYSVRLPVGNTKVRSSNKLTVKASATVLVDKSEAEKVNRLKTNYLEKIVPLLKEEFSYTNILQVPKVEKIVVNCGIGDAAQNSKGLDAAMNDLALITGQRPVKTRAKNAIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGFREQSVFPELSYDALGKPRGMDVCITTTAETDKEAHRLLALMGMPFREGSGGQTTFTKKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 124 chains have been computed
$ 
$ memory statistics:
$ 134536 bytes spliced alignments in total
$ 63 spliced alignments have been stored
$ 2135 bytes was the average size of a spliced alignment
$ 13160 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2632 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 141 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 08:30:24
-->
