<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 14:42:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213196" ref_strand="+" ref_description="SGN-E213196 [cLEC-72-H19]">
      <seq>tatatgagagctatttctgaactatttttagtgaaaatcttcccatttgttagaaataaaaaagtttcaagaaagcctattttttttcctattagaaatattaatatgtctgaatcaaatcaatatgattcttgttttgatagaccaagattggttattaagaaagttttggctaaacctcaaagtgaagggaatggagctgttgttagaagaagcattggaaggcatgaattgaggaatcttgatcctttcctaatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaattaatactggtgatgtgcagtggatgacagcaggaagaggtataattcattcagaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctctcttctaaggacaaaatgattgagccaaggtatcaagaactgctgaaagaagacataccaagagcagagaatgatggtgttaaagtaaaagttatagcaggtgaagcaatgggagtccaatccccggtttacacacaaacgcctacaatgtacctcgatttcacccctacaccaacagcttactatcatncagccatccctgaatcttggaaacgcttcgtatatatagttgaaaggagaagtgtcttcggaattccgagntcaggtcctgtatcagctcaccattgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="846" stop="3988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1146" g_stop="1369" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1370" i_stop="1773" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1774" g_stop="1823" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="274" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1824" i_stop="2057" i_length="234">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2058" g_stop="2125" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="342" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2126" i_stop="2521" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2522" g_stop="2584" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="405" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2585" i_stop="2776" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2777" g_stop="2880" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="509" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2881" i_stop="3414" i_length="534">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3415" g_stop="3688" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="783" r_length="274" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E213196" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1146" e_stop="1369"/>
          <exon e_start="1774" e_stop="1823"/>
          <exon e_start="2058" e_stop="2125"/>
          <exon e_start="2522" e_stop="2584"/>
          <exon e_start="2777" e_stop="2880"/>
          <exon e_start="3415" e_stop="3688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAGGTAATAAAATTTGGGATTTTTATATTTTTCACATTTTCTTTTTGTTGATTTTAAATTTTGTTTCTAAATTTTATGACTTTTTTGTCATTTGGGTATTTTTCATTTTGGACAGTAAAAGAAGTAACTTTAATAGGAAATTGTGTTTTGAAACTTTGACCTTGATGTGTTTTCTTGGTTTCCATATTGTAAAGTCTCTGTCTTTACGTGGTCTCGAATAAAGTTAGCTAGTACCTGTGTTATTAGTGCGAGTTGATAAATATCTCGTGTAATTAGTTAAGGTGCGGAAAAGCCGCCAATACACTACAAATATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTTGTTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCTACTTTTATTGTGGGGCGGGGGGTTAGGAGTATTACTAGTATGCAGTATAAAGATTAATCATTCACTTTTCTGTTTCTGCTGTGTTTTGCTAAGCTTAATCATTCACTTTTGACTAACTTCTCAAAATCAAGATTTAGTTTGAACCAATATTTTCCCATGTTCAAGTTTATAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGATATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCA-CCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTG-AAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTG</genome_strand>
        <mrna_strand>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCCTAC-ACCAACAGCTTACTATCATNCAGCCATCCCTGAATCTTGGAAACGCTTCGTATATATAGTTGAAAGGAGAA-GTGTCTTCGGAATTCCGAGNTCAGGTCCTGTATCAGCTCACCATTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715395" ref_strand="+" ref_description="SGN-E715395 [FB14AF06]">
      <seq>tctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgtttcttgattccccttaagttttacaagaatggttcattaaattatttttgctggtcatactgtttattgatttgttaatggataaagtacttttgtaatggtcaggaacttaatatttatattctatatggcagctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9057" stop="5017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8757" g_stop="8387" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5317" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="842" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E715395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8757" e_stop="8387"/>
          <exon e_start="5787" e_stop="5317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAA</genome_strand>
        <mrna_strand>TCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344534" ref_strand="+" ref_description="SGN-E344534 [cTOF-14-J16]">
      <seq>tttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9070" stop="5200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8770" g_stop="8387" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5500" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="672" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E344534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8770" e_stop="8387"/>
          <exon e_start="5787" e_stop="5500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAAC</genome_strand>
        <mrna_strand>TTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348365" ref_strand="+" ref_description="SGN-E348365 [cTOF-27-I5]">
      <seq>tttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacanacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaagggttttgaattccgattcttataaagcccgattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9061" stop="5202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8761" g_stop="8387" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5502" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="662" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E348365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8761" e_stop="8387"/>
          <exon e_start="5787" e_stop="5502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGG-TTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAA</genome_strand>
        <mrna_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACANACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGGTTTTGAATTCCGATTCTTATAAAGCCCGATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205434" ref_strand="+" ref_description="SGN-E205434 [cLEC-28-L19]">
      <seq>ttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9101" stop="5365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8801" g_stop="8387" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5665" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="538" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E205434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8801" e_stop="8387"/>
          <exon e_start="5787" e_stop="5665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGG</genome_strand>
        <mrna_strand>TTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204292" ref_strand="+" ref_description="SGN-E204292 [cLEC-13-N22]">
      <seq>cttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9102" stop="5409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8802" g_stop="8387" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5709" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="495" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E204292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8802" e_stop="8387"/>
          <exon e_start="5787" e_stop="5709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGA</genome_strand>
        <mrna_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311658" ref_strand="+" ref_description="SGN-E311658 [cLEZ-9-F17]">
      <seq>tttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9061" stop="5428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8761" g_stop="8387" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5787" g_stop="5728" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="435" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E311658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8761" e_stop="8387"/>
          <exon e_start="5787" e_stop="5728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATA</genome_strand>
        <mrna_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375387" ref_strand="+" ref_description="SGN-E375387 [TUS-15-H2]">
      <seq>cttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccacactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgggacttctgcttattatcgtggtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9102" stop="8165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8802" g_stop="8465" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E375387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8802" e_stop="8465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTT</genome_strand>
        <mrna_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCACACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGGGACTTCTGCTTATTATCGTGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206630" ref_strand="+" ref_description="SGN-E206630 [cLEC-31-J1]">
      <seq>accccttcccccctctctctctctctagatcaccagattgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagaagatgagggtgaggagtatcttttcaagactgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcacacccacactcttgaaattgatggaaaagaagctaaagctcagatttgggatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9106" stop="8213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8806" g_stop="8513" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E206630" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8806" e_stop="8513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTG</genome_strand>
        <mrna_strand>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGATTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGAAGATGAGGGTGAGGAGTATCTTTTCAAGACTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCACACCCACACTCTTGAAATTGATGGAAAAGAAGCTAAAGCTCAGATTTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261008" ref_strand="+" ref_description="SGN-E261008 [cLEG-55-A14]">
      <seq>ccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtatatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="9074" stop="8287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8774" g_stop="8587" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E261008" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8774" e_stop="8587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTAT</genome_strand>
        <mrna_strand>CCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTATATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744760" ref_strand="+" ref_description="SGN-E744760 [GI|6580546]">
      <seq>gcagtatggtccatttgttatgaacactaagagtgagattatgcaggcttatcaagattatcaacttggaaagaatggatttgaaagatcaagacaatggtattctaaatgagtaaacagagttacatcttatacttcatgaacattaagtgcaatagtcattagttttcttaatgatttcaagttgtgttagtctttgctttcatttgaaatgttatgtgtgttgagtgatgtatattagtgttcatctccttcatttgttaaagattgtatttatagtaatttatgttagagttcttgaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="10584" stop="9678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10284" g_stop="9971" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E744760" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10284" e_stop="9971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAGC</genome_strand>
        <mrna_strand>GCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTATATTAGTGTTCATCTCCTTCATTTGTTAAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747543" ref_strand="+" ref_description="SGN-E747543 [GI|6651244]">
      <seq>taaaaacatcaaaatgtctatgtcctctatttttagtagaccaagattggttgttaagaaagttttggctagagctcaaaatgaaggtgatggtgctattgttagaagaagcattggaaggcctgaattgcagaatcttgatccattcctcatgttagatgagtttagtgtttcacaacctgctggatttcctgaccatccacacagaggttttgagactgtcacttatatgttgcagggagcttttactcatcaagattttgctggtcacaagggtacaatcaggactggtgatgtgcagtggatgacagcaggaagaggtatagttcattcagaaatgcctgctggaccaggtactcaaaaggggttgcagctttggataaatttatcttctaaggacaaaatgattgagccaaggtatcaagaattgctacaccaagacataccaaaggctgaaaaagatggtgtttcggttactattttagcaggggaatccatggggaaaaaatcacaagttttcacgcgaacgcctacaatgtaccttgatttcaccctaaaaccaggttctgagcatcatcaaccgatccccgagacctggaatgccttcctctacatagttgaaggagagggagcgtttggttcttcggattcaaccactacaccagctcaccattgcttggttttaggccctggtgaaggtctaagtgtgtggaacaaatcttcaaagccattgaggtttgttctgataggagggcaaccgattaacgagcctgtcgtgcagtatggtccatttgttatgaacactaagagtgagattatgcaggcttatcaagattatcaacttggaaagaatggatttgaaagatcaagacaatggtattctaaatgagtaaacagagttacatcttatacttcatgaacattaagtgcaatagtcattagttttcttaatgatttcaagttgtgttagtctttgctttcatttgaaatgttatgtgtgttgagtgatgtatattagtgttcatctccttcatttgttaaagattgtatttatagtaatttatgttagagttcttgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="12343" stop="9678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12043" g_stop="11924" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11923" i_stop="11730" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11729" g_stop="11680" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="170" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11679" i_stop="11590" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11589" g_stop="11522" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="238" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11521" i_stop="11338" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11337" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="301" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11274" i_stop="11070" i_length="205">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11069" g_stop="10966" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="405" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10965" i_stop="10657" i_length="309">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10656" g_stop="9972" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="1090" r_length="685" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E747543" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12043" e_stop="11924"/>
          <exon e_start="11729" e_stop="11680"/>
          <exon e_start="11589" e_stop="11522"/>
          <exon e_start="11337" e_stop="11275"/>
          <exon e_start="11069" e_stop="10966"/>
          <exon e_start="10656" e_stop="9972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAGGTAACTATGTTTCTATACTTCTTTCCTTTTTCTTGATTTTTTATCATCGTTGTGATAATCGAGAAATCTCTGACGATCATAAATATGTTGGTGAATAATAATCACATCTTTTTATTTTTCTCCAAATTAGATACCATATATCAGAAACACGACTCGAATACTGATTGTTTTTTTTTTATATAATATTTGATCAGGCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTGGTAATTTTTTTTTCTCTTAGTATATTATTTTGTGGATTTTATTTTGATTTTGACTTATTAAAAAGCTATGTTATTTTTGGCTTCTTGCAGTTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAGGTAAAAATTCATTTTAATTTCTTTTTTTTTTGGGTGAAAGTTTAACTTTTGTACACCGACCAAAAAAATATTGATATATACTATTAGGTATCGCGATGTATATAAGTTAAACTCTGTATTTGGTGTATGGATTATGGAGATTGAAAATTCTAATGTGATTTAATTTTGTGGTGTTTAATTTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAGGTAATAAGTTTGCTCACAACACCACTATCAACTTAAGTTACGTACACTGACAGTGTGAAGATTTTTAATAATATCAGTGTAATATAACATAACATGTGATAGTTACCTCCTAAAGTGGGACTTCATGACGCGATAGAATATCGAATTTATGAAATTTAAAGTGTGTTTTATGATTTTATTTTTTTTCCCGTTTGGTTTAATGCAGTGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAATGTAAGTTACATTGATTCAATTTTGACTTTAGTGTTTGAAAAATCTAGTATTTCATTTTTTAACATATTCCTATAAAACATGTACTCTGATCAAAATTCATAAAACTTAAGCGTTTAAGATTTAATATATATGTATTAAAGTATGACTTGACCTATATGAGTCAGACAAAGGGTGTTCGAGTAACCAGTCTTCAATCTGTGTGGCTAAAACATGCTTTAGTCACAACAACTCATGACCCTGTTACTTCACGAGCCTTCATTGCCCCGTTTTTTGTAACTTCACTCATTTTGTCCATCCATATTGATGCAGGATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAG</genome_strand>
        <mrna_strand>TAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG..................................................................................................................................................................................................GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG..........................................................................................TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG........................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG.............................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT.....................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTATATTAGTGTTCATCTCCTTCATTTGTTAAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358232" ref_strand="+" ref_description="SGN-E358232 [cLHT-23-J4]">
      <seq>gttgaaacaaacattaaaaacatcaaaatgtctatgtcctctatttttaatagaccaagattggttgttaagaaagttttggctagggctcaaaataaaggtgatggtgctattgttagaagaagcattggaagacctgaattgcagaatcttgatccattcctcatgttagatgagtttagtgtttcacaacctgctggatttcctgaccatccacacagaggttttgagactgtcacttatatgttgcagggagcttttactcatcaagattttgctggtcacaagggtacaatcaggactggtgatgtgcagtggatgacagcaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="12357" stop="10753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12057" g_stop="11924" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11923" i_stop="11730" i_length="194">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11729" g_stop="11680" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="184" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11679" i_stop="11590" i_length="90">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11589" g_stop="11522" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="252" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11521" i_stop="11338" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11337" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="315" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11274" i_stop="11070" i_length="205">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11069" g_stop="11053" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="332" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E358232" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12057" e_stop="11924"/>
          <exon e_start="11729" e_stop="11680"/>
          <exon e_start="11589" e_stop="11522"/>
          <exon e_start="11337" e_stop="11275"/>
          <exon e_start="11069" e_stop="11053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAGGTAACTATGTTTCTATACTTCTTTCCTTTTTCTTGATTTTTTATCATCGTTGTGATAATCGAGAAATCTCTGACGATCATAAATATGTTGGTGAATAATAATCACATCTTTTTATTTTTCTCCAAATTAGATACCATATATCAGAAACACGACTCGAATACTGATTGTTTTTTTTTTATATAATATTTGATCAGGCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTGGTAATTTTTTTTTCTCTTAGTATATTATTTTGTGGATTTTATTTTGATTTTGACTTATTAAAAAGCTATGTTATTTTTGGCTTCTTGCAGTTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAGGTAAAAATTCATTTTAATTTCTTTTTTTTTTGGGTGAAAGTTTAACTTTTGTACACCGACCAAAAAAATATTGATATATACTATTAGGTATCGCGATGTATATAAGTTAAACTCTGTATTTGGTGTATGGATTATGGAGATTGAAAATTCTAATGTGATTTAATTTTGTGGTGTTTAATTTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAGGTAATAAGTTTGCTCACAACACCACTATCAACTTAAGTTACGTACACTGACAGTGTGAAGATTTTTAATAATATCAGTGTAATATAACATAACATGTGATAGTTACCTCCTAAAGTGGGACTTCATGACGCGATAGAATATCGAATTTATGAAATTTAAAGTGTGTTTTATGATTTTATTTTTTTTCCCGTTTGGTTTAATGCAGTGGATGACAGCAGGAAG</genome_strand>
        <mrna_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAATAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGGGCTCAAAATAAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG..................................................................................................................................................................................................ACCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG..........................................................................................TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG........................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG.............................................................................................................................................................................................................TGGATGACAGCAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341315" ref_strand="+" ref_description="SGN-E341315 [cTOE-22-P23]">
      <seq>ttcaatcaacaatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaagggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13517" stop="15918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13817" g_stop="14228" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="15618" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="432" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E341315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13817" e_stop="14228"/>
          <exon e_start="15599" e_stop="15618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTC</genome_strand>
        <mrna_strand>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAAGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724234" ref_strand="+" ref_description="SGN-E724234 [FC23CA01]">
      <seq>gaatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13527" stop="16248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13826" g_stop="14228" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="15948" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="753" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E724234" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13826" e_stop="14228"/>
          <exon e_start="15599" e_stop="15948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAG</genome_strand>
        <mrna_strand>GAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745841" ref_strand="+" ref_description="SGN-E745841 [GI|47105029]">
      <seq>gatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccgggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtcattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgtcgaagttaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggctgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctctgttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcgctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13528" stop="17045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13827" g_stop="14228" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="16743" g_length="1145"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="1548" r_length="1146" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1552" polyA_stop="1567"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E745841" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1547</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13827" e_stop="14228"/>
          <exon e_start="15599" e_stop="16743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC--TTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCG</genome_strand>
        <mrna_strand>GATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCC-GGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTCATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTCGAAGTTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCTGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275986" ref_strand="+" ref_description="SGN-E275986 [cLEN-12-H4]">
      <seq>taaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatagggtagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13544" stop="16107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="14228" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="15807" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="594" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E275986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="14228"/>
          <exon e_start="15599" e_stop="15807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCC</genome_strand>
        <mrna_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGTAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276087" ref_strand="+" ref_description="SGN-E276087 [cLEN-12-F1]">
      <seq>taaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatagggtagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13544" stop="16104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="14228" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="15804" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="591" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E276087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="14228"/>
          <exon e_start="15599" e_stop="15804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAA</genome_strand>
        <mrna_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGTAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228220" ref_strand="+" ref_description="SGN-E228220 [cLED-2-O18]">
      <seq>taaactaaatagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaagggattgtttgtttgagcattacagtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13544" stop="14441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="14141" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E228220" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="14141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATG</genome_strand>
        <mrna_strand>TAAACTAAATAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAAGGGATTGTTTGTTTGAGCATTACAGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690897" ref_strand="+" ref_description="SGN-E690897 [LH_Ea04L07]">
      <seq>cattaaaaagatcaaatttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttangccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaagtcatttttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13547" stop="16372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13846" g_stop="14228" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="16072" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="857" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E690897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13846" e_stop="14228"/>
          <exon e_start="15599" e_stop="16072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACA</genome_strand>
        <mrna_strand>CATTAAAAAGATCAAATTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTANGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAGTCATTTTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285333" ref_strand="+" ref_description="SGN-E285333 [cLER-20-K12]">
      <seq>aaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtattctgactcatgccacagtggtggcctcattgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13552" stop="15993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13852" g_stop="14228" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="15693" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="473" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E285333" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13852" e_stop="14228"/>
          <exon e_start="15599" e_stop="15693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTA-TCTGACTCATGCCACAGTGGTGGCCTCATTGACAAA</genome_strand>
        <mrna_strand>AAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATTCTGACTCATGCCACAGTGGTGGCCTCATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699233" ref_strand="+" ref_description="SGN-E699233 [FA09AH02]">
      <seq>aaaaatttcaatggcgaaaaaacctttattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaaccgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcacgggattgtttgtttgtgcattacagtggacatggaactaggttacctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13573" stop="14460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13873" g_stop="14160" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E699233" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13873" e_stop="14160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGA</genome_strand>
        <mrna_strand>AAAAATTTCAATGGCGAAAAAACCTTTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAACCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCACGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746750" ref_strand="+" ref_description="SGN-E746750 [GI|23343884]">
      <seq>attggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaggcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgcaaggctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctatactgcgatgatcatcacgttgatgctccttttgtttgttgattcaactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctctttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="13604" stop="91804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13904" g_stop="14228" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15599" g_stop="16800" g_length="1202"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="1526" r_length="1201" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16801" i_stop="16869" i_length="69">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.584" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16870" g_stop="16883" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1527" r_stop="1540" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E746750" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1541</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13904" e_stop="14228"/>
          <exon e_start="15599" e_stop="16800"/>
          <exon e_start="16870" e_stop="16883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAACATAAATATTGACCTTTGTCTGGCGAAACTAGGGAACAGAACGAAA</genome_strand>
        <mrna_strand>ATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAGGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGCAAGGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTATACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCAACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC-TTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATAAAAAAAAA.....................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341713" ref_strand="+" ref_description="SGN-E341713 [cTOF-9-O20]">
      <seq>accttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctcctttttgtttgttgattctactgtgctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15518" stop="16819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15818" g_stop="16519" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E341713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15818" e_stop="16519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCC-TTTTGTTTGTTGATTCTACTGTGCTATGC</genome_strand>
        <mrna_strand>ACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTTGTTTGTTGATTCTACTGTGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329560" ref_strand="+" ref_description="SGN-E329560 [cTOD-11-D19]">
      <seq>tcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15537" stop="16656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15837" g_stop="16356" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E329560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15837" e_stop="16356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATT</genome_strand>
        <mrna_strand>TCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705305" ref_strand="+" ref_description="SGN-E705305 [FA26DA05]">
      <seq>cggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagtaaaatctggagaacttgtttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15594" stop="17092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15894" g_stop="16799" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E705305" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15894" e_stop="16799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATG</genome_strand>
        <mrna_strand>CGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTAAAATCTGGAGAACTTGTTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713755" ref_strand="+" ref_description="SGN-E713755 [FB09CC06]">
      <seq>aagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15732" stop="17097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16032" g_stop="16797" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E713755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16032" e_stop="16797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</genome_strand>
        <mrna_strand>AAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694737" ref_strand="+" ref_description="SGN-E694737 [LH_Ea04L07](-)">
      <seq>aagaaattcatgaaagtcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttttgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggttttccagacagtggcatttttgtcagtgggtgccaaacagaccaaacatttgcggatgcaacccctgcaggcggagagttttatggtgctttaagcaacgcaattcaggaaatcctggctgaatcagatggtccagtccccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacccaacgcccaggcctttactgcgatgatcatcacgttgatgctccttttgtttgttgattttactgtgctatgccttctcgagtagctgttgaaatacgattgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttgctttggtgttgcagtagaactgttttccatcatgtgaatgtgtactatttggctctgtttcttttttcttttaaatttggtcagagaataaggtattaaagaaccccagttttcggtactgttttggaaagttgaaagttaaatctggagaacttgttttgtatctttatagggttatattttaatgcccctggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15745" stop="17122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16045" g_stop="16787" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="799"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E694737" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16045" e_stop="16787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCT-TTT-TTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTT</genome_strand>
        <mrna_strand>AAGAAATTCATGAAAGTCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTTTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTTTTCCAGACAGTGGCATTTTTGTCAGTGGGTGCCAAACAGACCAAACATTTGCGGATGCAACCCCTGCAGGCGGAGAGTTTTATGGTGCTTTAAGCAACGCAATTCAGGAAATCCTGGCTGAATCAGATGGTCCAGTCCCCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACCCAACGCCCAGGCCTTTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTTTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGATTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTGCTTTGGTGTTGCAGTAGAACTGTTTTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTCTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCCCAGTTTTCGGTACTGTTTTGGAAAGTTGAAAGTTAAATCTGGAGAACTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711778" ref_strand="+" ref_description="SGN-E711778 [FB02DH03]">
      <seq>cccgttaacttggctcaagagtttctgaaacagaaacttgatgccaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaatgagttatattttaatgcaactgaatgtatcatgtgccaacattnnanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15826" stop="17140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16123" g_stop="16838" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E711778" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16123" e_stop="16838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</genome_strand>
        <mrna_strand>CCCGTTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGCCAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236344" ref_strand="+" ref_description="SGN-E236344 [cLED-13-G13]">
      <seq>ctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15836" stop="16877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16136" g_stop="16577" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E236344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16136" e_stop="16577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACA</genome_strand>
        <mrna_strand>CTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371712" ref_strand="+" ref_description="SGN-E371712 [TUS-30-C1](-)">
      <seq>aacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacacaattcaggaaatcctggccgaatcagatggtccagtcaccatatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcaatgatcatcacgttaatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactatggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcaaagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaaattgtttgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15857" stop="17092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16157" g_stop="16801" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E371712" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16157" e_stop="16801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCA-ATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAG</genome_strand>
        <mrna_strand>AACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACACAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCATATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCAATGATCATCACGTTAATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTATGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAAAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAAATTGTTTGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288843" ref_strand="-" ref_description="SGN-E288843 [cLES-17-N15]">
      <seq>ggttttccaaacagtggcattttcgtcagtgggtgccaaacagaccaaacatttggggatgcaacccctgcaggcgaaaagtcttatggtgctttaagcaacgcaattcaggaaatcctggccgaatcaaatggtccagtcaccaataaggagcttgttagcaaggctaggaaaaaaatgcagaaacaaggtttcacacaacgcccaggcctttattggaatgatcatcacgttgaggccccttttgtttgttgattcaactgggcaaagccttctcgagaaactgttaaaaaacgcctgtgaagtcaacaaggtgttaaaaagccacacccttttgggaatttgggtgattgtttgtgcaaatgttggagaagctcttttactctggtgtttcagtaaaaccatgctccatcatgtgaatgtgtacaatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccccagttttcggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="15949" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16249" g_stop="16748" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16749" i_stop="17441" i_length="693">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.725" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17442" g_stop="17484" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="543" r_length="43" r_score="0.488"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E288843" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288843" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16249" e_stop="16748"/>
          <exon e_start="17442" e_stop="17484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAACATAAATATTGACCTTTGTCTGGCGAAACTAGGGAACAGAACGAAAGGAGGAGCTGAATTTCAAAATTTTGGTTTACATAAGAAAATATTCACTTAAATCGTGCACTTTCATACTATATAGTAATCAAGTACAACAAATCCTTGCACGCATAACACAATATCGCAATGCAAGTAAACAAGATTACTCGCGCTAGAACTAAGATGTGGTTATTTTAACTTCAATGAGATTTCACTCATTCGACAACAGTCGTTCTTCAAATTTTACTTGTACAAGTTTCAAAGATATATAGCAATAACTCCAGTTGTGTCCATGATTCCATTCCAAAGCTTTATCCATTGGAAAAAGTAGAAGTACCAAACTAAATCAACAAAACCGGTTAAGCCACGATCTACTTCTGTTCCTTCTTTGCTTCAATATCACTTGGATTTGGGACTGGTTGAATTCTTTGGTAAGGTTTCCTTGTCAACGTTTCGCCCTTTAGAGCTGCAACATATCTGTCATTTGTGTTCTCCTTTCTCTGCAGTTCGCCAAGGTACTCAGCCAACCTCTCTTTATTAACTTTACCCATCATCTGTTACAAAAATCAAAACAATATATGTTTAGGAATTCAACAATTGTAAGTCAAAGTACTAAGACAGAAGAAACC</genome_strand>
        <mrna_strand>GGTTTTCCAAACAGTGGCATTTTCGTCAGTGGGTGCCAAACAGACCAAACATTTGGGGATGCAACCCCTGCAGGCGAAAAGTCTTATGGTGCTTTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAAATGGTCCAGTCACCAATAAGGAGCTTGTTAGCAAGGCTAGGAAAAAAATGCAGAAACAAGGTTTCACACAACGCCCAGGCCTTTATTGGAATGATCATCACGTTGAGGCCCCTTTTGTTTGTTGATTCAACTGGGCAAAGCCTTCTCGAGAAACTGTTAAAAAACGCCTGTGAAGTCAACAAGGTGTTAAAAAGCCACACCCTTTTGGGAATTTGGGTGATTGTTTGTGCAAATGTTGGAGAAGCTCTTTTACTCTGGTGTTTCAGTAAAACCATGCTCCATCATGTGAATGTGTACAATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCCCAGTTTTCGGTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273465" ref_strand="+" ref_description="SGN-E273465 [cLEN-3-L23]">
      <seq>gagaactagtctcgagttttttttttttttttttgcattaaaatataactcattcagtatacaaacaagttctccagatttaactttcaaatatcctaaacaataccgaaaactgtggttctttaataccttattctctgaccaaatttaaaagaaaaaaaaaagagccaaatagtacacattcacatgatggagcatggttctactgaaacaccagagtaaaagagctactccaacattagcacaaacaatcacacaaatacacaaaaggatgtagctatataacacctcgttgacttcacagtcgtatttcaacagctactcgagaaggcatagcacagtagaatcaacaaacaaaaggagcatcaacgtgatgatcatcgcagtagaggcctgggcgttgtgtgaagccttgtttctgcatctttttcctagccttgctaacaagctcctcattggtgactggaccatctgattcggccaggatttcctgaattgcgttgcttagagcaccataagactctccgcctgcaggggttgcatccgcagatgtttggtctgtttggcacccactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="91809" stop="15974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17149" g_stop="17124" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17123" i_stop="16824" i_length="300">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16823" g_stop="16274" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="576" r_length="550" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E273465" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17149" e_stop="17124"/>
          <exon e_start="16823" e_stop="16274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAATCTCATTGAAGTTAAAATAACCACATCTTAGTTCTAGCGCGAGTAATCTTGTTTACTTGCATTGCGATATTGTGTTATGCGTGCAAGGATTTGTTGTACTTGATTACTATATAGTATGAAAGTGCACGATTTAAGTGAATATTTTCTTATGTAAACCAAAATTTTGAAATTCAGCTCCTCCTTTCGTTCTGTTCCCTAGTTTCGCCAGACAAAGGTCAATATTTATGTTGGCACATGATACATTCAGTTGCATTAAAATATAACTCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGAAAAAAAAAAGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGACTCTCCGCCTGCAGGGGTTGCATCCGCAGATGTTTGGTCTGTTTGGCACCCACTGA</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTTTTTT............................................................................................................................................................................................................................................................................................................TTTTTTTTGCATTAAAATATAACTCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGAAAAAAAAAAGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGACTCTCCGCCTGCAGGGGTTGCATCCGCAGATGTTTGGTCTGTTTGGCACCCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222019" ref_strand="+" ref_description="SGN-E222019 [cLEL-10-H6](-)">
      <seq>gtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaccccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="16029" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16329" g_stop="16736" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16737" i_stop="16869" i_length="133">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.584" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16870" g_stop="16889" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="427" r_length="20" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E222019" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16329" e_stop="16736"/>
          <exon e_start="16870" e_stop="16889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAACATAAATATTGACCTTTGTCTGGCGAAACTAGGGAACAGAACGAAAGGAGGA</genome_strand>
        <mrna_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAG-ACCCCA.....................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221447" ref_strand="+" ref_description="SGN-E221447 [cLEL-10-H6](-)">
      <seq>gtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="16029" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16329" g_stop="16736" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16737" i_stop="16869" i_length="133">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.584" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16870" g_stop="16888" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="428" r_length="19" r_score="0.474"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E221447" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16329" e_stop="16736"/>
          <exon e_start="16870" e_stop="16888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTC-ACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAACATAAATATTGACCTTTGTCTGGCGAAACTAGGGAACAGAACGAAAGGAGG</genome_strand>
        <mrna_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCAACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCAAA.....................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222748" ref_strand="+" ref_description="SGN-E222748 [cLEL-16-O13](-)">
      <seq>agtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaacctccatctggagaacttgtttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="16086" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16386" g_stop="16809" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E222748" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16386" e_stop="16809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTT</genome_strand>
        <mrna_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAACCTCCATCTGGAGAACTTGTTTGTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223125" ref_strand="+" ref_description="SGN-E223125 [cLEL-14-C12](-)">
      <seq>agtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttaatgcaccttttgtttgttgattcaactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttcaaagttaaatctggagancttgtttgtaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="16086" stop="17092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16386" g_stop="16789" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="423"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E223125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16386" e_stop="16789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGT</genome_strand>
        <mrna_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTAATGCACCTTTTGTTTGTTGATTCAACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTCAAAGTTAAATCTGGAGANCTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338618" ref_strand="+" ref_description="SGN-E338618 [cTOE-15-O22]">
      <seq>gttatgtcaggcaccaatactcgcagtgctgaacttgaagcccaactacggaagaacgctcgtccagaatacctaatgatgggtaaagataataaagagaggttggctgagtaccttggcgaactgcagagaaaggagaacacatgtgacagatatgttgcagctctgaagggcgaaacgttgacaaggaaaccttaccaaagaattgaaccagtcccaaatccaagtgatattgaagcaaagaaggaacagaagtagatcgtggcttaaccggatgcgtagatttagtttggtacttctactttttccaatggataaagctttggaatggaatcatggacacaactggagttattgctatatatctttgaaacttgtacaagtaaaatttgaagaacgactgttgtcgaatgagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="20379" stop="16765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20079" g_stop="20005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20004" i_stop="17410" i_length="2595">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17409" g_stop="17065" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="420" r_length="345" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E338618" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20079" e_stop="20005"/>
          <exon e_start="17409" e_stop="17065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGTCAGCCACCAATACTCGCAGTCCTGAACTTGAAGCCCAACTACGGAAGAACGCTCGTCCAGAATCCCTAGTATGTTCACTTCCCCTTCGAATACTCATATTGCTAAAACTAGATCAGTTTGTGATTTATGTATGTTGTATCTTCTGCTGTTTTAGCTGTACGGGGAATTGCTTAGGATTATCAATCGCCTAATAGTAATGTAAATTGCCAAATAAGTATTTGATTCGTATGTATTGTAGCTTCTGCAGCGTGAAATTGCTTTGATATTAACATAGAGCCCCTTCACCTAGTAGTATTTTTATTCTTAGATGATTATCTGATTCATTTGTCTTGTAGCTTCTGTAGTTATGGTTATACGCAATTTTACGTGGTGTTGTCGGTTCTTATTTTGTATTCTTTAAAAAAATTCTGATATGGAATCATAGTCTATATAATTACAATTATGAGTTAAGAGTATCCATTAAATGTAGTCTAAAAGATATAGACCATCAGTCAGTTGGTTCATTCTAATTCATTGAATTAATCCGTTATAAAAATATCAGAAAAAGAAGGGAACATTGTTTTTGGTTAACATGAATTGAATTTTTCTGTAAACAATTTTTCATAAAAATTGTGTCTTTATCCCGGAGTCTTGAAGAAAATAAAAATCTTTCTTTTCTTGACTCCCCTTGGCCGCTGCTTAGCTAAGCGTTATTACAGGAACATCTTCAATCTGGTAGGATGAGTGATCTGTTTCACATGTCTTGTACATCCTGATCTAATGGTTATACCAAGAACCGCCTTGTCATTATTATTTCCTAATGTGCTTTAGAGTCCCCTCACCTAGGAGTATTGTTTTTACCAGATGAGTATTGATTCATGTGTTGTAGTTTCTGCCGTTATGATTGTATGCAAATTGATTCTTTTTGTTTATTGTACTCCCTTTGGCCTTTGCCTACTTAACTGTTACTACCAGAGGATCTTTCATAACAATTAGCAAGGCAAAGGCCTTTGAAAGATGCTCTGTTACTAGTAATGGTATATGAGGAGCAAACTTTCATCTGGCGAGGTCAGTATGCGCCTCATGTCTATTGTGTATTCTGCTGTGACGATTGAGCTTTTTGATCTGTCAAAATGAAAAGTAAACTAGCAGTATCATTTGATAATGTTTCTTGTTGTTTGATGTACTGGTTACCTTTGAAAATAAAATGATGTTTGGAGCTTTATTTTTTAGTGTAGATAAAGTGATTGATAGTTAACTTATAGAAAATAGCAATCGATAACCAATCTTGGTAGATACAAAACAAGAGTGTAAAGTAATTGAATTACTTCTAAGCATTTGGTTGGACACCTCCTCTATATTTATTGATGGGTTCCTATGTATGTTTTATGAGACATCATATGACAGATCCGGGAGTTTAAGAAATTAGATTAACAGTGGTATTTTTTAAGTATTAGTCAAAAAAATTATTTAAATGTAGAAATCCTGGGATTCTACAATAATTTGTTCAGAGAGACAAAGAAGTGAAAGCCTAGATGGTATGTTGAGGAACTGGGGAATACATTATAAGTGGAGCGGAAGTGGACCGAGTTGAAAAAACTTTCATTGAGAAAACGTATGGCTTGCTATCTAAGCAGTGTAGGAAACGAAGTCTCTGGAATTTGATAGATTCACCAAGGGCTTTTTGTTGATAATGTTGACCTATTATTTATTTTTAACGAAGTAATATCATTAACAGGCATCACGAAGATGCAAATAGAACATAGTAGTAAAGAGGGTGATATGCTAGCTCCATTAAAGGCATCAAGAAGATGTTGACCAATCATTAAGGAAGAATCAAAGACCAGCTTCAAGTATTTCCTTTAGGGGGAGAAACTAGATAGAAGCCTAAATGTGATTTTTATTGCTATAATCCTGATTCCTGAAGAGGTAAGATGTTGGTTAGACTCTTTTGACCTCTATTCTATTTGGCAATAGTTACAAGATTATTGCCAAAATCCTCAATGGAAGGTTGAGGAAAATAATAGACAAATTGGTATCTAAATCACATAATCTTTTTCTTTGTGAGAGTGCTAGTAGCTAATATGAGCTTGGAGTCCAAGATGAAGTATATTGATGTTAGGGCAATGTGCAAATTAGACTTCAAGGAATATGACCGTGTTAGCTGGCCTTTCTTACTAAAGCTACTTGAGAGCAGGGGTTAAATAGATTGACTTGTGCATATTAAGCTGTAAACGACCAGAATGTTAGTATCTTTTAACGTACAGATTCTACCAGCAATTCGGGCTTTAAGGTGGAAAAATCTCTCACCGTTTACCCTGGTTTGCCTTTGGGTGCCTTGGACCAGCTTGTATTTTTGGAACTTGTAAATTGGAAAGGAAGGACAACTAAGTTCTTTAAGTCCCCAAAGAACCTCCATTGAGTGACGTAAAGTGTTATTGTAATAAAGATTAATTTTAAACCCTTTTCTACAAATAGCTATAATGTTCACTTCTCTATATTGTTCAGTCTTTTGCTGTTAGAAAGAACATCGACTTTGCCTTTTTTATGAAGAGCAAAGTAGGTAAAGCTTTGCAGTAGATAAAAAAAAATGGACTCACAGACACAGTGGTTTCTTCTGTCTTAGTACTTTGACTTACAATTGTTGAATTCCTAAACATATATTGTTTTGATTTTTGTAACAGATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAA</genome_strand>
        <mrna_strand>GTTATGTCAGGCACCAATACTCGCAGTGCTGAACTTGAAGCCCAACTACGGAAGAACGCTCGTCCAGAATACCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGGTAAAGATAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACATGTGACAGATATGTTGCAGCTCTGAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTGAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGATGCGTAGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337588" ref_strand="+" ref_description="SGN-E337588 [cTOE-11-F3]">
      <seq>aactaaggaatcgaagccgttcttcatcggattcgccaccgtttgcggcgtcattccggggattattggtttctgcgttatgtcagccaccaatactcgcagtcctgaacttgaagcccaactacggaagaacgctcgtccagaatccctaatgatgggtaaagttaataaagagaggttggctgagtaccttggcgaactgcagagaaaggagaacacaaatgacagatatgttgcagctctaaagggcgaaacgttgacaaggaaaccttaccaaagaattcaaccagtcccaaatccaagtgatattgaagcaaagaaggaacagaagtagatcgtggcttaaccggttttgttgatttagtttggtacttctactttttccaatggataaagctttggaatggaatcatggacacaactggagttattgctatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="20455" stop="16821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20155" g_stop="20005" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20004" i_stop="17410" i_length="2595">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17409" g_stop="17121" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="440" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E337588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20155" e_stop="20005"/>
          <exon e_start="17409" e_stop="17121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAAGGAATCGAAGCCGTTCTTCATCGGATTCGCCACCGTTTGCGGCGTCATTCCGGGGATTATTGGTTTCTGCGTTATGTCAGCCACCAATACTCGCAGTCCTGAACTTGAAGCCCAACTACGGAAGAACGCTCGTCCAGAATCCCTAGTATGTTCACTTCCCCTTCGAATACTCATATTGCTAAAACTAGATCAGTTTGTGATTTATGTATGTTGTATCTTCTGCTGTTTTAGCTGTACGGGGAATTGCTTAGGATTATCAATCGCCTAATAGTAATGTAAATTGCCAAATAAGTATTTGATTCGTATGTATTGTAGCTTCTGCAGCGTGAAATTGCTTTGATATTAACATAGAGCCCCTTCACCTAGTAGTATTTTTATTCTTAGATGATTATCTGATTCATTTGTCTTGTAGCTTCTGTAGTTATGGTTATACGCAATTTTACGTGGTGTTGTCGGTTCTTATTTTGTATTCTTTAAAAAAATTCTGATATGGAATCATAGTCTATATAATTACAATTATGAGTTAAGAGTATCCATTAAATGTAGTCTAAAAGATATAGACCATCAGTCAGTTGGTTCATTCTAATTCATTGAATTAATCCGTTATAAAAATATCAGAAAAAGAAGGGAACATTGTTTTTGGTTAACATGAATTGAATTTTTCTGTAAACAATTTTTCATAAAAATTGTGTCTTTATCCCGGAGTCTTGAAGAAAATAAAAATCTTTCTTTTCTTGACTCCCCTTGGCCGCTGCTTAGCTAAGCGTTATTACAGGAACATCTTCAATCTGGTAGGATGAGTGATCTGTTTCACATGTCTTGTACATCCTGATCTAATGGTTATACCAAGAACCGCCTTGTCATTATTATTTCCTAATGTGCTTTAGAGTCCCCTCACCTAGGAGTATTGTTTTTACCAGATGAGTATTGATTCATGTGTTGTAGTTTCTGCCGTTATGATTGTATGCAAATTGATTCTTTTTGTTTATTGTACTCCCTTTGGCCTTTGCCTACTTAACTGTTACTACCAGAGGATCTTTCATAACAATTAGCAAGGCAAAGGCCTTTGAAAGATGCTCTGTTACTAGTAATGGTATATGAGGAGCAAACTTTCATCTGGCGAGGTCAGTATGCGCCTCATGTCTATTGTGTATTCTGCTGTGACGATTGAGCTTTTTGATCTGTCAAAATGAAAAGTAAACTAGCAGTATCATTTGATAATGTTTCTTGTTGTTTGATGTACTGGTTACCTTTGAAAATAAAATGATGTTTGGAGCTTTATTTTTTAGTGTAGATAAAGTGATTGATAGTTAACTTATAGAAAATAGCAATCGATAACCAATCTTGGTAGATACAAAACAAGAGTGTAAAGTAATTGAATTACTTCTAAGCATTTGGTTGGACACCTCCTCTATATTTATTGATGGGTTCCTATGTATGTTTTATGAGACATCATATGACAGATCCGGGAGTTTAAGAAATTAGATTAACAGTGGTATTTTTTAAGTATTAGTCAAAAAAATTATTTAAATGTAGAAATCCTGGGATTCTACAATAATTTGTTCAGAGAGACAAAGAAGTGAAAGCCTAGATGGTATGTTGAGGAACTGGGGAATACATTATAAGTGGAGCGGAAGTGGACCGAGTTGAAAAAACTTTCATTGAGAAAACGTATGGCTTGCTATCTAAGCAGTGTAGGAAACGAAGTCTCTGGAATTTGATAGATTCACCAAGGGCTTTTTGTTGATAATGTTGACCTATTATTTATTTTTAACGAAGTAATATCATTAACAGGCATCACGAAGATGCAAATAGAACATAGTAGTAAAGAGGGTGATATGCTAGCTCCATTAAAGGCATCAAGAAGATGTTGACCAATCATTAAGGAAGAATCAAAGACCAGCTTCAAGTATTTCCTTTAGGGGGAGAAACTAGATAGAAGCCTAAATGTGATTTTTATTGCTATAATCCTGATTCCTGAAGAGGTAAGATGTTGGTTAGACTCTTTTGACCTCTATTCTATTTGGCAATAGTTACAAGATTATTGCCAAAATCCTCAATGGAAGGTTGAGGAAAATAATAGACAAATTGGTATCTAAATCACATAATCTTTTTCTTTGTGAGAGTGCTAGTAGCTAATATGAGCTTGGAGTCCAAGATGAAGTATATTGATGTTAGGGCAATGTGCAAATTAGACTTCAAGGAATATGACCGTGTTAGCTGGCCTTTCTTACTAAAGCTACTTGAGAGCAGGGGTTAAATAGATTGACTTGTGCATATTAAGCTGTAAACGACCAGAATGTTAGTATCTTTTAACGTACAGATTCTACCAGCAATTCGGGCTTTAAGGTGGAAAAATCTCTCACCGTTTACCCTGGTTTGCCTTTGGGTGCCTTGGACCAGCTTGTATTTTTGGAACTTGTAAATTGGAAAGGAAGGACAACTAAGTTCTTTAAGTCCCCAAAGAACCTCCATTGAGTGACGTAAAGTGTTATTGTAATAAAGATTAATTTTAAACCCTTTTCTACAAATAGCTATAATGTTCACTTCTCTATATTGTTCAGTCTTTTGCTGTTAGAAAGAACATCGACTTTGCCTTTTTTATGAAGAGCAAAGTAGGTAAAGCTTTGCAGTAGATAAAAAAAAATGGACTCACAGACACAGTGGTTTCTTCTGTCTTAGTACTTTGACTTACAATTGTTGAATTCCTAAACATATATTGTTTTGATTTTTGTAACAGATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATA</genome_strand>
        <mrna_strand>AACTAAGGAATCGAAGCCGTTCTTCATCGGATTCGCCACCGTTTGCGGCGTCATTCCGGGGATTATTGGTTTCTGCGTTATGTCAGCCACCAATACTCGCAGTCCTGAACTTGAAGCCCAACTACGGAAGAACGCTCGTCCAGAATCCCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395395" ref_strand="+" ref_description="SGN-E395395 [TUS-16-E16](-)">
      <seq>ccagcttcaacaacttcaactttcctttgtgcgtccccgcactctatccgggttacagttgccttcaaatttaaataagttggtacttgaaggaattcatatagaaagtgttattcccttcattgcgggactaccaagcctggaatatctccgattacaggatgtgtgttttcctcaatcagaagagtggtgccttggagatatgacgttccataaacttaagttgttgaaactggtgaagttaaatatatcaaggtgggatgtctcagaggaatcatttccgttgcttgaaacactcgttataaagaagtgcggtgacctagaggagatcccagttagctttgctgatattcccacattggaacagattaaattgattgggtcctggaaagtatctttggaggattcagctgtgagaatgaaggaagaaatcatacagattgaaggatgtgatcgtttacacctcgtcaaacaacactcagattgatgatagctaattgttgcagccactcaagtcttgctagcccatttttcttttgttgtaacacaaatactatttggtacgtttgttttcattgatacactctttttatgtatcatatgattggagataaatataaatcagttgctcattcactgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="21772" stop="20533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21472" g_stop="20834" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E395395" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21472" e_stop="20834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTTCAACAACTTCAACTTTCCTTTGTGCGTCCCCGCACTCTATCCGGGTTACAGTTGCCTTCAAATTTAAATAAGTTGGTACTTGAAGGAATTCATATAGAAAGTGTTATTCCCTTCATTGCGGGACTACCAAGCCTGGAATATCTCCGATTACAGGATGTGTGTTTTCCTCAATCAGAAGAGTGGTGCCTTGGAGATATGACGTTCCATAAACTTAAGTTGTTGAAACTGGTGAAGTTAAATATATCAAGGTGGGATGTCTCAGAGGAATCATTTCCGTTGCTTGAAACACTCGTTATAAAGAAGTGCGGTGACCTAGAGGAGATCCCAGTTAGCTTTGCTGATATTCCCACATTGGAACAGATTAAATTGATTGGGTCCTGGAAAGTATCTCTGGAGGATTCAGCTGTGAGAATGAAGGAAGAAATCATACAGATTGAAGGATGTGATCGTTTACACCTCGTCAAACAACACTCAGATTGATGATAGCTAATTGTTGCAGCCACTCAAGTCTTGCTAGCCCATTTCTCTTTTGTTGTAACACAACTACTATTTGCTACGTTTGTTTTCATTGATACACTCTTTTTATGTATCATATGATTGGAGATAAATATAAATCAGTTGCTCATTCACTG</genome_strand>
        <mrna_strand>CCAGCTTCAACAACTTCAACTTTCCTTTGTGCGTCCCCGCACTCTATCCGGGTTACAGTTGCCTTCAAATTTAAATAAGTTGGTACTTGAAGGAATTCATATAGAAAGTGTTATTCCCTTCATTGCGGGACTACCAAGCCTGGAATATCTCCGATTACAGGATGTGTGTTTTCCTCAATCAGAAGAGTGGTGCCTTGGAGATATGACGTTCCATAAACTTAAGTTGTTGAAACTGGTGAAGTTAAATATATCAAGGTGGGATGTCTCAGAGGAATCATTTCCGTTGCTTGAAACACTCGTTATAAAGAAGTGCGGTGACCTAGAGGAGATCCCAGTTAGCTTTGCTGATATTCCCACATTGGAACAGATTAAATTGATTGGGTCCTGGAAAGTATCTTTGGAGGATTCAGCTGTGAGAATGAAGGAAGAAATCATACAGATTGAAGGATGTGATCGTTTACACCTCGTCAAACAACACTCAGATTGATGATAGCTAATTGTTGCAGCCACTCAAGTCTTGCTAGCCCATTTTTCTTTTGTTGTAACACAAATACTATTTGGTACGTTTGTTTTCATTGATACACTCTTTTTATGTATCATATGATTGGAGATAAATATAAATCAGTTGCTCATTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398442" ref_strand="+" ref_description="SGN-E398442 [TUS-16-E16]">
      <seq>tgagttcgaagaatatagtctggcaactatgcagttgagttttgataacttaccccactgtttaaagccttgtcttctttatatgggaatgttttcggaggacgcaagaattccagcatctacattgataagtttatggattgctgaaggattcgtggagaacactgaatctggtacattaatggaagaggaagctgaaggttacttgatggatctcattagcagtaacatggtaatgctttcaaagagaagttataagggtaaagtcaaatactgtcaggttcatgatgttgtgcatcacttttgcttggaaaagagtagagaagcaaagtttatgcttgcagtgaagggtcaatatatccagtttcaacctttggattggaagggaactcgagtgagcttcagttttagtgaagagctttccaagtttgcatctctggtctccaaaacacagaagcctttccatcaacacttgaggtcattgataacgaccaatcgagcagaatctattgatgtgattctcttctgtcagattagtgaattgcgacttcttaaagtcttggatttgagttcttatactgtggaatttttgtcgttagctacattcaaaccactaaatcagctgaagtacctcgcagttcaggctgataaattctattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="22741" stop="21478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22441" g_stop="21778" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E398442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22441" e_stop="21778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTCAACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAGCAGAATCTATTGATGTGATTCTCTTCTGTCAGATTAGTGAATTGCGACTTCTTAAAGTCTTGGATTTGAGTTCTTATACTGTGGAATTTTTGTCGTTAGCTACATTCAAACCACTAAATCAGCTGAAGTACCTCGCAGTTCAGGCTGATAAATTCTATTTTGAT</genome_strand>
        <mrna_strand>TGAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTCAACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAGCAGAATCTATTGATGTGATTCTCTTCTGTCAGATTAGTGAATTGCGACTTCTTAAAGTCTTGGATTTGAGTTCTTATACTGTGGAATTTTTGTCGTTAGCTACATTCAAACCACTAAATCAGCTGAAGTACCTCGCAGTTCAGGCTGATAAATTCTATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204998" ref_strand="+" ref_description="SGN-E204998 [cLEC-16-O24]">
      <seq>gagttcgaagaatatagtctggcaactatgcagttgagttttgataacttaccccactgtttaaagccttgtcttctttatatgggaatgttttcggaggacgcaagaattccagcatctacattgataagtttatggattgctgaaggattcgtggagaacactgaatctggtacattaatggaagaggaagctgaaggttacttgatggatctcattagcagtaacatggtaatgctttcaaagagaagttataagggtaaagtcaaatactgtcaggttcatgatgttgtgcatcacttttgcttggaaaagagtagagaagcaaagtttatgcttgcagtgaagggtcaatatatccagtttcaacctttggattggaagggaactcgagtgagcttcagttttagtgaagagctttccaagtttgcatctctggtctccaaaacacagaagcctttccatcaacacttgaggtcattgataacgaccaatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="22740" stop="21642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22440" g_stop="21942" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E204998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22440" e_stop="21942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTCAACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAG</genome_strand>
        <mrna_strand>GAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTCAACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370462" ref_strand="+" ref_description="SGN-E370462 [TUS-29-M19]">
      <seq>aaaagaagagagttgtgaattgttgcagaaaaaagtgtttcaaaaggaagatttcccgcctgaactacaagatgtgagtcgagcagttgcagaaaaatgcaaaggactgcccctagtggttgtcttggtagctggaataatcaaaaaaaggaaaatggaagaatcttggtggaatgaggtgaaagattctttatttgaccaccttaatcgtgagtcggaagaatatagtcttttaactatgcagttgagttactataacttaaccgactgtttaaagccttgtcttctttatatggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="22951" stop="22051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22651" g_stop="22351" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E370462" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22651" e_stop="22351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAGAGAGTTGCCAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTGCCCGCCTGAACTACAAGATGTGAGTCAAGCAGTAGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATGCTTTATTTGACTATCTTGACAGTGAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATG</genome_strand>
        <mrna_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTTAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713530" ref_strand="+" ref_description="SGN-E713530 [FB08DE11]">
      <seq>cgcttgacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaattttacttttgtgacaggacttgtatatgtatatgtttcgagtgttggtgaatgaataattcccctcttctatgtttatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="28869" stop="27529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28570" g_stop="28331" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28138" g_stop="27826" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="553" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E713530" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28570" e_stop="28331"/>
          <exon e_start="28138" e_stop="27826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATGTAATCAAATACTG</genome_strand>
        <mrna_strand>CGCTTGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699586" ref_strand="+" ref_description="SGN-E699586 [FA10CD09]">
      <seq>gatcaacacaacaaaattctgattttttctttgaaattttagagaaaaaaaaagatggaaggcataaatatatcgactcatccagatgttccaggtgaacctacgcagacaggaacatcaattcttgagactgcaacagctactattcaaggatttggtcctatcaacaaaattcatcaacatctttgcgcgttccatttctacggacacgacatgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaagagttcaggcagtgtctcatttacgacaggcctgatgccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaanagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaagttcatttcgttttgcgtttaatttgttcaaaataaaattttacttttgtgacaggacttgaatatgtatatgtttcgagggttggggaaatgaataatccccctcctctatgtttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29634" stop="27529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29334" g_stop="29144" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28734" g_stop="28331" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="595" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28138" g_stop="27828" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="907" r_length="312" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E699586" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29334" e_stop="29144"/>
          <exon e_start="28734" e_stop="28331"/>
          <exon e_start="28138" e_stop="27828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGCGTTAAGTTTCTATTATTCTATCCTTCGTTTTTTTATTATAACTAAATTTATAGCACTGATAACGCTAGTGGCGAATTTAAAATTTTTAATATATTAGGGTTATAGGTGGATATATTTATTTTGAGACGAGAGTAGATTGATATGTGTTATAAGTTACTCGTGAACAAAGCTGGACAATAGGAGTTTGGGGTAAAAAATAAGAACATTTAACTTCTGCACCATCAGAAGAAAAGTGAGAATTATATAAGGATTTTTTTAGAAATTAGTATGAAAATTTGCGTGAAAATAAATTTTGTAAGAATTTTCATACTATTTTTAGGAAAATCTTCATGTTATTTACAGTTTTCTAAGTTGGATAGCTGGCTCAAATCCACGACTCTAGCGTGAAACTATGCACTTTCGATTTCAGGTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTG-AATGAATAATTCCCCTCTTCTATGTTTATGTAATCAAATAC</genome_strand>
        <mrna_strand>GATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAANAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAAGTTCATTTCGTTTTGCGTTTAATTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGAATATGTATATGTTTCGAGGGTTGGGGAAATGAATAATCCCCCTCCTCTATGTTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719906" ref_strand="+" ref_description="SGN-E719906 [FC09AH04]">
      <seq>aaataagtaaacagatcaacacaacaaaattctgattttttctttgaaattttagagaaaaaaaaagatggaaggcataaatatatcgactcatccagatgttccaggtgaacctacgcagacaggaacatcaattcttgagactgcaacagctactattcaaggatttggtcctatcaacaaaattcatcaacatctttgcgcgttccatttctacggacacgacatgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaaaagttcaggcagtgtctcatttacgacaggcctgatgccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaattttacttttgtgacaggacttgtatatgtatatgtttcgagtgttggtgaatgaatattcccctcttctatgtttatgtaatccnnaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29647" stop="27534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29347" g_stop="29144" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28734" g_stop="28331" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="608" r_length="404" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28138" g_stop="27832" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="914" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="916" polyA_stop="928"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E719906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29347" e_stop="29144"/>
          <exon e_start="28734" e_stop="28331"/>
          <exon e_start="28138" e_stop="27832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGTAAACAGATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGCGTTAAGTTTCTATTATTCTATCCTTCGTTTTTTTATTATAACTAAATTTATAGCACTGATAACGCTAGTGGCGAATTTAAAATTTTTAATATATTAGGGTTATAGGTGGATATATTTATTTTGAGACGAGAGTAGATTGATATGTGTTATAAGTTACTCGTGAACAAAGCTGGACAATAGGAGTTTGGGGTAAAAAATAAGAACATTTAACTTCTGCACCATCAGAAGAAAAGTGAGAATTATATAAGGATTTTTTTAGAAATTAGTATGAAAATTTGCGTGAAAATAAATTTTGTAAGAATTTTCATACTATTTTTAGGAAAATCTTCATGTTATTTACAGTTTTCTAAGTTGGATAGCTGGCTCAAATCCACGACTCTAGCGTGAAACTATGCACTTTCGATTTCAGGTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATGTAATCAA</genome_strand>
        <mrna_strand>AAATAAGTAAACAGATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAAAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAAT-ATTCCCCTCTTCTATGTTTATGTAATCCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715269" ref_strand="+" ref_description="SGN-E715269 [FB13DC03]">
      <seq>atgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaagagttcaggcagtgtctcatttacgacaggcctgatgccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaattttacttttgtgacaggacttgtatatgtatatgtttcgagtgttggtgaatgaataattcccctcttctatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29012" stop="27539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28712" g_stop="28331" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28138" g_stop="27839" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="682" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E715269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28712" e_stop="28331"/>
          <exon e_start="28138" e_stop="27839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATG</genome_strand>
        <mrna_strand>ATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712739" ref_strand="+" ref_description="SGN-E712739 [FB05CG07]">
      <seq>aaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaattttacttttgtgacaggacttgtatatgtatatgtttcgagtgttggtgaatgaataattcccctcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="28823" stop="27547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28523" g_stop="28331" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28138" g_stop="27848" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="484" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E712739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28523" e_stop="28331"/>
          <exon e_start="28138" e_stop="27848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCT</genome_strand>
        <mrna_strand>AAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702103" ref_strand="+" ref_description="SGN-E702103 [FA17DC06]">
      <seq>gatcaacacaacaaaattctgattttttctttgaaattttagagaaaaaaaaaagatggaaggcataaatatatcgactcatccagatgttccaggtgaacctacgcagacaggaacatcaattcttgagactgcaacagctactattcaaggatttggtcctatcaacaaaattcatcaacatctttgcgcgttccatttctacggacacgacatgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaagagttcaggcagtgtctcatttacgacaggcctgatgccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaattttacttttgtgacaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29634" stop="27599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29334" g_stop="29144" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28734" g_stop="28331" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="596" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28138" g_stop="27899" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="836" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E702103" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29334" e_stop="29144"/>
          <exon e_start="28734" e_stop="28331"/>
          <exon e_start="28138" e_stop="27899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAG-AAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGCGTTAAGTTTCTATTATTCTATCCTTCGTTTTTTTATTATAACTAAATTTATAGCACTGATAACGCTAGTGGCGAATTTAAAATTTTTAATATATTAGGGTTATAGGTGGATATATTTATTTTGAGACGAGAGTAGATTGATATGTGTTATAAGTTACTCGTGAACAAAGCTGGACAATAGGAGTTTGGGGTAAAAAATAAGAACATTTAACTTCTGCACCATCAGAAGAAAAGTGAGAATTATATAAGGATTTTTTTAGAAATTAGTATGAAAATTTGCGTGAAAATAAATTTTGTAAGAATTTTCATACTATTTTTAGGAAAATCTTCATGTTATTTACAGTTTTCTAAGTTGGATAGCTGGCTCAAATCCACGACTCTAGCGTGAAACTATGCACTTTCGATTTCAGGTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGAC</genome_strand>
        <mrna_strand>GATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718586" ref_strand="+" ref_description="SGN-E718586 [FC05AD08]">
      <seq>gggcgattggcggccaatcggccgaattaaaataagtaaacagaccaacacaacaaaattctgattttttctttgaaattttagagaaaaaaaaagatggaaggcataaatatatcgactcatccagatgttccaggtgaacctacgcaaacaggaacatcaattcttgagactgcaacagctactattcaaggatttggtcctatcaacaaaattcatcaacatctttgcgcgttccatttctacggacacgacatgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaaaagttcaggcagtgtctcatttacaacaggcctgatgccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacaagaagaaattctggcattcccacttgtacaaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtcctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcacccacttgctaatgctggaggcaaaggcattcgcactgtccttagagaagttgattgtaaacctatcgaatctgtccctagagtttttgtttaagcttaggttcatttcgttttgcgtttattttgttcaaaataaaaattttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29648" stop="27610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29348" g_stop="29144" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="233" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28734" g_stop="28331" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="637" r_length="404" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28138" g_stop="27910" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="867" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E718586" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29348" e_stop="29144"/>
          <exon e_start="28734" e_stop="28331"/>
          <exon e_start="28138" e_stop="27910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAGTAAACAGATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGCGTTAAGTTTCTATTATTCTATCCTTCGTTTTTTTATTATAACTAAATTTATAGCACTGATAACGCTAGTGGCGAATTTAAAATTTTTAATATATTAGGGTTATAGGTGGATATATTTATTTTGAGACGAGAGTAGATTGATATGTGTTATAAGTTACTCGTGAACAAAGCTGGACAATAGGAGTTTGGGGTAAAAAATAAGAACATTTAACTTCTGCACCATCAGAAGAAAAGTGAGAATTATATAAGGATTTTTTTAGAAATTAGTATGAAAATTTGCGTGAAAATAAATTTTGTAAGAATTTTCATACTATTTTTAGGAAAATCTTCATGTTATTTACAGTTTTCTAAGTTGGATAGCTGGCTCAAATCCACGACTCTAGCGTGAAACTATGCACTTTCGATTTCAGGTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAAT-AAAATTTTACTTT</genome_strand>
        <mrna_strand>AAAATAAGTAAACAGACCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAAACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAAAGTTCAGGCAGTGTCTCATTTACAACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACAAGAAGAAATTCTGGCATTCCCACTTGTACAAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAAATTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698680" ref_strand="+" ref_description="SGN-E698680 [FA07BA04]">
      <seq>ccctacacaacaaaattctgattttttctttgaaattttagagaaaaaaaaagatggaaggcataaatatatcgactcatccagatgttccaggtgaacctacgcagacaggaacatcaattcttgagactgcaacagctactattcaaggatttggtcctatcaacaaaattcatcaacatctttgcgcgttccatttctacggacacgacatgacacggcaagtggaggcgcaccacttctgtggacaccaaaatgaagagttcaggcagtgtctcatttacgacaggcctgatgcccgatgctcgtctaatcgggctcgagtacatcgtatcggaggagctgttcttgacattgccagacgacgagaagaaattctggcattcccacttgtacgaggtgaaaagtggtgtcttgttcatgcccggtgttccaggcccgattcaacgacaagatcatgaaaaaacggtgaaaacttatggcaaagtgatacatttctggcaggttgatagaggtgatacacttcctttgggaattcctcaagttatgatggcgcttactagagatggtcaactcgatcagaaccttgttcaagatgtggagaagcgttttggtgtgtccctttgatgaagaaagggagaaaagggcatatatggaaggtccgtcccatggggttcccccacttgctaatgctggaggcaaaggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="29631" stop="27726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29333" g_stop="29144" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28734" g_stop="28331" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="595" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28138" g_stop="28026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="709" r_length="114" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E698680" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29333" e_stop="29144"/>
          <exon e_start="28734" e_stop="28331"/>
          <exon e_start="28138" e_stop="28026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGCGTTAAGTTTCTATTATTCTATCCTTCGTTTTTTTATTATAACTAAATTTATAGCACTGATAACGCTAGTGGCGAATTTAAAATTTTTAATATATTAGGGTTATAGGTGGATATATTTATTTTGAGACGAGAGTAGATTGATATGTGTTATAAGTTACTCGTGAACAAAGCTGGACAATAGGAGTTTGGGGTAAAAAATAAGAACATTTAACTTCTGCACCATCAGAAGAAAAGTGAGAATTATATAAGGATTTTTTTAGAAATTAGTATGAAAATTTGCGTGAAAATAAATTTTGTAAGAATTTTCATACTATTTTTAGGAAAATCTTCATGTTATTTACAGTTTTCTAAGTTGGATAGCTGGCTCAAATCCACGACTCTAGCGTGAAACTATGCACTTTCGATTTCAGGTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATG-CCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAGGTACACAAATCATTAATAAAAAAACCCTTTAACTTGATGTGACTTGGCTTTAGATGTGTACAAGTATATATTGAACAAAACAAATTGTCCTACATGCCTACATAAAAATTGTGTGTGTTATGTAGCGACATCCACATGTTCAATTTTATTTGTTATATTTTTACGTCTTTTAAAAAATAAAATTGGATGTAGATGTGGAGAAGCGTTTTGGTGTGT-CCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATT</genome_strand>
        <mrna_strand>CCCTACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG................................................................................................................................................................................................ATGTGGAGAAGCGTTTTGGTGTGTCCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCCCCCACTTGCTAATGCTGGAGGCAAAGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312877" ref_strand="+" ref_description="SGN-E312877 [cTOA-8-F21]">
      <seq>cctcaccccacccacccacctctctctctattaacttctcaacctccaaatcttaacaatccaattcgaacaaattatcaaatgtatccatcatcaacatcttcttcatcacaaggttcaatgagccacaccagcaccaccgctggcggcgccggcggtggtctcactcgctacggttcagctccgggatcatttttaactacagcagttgaagccgtcgttaacggtaatcacgagttcgcttctcacggatctcatcactcacaccttggtccttcacggttttttcagtccaatctagcatctacttcgttaaattccgaatctacaagtaaagcgaaggaacaatcgaatttacagaggtcaattggtttcaatgacttaacaatcggcggcggaagcggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="41397" stop="42404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41697" g_stop="42104" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E312877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41697" e_stop="42104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCACCCCACCCACCCACCTCTCTCTCTATTAACTTCTCAACCTCCAAATCTTAACAATCCAATTCGAACAAATTATCAAATGTATCCATCATCAACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCT</genome_strand>
        <mrna_strand>CCTCACCCCACCCACCCACCTCTCTCTCTATTAACTTCTCAACCTCCAAATCTTAACAATCCAATTCGAACAAATTATCAAATGTATCCATCATCAACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302506" ref_strand="+" ref_description="SGN-E302506 [cLEX-1-A23]">
      <seq>aacatcttcttcatcacaaggttcaatgagccacaccagcaccaccgctggcggcgccggcggtggtctcactcgctacggttcagctccgggatcatttttaactacagcagttgaagccgtcgttaacggtaatcacgagttcgcttctcacggatctcatcactcacaccttggtccttcacggttttttcagtccaatctagcatctacttcgttaaattccgaatctacaagtaaagcgaaggaacaatcgaatttacagaggtcaattggtttcaatgacttaacaatcggcggcggaagcggcgctggaggaggagttttgccgacgacttcaacgacgccgttggttcgacatagtagctcaccggcgaggttccttaatcaacttgctactgctgcaggtgatactgtttcaatggggagaggaagctataacccaaaaggcggtggagatagtggccggggaataacaaggctgaactctcagctcagcttcacaacgcaagaagctctttctcaaatagcagaggaaaatgaggatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="41492" stop="47611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41792" g_stop="42207" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42208" i_stop="47175" i_length="4968">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47176" g_stop="47311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="552" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E302506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41792" e_stop="42207"/>
          <exon e_start="47176" e_stop="47311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCTGGAGGAGGAGTTTTGCCGACGACTTCAACGACGCCGTTGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTGGTAAGTTTTCAACTTCCCTTTTTTTCCTAATTGATATGTCAAATGACGAATTTAACCTTCCTGTATATGATTCCTTTCTGTTTGCTTTTTTTTTTTTCCTGCTAAAGTCATCAGCATTTGGTAACTTTTTTAACCAATCAGAGTAGACTTTGCTAATTGACTAATCACAACTAACTTTGCATAAATTAACAAACTTTGAAATGCATTTTACATTTTAAAGTATTCCCTGGTTACATTTTGTCCACATGACAAAGTTAATTTCGACACAAAATTTAAGAAAGAAATAATATTTTTATAGTTAAACATGTTAGAATAATTTTATAGCTATTTAAATCGTAAAAATAATTTCTTACAAAAATGTTAAATTGAATTACGAACAATAAGCTCTTGTGATCTGTTTTTTTTCCAAACCCCAGACACAGCAGAAGCTTAATTAATGCGTTGAGTTACCTTTTAAAGAAAGTGTAATTAGCTACCGATGAAATGAGAAAGTAGGTTTCTTGCAGATAGAACCAATTAATGGAGGATTAACTTATATTAATCATCTCATTGGACTTCATTAACTTCTAAATGAATTGTCATGAGATTACAGTACAAAAGTAAGATTTACTTATGTCACAATTAGACGTTATAAACTGACTAGTTGAGCACTTAAACATAAATAATTACTCAAAAAAGGACACATATAGAGTAAGTGGGGAAATATGCTAAGAGTAATTGAGTTTGTCTTATCTAATTACATATAACAAGTTGCTAAAAAAAATTTACCAAAAGATTAAAAGAGTTATGTACATGTTTAAGGATATACTTAGTACTCGAAGAATCTTTAATACCTCCTTACAACTTGCAAACTCATTTTTTCTTTCCCTCCATATGATTAGTACTTTTAACTTCTAATCTTAAAAAAGAAGTACTACTTCATTTGTCCCACTTCATGCAGTTACTAAAATGGTGAGCTAAAAGGAATTCTATAAAAATTTTGAACTATGAATTATTAAATTTATATTACATTTTAAGCAATTTTAAATATGTAATTTCTTTTTAAAAAGATATATGTCCATCAATTATTGAATCATCTCACATAAAATGGAACACAGAAAATATATCATATCAACAAAAGTTTAGCTAATTCTACTTTTCCTATGGTGAGTGTATTTTTGTGTCTGCTCTTTTTATCTGTCTAAGATAATAACAATAACATACTTAATATAATCTTATAACAGAAGTCTCGAAAGTACAGAATGTACATATATTTTATGTCTATTTTGTAGAAATCAAATCACTAAAAACAGTTTCATCTTTTATCTATCTACCTTCTACCATTTCCAAATTTATACTTTCCAATCTTGACAAGTATGTTAGATAGACTTCTGTAGTTCATGTTTGTAATTGAATACATCGTGTAATTCAAGGTTTATACTCCCTCTAGTCCCAATTATCAATCGTTTGACAAGTTGAAATTATTTATAAATATTAGTATCCATTTTAGAAATACAAGAAATGATTTGTTAATCCTTTCGTTTCAATTTATGTGTCATAATTTGATTTTGTACAAACTTTAGAAAAAAAAGTACATACGTCTACAAGTTTTGGTCTGTAACATCCCAAAACATATATGTAACTTTTATAAGATGTGTATACATTAAAAACTTCAGATTAAAAATGTGTCATTATTTTGAAGCATATAAAAAAAATTTGATACATTTAGCTAAAATTATATATTTATTTCGAGAAATTCATTTAACATAAATAAATTCTTGTTTTACAACCAACTTAATGATTTAGAATTCAAAAGTTATATACTCTAAATCTTAATTCCGCTTATTGTTAATTAATATAAAAAGTAGAGGGGAACAATCTTGGGTTAGCTTAAAATAAATGGAATTAGTTTCCTAAATTAGAAGGTATATAACGTAAGCAGCCGCAAATTATTATTTGCTCTCTTTTAAAAATAACTTATCCATCAATAGGGCAAATTAGGTGATTAGTGGAGCTAATTGGTAGGTCTAAATCCTGTCTCAACTCTTAGTGACATGTAAAGGTGGGTTCCACATTTGGTGAAGGTGAATGCATGTGTGTCTGCTAAGTTTCCAATCGCCCACAACATTTGGCCAATGAAACCACTGGTATTAATTAATTACTCATTAGATGGTGGATCCTTCTTTAAGATAGAATCTCATTAGCACTAATTAATATTTTTTTTAAAAAAAAAATGTTTCTGGAGATAGGATTTGGGGTGGGGGTTGAACGGAGTTAGATGCAACTTGTGCAATTTGACACTGCTGAGCTTATAAACAATAATATACCGTAATGGTGAGAAAATTTAAAGAAGTTATAAGTTAATATATTAAACAAATTTGTTACTTTTAGTTTTTTATAACTATTATATTTAAACCAACTTGCATGTATCTAATTAATTACGTATATGTAGTTAATTATATAAAAGTCAAATTTTATTTCTTTTTAGTCTAAGAGGTAAGGGATTTGATCTTAATGGTAAAAGTATAACGTGTGATATTCAAAATGGAGAAGATCAGAAAGATGAATTCATTATCCATTGAACTGTGAATCATGCATCACTGATCCTTGTTGTTTTTCGATTTTAATAAAAAAATATTTGACCTTTGTATTAATATAATTAATGGTGCCTAGATCCTTAGAAGCAGGGAAGGGAGAAAGAATGATACTACTTTTGTAAATTAATTTGATATGAGGTGGGGAGACTGAAAGGCTATGCTTTTATTGTCAACTATCAGAAACTCTACAACTCATTTTGATCATCTAAGTTGGTTAGACTTTTTTAATTTGTTATTACGATTCATTTAAAATGCACTATTTTAAAAGACCTGACATGCAATTTTCTATATTTTTGAAATGTCCGATCGGTATAGAAATAAATTCTCCTTTCAACTAAAAGGGTGGTTTAATCTATGATTTTTTGCCAATAAGATATATTGATTTGGAATAGGACATACAATGTGGATGCTTTGACCTCGAAAAAAGGCAATTTATTCTCTATTAATTTTTTAAAATAATTATAATCTACTCTACGTTAGGTTTAGGTCTACTATTAGACCTTTAATCGTTGTATTAGTTTCTTAAGTTAATGTGTGTATGAACTAAGTCATGATCATTATGTCACACAAACTTGAATGGGTCAATAAAGTTGTGTTGCGGTTCCTTTATTCATTTTTTCTACTTATGGTAATTGATATATGAGAGGTTGGAGTGTGCTTCTTTGAGCACTGAGTCTATTCCATTAGTTATGTTGTAGTTTTCTTTTCTTCAACCCAAATAAAACAATAAATAAATTAATTAATTAAACGAGCACAACTTGGGACTTATTATTCATTTTATTTCATTTTATATGGTATCATTTTTATTAAAAAATTTATTCCATGAATAATTACGATAACATATATGTATAATATCACAAATAGAATATAGGGAGGACAATATGTACTTCTTTACTAGGTGATGAAACTTTAGGCTAAGAAAAAATTATTTGAAGTAAGATTGTCAAAAAATATTTGAAACAGAATATTGTATAATTATGTAGTAATGTAATAGAAAGAATTGAAAAACTTTCAGGGGCCAAAAAGTATTTTGTGGTCTCTGTAAATTATACGAGTAGAGATATAAGTTTTGGAATTATTAATTGATTTTATAGAACAAGTTGTCACTTGGGCCCAATGAGCAATATAGATATTAGAGTATTATTTTGTTGTTTCCTTAATCATAATCTTAGTAAGAAGCTCCTTATTGGAGGAAGTGAGCATTTCTTTTGTGGGGTCCAAACTTTCAAATATAGCAAGTTGACATTATATAAAATATAAAATTCTAGTAAAAGTAGCAACTAGCCAATAAAATAATGAATAAAGGAAAGGGAAGGAGTTTTGTCCCTTTATTTAATTGATGGTGATTGTGCCTACGATTCTTTGAATCCATTTTTTACTTATTTTGAGGTCAAGATGCATTCACCAAACAGCTCCTAAAATTCCATGACTGGTCAGTTATCACGTGCATGGGTATTTACTTGACCCGTTTATTCCCACTTGCTCTATCCATTATTATTATTATTATTATCTTAGCCGCCACCTAAAACCAGCCCAATGTTTTTGAGTGCTTTACTAGTTCTAAGATATTTTCTGAAAGTTTTACAGTCGACTGTTAGCAGATGATCCTGTTTTTATTTGTTGGTGTAATTTATGATTCTTCATATAAGAAATGCTTTGATTATGATCTTAAATTTTGTAGACAATAAACAAACTTCAATGTTTTGTTAGTTTCAAAGGCTTATATTTTCACAACTTGTGAAAATAGTGATTAAATTTAAATGATGACTTATTTTAAAAAATTTTTAAATCAAGGACTTTCTCATTTACTATTCATATTTTGTTTTGTCTAGTGGTTAACGAAGGAGGTTTAAGCATTATAAGGTCCTAGGTTCAGTTCCTAACAAAGAGAAAACACTAGGTGATATTTTCCCTCATATATCCCATGAAATGGAGCTTTAGTAGATCAGTTAGTTTTGAGTTGAGGGTCTATCGAAAACAATCTCTCTACCCCACAAGGTAGGATAAGGTGTGTGTATCTTATTTTCGTTGGTTTTATCTTTAGTTTGAGTAGTAATATTCATACCTTGTCAAACAAAGACTTCAAATTAGATATCAAATGGAAGTCTAACAATTTGATGTGGAAAAGAGGATCTCTTTTATGTTATGTCTGTAATATACTTTAATTTTGTCAAAGAAGACCTTAATATATAGAGCCAAAAGAGACCAAATACTTTTCCATGGAGACTACAAGGGTCACACCAGAACTATCAGCTTTTGAGATGACATTTTTGAATCAAACTCACGAAAAGATTCATATCTAATATGTTGTAAAGGTTTTAATTTGGTAAAAAGAACTCGTTACCATAACTTGTAGTATAATTCAAGTTTGACTTGACGTTAGGATTTTCAGTTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGA</genome_strand>
        <mrna_strand>AACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCTGGAGGAGGAGTTTTGCCGACGACTTCAACGACGCCGTTGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302507" ref_strand="+" ref_description="SGN-E302507 [cLEX-1-A23](-)">
      <seq>tggttcgacatagtagctcaccggcgaggttccttaatcaacttgctactgctgcaggtgatactgtttcaatggggagaggaagctataacccaaaaggcggtggagatagtggccggggaataacaaggctgaactctcagctcagcttcacaacgcaagaagctctttctcaaatagcagaggaaaatgaggatattgaagggaccagtatagccaatggccacagaaagtcaacacattcttatgccagtgcaagtagtttcgcgatgggttcttgggaagataacaactctataatgttctctgtcacacctagcaaacgatccaagcagattagcaatgacattgtcaatgggctcgatgacggggaaactcagctaatatgaacttgaaggtcactatcagaaaacacataaaccttcaccgtttgacatctgtgttttcaacatgtaaacggcgatagatatacttcctttacatttttccccttaacaaccttacaactacattctgtgtatgtgtttcttttctttctgcagaagtatgtaaaataaaatagacaaaataatccatgttggcatactcaatcatgtttctcgtgtgtaactcacacaaaaattgatgaaaactgcatttttattacttgtgggaggatgaactgatgtttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="41842" stop="48423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42142" g_stop="42207" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42208" i_stop="47175" i_length="4968">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47176" g_stop="47489" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="380" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47490" i_stop="47828" i_length="339">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47829" g_stop="48131" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="683" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E302507" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42142" e_stop="42207"/>
          <exon e_start="47176" e_stop="47489"/>
          <exon e_start="47829" e_stop="48131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTGGTAAGTTTTCAACTTCCCTTTTTTTCCTAATTGATATGTCAAATGACGAATTTAACCTTCCTGTATATGATTCCTTTCTGTTTGCTTTTTTTTTTTTCCTGCTAAAGTCATCAGCATTTGGTAACTTTTTTAACCAATCAGAGTAGACTTTGCTAATTGACTAATCACAACTAACTTTGCATAAATTAACAAACTTTGAAATGCATTTTACATTTTAAAGTATTCCCTGGTTACATTTTGTCCACATGACAAAGTTAATTTCGACACAAAATTTAAGAAAGAAATAATATTTTTATAGTTAAACATGTTAGAATAATTTTATAGCTATTTAAATCGTAAAAATAATTTCTTACAAAAATGTTAAATTGAATTACGAACAATAAGCTCTTGTGATCTGTTTTTTTTCCAAACCCCAGACACAGCAGAAGCTTAATTAATGCGTTGAGTTACCTTTTAAAGAAAGTGTAATTAGCTACCGATGAAATGAGAAAGTAGGTTTCTTGCAGATAGAACCAATTAATGGAGGATTAACTTATATTAATCATCTCATTGGACTTCATTAACTTCTAAATGAATTGTCATGAGATTACAGTACAAAAGTAAGATTTACTTATGTCACAATTAGACGTTATAAACTGACTAGTTGAGCACTTAAACATAAATAATTACTCAAAAAAGGACACATATAGAGTAAGTGGGGAAATATGCTAAGAGTAATTGAGTTTGTCTTATCTAATTACATATAACAAGTTGCTAAAAAAAATTTACCAAAAGATTAAAAGAGTTATGTACATGTTTAAGGATATACTTAGTACTCGAAGAATCTTTAATACCTCCTTACAACTTGCAAACTCATTTTTTCTTTCCCTCCATATGATTAGTACTTTTAACTTCTAATCTTAAAAAAGAAGTACTACTTCATTTGTCCCACTTCATGCAGTTACTAAAATGGTGAGCTAAAAGGAATTCTATAAAAATTTTGAACTATGAATTATTAAATTTATATTACATTTTAAGCAATTTTAAATATGTAATTTCTTTTTAAAAAGATATATGTCCATCAATTATTGAATCATCTCACATAAAATGGAACACAGAAAATATATCATATCAACAAAAGTTTAGCTAATTCTACTTTTCCTATGGTGAGTGTATTTTTGTGTCTGCTCTTTTTATCTGTCTAAGATAATAACAATAACATACTTAATATAATCTTATAACAGAAGTCTCGAAAGTACAGAATGTACATATATTTTATGTCTATTTTGTAGAAATCAAATCACTAAAAACAGTTTCATCTTTTATCTATCTACCTTCTACCATTTCCAAATTTATACTTTCCAATCTTGACAAGTATGTTAGATAGACTTCTGTAGTTCATGTTTGTAATTGAATACATCGTGTAATTCAAGGTTTATACTCCCTCTAGTCCCAATTATCAATCGTTTGACAAGTTGAAATTATTTATAAATATTAGTATCCATTTTAGAAATACAAGAAATGATTTGTTAATCCTTTCGTTTCAATTTATGTGTCATAATTTGATTTTGTACAAACTTTAGAAAAAAAAGTACATACGTCTACAAGTTTTGGTCTGTAACATCCCAAAACATATATGTAACTTTTATAAGATGTGTATACATTAAAAACTTCAGATTAAAAATGTGTCATTATTTTGAAGCATATAAAAAAAATTTGATACATTTAGCTAAAATTATATATTTATTTCGAGAAATTCATTTAACATAAATAAATTCTTGTTTTACAACCAACTTAATGATTTAGAATTCAAAAGTTATATACTCTAAATCTTAATTCCGCTTATTGTTAATTAATATAAAAAGTAGAGGGGAACAATCTTGGGTTAGCTTAAAATAAATGGAATTAGTTTCCTAAATTAGAAGGTATATAACGTAAGCAGCCGCAAATTATTATTTGCTCTCTTTTAAAAATAACTTATCCATCAATAGGGCAAATTAGGTGATTAGTGGAGCTAATTGGTAGGTCTAAATCCTGTCTCAACTCTTAGTGACATGTAAAGGTGGGTTCCACATTTGGTGAAGGTGAATGCATGTGTGTCTGCTAAGTTTCCAATCGCCCACAACATTTGGCCAATGAAACCACTGGTATTAATTAATTACTCATTAGATGGTGGATCCTTCTTTAAGATAGAATCTCATTAGCACTAATTAATATTTTTTTTAAAAAAAAAATGTTTCTGGAGATAGGATTTGGGGTGGGGGTTGAACGGAGTTAGATGCAACTTGTGCAATTTGACACTGCTGAGCTTATAAACAATAATATACCGTAATGGTGAGAAAATTTAAAGAAGTTATAAGTTAATATATTAAACAAATTTGTTACTTTTAGTTTTTTATAACTATTATATTTAAACCAACTTGCATGTATCTAATTAATTACGTATATGTAGTTAATTATATAAAAGTCAAATTTTATTTCTTTTTAGTCTAAGAGGTAAGGGATTTGATCTTAATGGTAAAAGTATAACGTGTGATATTCAAAATGGAGAAGATCAGAAAGATGAATTCATTATCCATTGAACTGTGAATCATGCATCACTGATCCTTGTTGTTTTTCGATTTTAATAAAAAAATATTTGACCTTTGTATTAATATAATTAATGGTGCCTAGATCCTTAGAAGCAGGGAAGGGAGAAAGAATGATACTACTTTTGTAAATTAATTTGATATGAGGTGGGGAGACTGAAAGGCTATGCTTTTATTGTCAACTATCAGAAACTCTACAACTCATTTTGATCATCTAAGTTGGTTAGACTTTTTTAATTTGTTATTACGATTCATTTAAAATGCACTATTTTAAAAGACCTGACATGCAATTTTCTATATTTTTGAAATGTCCGATCGGTATAGAAATAAATTCTCCTTTCAACTAAAAGGGTGGTTTAATCTATGATTTTTTGCCAATAAGATATATTGATTTGGAATAGGACATACAATGTGGATGCTTTGACCTCGAAAAAAGGCAATTTATTCTCTATTAATTTTTTAAAATAATTATAATCTACTCTACGTTAGGTTTAGGTCTACTATTAGACCTTTAATCGTTGTATTAGTTTCTTAAGTTAATGTGTGTATGAACTAAGTCATGATCATTATGTCACACAAACTTGAATGGGTCAATAAAGTTGTGTTGCGGTTCCTTTATTCATTTTTTCTACTTATGGTAATTGATATATGAGAGGTTGGAGTGTGCTTCTTTGAGCACTGAGTCTATTCCATTAGTTATGTTGTAGTTTTCTTTTCTTCAACCCAAATAAAACAATAAATAAATTAATTAATTAAACGAGCACAACTTGGGACTTATTATTCATTTTATTTCATTTTATATGGTATCATTTTTATTAAAAAATTTATTCCATGAATAATTACGATAACATATATGTATAATATCACAAATAGAATATAGGGAGGACAATATGTACTTCTTTACTAGGTGATGAAACTTTAGGCTAAGAAAAAATTATTTGAAGTAAGATTGTCAAAAAATATTTGAAACAGAATATTGTATAATTATGTAGTAATGTAATAGAAAGAATTGAAAAACTTTCAGGGGCCAAAAAGTATTTTGTGGTCTCTGTAAATTATACGAGTAGAGATATAAGTTTTGGAATTATTAATTGATTTTATAGAACAAGTTGTCACTTGGGCCCAATGAGCAATATAGATATTAGAGTATTATTTTGTTGTTTCCTTAATCATAATCTTAGTAAGAAGCTCCTTATTGGAGGAAGTGAGCATTTCTTTTGTGGGGTCCAAACTTTCAAATATAGCAAGTTGACATTATATAAAATATAAAATTCTAGTAAAAGTAGCAACTAGCCAATAAAATAATGAATAAAGGAAAGGGAAGGAGTTTTGTCCCTTTATTTAATTGATGGTGATTGTGCCTACGATTCTTTGAATCCATTTTTTACTTATTTTGAGGTCAAGATGCATTCACCAAACAGCTCCTAAAATTCCATGACTGGTCAGTTATCACGTGCATGGGTATTTACTTGACCCGTTTATTCCCACTTGCTCTATCCATTATTATTATTATTATTATCTTAGCCGCCACCTAAAACCAGCCCAATGTTTTTGAGTGCTTTACTAGTTCTAAGATATTTTCTGAAAGTTTTACAGTCGACTGTTAGCAGATGATCCTGTTTTTATTTGTTGGTGTAATTTATGATTCTTCATATAAGAAATGCTTTGATTATGATCTTAAATTTTGTAGACAATAAACAAACTTCAATGTTTTGTTAGTTTCAAAGGCTTATATTTTCACAACTTGTGAAAATAGTGATTAAATTTAAATGATGACTTATTTTAAAAAATTTTTAAATCAAGGACTTTCTCATTTACTATTCATATTTTGTTTTGTCTAGTGGTTAACGAAGGAGGTTTAAGCATTATAAGGTCCTAGGTTCAGTTCCTAACAAAGAGAAAACACTAGGTGATATTTTCCCTCATATATCCCATGAAATGGAGCTTTAGTAGATCAGTTAGTTTTGAGTTGAGGGTCTATCGAAAACAATCTCTCTACCCCACAAGGTAGGATAAGGTGTGTGTATCTTATTTTCGTTGGTTTTATCTTTAGTTTGAGTAGTAATATTCATACCTTGTCAAACAAAGACTTCAAATTAGATATCAAATGGAAGTCTAACAATTTGATGTGGAAAAGAGGATCTCTTTTATGTTATGTCTGTAATATACTTTAATTTTGTCAAAGAAGACCTTAATATATAGAGCCAAAAGAGACCAAATACTTTTCCATGGAGACTACAAGGGTCACACCAGAACTATCAGCTTTTGAGATGACATTTTTGAATCAAACTCACGAAAAGATTCATATCTAATATGTTGTAAAGGTTTTAATTTGGTAAAAAGAACTCGTTACCATAACTTGTAGTATAATTCAAGTTTGACTTGACGTTAGGATTTTCAGTTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAGGTAATATAACTGTAACTTTGTGAAAGTATGTTTCTCTGATAAAATTGTATTTTTAGTTGAGTGTTTAAGGGTCATGTTTTCTTTATCCTGAATTCTAGAGTTGTGCATGTGATATGCCTAACGTTAACAATATTTATGTGAAAAGTGAGATGTAATTTTAATGATGTTAGCCTTCTAGATGAAAAAATGTCATGTGCTTTGATTTGGTGATCTTACAACTGATTCAAAATCTGTTTTTTCTCCTTCAACACGCTATTTGAAATCTTTCAAAAAGTTGATGATTTGGTTTTTGCTTGCATTCTTTTGTCTCTAATTCCCTACCTTTCTTCTTTCTTCCAGCTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAA</genome_strand>
        <mrna_strand>TGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG...................................................................................................................................................................................................................................................................................................................................................CTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368037" ref_strand="+" ref_description="SGN-E368037 [TUS-22-N1]">
      <seq>gagaggaagctataacccaaaaggcggtggagatagtggccggggaataacaaggctgaactctcagctcagcttcacaacgcaagaagctctttctcaaatagcagaggaaaatgaggatattgaagggaccagtatagccaatggccacagaaagtcaacacattcttatgccagtgcaagtagtttcgcgatgggttcttgggaagataacaactctataatgttctctgtcacacctagcaaacgatccaagcagattagcaatgacattgtcaatgggctcgatgacggggaaactcagtttcagtttggcttgtctcagacagctctagaaatagcatctatggatagattgctgcacatccccgaggattctgttccttgcaaaattcgtgccaagcgtggttgtgctactcatcctcgcagcattgcagaaagggagagaagaaccagaattagtgggaaactaaagaagttacaagatcttgttccaaacatggacaagcaaacgagctatgctgacatgctggatctagcagtgcagcatattcgaacccttcaagatcaggttcagaatctgaatacagaacttgaaaactgcaaatgtggatgtaggaaatcaagtcaataacaaaatgggaggaagcactttagctgaagattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="46886" stop="49611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47186" g_stop="47489" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47490" i_stop="48141" i_length="652">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48142" g_stop="48279" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="442" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48280" i_stop="48624" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48625" g_stop="48690" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="508" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48691" i_stop="48820" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48821" g_stop="48889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="577" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48890" i_stop="49219" i_length="330">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49220" g_stop="49311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="669" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E368037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47186" e_stop="47489"/>
          <exon e_start="48142" e_stop="48279"/>
          <exon e_start="48625" e_stop="48690"/>
          <exon e_start="48821" e_stop="48889"/>
          <exon e_start="49220" e_stop="49311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAGGTAATATAACTGTAACTTTGTGAAAGTATGTTTCTCTGATAAAATTGTATTTTTAGTTGAGTGTTTAAGGGTCATGTTTTCTTTATCCTGAATTCTAGAGTTGTGCATGTGATATGCCTAACGTTAACAATATTTATGTGAAAAGTGAGATGTAATTTTAATGATGTTAGCCTTCTAGATGAAAAAATGTCATGTGCTTTGATTTGGTGATCTTACAACTGATTCAAAATCTGTTTTTTCTCCTTCAACACGCTATTTGAAATCTTTCAAAAAGTTGATGATTTGGTTTTTGCTTGCATTCTTTTGTCTCTAATTCCCTACCTTTCTTCTTTCTTCCAGCTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAACCATTTTCAGTTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGGGTGATCTTCATATTTCTTAAGCCATTCCTTTACTTGGCCCTTATAATGAACAAAAAAATAAAAATCCAATTGAACTTTATCAATTTATTTTTCCCCTGCTTCATTTCATTTGATATGGCTTCGATTGAGAATGAATTTCAAGATACTATCTGAAGCTGATGAAACTCTTCCAGCCACTGATTTTAAATGCCAACTTTGCTATTATGTAACAATAGATTTAATTGTCAACATGTAGTAGTTGTGGCATTTGAAATACTTTTCCTCAAAATTTGGATCATCATAGCTATGTTTTGCTTTTACTAATACACAATAATGAACGTTGTATTCTTTTCTCATCTTATGCAGGAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAGGTATAGTTTGCTTCCACTCCACAATATTTTCTCAATTGGAGCTTATTGGAACATGTTTTAGCTGTAAATTTTGTCGCAGCAAACGAGCTACACTCCAATATTAACAACATTTTCTTGTTTGTTTTCGCAGCAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAGGTGAGTGATCAAAATGATCAACCTTACTGCTTTGCAGCTTTACCTAAATTACTTATACTCTATGTTCCTTACACTCTTCAAAGAAACAGCCAGTGTGTTGGATTAGATCCTCCAAAAGCTATTAGTACAACAATTTTGGCCCGAGCAACATATCTTGTATTCTCACATGAGTTTACACCAAACCGAACAATTTAACCTTAATGTATTTGGGATAGATGATGTCTAATATGTTTTGCAAATAAAAAATGATAAATTTTCTAGCCCCACCTTTATAGCTGTGTGATTGAAATAGTCGAAATATAATTTTCACGTTTTCTTATTCTTATGCAGAATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGAC</genome_strand>
        <mrna_strand>GAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................GAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAG..................................................................................................................................CAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................AATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241002" ref_strand="+" ref_description="SGN-E241002 [cLED-24-D22]">
      <seq>gagaggaagctataacccaaaaggcggtggagatagtggccggggaataacaaggctgaactctcagctcagcttcacaacgcaagaagctctttctcaaatagcagaggaaaatgaggatattgaagggaccagtatagccaatggccacagaaagtcaacacattcttatgccagtgcaagtagtttcgcgatgggttcttgggaagataacaactctataatgttctctgtcacacctagcaaacgatccaagcagattagcaatgacattgtcaatgggctcgatgacggggaaactcagtttcagtttggcttgtctcaaacagctctagaaatagcatctatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="46886" stop="48490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47186" g_stop="47489" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47490" i_stop="48141" i_length="652">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48142" g_stop="48190" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="353" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E241002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47186" e_stop="47489"/>
          <exon e_start="48142" e_stop="48190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAGGTAATATAACTGTAACTTTGTGAAAGTATGTTTCTCTGATAAAATTGTATTTTTAGTTGAGTGTTTAAGGGTCATGTTTTCTTTATCCTGAATTCTAGAGTTGTGCATGTGATATGCCTAACGTTAACAATATTTATGTGAAAAGTGAGATGTAATTTTAATGATGTTAGCCTTCTAGATGAAAAAATGTCATGTGCTTTGATTTGGTGATCTTACAACTGATTCAAAATCTGTTTTTTCTCCTTCAACACGCTATTTGAAATCTTTCAAAAAGTTGATGATTTGGTTTTTGCTTGCATTCTTTTGTCTCTAATTCCCTACCTTTCTTCTTTCTTCCAGCTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAACCATTTTCAGTTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATA</genome_strand>
        <mrna_strand>GAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTTGGCTTGTCTCAAACAGCTCTAGAAATAGCATCTATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228508" ref_strand="+" ref_description="SGN-E228508 [cLED-3-B10]">
      <seq>agtggccggggaataacaaggctgaactctcagctcagcttcacaacgcaagaagctctttctcaaatagcagaggaaaatgaggatattgaagggaccagtatagccaatggccacagaaagtcaacacattcttatgccagtgcaagtagtttcgcgatgggttcttgggaagataacaactctataatgttctctgtcacacctagcaaacgatccaagcagattagcaatgacattgtcaatgggctcgatgacggggaaactcagtttcagtttggcttgtctcagacagctctagaaatagcatctatggatagattgctgcacatccccgaggattctgttcctttgcaaaattcgtgccaagcgtggttgtgctactcatcctcgcagcattgcagaaagggagagaagaaccagaattagtgggaaactaaagaagttacaagatcttgttccaaacatggacaagcaaacgagctatgctgacatgctggatctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="46920" stop="49153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47220" g_stop="47489" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47490" i_stop="48141" i_length="652">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48142" g_stop="48279" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="409" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48280" i_stop="48624" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48625" g_stop="48690" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="475" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48691" i_stop="48820" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48821" g_stop="48853" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="508" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E228508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47220" e_stop="47489"/>
          <exon e_start="48142" e_stop="48279"/>
          <exon e_start="48625" e_stop="48690"/>
          <exon e_start="48821" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAGGTAATATAACTGTAACTTTGTGAAAGTATGTTTCTCTGATAAAATTGTATTTTTAGTTGAGTGTTTAAGGGTCATGTTTTCTTTATCCTGAATTCTAGAGTTGTGCATGTGATATGCCTAACGTTAACAATATTTATGTGAAAAGTGAGATGTAATTTTAATGATGTTAGCCTTCTAGATGAAAAAATGTCATGTGCTTTGATTTGGTGATCTTACAACTGATTCAAAATCTGTTTTTTCTCCTTCAACACGCTATTTGAAATCTTTCAAAAAGTTGATGATTTGGTTTTTGCTTGCATTCTTTTGTCTCTAATTCCCTACCTTTCTTCTTTCTTCCAGCTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAACCATTTTCAGTTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCC-TTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGGGTGATCTTCATATTTCTTAAGCCATTCCTTTACTTGGCCCTTATAATGAACAAAAAAATAAAAATCCAATTGAACTTTATCAATTTATTTTTCCCCTGCTTCATTTCATTTGATATGGCTTCGATTGAGAATGAATTTCAAGATACTATCTGAAGCTGATGAAACTCTTCCAGCCACTGATTTTAAATGCCAACTTTGCTATTATGTAACAATAGATTTAATTGTCAACATGTAGTAGTTGTGGCATTTGAAATACTTTTCCTCAAAATTTGGATCATCATAGCTATGTTTTGCTTTTACTAATACACAATAATGAACGTTGTATTCTTTTCTCATCTTATGCAGGAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAGGTATAGTTTGCTTCCACTCCACAATATTTTCTCAATTGGAGCTTATTGGAACATGTTTTAGCTGTAAATTTTGTCGCAGCAAACGAGCTACACTCCAATATTAACAACATTTTCTTGTTTGTTTTCGCAGCAAACGAGCTATGCTGACATGCTGGATCTAGCA</genome_strand>
        <mrna_strand>AGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................GAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAG..................................................................................................................................CAAACGAGCTATGCTGACATGCTGGATCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368036" ref_strand="+" ref_description="SGN-E368036 [TUS-22-N1](-)">
      <seq>gtcaatgggctcgatgacggggaaactcagtttcagtttggctttgtctcagacagctctagaaatagcatctatggatagattgctgcacatccccgaggattctgttccttgcaaaattcgtgccaagcgtggttgtgctactcatcctcgcagcattgcagaaagggagagaagaaccagaattagtgggaaactaaagaagttacaagatcttgttccaaacatggacaagcaaacgagctatgctgacatgctggatctagcagtgcagcatattcgaacccttcaagatcaggttcagaatctgaatacagaacttgaaaactgcaaatgtggatgtaggaaatcaagtcaataacaaaatgggaggaagcactttagctgaagattgacttaaaaggatttttgtcaccattattttgcttcttagaaactcaaatttgtacatatggaagtaaatttcatactagttttttaaagctaaaaagtgaactctctttgtttttttttcttttcccttttccagttagaagactacgtatatgattgttttggattatttctagttttcttttttcatctaacatttacatttttaatttatttttgagtttattttgcttgaagatcataaaagctaattgatgatgttgtacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="47160" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47460" g_stop="47489" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47490" i_stop="48141" i_length="652">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48142" g_stop="48279" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="169" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48280" i_stop="48624" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48625" g_stop="48690" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="235" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48691" i_stop="48820" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48821" g_stop="48889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="304" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48890" i_stop="49219" i_length="330">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49220" g_stop="49575" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="660" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49576" i_stop="50411" i_length="836">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50412" g_stop="50431" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="680" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E368036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47460" e_stop="47489"/>
          <exon e_start="48142" e_stop="48279"/>
          <exon e_start="48625" e_stop="48690"/>
          <exon e_start="48821" e_stop="48889"/>
          <exon e_start="49220" e_stop="49575"/>
          <exon e_start="50412" e_stop="50431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGGCTCGATGACGGGGAAACTCAGGTAATATAACTGTAACTTTGTGAAAGTATGTTTCTCTGATAAAATTGTATTTTTAGTTGAGTGTTTAAGGGTCATGTTTTCTTTATCCTGAATTCTAGAGTTGTGCATGTGATATGCCTAACGTTAACAATATTTATGTGAAAAGTGAGATGTAATTTTAATGATGTTAGCCTTCTAGATGAAAAAATGTCATGTGCTTTGATTTGGTGATCTTACAACTGATTCAAAATCTGTTTTTTCTCCTTCAACACGCTATTTGAAATCTTTCAAAAAGTTGATGATTTGGTTTTTGCTTGCATTCTTTTGTCTCTAATTCCCTACCTTTCTTCTTTCTTCCAGCTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAACCATTTTCAGTTTCAGTTTGGC-TTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGGGTGATCTTCATATTTCTTAAGCCATTCCTTTACTTGGCCCTTATAATGAACAAAAAAATAAAAATCCAATTGAACTTTATCAATTTATTTTTCCCCTGCTTCATTTCATTTGATATGGCTTCGATTGAGAATGAATTTCAAGATACTATCTGAAGCTGATGAAACTCTTCCAGCCACTGATTTTAAATGCCAACTTTGCTATTATGTAACAATAGATTTAATTGTCAACATGTAGTAGTTGTGGCATTTGAAATACTTTTCCTCAAAATTTGGATCATCATAGCTATGTTTTGCTTTTACTAATACACAATAATGAACGTTGTATTCTTTTCTCATCTTATGCAGGAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAGGTATAGTTTGCTTCCACTCCACAATATTTTCTCAATTGGAGCTTATTGGAACATGTTTTAGCTGTAAATTTTGTCGCAGCAAACGAGCTACACTCCAATATTAACAACATTTTCTTGTTTGTTTTCGCAGCAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAGGTGAGTGATCAAAATGATCAACCTTACTGCTTTGCAGCTTTACCTAAATTACTTATACTCTATGTTCCTTACACTCTTCAAAGAAACAGCCAGTGTGTTGGATTAGATCCTCCAAAAGCTATTAGTACAACAATTTTGGCCCGAGCAACATATCTTGTATTCTCACATGAGTTTACACCAAACCGAACAATTTAACCTTAATGTATTTGGGATAGATGATGTCTAATATGTTTTGCAAATAAAAAATGATAAATTTTCTAGCCCCACCTTTATAGCTGTGTGATTGAAATAGTCGAAATATAATTTTCACGTTTTCTTATTCTTATGCAGAATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGTACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTTTTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCTAGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTGAAGATCATAAAAGCTAATTGATGATGTTGTACAACTACTTTCTCTATTTCATTTTTATGTTCTTCTTGGGAAACAACCATTTACAATTTGAAATCCAACTCTACTCTACAAGGATTTCATGTGTTTTATTTATCGAACTGTTCATTTTCTGTGAAACAAGTCATTTAATTAATATAACGTTTGTATTGAGCCATAAAATCTATTTTTCCCTTCTTACTTGTGTATATCATGAATAAATGTGATTTATCAATGCGGCACTTTAGGATATTTTAATATTTTGCTCATGAATGATGATTTGCTCATTCAGTAATATTGCATAAGAATTGAGTAACTTTTGATATCAATGTGATCTATATTTTGCATATACAATCAAAATTTCAACTTCATATCAATAAGAATTTATATCGCATTATCCAAATGGGGCCCTACATTTGTAATTTTTATATCGCACTTGTCCTGTTAATCAAGTGTGAAAGATGAGCAAAATGAATCAGGCTGAATAAAAGTTCATTGTTCGAGGGATTTTGTGAGTGTATTTTCCTTGAGAAAAAGACAAATAATATGGTTGTATTATTGAGCCACTTTACAGATACCACCAAAGGCAACTTGCTACTGCAATTCATCTCTTGTAAGAATTATTAGAGAGAGAGAGAGAGAGGGAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACA</genome_strand>
        <mrna_strand>GTCAATGGGCTCGATGACGGGGAAACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTTGGCTTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGG.........................................................................................................................................................................................................................................................................................................................................................GAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAG..................................................................................................................................CAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................AATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGTACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTTTTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCTAGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTGAAGATCATAAAAGCTAATTGATGATGTTGTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302680" ref_strand="+" ref_description="SGN-E302680 [cLEY-1-C15]">
      <seq>caagatcttgttccaaacatggacaagcaaacgagctatgctgacatgctggatctagcagtgcagcatattcgaacccttcaagatcaggttcagaatctgaatacagaacttgaaaactgcaaatgtggatgtaggaaatcaagtcaataacaaaatgggaggaagcactttagctgaagattgacttaaaaggatttttgtcaccattattttgcttcttagaaactcaaatttgtacatatggaagtaaatttcatactagttttttaaagctaaaaagtgaactctctttgtttttttttcttttcccttttccagttagaagactacgtatatgattgttttggattatttctagttttcttttttcatctaacatttacatttttaatttatttttgagtttattttgcttgaagatcattnnnnanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="48364" stop="49850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48664" g_stop="48690" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48691" i_stop="48820" i_length="130">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48821" g_stop="48889" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="96" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48890" i_stop="49219" i_length="330">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49220" g_stop="49548" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="425" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="450"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E302680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48664" e_stop="48690"/>
          <exon e_start="48821" e_stop="48889"/>
          <exon e_start="49220" e_stop="49548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCTTGTTCCAAACATGGACAAGGTATAGTTTGCTTCCACTCCACAATATTTTCTCAATTGGAGCTTATTGGAACATGTTTTAGCTGTAAATTTTGTCGCAGCAAACGAGCTACACTCCAATATTAACAACATTTTCTTGTTTGTTTTCGCAGCAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAGGTGAGTGATCAAAATGATCAACCTTACTGCTTTGCAGCTTTACCTAAATTACTTATACTCTATGTTCCTTACACTCTTCAAAGAAACAGCCAGTGTGTTGGATTAGATCCTCCAAAAGCTATTAGTACAACAATTTTGGCCCGAGCAACATATCTTGTATTCTCACATGAGTTTACACCAAACCGAACAATTTAACCTTAATGTATTTGGGATAGATGATGTCTAATATGTTTTGCAAATAAAAAATGATAAATTTTCTAGCCCCACCTTTATAGCTGTGTGATTGAAATAGTCGAAATATAATTTTCACGTTTTCTTATTCTTATGCAGAATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGTACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTTTTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCTAGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTGAAGATC</genome_strand>
        <mrna_strand>CAAGATCTTGTTCCAAACATGGACAAG..................................................................................................................................CAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAG..........................................................................................................................................................................................................................................................................................................................................AATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGTACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTTTTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCTAGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331265" ref_strand="+" ref_description="SGN-E331265 [cTOD-6-J11]">
      <seq>atagagagagagagagagggagctcttccttcttccttcaaacattcaaaccttcatccatttcatttcattaaaccttttctctaacttctcctaatacgtgaactcggaaaatatatctttgttgaaatccgaatctgagaactatgactctcatttttaccccataatgtttgtttcttctcttgatgaagtcagctttcaattttatttatgattgatgaatcagaaaattgaagataataaacaggcataagagaagacaaaagttaactaactgaagtcttgtacggaagatggctcaaaatgaaattgaagatatgttagatcacctgagaaggatcaagagtggaggtaatctggatagggtcaagatcaatcgaattgagaaacttgaaatggtgttcaagtatcatcatgttcttttgcctgattccatcgtcaaactcaaaaagaaggacaaatggattgcgaaaatggttcagtgggtattggatggaattccggatgaatgtaaaactaaccttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="49883" stop="51266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50183" g_stop="50461" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50462" i_stop="50713" i_length="252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.281" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50714" g_stop="50966" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="532" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E331265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50183" e_stop="50461"/>
          <exon e_start="50714" e_stop="50966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGAGAGAGAGGGAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAAGTTAACTAACTGTAAGTCATCTTCTTCATGAATTACTTTTTCCTATTGATACAAAATTAATAGTGTTATTATATTAGGAAGCCAGTTTCTTTGTTGACGAAAACTGAAATCAAGAAAAAAAGTCTGAGATCATATAAAAAAGGTTTAACTATGCAAAATTTGTTAGATGAAATGGTGCATAAGATGTATAATCTTTCAAAAGACTAGATGAATAAAAATGTCGCTCTTAAAGAAACTAATTCCAAGAGTTGGTACACTTGCAGGAAGTCTTGTACGGAAGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTTCTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTT</genome_strand>
        <mrna_strand>ATAGAGAGAGAGAGAGAGGGAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAAGTTAACTAACT............................................................................................................................................................................................................................................................GAAGTCTTGTACGGAAGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTTCTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364772" ref_strand="+" ref_description="SGN-E364772 [cLPT-4-L11]">
      <seq>gagagagagctcttccttcaaacattcaaaccttcatccatttcatttcattaaactttttttctaacttctcttaatacgtgaactcggaaaacatatctttgttgaaatccgaatctgagaactattactctcatttttaccccataatgtttgtttcttctcttgatgaagtcagctttcaattttaattatgattgatgaatcagaaaattgaagataataaacaggcataagagaagacaaaagtttcaagttggtttcacttgttaacttaactgaagtcttgtacggaggatggctcaaaatgaaattgaagatatgttagatcacctgagaaggatcaagagtggaggtaatctggatagggtcaagattaatcgaattgagaaacttgaaatggtgttaaagtatcatcatgttcttttgcctgattccttcgtcaaactcaaaaaggacaaatggattgcgaaaatggttcagtgggtattggatggaattccggatgaatgtaaaactaaccttaatttaacaaggttagaattacatttgttggaattctttgaaggtaaaatcagtttaagttacaaccatgagttgaatgattctgatctgtcgaaatatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="49913" stop="51367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50202" g_stop="50450" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50451" i_stop="50527" i_length="77">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50528" g_stop="50560" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="280" r_length="32" r_score="0.515"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50561" i_stop="50713" i_length="153">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.281" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50714" g_stop="51067" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="631" r_length="351" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E364772" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50202" e_stop="50450"/>
          <exon e_start="50528" e_stop="50560"/>
          <exon e_start="50714" e_stop="51067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAAGTTAACTAACTGTAAGTCATCTTCTTCATGAATTACTTTTTCCTATTGATACAAAATTAATAGTGTTATTATATTAGGAAGCCAGTTTCTTTGTTGACGAAAACTGAAATCAAGAAAAAAAGTCTGAGATCATATAAAAAAGGTTTAACTATGCAAAATTTGTTAGATGAAATGGTGCATAAGATGTATAATCTTTCAAAAGACTAGATGAATAAAAATGTCGCTCTTAAAGAAACTAATTCCAAGAGTTGGTACACTTGCAGGAAGTCTTGTACGGAAGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTTCTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTTAAGAAGGTTAGAATTACATTTGTTGGAATTCTTTGAAGGTAAAATCAGTTTAAGTTACAACCATGAGTTGAATGATTCTGATCTGTCGAAATATATGGATT</genome_strand>
        <mrna_strand>GAGAGAGAGC-TCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACTTTTTTTCTAACTTCTCTTAATACGTGAACTCGGAAAACATATCTTTGTTGAAATCCGAATCTGAGAACTATTACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTAATTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAA.............................................................................GTTTCAAGTTGGTTT-CACTTGTTAACTTAACT.........................................................................................................................................................GAAGTCTTGTACGGAGGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATTAATCGAATTGAGAAACTTGAAATGGTGTTAAAGTATCATCATGTTCTTTTGCCTGATTCCTTCGTCAAACTC--AAA-AAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTTAACAAGGTTAGAATTACATTTGTTGGAATTCTTTGAAGGTAAAATCAGTTTAAGTTACAACCATGAGTTGAATGATTCTGATCTGTCGAAATATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539103" ref_strand="+" ref_description="SGN-E539103 [TUS-58-L1]">
      <seq>tcttgattatcttagtagagctggaaatgaagaaaatttttctcggtgaactaaaggcttccaagtttactcaatcaagaactttcaaggacaagaaattaccaaaaggattttctcatcatctccatagtctgttgatgtatcttagaaacaaaaagcttgagaaatttcctaataataactctcctcaaaatattgatatagcaatagagttcttgttggttttccttgatgctgatgtcggaaatcatgtaattaatggtaactggttgaatgaagttatggaaaaggttggagctatagcgggtgatgttctatatgtaattcaaaagcttcttcctagctctataaaaaaagatgacaatagcaaaataagtctttgctcaatacagatatgggagaaaactaaagatctgaaggcacaagtggagacgcactataaatccttaaaattcactccatcgcaattccccactgttggtggatggagctttctggattctcttatgcggaaactgaaagagatgtcgaaatctaaatcttgtttagatttcctgatgaaacctcttttggggaatttggagaaagagctatcagctcttacatccattttagagaaggatctgtcatctttatcatccattttaagcgatgtcgccaaggtgcaccatgaacatgaaattcttcaagatcttcacaggcgtactatcaattgggcatatgaagcggaagttgcgattgactctattcttgctcagtataatgtcttttggcatattttttgctcacttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="51167" stop="52560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51467" g_stop="52260" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E539103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51467" e_stop="52260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTTCCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATCATCTCCATAGTCTGTTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATAACTCTCCTCAAAATATTGATATAGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTATAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATAAAAAAAGATGACAATAGCAAAATAAGTCTTTGCTCAATACAGATATGGGAGAAAACTAAAGATCTGAAGGCACAAGTGGAGACGCACTATAAATCCTTAAAATTCACTCCATCGCAATTCCCCACTGTTGGTGGATGGAGCTTTCTGGATTCTCTTATGCGGAAACTGAAAGAGATGTCGAAATCTAAATCTTGTTTAGATTTCCTGATGAAACCTCTTTTGGGGAATTTGGAGAAAGAGCTATCAGCTCTTACATCCATTTTAGAGAAGGATCTGTCATCTTTATCATCCATTTTAAGCGATGTCGCCAAGGTGCACCATGAACATGAAATTCTTCAAGATCTTCACAGGCGTACTATCAATTGGGCATATGAAGCGGAAGTTGCGATTGACTCTATTCTTGCTCAGTATAATGTCTTTTGGCATATTTTTTGCTCACTTCCT</genome_strand>
        <mrna_strand>TCTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTTCCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATCATCTCCATAGTCTGTTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATAACTCTCCTCAAAATATTGATATAGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTATAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATAAAAAAAGATGACAATAGCAAAATAAGTCTTTGCTCAATACAGATATGGGAGAAAACTAAAGATCTGAAGGCACAAGTGGAGACGCACTATAAATCCTTAAAATTCACTCCATCGCAATTCCCCACTGTTGGTGGATGGAGCTTTCTGGATTCTCTTATGCGGAAACTGAAAGAGATGTCGAAATCTAAATCTTGTTTAGATTTCCTGATGAAACCTCTTTTGGGGAATTTGGAGAAAGAGCTATCAGCTCTTACATCCATTTTAGAGAAGGATCTGTCATCTTTATCATCCATTTTAAGCGATGTCGCCAAGGTGCACCATGAACATGAAATTCTTCAAGATCTTCACAGGCGTACTATCAATTGGGCATATGAAGCGGAAGTTGCGATTGACTCTATTCTTGCTCAGTATAATGTCTTTTGGCATATTTTTTGCTCACTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280953" ref_strand="+" ref_description="SGN-E280953 [cLER-7-I3]">
      <seq>cttgattatcttagtagagctggaaatgaagaaaatttttctcggtgaactaaaggcttccaagtttactcaatcaagaactttcaaggacaagaaattaccaaaaggattttctcatcatctccatagtctggtgatgtatcttagaaacaaaaagcttgagaaatttcctaataataactctcctcaaaatattgatatagcaatagaggtcttgttggttttccttgatgctgatgtcggaaatcatgtaattaatggtaactggttgaatgaagttatggaaaaggttggagctatagcgggtgatgttctatatgtaattcaaaagcttcttcctagctctattaaaaaagatgacaatagccaaataagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="51168" stop="52144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51468" g_stop="51844" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E280953" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51468" e_stop="51844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTTCCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATCATCTCCATAGTCTGTTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATAACTCTCCTCAAAATATTGATATAGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTATAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATAAAAAAAGATGACAATAGCAAAATAAGTC</genome_strand>
        <mrna_strand>CTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTTCCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATCATCTCCATAGTCTGGTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATAACTCTCCTCAAAATATTGATATAGCAATAGAGGTCTTGTTGGTTTTCCTTGATGCTGATGTCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTATAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATTAAAAAAGATGACAATAGCCAAATAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300728" ref_strand="+" ref_description="SGN-E300728 [cLEW-8-H19]">
      <seq>gacatattaatccagtgactgatgaggatatagtgggttttgggaatgacatagaaaaaatgtttcagtatctgattagaggtacaaatgatctagacgttgtcccaattgtaggcatgggtggacaagggaaaacgacagttgctagaaaggtgtacaatagtgacaacattgtttctcattttgatgttcgagcatggtgcatcgtttcccaaacatataaccggagaaagctattacaagacattttgagtcaagttaccggttccaaggacaaggggtatgaggatgatatccttgctgatgagttgaggaaaagcttaatgggcaagagatatctcattgtcttggatgatatgtgggattgtatggcatgggatgacttaaggctttcctttccagattccggaaatagaagcagaatagtagtaacaactcgacttgagaaagtgggcgaacaagtcaagtgccatactgatccttattctcttccgttcctcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="52073" stop="53177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52373" g_stop="52877" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E300728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52373" e_stop="52877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATATCAATCCAGTGACTGATGAGGATATAGTGGGTTTTGGGAATGACATAGAAAAAATGTTTCAGTATCTGATTAGAGGTACAAATGATCTAGACGTTGTCCCAATTGTAGGCATGGGTGGACAAGGGAAAACGACAGTTGCTAGAAAGGTGTACAATAGTGACAACATTGTTTCTCATTTTGATGTTCGAGCATGGTGCATCGTTTCCCAAACATATAACCGGAGAAAGCTATTACAAGACATTTTGAGTCAAGTTACCGGTTCCAAGGACAAGGGGTATGAGGATGATATCCTTGCTGATGAGTTGAGGAAAAGCTTAATGGGCAAGAGATATCTCATTGTCTTGGATGATATGTGGGATTGTATGGCATGGGATGACTTAAGGCTTTCCTTTCCAGATTCCGGAAATAGAAGCAGAATAGTAGTAACAACTCGACTTGAGAAAGTGGGCGAACAAGTCAAGTGCCATACTGATCCTTATTCTCTTCCGTTCCTCACAAA</genome_strand>
        <mrna_strand>GACATATTAATCCAGTGACTGATGAGGATATAGTGGGTTTTGGGAATGACATAGAAAAAATGTTTCAGTATCTGATTAGAGGTACAAATGATCTAGACGTTGTCCCAATTGTAGGCATGGGTGGACAAGGGAAAACGACAGTTGCTAGAAAGGTGTACAATAGTGACAACATTGTTTCTCATTTTGATGTTCGAGCATGGTGCATCGTTTCCCAAACATATAACCGGAGAAAGCTATTACAAGACATTTTGAGTCAAGTTACCGGTTCCAAGGACAAGGGGTATGAGGATGATATCCTTGCTGATGAGTTGAGGAAAAGCTTAATGGGCAAGAGATATCTCATTGTCTTGGATGATATGTGGGATTGTATGGCATGGGATGACTTAAGGCTTTCCTTTCCAGATTCCGGAAATAGAAGCAGAATAGTAGTAACAACTCGACTTGAGAAAGTGGGCGAACAAGTCAAGTGCCATACTGATCCTTATTCTCTTCCGTTCCTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371690" ref_strand="+" ref_description="SGN-E371690 [TUS-29-M20]">
      <seq>aaaagaagagagttgtgaattgttgcagaaaaaagtgtttcaaaaggaagatttcccgcctgaactacaagatgtgagtcgagcagttgcagaaaaatgcaaaggactgcccctagtggttgtcttggtagctggaataatcaaaaaaaggaaaatggaagaatcttggtggaatgaggtgaaagattctttatttgaccaccttaatcgtgagtcggaagaatatagtctttcaactatgcagttgagttactataacttaaccgactgtttaaagccttgtcttctttatatggggatgtttcaggaggatgcaataattcgagtatctgaattgataagtctatggattgcggaaggatttgtgcagagcattgaatctgggagattgttgatggaagaggcagctgaaggttacttgatggatctcattcagagtaacgtggtaatggtttcaaatagaaggtataatggtaaggtcaaatactgtcaggttcatgacgtagtgcttcacttttgcttggagaagagtctagaagaaaagtttatgttggcagtgaaggggcatgatagccagtttcaaccttttgaatggaaggaaaaccgagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="52575" stop="53785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52875" g_stop="53485" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E371690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52875" e_stop="53485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAAATAGAAGGTATAATGGTAAGGTCAAATACTGTCAGGTTCATGACGTAGTGCTTCACTTTTGCTTGGAGAAGAGTCTAGAAGAAAAGTTTATGTTGGCAGTGAAGGGGCATGATAGCCAGTTTCAACCTTTTGAATGGAAGGAAAACCGAGTGA</genome_strand>
        <mrna_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAAATAGAAGGTATAATGGTAAGGTCAAATACTGTCAGGTTCATGACGTAGTGCTTCACTTTTGCTTGGAGAAGAGTCTAGAAGAAAAGTTTATGTTGGCAGTGAAGGGGCATGATAGCCAGTTTCAACCTTTTGAATGGAAGGAAAACCGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280658" ref_strand="+" ref_description="SGN-E280658 [cLER-1-P16]">
      <seq>aaaagaagagagttgtgaattgttgcagaaaaaagtgtttcaaaaggaagatttcccgcctgaactacaagatgtgagtcgagcagttgcagaaaaatgcaaaggactgcccctagtggttgtcttggtagctggaataatcaaaaaaaggaaaatggaagaatcttggtggaatgaggtgaaagattctttatttgaccaccttaatcgtgagtcggaagaatatagtctttcaactatgcagttgagttactataacttaaccgactgtttaaagccttgtcttctttatatggggatgtttcaggaggatgcaataattcgagtatctgaattgataagtctatggattgcggaaggatttgtgcagagcattgaatctgggagattgttgatggaagaggcagctgaaggttacttgatggatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="52575" stop="53606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52875" g_stop="53306" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E280658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52875" e_stop="53306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCAT</genome_strand>
        <mrna_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370462" ref_strand="+" ref_description="SGN-E370462 [TUS-29-M19]">
      <seq>aaaagaagagagttgtgaattgttgcagaaaaaagtgtttcaaaaggaagatttcccgcctgaactacaagatgtgagtcgagcagttgcagaaaaatgcaaaggactgcccctagtggttgtcttggtagctggaataatcaaaaaaaggaaaatggaagaatcttggtggaatgaggtgaaagattctttatttgaccaccttaatcgtgagtcggaagaatatagtcttttaactatgcagttgagttactataacttaaccgactgtttaaagccttgtcttctttatatggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="52575" stop="53475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52875" g_stop="53175" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E370462" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52875" e_stop="53175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATG</genome_strand>
        <mrna_strand>AAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTTAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241579" ref_strand="+" ref_description="SGN-E241579 [cLED-36-E1]">
      <seq>aaaaggaagatttcccgcctgaactacaagatgtgagtcgagcacttgcagaaaaatgcacaggactgcccctagtggttgacttggaagctggaataatcaaaaaaaggaaaatggcagaatcttggtggaatgaggtgaaagatatctttatttgaccaccttaatcgtgagtcggaagaatataggctttcaactatgcaggtgagttactataacttaaccgactgtttaaagccttgtcttctttatatggggatgtttcaggaggatgcaataattcgagtatctgaattgataagtctatggattgctgaaagaattgtgcagagcattgaatctgggagattgatgatggaagaggcagatgaaggttacttgatggatctcattcagagtaacgtggtaatggtttcaaatataaggtataatggtaaggtcaaatactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="52616" stop="53665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52916" g_stop="53365" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E241579" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52916" e_stop="53365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGAT-TCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAAATAGAAGGTATAATGGTAAGGTCAAATACTGTC</genome_strand>
        <mrna_strand>AAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCACTTGCAGAAAAATGCACAGGACTGCCCCTAGTGGTTGACTTGGAAGCTGGAATAATCAAAAAAAGGAAAATGGCAGAATCTTGGTGGAATGAGGTGAAAGATATCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGGCTTTCAACTATGCAGGTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCTGAAAGAATTGTGCAGAGCATTGAATCTGGGAGATTGATGATGGAAGAGGCAGATGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAAATATAAGGTATAATGGTAAGGTCAAATACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247913" ref_strand="+" ref_description="SGN-E247913 [cLEF-47-L13]">
      <seq>cagcgtctttttgggagatggaaaaattaaggcatgttaagatttgggatgctaaatttgatttggaagaggataatcagggatcctccgaattggaaaatttgaggatattacagtatgtaaaatttccaattgatggaagggatagggtggatatgttatcaaggaggtgtccaaatcttcaaaaactgcacatcaacttggaatatcggggcagtaataattcggcagatttattttgtctcacattagagaatcttactcagcttcaaaatcttcgcctaactgttgagaggtccaacattgtatctgggttacaattgccttcaaatttaaacaagttggtactaagtggggctcatatcgaaaacctgagttccttcattgcaggactaccaagcctggagtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcanaggaatcgtttccccagctcgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53519" stop="54679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53819" g_stop="54379" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E247913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53819" e_stop="54379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTAAATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTACAGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACAC</genome_strand>
        <mrna_strand>CAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTAAATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTACAGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCANAGGAATCGTTTCCCCAGCTCGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368738" ref_strand="+" ref_description="SGN-E368738 [TUS-22-J16]">
      <seq>tgtccaaatcttcaaaaactgcacatcaacttggaatatcggggcagtaataattcggcagatttattttgtctcacattagagaatcttactcagcttcaaaatcttcgcctaactgttgagaggtccaacattgtatctgggttacaattgccttcaaatttaaacaagttggtactaagtggggctcatatcgaaaacctgagttccttcattgcaggactaccaagcctggagtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatcaaaatcacagacagagtggccggggaataacaaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53689" stop="55103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53989" g_stop="54558" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="54669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="603" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54765" g_stop="54803" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="642" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E368738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53989" e_stop="54558"/>
          <exon e_start="54637" e_stop="54669"/>
          <exon e_start="54765" e_stop="54803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAA</genome_strand>
        <mrna_strand>TGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACAT...............................................................................................CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237622" ref_strand="+" ref_description="SGN-E237622 [cLED-19-I1]">
      <seq>tgtccaaatcttcaaaaactgcacatcaacttggaatatcggggcagtaataattcggcagatttattttgtctcacattagagaatcttactcagcttcaaaatcttcgcctaactgttgagaggtccaacattgtatctgggttacaattgccttcaaatttaaacaagttggtactaagtggggctcatatcgaaaacctgagttccttcattgcaggactaccaagcctggagtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53689" stop="54801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53989" g_stop="54501" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E237622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53989" e_stop="54501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAG</genome_strand>
        <mrna_strand>TGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548165" ref_strand="+" ref_description="SGN-E548165 [TUS-58-L1](-)">
      <seq>attagagaatcttactcagcttcaaaatcttcgcctaactgttgagaggtccaacattgtatctgggttacaattgccttcaaatttaaacaagttggtactaagtggggctcatatcgaaaacctgagttccttcattgcaggactaccaagcctggagtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatcaaaatcacagacagagtggccggggaataacaaggcaagaagctctctctcaagttcacaaattttcgcagcattaaaaactcaaaggttttgatagtgtcttagatataagctcattgacatgatacttttgctgtgcactcaaaattttgaagtttgttattgttgaattattgtaatttgtggcacctattgaaaaattttaatcacaaacatttcttttttaataaaagtaacatgaatgatggtttgctcattcatcaaagtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53766" stop="55335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54066" g_stop="54558" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="54669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="526" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54765" g_stop="55036" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="798" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="808"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E548165" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54066" e_stop="54558"/>
          <exon e_start="54637" e_stop="54669"/>
          <exon e_start="54765" e_stop="55036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGTGTAT</genome_strand>
        <mrna_strand>ATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACAT...............................................................................................CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288588" ref_strand="+" ref_description="SGN-E288588 [cLES-8-B14]">
      <seq>ttcgcctaactgttgagaggtccaacattgtatctgggttacaattgccttcaaatttaaacaagttggtactaagtggggctcatatcgaaaacctgagttccttcattgcaggactaccaagcctggagtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatcaaaatcacagacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53795" stop="55081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54095" g_stop="54558" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="54669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="497" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54765" g_stop="54781" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="514" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E288588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54095" e_stop="54558"/>
          <exon e_start="54637" e_stop="54669"/>
          <exon e_start="54765" e_stop="54781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAG</genome_strand>
        <mrna_strand>TTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACAT...............................................................................................CAAAATCACAGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251865" ref_strand="-" ref_description="SGN-E251865 [cLEG-14-F12]">
      <seq>agtatctccaattttgtgacccctatgaatctgttcaaatcagagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatcaaaatcacagacagagtggccggggaataacaaggcaagaagctctctctcaagttcacaaattttcgcagcattaaaaactcaaaggttttgatagtgtcttagatataagctcattgacatgatacttttgctgtgcactcaaaattttgaagtttgttattgttgaattattgtaatttgtcccacctattgccaaattttaatcacaaacatttcttttttaataaaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53924" stop="91804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54224" g_stop="54558" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="54669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="368" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54765" g_stop="55002" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="606" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55003" i_stop="55145" i_length="143">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55146" g_stop="55160" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="621" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E251865" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54224" e_stop="54558"/>
          <exon e_start="54637" e_stop="54669"/>
          <exon e_start="54765" e_stop="55002"/>
          <exon e_start="55146" e_stop="55160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGTGTATGTACGGCATGATTTCATATCGCCTATCCAAATGAATTTGTAAACTTTTATTTGTAAAATCAATTTTCCCTTCTTCCCCATGTATGGCATGAACTCTCTACTGGTATAAGTAACAAAATATAAAA</genome_strand>
        <mrna_strand>AGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACAT...............................................................................................CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTCCCACCTATTGCCAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAAA...............................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371689" ref_strand="+" ref_description="SGN-E371689 [TUS-29-M20](-)">
      <seq>gacccctatgaatctgttcaaatcaaagattggtgccttggaggtatcacgttccctaaacttaagttgttgaaactggtgaacttaccgatctcaaggtgggatgcctcagaggaatcgtttccccagctcgaaacacttgttataaaaaggtgtaaccacctcaaggagatcccccttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatgtacgtgcctgtaatcacaacaatgctatatattccttcttctaatttgacgcttgcttttgcttaattgctccatgttgatttcaaaattgcagcaaaatcacagacagagtggccggggaataacaaggcaagaagctctctctcaagttcacaaattttcgcagcattaaaaactcaaaggttttgatagtgtcttagatataagctcattgacatgatacttttgctgtgcactcaaaattttgaagtttgttattgttgaattattgtaatttgtggcacctattgaaaaattttaatcacaaacatttcttttttaataaaagtaacatgaatgatggattgctcattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="53941" stop="55330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54241" g_stop="54558" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="55032" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="714" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E371689" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54241" e_stop="54558"/>
          <exon e_start="54637" e_stop="55032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGT</genome_strand>
        <mrna_strand>GACCCCTATGAATCTGTTCAAATCAAAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGATTGCTCATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300415" ref_strand="+" ref_description="SGN-E300415 [cLET-45-A18]">
      <seq>tacggagatccctcttagctttgctgatattccaacactgaagcagattaagttgattaggtgcgagaacgaatctctcaaggattcagctgtggagattaagaaagacgttgaagagaatgaaggaaacgaccgtattgacctcattatcaaaggatggtagggaatataattcgagatgaaacatcaaaatcacagacagagtggccggggaataacaaggcaagaagctctctctcaagttcacaaattttcgcagcattaaaaactcaaaggttttgatagtgtcttagatataagctcattgacatgatacttttgctgtgcactcaagattttgaagtttgttattgttgaattattgtaatttgtggcacctattgaaaaattttaatcacaaacatttcttttttaataaaagtaacatgaatgatggtttgctcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="54106" stop="55330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54405" g_stop="54558" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54637" g_stop="54669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="187" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54765" g_stop="55032" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="455" r_length="268" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E300415" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54405" e_stop="54558"/>
          <exon e_start="54637" e_stop="54669"/>
          <exon e_start="54765" e_stop="55032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAAGTAAGTAGAAACAAACTCCTAAATATGTTCTGTTTTTTTGAGTATCTAACTAACTTGACACCACTATGTATAATACAGGGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGT</genome_strand>
        <mrna_strand>TACGGAGATCCCTCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA..............................................................................GGATGGTAGGGAATATAATTCGAGATGAAACAT...............................................................................................CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAGATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370461" ref_strand="+" ref_description="SGN-E370461 [TUS-29-M19](-)">
      <seq>tgcctgtaataacaacaatgctatatattcattcttataatttgacgcatgcttttgcttaattgctccatgttgatttaaaaattgcagcaaaatcacagacagagtggccggggaataacaaggcaagaagctctctctcaagttcacaaattttcgcagcattaaaaactcaaaggttttgatagtgtcttagatataagctcattgacatgatacttttgctgtgcactcaaaattttgaagtttgttattgttgaattattgtaatttgtggcacctattgaaaaattttaatcacaaacatttcttttttaataaaagtaacatgaatgatggtttgctcattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="54375" stop="55330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54675" g_stop="55032" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E370461" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54675" e_stop="55032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGT</genome_strand>
        <mrna_strand>TGCCTGTAATAACAACAATGCTATATATTCATTCTTATAATTTGACGCATGCTTTTGCTTAATTGCTCCATGTTGATTTAAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258561" ref_strand="+" ref_description="SGN-E258561 [cLEG-47-L17]">
      <seq>aaacgtggcaaccatagcgggtgatgttctatacgtaattcaaaagcttcttcctagatcaataagcaaagacgatgacactagcaagataaacatttactcgatgcaggtattgggagaaaactaaagatctngaaggcacaagtangagacgtactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="58505" stop="59261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58805" g_stop="58961" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E258561" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58805" e_stop="58961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGGCAACCATAGCGGGTGATGTTCTATACGTAATTCAAAAGCTTCTTCCTAGATCAATAAGCAAAGACGATGACACTAGCAAGATAAACATTTACTCGATGCAGGTATT-GGAGAAAACTAAAGATCT-GAAGGCACAAGTA-GAGACGTACTAC</genome_strand>
        <mrna_strand>AAACGTGGCAACCATAGCGGGTGATGTTCTATACGTAATTCAAAAGCTTCTTCCTAGATCAATAAGCAAAGACGATGACACTAGCAAGATAAACATTTACTCGATGCAGGTATTGGGAGAAAACTAAAGATCTNGAAGGCACAAGTANGAGACGTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245684" ref_strand="+" ref_description="SGN-E245684 [cLEF-48-I15]">
      <seq>attaacgtgtctgcattgttaagtttatggttagcggaagacttcgttcagaacattaaatctgctgaagattacttgatgaatctcattagcagtaacgtggtaatggtttcaaagaaagaatataatggcaagatcaaatactgtgaggttcatgatgtagtgcttcacttttgcttggagaagagtagagaagaaaattttatgttggttgcgaagggaaatcatagtcaatttcaatcttttgtttggaagcaaagtcgagtgagcttcaatttgattgaagagaattccaagtttgcatccaaaacaaggaagtgttcccatcaaccgttgaggtcactgataacgaacggagcatctttttatataatgtccttaagttcttggattcataatttgcgacttcttaaggtcttggttttgagttcctatgaagttgactatgtgaattcagctacactgaaaccacttaattacctgaagtacctcggagtaagggcaactacgttctattttgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="59940" stop="61063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60240" g_stop="60763" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E245684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60240" e_stop="60763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACGTGTCTGCATTGTTAAGTTTATGGTTAGCGGAAGACTTCGTTCAGAACATTAAATCTGCTGAAGATTACTTGATGAATCTCATTAGCAGTAACGTGGTAATGGTTTCAAAGAAAGAATATAATGGCAAGATCAAATACTGTGAGGTTCATGATGTAGTGCTTCACTTTTGCTTGGAGAAGAGTAGAGAAGAAAATTTTATGTTGGTTGCGAAGGGAAATCATAGTCAATTTCAATCTTTTGTTTGGAAGCAAAGTCGAGTGAGCTTCAATTTGATTGAAGAGAATTCCAAGTTTGCATCCAAAACAAGGAAGTGTTCCCATCAACCGTTGAGGTCACTGATAACGAACGGAGCATCTTTTTATATAATGTCCTTAAGTTCTTGGATTCATAATTTGCGACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTTGACTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGGGCAACTACGTTCTATTTTGATCG</genome_strand>
        <mrna_strand>ATTAACGTGTCTGCATTGTTAAGTTTATGGTTAGCGGAAGACTTCGTTCAGAACATTAAATCTGCTGAAGATTACTTGATGAATCTCATTAGCAGTAACGTGGTAATGGTTTCAAAGAAAGAATATAATGGCAAGATCAAATACTGTGAGGTTCATGATGTAGTGCTTCACTTTTGCTTGGAGAAGAGTAGAGAAGAAAATTTTATGTTGGTTGCGAAGGGAAATCATAGTCAATTTCAATCTTTTGTTTGGAAGCAAAGTCGAGTGAGCTTCAATTTGATTGAAGAGAATTCCAAGTTTGCATCCAAAACAAGGAAGTGTTCCCATCAACCGTTGAGGTCACTGATAACGAACGGAGCATCTTTTTATATAATGTCCTTAAGTTCTTGGATTCATAATTTGCGACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTTGACTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGGGCAACTACGTTCTATTTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302221" ref_strand="+" ref_description="SGN-E302221 [cLEW-19-C8]">
      <seq>gacttcttaaggtcttggttttgagttcctatgaagttgagtatgtgaattcagctacactgaaaccacttaattacctgaagtacctcggagtaagggcaactacgttctattttgatcgagaatcacatctgccccatcttgaaactttaattgtgaagaatgatagatcagttatgttacgagggtgtttttgggaaatggaacaattaaggcatgttgagatcaatgatgctgaatttgataagcaggggctctttgaaggatcctctaaattggaaaatttgaggatattaaagaacattgttggatttccaattgatagggcggatgtgttatcaaggaggtgtcctaatcttcaacaacttcaaatcgaatttggatcttttgcagaacctctttggctcacattggagaatcttacccagcttcaaatacttgacctttcctttaggttgttccacatgctatctgggttacaattgccttcaaatttaaagatgttggtactaagagacgctgatctagaaaacctaacttccttctttgctggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="60343" stop="61499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60643" g_stop="61199" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E302221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60643" e_stop="61199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTTGACTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGGGCAACTACGTTCTATTTTGATCGAGAATCACATCTGCCCCATCTTGAAACTTTAATTGTGAAGAATGATAGATCAGTTATGTTACGAGGGTGTTTTTGGGAAATGGAACAATTAAGGCATGTTGAGATCAATGATGCTGAATTTGATAAGCAGGGGCTCTTTGAAGGATCCTCTAAATTGGAAAATTTGAGGATATTAAAGAACATTGTTGGATTTCCAATTGATAGGGCGGATGTGTTATCAAGGAGGTGTCCTAATCTTCAACAACTTCAAATCGAATTTGGATCTTTTGCAGAACCTCTTTGGCTCACATTGGAGAATCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTGTTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGACGCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTA</genome_strand>
        <mrna_strand>GACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTTGAGTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGGGCAACTACGTTCTATTTTGATCGAGAATCACATCTGCCCCATCTTGAAACTTTAATTGTGAAGAATGATAGATCAGTTATGTTACGAGGGTGTTTTTGGGAAATGGAACAATTAAGGCATGTTGAGATCAATGATGCTGAATTTGATAAGCAGGGGCTCTTTGAAGGATCCTCTAAATTGGAAAATTTGAGGATATTAAAGAACATTGTTGGATTTCCAATTGATAGGGCGGATGTGTTATCAAGGAGGTGTCCTAATCTTCAACAACTTCAAATCGAATTTGGATCTTTTGCAGAACCTCTTTGGCTCACATTGGAGAATCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTGTTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGACGCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203944" ref_strand="+" ref_description="SGN-E203944 [cLEC-22-I9]">
      <seq>tcttacccagcttcaaatacttgacctttcctttaggttgttccacatgctatctgggttacaattgccttcaaatttaaagatgttggtactaagagacgctgatctagaaaacctaacttccttctttgctggactaccaagcctggagtatcttcaattaacaaatatgtattttcctcaatcagaatggtgccttggagatatcacgtttcataaactcaagttgttgaaactggtgcagttagatatctcaaggtgggatgtctcggaggaatcctttcccctgcttgaaacaatcgttataagatggtgccataacctcgaggaaatccccattagctttgcagatgttccaacactgaaacagattaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="60761" stop="61737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61061" g_stop="61437" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E203944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61061" e_stop="61437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTGTTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGACGCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTACCAAGCCTGGAGTATCTTCAATTAACAAATATGTATTTTCCTCAATCAGAATGGTGCCTTGGAGATATCACGTTTCATAAACTCAAGTTGTTGAAACTGGTGCAGTTAGATATCTCAAGGTGGGATGTCTCGGAGGAATCCTTTCCCCTGCTTGAAACAATCGTTATAAGATGGTGCCATAACCTCGAGGAAATCCCCATTAGCTTTGCAGATGTTCCAACACTGAAACAGATTAAGT</genome_strand>
        <mrna_strand>TCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTGTTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGACGCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTACCAAGCCTGGAGTATCTTCAATTAACAAATATGTATTTTCCTCAATCAGAATGGTGCCTTGGAGATATCACGTTTCATAAACTCAAGTTGTTGAAACTGGTGCAGTTAGATATCTCAAGGTGGGATGTCTCGGAGGAATCCTTTCCCCTGCTTGAAACAATCGTTATAAGATGGTGCCATAACCTCGAGGAAATCCCCATTAGCTTTGCAGATGTTCCAACACTGAAACAGATTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374785" ref_strand="+" ref_description="SGN-E374785 [TUS-14-H4](-)">
      <seq>gcattccggtcacaggttcttgtggtctttaagaaaatctccaccaaagggaaaagtagatataccaacaagttacagcgactatgaagaagttttgccaaaaggattcttggagagaacaaaagaaagaggaaaaataataggatgggcaccacaagtaacaattttatctcatccatcaataggaggatttgtgtcccattgtggatggaattcaatactagaaagtgtacattttggtgtaccaattgcaacttggccactctatgctgaacaacaaatgaatgcatttttattagtgaaagaattaggacttggtgaagagataagattggactatgctgttgattttgaagggaaaaataatcaagttgatacagtaagtgctcaagaaattgaaagtggtttattaaagttgatggtaaaaagtgaagaaaatgaagtgaggaaaaaaatgaaggagaagagtagagtagctatggaggaaggtggatcatcttataactcacttggacttctaattaaggatgtaatcacaaatatttaattttcttatagtatatgaagaagcaaaacaagagaagatatatggtatttgaggagatatgtagtattatgatttatggtcatttttaatatttgtacactttcaatatttattcaatgcgttcacttcaaaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="68764" stop="66080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68464" g_stop="68450" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68449" i_stop="67049" i_length="1401">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67048" g_stop="66371" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="693" r_length="678" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E374785" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68464" e_stop="68450"/>
          <exon e_start="67048" e_stop="66371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCCGGTCACAGGTATTATTAGTTGTAATTTTTTTTTTTACTCTCCAGTTTCATCAAGTTGCTTGTCTGGTTTACATGTAGCACAGAGTTTTTTTTATTAAAAATAGAAAAGACTTTTCAATTTTGTGGTATTTCTTAAACGATAAATAGGTAGAATATAACAAAATATCTTTTAATTTTACAGTTTTAAACATGTCACGTGAAAATTTGAAGTTAAAGAGTTGTTAAAAAAAAGAAGGGAAAATGCACAAGCACCCCTCAACCCGTTTTCGCATGGGCTCATCATCTGATGCAGAACCGATGCGAGAGGGAGAAGCGGGGATTGATAGCTTTCAAGAACCAGTGGAAAGGAAAGACTTCTTTCCCGAAATCTCAGAGACACACTTATACTATATTAAAGTCTTATTACCCCTGAACTTATTTTATAAGTAATTTTCTATCCATTTTCAGCCTACGTGGTTTCAACTTGAAAAAAAAAAGTCAATCAGCCTTTGGCCCAGAAGATAGTGCCATGAAAGTCGAAAAGGGATAGAAAATTATTAATAAAATAAGTTCAGGGGGAAATAGTACCTTAGTATAGTATAAGTGTGCCTCTGAGATTTCGAACATAGTTTGAGGGAGTACTTGTGCATTATCCCTTACAGAATAAAAGAATAAATAAGGCAAACAAATTTAAACGGAGAAAGTAACATAGTGTGCATACATATAATATATGGATGTACTACATATGATAAAGGTTTATTTATAATTAACTAGAGATGTTATGTTCTAGCCTTAGAGAACGAACTCTCATAATTTACAACATATAATACATATATTGGATCCTAAACTTGGCTCCAAATTTTAACTTTGACTTTCAACTTTCATAATGCACAAACAAACACTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTAAATGGCACAATACAAGTAGGATACCACGTAGGACAAAAAATGACATGTAGGACGACATGTAGGACATACGTGTCTATTTGTTCAACTTTATACAAGTTTAAGTGTTTATTTGTGCACATCTAAAGTTGAAGAACATAAATGTAATTTGAAATCAAGTTAAAGGGCATATTTATGTATTATGCCTTTACGATAATAAGGATTCATATCTCACACCAACTAACTTTGTTGATTGGGATTAAGGGTATAAGTTTTTCTTTTTTTTCATATGTATAGTGGCTTGTTTATATATCTCAAAGGAAAGTTTTTTTCACCTACACTCTCCAAATTAATATTATGTCGTGCGCGTATGTGTTGGATTCTCTAAAACTACTTTATTTTTGGAAAATCCAATACGTACATATCGTCATTTTAAAAAAATCTGAGCAACATAGATTTTTATACCTCGAAAACCTATTCCTAATTTTGTTTTATTGTTATTTTTAAATAGGTTCTTGTGGTCTTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGAAGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATGGGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGGATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTATGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGATAAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGCTCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAGGAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGAGGAAGGTGGATCATCTTATAACTCACTTGGACTTCTAATTAAGGATGTAATCACAAATATTTAATTTTCTTATAGTATATGAAGAAGCAAAACAAGAGAAGATATATGGTATTTGAGGAGATATGTAGTATTATGATTTATGGTCATTTTTAATATTTGTACACTTTCAATATTTATTCAATGCGTTCACTTCAAAAATAATTTTCATAC</genome_strand>
        <mrna_strand>GCATTCCGGTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTGGTCTTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGAAGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATGGGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGGATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTATGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGATAAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGCTCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAGGAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGAGGAAGGTGGATCATCTTATAACTCACTTGGACTTCTAATTAAGGATGTAATCACAAATATTTAATTTTCTTATAGTATATGAAGAAGCAAAACAAGAGAAGATATATGGTATTTGAGGAGATATGTAGTATTATGATTTATGGTCATTTTTAATATTTGTACACTTTCAATATTTATTCAATGCGTTCACTTCAAAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213674" ref_strand="+" ref_description="SGN-E213674 [cLEC-76-D23]">
      <seq>aaaaagtggtcattttataaataattcattggagattgaaagtactattaagtggttagatgatcaacaggattcctctgtagtgtttttgtgttttggtagtatgggaagttttgaagcagaacaggtcaaagaaatagcaactgcactggagcattccggtcacaggttcttgtggtctttaagaaaatctccaccaaagggaaaagtagatataccaacaagttacagcgactatgaagaagttttgccaaaaggattcttggagagaacaaaagaaagaggaaaaataataggatgggcaccacaagtaacaattttatctcatccatcaataggaggatttgtgtcccattgtggatggaattcaatactagaaagtgtacattttggtgtaccaattgcaacttggccactctatgctgaacaacaaatgaatgcatttttattagtgaaagaattaggacttggtgaagagataagattggactatgctgttgattttgaagggaaaaataatcaagttgatacagtaagtgctcaagaaattgaaagtggtttattaaagttgatggtaaaaagtgaagaaaatgaagtgaggaaaaaaatgaaggagaagagtagagtagctatggagggaaggtggatcatcttataactcacttggacttctaatttaggatgtaatcacnaatatttaattttcttatagtatatgaagaagcaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="68917" stop="66187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68617" g_stop="68450" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68449" i_stop="67049" i_length="1401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67048" g_stop="66486" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="732" r_length="564" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E213674" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68617" e_stop="68450"/>
          <exon e_start="67048" e_stop="66486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGGTCATTTTATAAATAATTCATTGGAGATTGAAAGTACTATTAAGTGGTTAGATGATCAACAGGATTCCTCTGTAGTGTTTTTGTGTTTTGGTAGTATGGGAAGTTTTGAAGCAGAACAGGTCAAAGAAATAGCAACTGCACTGGAGCATTCCGGTCACAGGTATTATTAGTTGTAATTTTTTTTTTTACTCTCCAGTTTCATCAAGTTGCTTGTCTGGTTTACATGTAGCACAGAGTTTTTTTTATTAAAAATAGAAAAGACTTTTCAATTTTGTGGTATTTCTTAAACGATAAATAGGTAGAATATAACAAAATATCTTTTAATTTTACAGTTTTAAACATGTCACGTGAAAATTTGAAGTTAAAGAGTTGTTAAAAAAAAGAAGGGAAAATGCACAAGCACCCCTCAACCCGTTTTCGCATGGGCTCATCATCTGATGCAGAACCGATGCGAGAGGGAGAAGCGGGGATTGATAGCTTTCAAGAACCAGTGGAAAGGAAAGACTTCTTTCCCGAAATCTCAGAGACACACTTATACTATATTAAAGTCTTATTACCCCTGAACTTATTTTATAAGTAATTTTCTATCCATTTTCAGCCTACGTGGTTTCAACTTGAAAAAAAAAAGTCAATCAGCCTTTGGCCCAGAAGATAGTGCCATGAAAGTCGAAAAGGGATAGAAAATTATTAATAAAATAAGTTCAGGGGGAAATAGTACCTTAGTATAGTATAAGTGTGCCTCTGAGATTTCGAACATAGTTTGAGGGAGTACTTGTGCATTATCCCTTACAGAATAAAAGAATAAATAAGGCAAACAAATTTAAACGGAGAAAGTAACATAGTGTGCATACATATAATATATGGATGTACTACATATGATAAAGGTTTATTTATAATTAACTAGAGATGTTATGTTCTAGCCTTAGAGAACGAACTCTCATAATTTACAACATATAATACATATATTGGATCCTAAACTTGGCTCCAAATTTTAACTTTGACTTTCAACTTTCATAATGCACAAACAAACACTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTAAATGGCACAATACAAGTAGGATACCACGTAGGACAAAAAATGACATGTAGGACGACATGTAGGACATACGTGTCTATTTGTTCAACTTTATACAAGTTTAAGTGTTTATTTGTGCACATCTAAAGTTGAAGAACATAAATGTAATTTGAAATCAAGTTAAAGGGCATATTTATGTATTATGCCTTTACGATAATAAGGATTCATATCTCACACCAACTAACTTTGTTGATTGGGATTAAGGGTATAAGTTTTTCTTTTTTTTCATATGTATAGTGGCTTGTTTATATATCTCAAAGGAAAGTTTTTTTCACCTACACTCTCCAAATTAATATTATGTCGTGCGCGTATGTGTTGGATTCTCTAAAACTACTTTATTTTTGGAAAATCCAATACGTACATATCGTCATTTTAAAAAAATCTGAGCAACATAGATTTTTATACCTCGAAAACCTATTCCTAATTTTGTTTTATTGTTATTTTTAAATAGGTTCTTGTGGTCTTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGAAGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATGGGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGGATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTATGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGATAAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGCTCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAGGAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGA-GGAAGGTGGATCATCTTATAACTCACTTGGACTTCTAATTAAGGATGTAATCACAAATATTTAATTTTCTTATAGTATATGAAGAAGCAAAACAA</genome_strand>
        <mrna_strand>AAAAAGTGGTCATTTTATAAATAATTCATTGGAGATTGAAAGTACTATTAAGTGGTTAGATGATCAACAGGATTCCTCTGTAGTGTTTTTGTGTTTTGGTAGTATGGGAAGTTTTGAAGCAGAACAGGTCAAAGAAATAGCAACTGCACTGGAGCATTCCGGTCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTGGTCTTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGAAGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATGGGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGGATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTATGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGATAAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGCTCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAGGAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGAGGGAAGGTGGATCATCTTATAACTCACTTGGACTTCTAATTTAGGATGTAATCACNAATATTTAATTTTCTTATAGTATATGAAGAAGCAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374786" ref_strand="+" ref_description="SGN-E374786 [TUS-14-H4]">
      <seq>tgtcaacatgaaagaattaattttcattcctttagcaggattagggcacattgtatcagctattgaatttgcaaaacaaattctaaataaagatgaaaatttttccatctcttttctcatcatggaacttcctttagactatggtgtgaaaaatttcattcaatcactcacttctcaacctcgtttaaaattcatcgatatcaccctagacgaaaaaacatcatctcaattcctcaataaccatgaaacattcctctatgatttcatcgatggtcacaaaccacgcgtacgtgaatatgttcacaacatttgtaaaacaagtccatgttatggttttgttcttgacatgttttgtacatcgatgattgatatagctaacgaattcaatgtccctagttacatttacttcgcgtcaaacgcttcttttcttggcttatgtcttcattttgagactttaagaaatgaacaacattcagatacgtccagatacatgaactctaacgaggcattatcaatcccatgttttaaaaatctttgtcctactaaagttttgcctaagcatttgttagattcaagacttgcttcaacattgttttttgatggaattcgtcgatttaaagagactaaggggattattgttaatacttttttcgagcttgaatcgttttctcttcaggctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="69655" stop="68372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69355" g_stop="68672" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E374786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69355" e_stop="68672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAAATCTTTGTCCTACTAAAGTTTTGCCTAAGCATTTGTTAGATTCAAGACTTGCTTCAACATTGTTTTTTGATGGAATTCGTCGATTTAAAGAGACTAAGGGGATTATTGTTAATACTTTTTTCGAGCTTGAATCGTTTTCTCTTCAGGCTCTTTT</genome_strand>
        <mrna_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAAATCTTTGTCCTACTAAAGTTTTGCCTAAGCATTTGTTAGATTCAAGACTTGCTTCAACATTGTTTTTTGATGGAATTCGTCGATTTAAAGAGACTAAGGGGATTATTGTTAATACTTTTTTCGAGCTTGAATCGTTTTCTCTTCAGGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211480" ref_strand="+" ref_description="SGN-E211480 [cLEC-67-J9]">
      <seq>tgtcaacatgaaagaattaattttcattcctttagcaggattagggcacattgtatcagctattgaatttgcaaaacaaattctaaataaagatgaaaatttttccatctcttttctcatcatggaacttcctttagactatggtgtgaaaaatttcattcaatcactcacttctcaacctcgtttaaaattcatcgatatcaccctagacgaaaaaacatcatctcaattcctcaataaccatgaaacattcctctatgatttcatcgatggtcacaaaccacgcgtacgtgaatatgttcacaacatttgtaaaacaagtccatgttatggttttgttcttgacatgttttgtacatcgatgattgatatagctaacgaattcaatgtccctagttacatttacttcgcgtcaaacgcttcttttcttggcttatgtcttcattttgagactttaagaaatgaacaacattcagatacgtccagatacatgaactctaacgaggcattatcaatcccatggtttaaaaatctttgtcctactaaagttttgcctaagcatttggtagattcaagacttgcttcaacattggtttttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="69655" stop="68452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69355" g_stop="68752" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E211480" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69355" e_stop="68752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAAATCTTTGTCCTACTAAAGTTTTGCCTAAGCATTTGTTAGATTCAAGACTTGCTTCAACATTGTTTTTTGATGGA</genome_strand>
        <mrna_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGGTTTAAAAATCTTTGTCCTACTAAAGTTTTGCCTAAGCATTTGGTAGATTCAAGACTTGCTTCAACATTGGTTTTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202394" ref_strand="+" ref_description="SGN-E202394 [cLEC-6-L24]">
      <seq>tgtcaacatgaaagaattaattttcattcctttagcaggattagggcacattgtatcagctattgaatttgcaaaacaaattctaaataaagatgaaaatttttccatctcttttctcatcatggaacttcctttagactatggtgtgaaaaatttcattcaatcactcacttctcaacctcgtttaaaattcatcgatatcaccctagacgaaaaaacatcatctcaattcctcaataaccatgaaacattcctctatgatttcatcgatggtcacaaaccacgcgtacgtgaatatgttcacaacatttgtaaaacaagtccatgttatggttttgttcttgacatgttttgtacatcgatgattgatatagctaacgaattcaatgtccctagttacatttacttcgcgtcaaacgcttcttttcttggcttatgtcttcattttgagactttaagaaatgaacaacattcagatacgtccagatacatgaactctaacgaggcattatcaatcccatgttttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="69655" stop="68526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69355" g_stop="68826" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E202394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69355" e_stop="68826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAA</genome_strand>
        <mrna_strand>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390527" ref_strand="+" ref_description="SGN-E390527 [TUS-40-F11]">
      <seq>ccaacatgtattttacattaactaactagatttaaaacaaatatcggacacatattaaaaaattaatttgaaaaaatgatttttcaatttcagttttcattttaaaagtgaaattccatttttaccctttttcacctactatttaattttcattttcttttagaattttctagttatggtgttttccttcttccttccttctttttagtataacaagattaatggagtcaacaatttacagacgaaacatctgctcaaaaaaccaaccagaaaggctcaagctacgacgtttttgagctgatggatgaagaattcgagaggaagaggattgaagttaaaggctatggaagctttgggctgtgggtttgattttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="73566" stop="74686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73866" g_stop="74118" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74119" i_stop="74265" i_length="147">
            <donor d_prob="0.240" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74266" g_stop="74388" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="377" r_length="124" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E390527" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73866" e_stop="74118"/>
          <exon e_start="74266" e_stop="74388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTT-AAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTA</genome_strand>
        <mrna_strand>CCAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTG...................................................................................................................................................CTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326008" ref_strand="+" ref_description="SGN-E326008 [cTOD-1-C7]">
      <seq>caacatgtattttacattaactaactagatttaaaacaaatatcggacacatattaaaaaattaatttgaaaaaatgatttttcaatttcagttttcattttaaaagtgaaattccatttttaccctttttcacctactatttaattttcattttcttttagaattttctagttatggtgttttccttcttccttccttctttttagtataacaagattaatggagtcaacaatttacagacgaaacatctgctcaaaaaaccaaccagaaaggctcaagctacgacgtttttgagctgatggatgaagaattcgagaggaagaggattgaagttaaggctatggaagctttgggctgtgggtttgattttgctagcgatttcaggttgaagttcgtaaaaagatgtccaaacgggggtagattggtaattttggatgagagtaatagacggaacgtcgtcatccccggcggcgttacaattcccgatgtatctgaaaatatccgatgtgataaangggaccacattcgtttcaagtctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="73567" stop="74856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73867" g_stop="74118" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74119" i_stop="74265" i_length="147">
            <donor d_prob="0.240" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74266" g_stop="74556" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="543" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E326008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73867" e_stop="74118"/>
          <exon e_start="74266" e_stop="74556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATG</genome_strand>
        <mrna_strand>CAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTG...................................................................................................................................................CTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAANGGGACCACATTCGTTTCAAGTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325989" ref_strand="+" ref_description="SGN-E325989 [cTOD-1-A23]">
      <seq>caacatgtattttacattaactaactagatctaaaacaaatatcggacacatgttaaaaaattaatttgaaaaaatgatttttcaatttcagttttcattttaaaagtgaaattccatttttaccctttttcacctactatgtaattttcattttcttttagaattttctagttatggtgttttccttcttccttccttctttttagtataacaagattaatggagtcaacaatttacagactaaacatctgctcaaaaaaccaaccagaaaggctcaagctacgacgtttttgagctgatggatgaagaattcgagaggaagacgattgaagttaaggctatggaagctttgggctgtgggtttgattttgctagcgattacaggttgaagttcgtaaaaagatgtccaaaccggggtcgattggtaattttggatgagaataatagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="73567" stop="74763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73867" g_stop="74118" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74119" i_stop="74265" i_length="147">
            <donor d_prob="0.240" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74266" g_stop="74463" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="450" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E325989" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73867" e_stop="74118"/>
          <exon e_start="74266" e_stop="74463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGAC</genome_strand>
        <mrna_strand>CAACATGTATTTTACATTAACTAACTAGATCTAAAACAAATATCGGACACATGTTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATGTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACTAAACATCTG...................................................................................................................................................CTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGACGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTACAGGTTGAAGTTCGTAAAAAGATGTCCAAACCGGGGTCGATTGGTAATTTTGGATGAGAATAATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705754" ref_strand="+" ref_description="SGN-E705754 [FA28AB11]">
      <seq>cttccttccttctttttagtataacaagattaatggagtcaacaatttacagacgaaacatctggtcaaaagtcaaaccttttctctttcactttccttctcccgtcatctacttctgaccaaaacccctctacctatccccaaaccttatacccctcattttctcaaatgggtatttcttaaaatttccattttttgtactttttttcagctcaaaaaaccaaccagaaaggctcaagctacgacgtttttgagctgatggatgaagaattcgagaggaagaggattgaagttaaggctatggaagctttgggctgtgggtttgattttgctagcgatttcaggttgaagttcgtaaaaagatgtccaaacgggggtagattggtaattttggatgagagtaatagacggaacgtcgtcatccccggcggcgttacaattcccgatgtatctgaaaatatccgatgtgataaaggggaccacattcgtttcaagtctgatgttctcgaatttaatcagatgtcagaattgctaaatcaaaaatcatcaatacatggaaaggttccatcaggctatctaaatgccatttttgatttaagtggagcctggttgaatgattcagcagatgctaagtacctcgcgtttgatggttattttgtctcgttatactatttgcacctgacagcatccccattagtactccatgaccaagtgaagaaagctgttccaccgcattgggatccagcatccttatccagatttattcaggcttatgggacacacataattgtgggtatgggtgttggaggccaggacctactttgtgttaagcagaaaccatcttcaacagttcctcctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="73755" stop="76572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74055" g_stop="74573" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74574" i_stop="75373" i_length="800">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75374" g_stop="75612" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="758" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75613" i_stop="76168" i_length="556">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76169" g_stop="76272" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="862" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E705754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74055" e_stop="74573"/>
          <exon e_start="75374" e_stop="75612"/>
          <exon e_start="76169" e_stop="76272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAGGTTTCCATTTTTAATCTCCCTTTTAATGATTCTTTGCTTGGTTTAATTTTTTTTATTGTTTGATTATATGCATAATTTTAGATTCATGAAGTTGGTATGTGAATGAATTTTGTAGTTTTAACTGAATTTTTAGTTAAAGATCAAATTTTTAGATGATGTTCTAAAGTTTAGTGTTTGTATTTGATAAAGTTCAAATTTTTAGACAAGTTCTATGAATTTTGTTCTAGTTAATTAAGATGAAATTAACCACTCATAAAGTTGACTTAGAGAGCGTGTAAAAGACGAGAAGTGGCATTAGGTGTTCTTTTAAATCTGTTTTCAAGTCTTGGTGGTAAGAGTTACGTGGCATAGGAGGAAGGTACTATAAGGATTTAGTTGAGGTATGCTGAAGCTGGCTTAGGACAACTCGATTGTCAAAAACAAATAGTAGTAGAAGTTGTTCTAATGACCATTGTGAATTGATTGTTATAAAAAGCATAGTATAATCAATTCCAACTTGTTTGGGATTGAGGTGCCGGTATTGTTGTAACTACATAACTCTTTTTGGGTGTAATTTCTATTTGATGGCCAATACAAATTAGGGAAGTTGTTACATCTTACTGATTAGTTTTGTCAAGGTTTTAGAATGATTACTCCTCTCATTCTATTTTATATGATGAACTTTCTCGGTTGGTCTATTTTTTTTTTGAAAAAGATATCTTTTTATATATTATTGACAAAGTGATCTTTAGAGTTGTATTTTTGTCGAGCGTGTTATTGGCTGTCTCATTAGCTCCAAATTTTCCCTAAATTCATTGCAGATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAGGTAGCTTCTCCATTCCACTCTGTACTCTCTTTGCTTAATCGGATGACTAGCTGTTTGTTAGTTCTAACTGGCTAAGCACAATTTCTTAAAATATCATCGCAATGCCTTTGAGGAGACTGTTAACTGATGCATTTGTGGATCCCTTTTAGTTTTTGGATTAAGTACTGGTGCGTTCAAGGATAGCCAACCCCAACTTTCTTGAAGCATAAGTGTAATTGTTGTTGTACTGATTAATTTAAGGATCTTCAGTTCGTCATTCAAAATCTGCAAAACTCCATGATTAACTTGTCTCAGAGTAGGTAACTACAACATACCTAGTGTAATCCCACAACATCAGGGTCCATTGGAAACAACCTCTCTACCTCTACGAGGTAGGGGTAAAGTCCGCGCACACTCTCTACCCTCCCCAGGCCCCACCCTACTTGTGGGATTACACGGGGTATGTTGTTGTTGGTGAATGAGTTTATGCGACTGTATGGTAGTGTTTGGAGATGCATTTGTGTTTTCGTATGGTTGTCTTATTTCTTATGACTTCTAATCTGACAATCCTAAGCAGATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTG</genome_strand>
        <mrna_strand>CTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212650" ref_strand="+" ref_description="SGN-E212650 [cLEC-73-I5]">
      <seq>aacgtcgtcatccccggcggcgttacaattcccgatgtatctgaaaatatccgatgtgataaaggggaccacattcgtttcaagtctgatgttctcgaatttaatcagatgtcagaattgctaaatcaaaaatcatcaatacatggaaaggttccatcaggctatctaaatgccatttttgatttaagtggagcctggttgaatgattcagcagatgctaagtacctcgcgtttgatggttattttgtctcgttatactatttgcacctgacagcatccccattagtactccatgaccaagtgaagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="74166" stop="75877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74466" g_stop="74573" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74574" i_stop="75373" i_length="800">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75374" g_stop="75577" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="312" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E212650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74466" e_stop="74573"/>
          <exon e_start="75374" e_stop="75577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAGGTTTCCATTTTTAATCTCCCTTTTAATGATTCTTTGCTTGGTTTAATTTTTTTTATTGTTTGATTATATGCATAATTTTAGATTCATGAAGTTGGTATGTGAATGAATTTTGTAGTTTTAACTGAATTTTTAGTTAAAGATCAAATTTTTAGATGATGTTCTAAAGTTTAGTGTTTGTATTTGATAAAGTTCAAATTTTTAGACAAGTTCTATGAATTTTGTTCTAGTTAATTAAGATGAAATTAACCACTCATAAAGTTGACTTAGAGAGCGTGTAAAAGACGAGAAGTGGCATTAGGTGTTCTTTTAAATCTGTTTTCAAGTCTTGGTGGTAAGAGTTACGTGGCATAGGAGGAAGGTACTATAAGGATTTAGTTGAGGTATGCTGAAGCTGGCTTAGGACAACTCGATTGTCAAAAACAAATAGTAGTAGAAGTTGTTCTAATGACCATTGTGAATTGATTGTTATAAAAAGCATAGTATAATCAATTCCAACTTGTTTGGGATTGAGGTGCCGGTATTGTTGTAACTACATAACTCTTTTTGGGTGTAATTTCTATTTGATGGCCAATACAAATTAGGGAAGTTGTTACATCTTACTGATTAGTTTTGTCAAGGTTTTAGAATGATTACTCCTCTCATTCTATTTTATATGATGAACTTTCTCGGTTGGTCTATTTTTTTTTTGAAAAAGATATCTTTTTATATATTATTGACAAAGTGATCTTTAGAGTTGTATTTTTGTCGAGCGTGTTATTGGCTGTCTCATTAGCTCCAAATTTTCCCTAAATTCATTGCAGATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCT</genome_strand>
        <mrna_strand>AACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704796" ref_strand="+" ref_description="SGN-E704796 [FA25BB09]">
      <seq>cgattcagcagatgctaagtacctcgcgtttgatggttattttgtctcgttatactatttgcacctgacagcatccccattagtactccatgaccaagtgaagaaagctgttccaccgcattgggatccagcatccttatccagatttattcaggcttatgggacacacataattgtgggtatgggtgttggaggccaggacctactttgtgttaagcagaaaccatcttcaacagttcctcctgctgagctaaaagcacacttggatgacctcggagattgtctcttttctgatgaagcaagccctctgcctgagtggaaggcaaaagagggtaaaaagaaggtccccgaggtattcaatcgcatgttgcagtcgcataccatgcaatttactagcataacagagacatcaagcaaggatggtctcactataatttggtcaaaaagaggtggtgatgtgtttgcacaaagccactcgaagtggcttcagactgtggctgcttaccctgatggcatactcttcaaacttgtaccgattacttcgctcttaacaggaataccaggaagcggttatctcagccatgcaataaatttatatctacgctataagcctgctctagaggatttacagtgtttcctcgagtttcaagttcctagccagtgggcgccattgttctgcgagctgcctcttagccatcaaagaaaagtggcatcttgccctgcattgcagttctgtttattcggcccaaagctttgtgtgagacctacccaggttacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="75170" stop="78226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75469" g_stop="75612" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75613" i_stop="76168" i_length="556">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76169" g_stop="76367" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="343" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76368" i_stop="76562" i_length="195">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76563" g_stop="76640" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="421" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76641" i_stop="76722" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.081" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76723" g_stop="76906" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="605" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76907" i_stop="77755" i_length="849">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77756" g_stop="77922" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="772" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78098" g_stop="78106" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="781" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E704796" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75469" e_stop="75612"/>
          <exon e_start="76169" e_stop="76367"/>
          <exon e_start="76563" e_stop="76640"/>
          <exon e_start="76723" e_stop="76906"/>
          <exon e_start="77756" e_stop="77922"/>
          <exon e_start="78098" e_stop="78106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAGGTAGCTTCTCCATTCCACTCTGTACTCTCTTTGCTTAATCGGATGACTAGCTGTTTGTTAGTTCTAACTGGCTAAGCACAATTTCTTAAAATATCATCGCAATGCCTTTGAGGAGACTGTTAACTGATGCATTTGTGGATCCCTTTTAGTTTTTGGATTAAGTACTGGTGCGTTCAAGGATAGCCAACCCCAACTTTCTTGAAGCATAAGTGTAATTGTTGTTGTACTGATTAATTTAAGGATCTTCAGTTCGTCATTCAAAATCTGCAAAACTCCATGATTAACTTGTCTCAGAGTAGGTAACTACAACATACCTAGTGTAATCCCACAACATCAGGGTCCATTGGAAACAACCTCTCTACCTCTACGAGGTAGGGGTAAAGTCCGCGCACACTCTCTACCCTCCCCAGGCCCCACCCTACTTGTGGGATTACACGGGGTATGTTGTTGTTGGTGAATGAGTTTATGCGACTGTATGGTAGTGTTTGGAGATGCATTTGTGTTTTCGTATGGTTGTCTTATTTCTTATGACTTCTAATCTGACAATCCTAAGCAGATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTGAGCTAAAAGCACACTTGGATGACCTCGGAGATTGTCTCTTTTCTGATGAAGCAAGCCCTCTGCCTGAGTGGAAGGCAAAAGAGGGTAAAAAGAAGGTATTTTACACTCTCTAAGCAATGAAGATGCCTCAGTCCCAAACAAGCTGGGGGTGTCTATAATATATGAACCCTTGCTATTCCATTTTACATTCAGTTAAATAGGCACTTGATTTATGTTTGGGTATGTTCTGATATTTATGCACATAACTGGGGTCAATCATATCTGAATGGATTCTTATTTTAAATCTATAGGTCCCCGAGGTATTCAATCGCATGTTGCAGTCGCATACCATGCAATTTACTAGCATAACAGAGACATCAAGCAAGGATGTAAGTCACTCTCTGATTTTTTGTGTTCTGAAATGGAAGAAGTGGTAGACATGGTTAGTTATTAACGAATAATGTGGAGCAGGGTCTCACTATAATTTGGTCAAAAAGAGGTGGTGATGTGTTTGCACAAAGCCACTCGAAGTGGCTTCAGACTGTGGCTGCTTACCCTGATGGCATACTCTTCAAACTTGTACCGATTACTTCGCTCTTAACAGGAATACCAGGAAGCGGTTATCTCAGCCATGCAATAAATTTATATCTACGCTGTAAGTATTTCATAGTCTTTTATAGATGAGAAACATATTTTCCATCCATTAATTGTGTATAATCAGATAAAAAGGTGCATTGCTGCCTCTCTTTTATATAAAAAAATAAGTATTGTGTTTGTGTGAATTCCTCCTCATCAATTCCTTGATGAGATCTTTTGTGTGAATACAAAGTTACCTATTTAAAAAAATAATAATAATAAGTTGCGTGTTTCCGATACTGTTGCAGATATTATTTTAATTAGGTTTTAGGGATTTCTATAGTGTTCCAAAATGTAAAACCGACGAAATTAGATTAACCTACAACAATATCAAATTTGGTCATGCAAGTCCAAATTAGAGATTTTAAAGATTTCAAGAATTTGTTTTGGCTAATTTTTGTTAATGAATGTTAATGTAGCCGAATACATTTTTTGCTATCATATCTCTATGAGGGTCTAGTGTTTATCACCTTTTTTTACATCTTGACCATTTATTTGTAAACTAGTAGTTCTACTCACTGTGGCTTTATCTACCCTGCAGTATTTTACTGTGACTAAAACAAGGCTATCTTCTGATATGGTTCAATTGAAATTTACAAAGTGCATATATTCTGAGGCTGTTTCTTTTTCTTGTCTTGTGATCATTTTTCTTTGACATTCTCTTGAACTCCTCCGCATATTTACTTACCTTGACAAGAAATAATTATCCGTACAGAAGAATGTGAGGAACTTGTTTTCTTAATAAGTTCTAGTATTTAGCATATTTCATAAAATCGGCGTATTTTTCTTATCTATCAGCTTTTTCTTCTTCATTTTTCTGTTCAAGAAAGACGATGGTAGTTTTATCCGCGATTTGTTTCATTCTCAGATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGT</genome_strand>
        <mrna_strand>CGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTGAGCTAAAAGCACACTTGGATGACCTCGGAGATTGTCTCTTTTCTGATGAAGCAAGCCCTCTGCCTGAGTGGAAGGCAAAAGAGGGTAAAAAGAAG...................................................................................................................................................................................................GTCCCCGAGGTATTCAATCGCATGTTGCAGTCGCATACCATGCAATTTACTAGCATAACAGAGACATCAAGCAAGGAT..................................................................................GGTCTCACTATAATTTGGTCAAAAAGAGGTGGTGATGTGTTTGCACAAAGCCACTCGAAGTGGCTTCAGACTGTGGCTGCTTACCCTGATGGCATACTCTTCAAACTTGTACCGATTACTTCGCTCTTAACAGGAATACCAGGAAGCGGTTATCTCAGCCATGCAATAAATTTATATCTACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG...............................................................................................................................................................................GTTACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274012" ref_strand="+" ref_description="SGN-E274012 [cLEN-8-M2]">
      <seq>tcagccatgcaataaatttatatctacgctataagcctgctctagaggatttacagtgtttcctcgagtttcaagttcctagccagtgggcgccattgttctgcgagctgcctcttagccatcaaagaaaagtggcatcttgccctgcattgcagttctgtttattcggcccaaagctttgtgtgagacctacccaggttacaagtggtcaaaaacccgtcattggtttgcgcttgtatttagaagggaagaaatgcaaccacttagccatacatgtacaacatctttctagtttaccaaacattatggcatctaagtctgttaataacctaaccttatgcaagccatgtcaatggcgaggctccgatgattatgaatctagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="76577" stop="78584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76877" g_stop="76906" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76907" i_stop="77755" i_length="849">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77756" g_stop="77922" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="197" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78098" g_stop="78284" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="384" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E274012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76877" e_stop="76906"/>
          <exon e_start="77756" e_stop="77922"/>
          <exon e_start="78098" e_stop="78284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCATGCAATAAATTTATATCTACGCTGTAAGTATTTCATAGTCTTTTATAGATGAGAAACATATTTTCCATCCATTAATTGTGTATAATCAGATAAAAAGGTGCATTGCTGCCTCTCTTTTATATAAAAAAATAAGTATTGTGTTTGTGTGAATTCCTCCTCATCAATTCCTTGATGAGATCTTTTGTGTGAATACAAAGTTACCTATTTAAAAAAATAATAATAATAAGTTGCGTGTTTCCGATACTGTTGCAGATATTATTTTAATTAGGTTTTAGGGATTTCTATAGTGTTCCAAAATGTAAAACCGACGAAATTAGATTAACCTACAACAATATCAAATTTGGTCATGCAAGTCCAAATTAGAGATTTTAAAGATTTCAAGAATTTGTTTTGGCTAATTTTTGTTAATGAATGTTAATGTAGCCGAATACATTTTTTGCTATCATATCTCTATGAGGGTCTAGTGTTTATCACCTTTTTTTACATCTTGACCATTTATTTGTAAACTAGTAGTTCTACTCACTGTGGCTTTATCTACCCTGCAGTATTTTACTGTGACTAAAACAAGGCTATCTTCTGATATGGTTCAATTGAAATTTACAAAGTGCATATATTCTGAGGCTGTTTCTTTTTCTTGTCTTGTGATCATTTTTCTTTGACATTCTCTTGAACTCCTCCGCATATTTACTTACCTTGACAAGAAATAATTATCCGTACAGAAGAATGTGAGGAACTTGTTTTCTTAATAAGTTCTAGTATTTAGCATATTTCATAAAATCGGCGTATTTTTCTTATCTATCAGCTTTTTCTTCTTCATTTTTCTGTTCAAGAAAGACGATGGTAGTTTTATCCGCGATTTGTTTCATTCTCAGATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCG</genome_strand>
        <mrna_strand>TCAGCCATGCAATAAATTTATATCTACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG...............................................................................................................................................................................GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276485" ref_strand="+" ref_description="SGN-E276485 [cLEN-17-N18]">
      <seq>tctacgctataagcctgctctagaggatttacagtgtttcctcgagtttcaagttcctagccagtgggcgccattgttctgcgagctgcctcttagccatcaaagaaaagtggcatcttgccctgcattgcagttctgtttattcggcccaaagctttgtgtgagacctacccaggttacaagtggtcaaaaacccgtcattggtttgcgcttgtatttagaagggaagaaatgcaaccacttagccatacatgtacaacatctttctagtttaccaaacattatggcatctaagtctgttaataacctaaccttatgcaagccatgtcaatggcgaggctccgatgattatgaatctagcgaccaattcttagatcctgtcagatggccgagatattccaacgtgtgctcatctgtagttaagcatgatccaagctggatgcagggcgaaacgagtggcgtctttgtggtaactggtgcacaccttgtcagcaaagggaagtggcctaagacagtgcttcacctgcgtctacttttcacctatcttcctaactgcacaatacgaaagacagagtgggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="77456" stop="78804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77756" g_stop="77922" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="175" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78098" g_stop="78504" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="582" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E276485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77756" e_stop="77922"/>
          <exon e_start="78098" e_stop="78504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGC</genome_strand>
        <mrna_strand>ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG...............................................................................................................................................................................GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302377" ref_strand="+" ref_description="SGN-E302377 [cLEW-27-O4]">
      <seq>tttacagtgtttcctcgagtttcaagttcctagccagtgggcgccattgttctgcgagctgcctcttagccatcaaagaaaagtggcatcttgccctgcattgcagttctgtttattcggcccaaagctttgtgtgagacctacccaggtacttctttggtgtttctttcttagcaaaaggaccgctgctttattacaaaaataataaaagttgaaactatatgtgcttcattccaatgaggtattggtcttgccatggcttctaatgcactagtattgatgttcatgatgacacctaatcgatatgttcttcttatatgtaggttacaagtggtcaaaaacccgtcattggtttgcgcttgtatttagaagggaagaaatgcaaccacttagccatacatgtacaacatctttctagtttaccaaacattatggcatctaagtctgttaataacctaaccttatgcaagccatgtcaatggcgaggctccgatgattatgaatctagcgaccaattcttagatcctgtcagatggccgagatattccaacgtgtgctcatctgtagttaagcatgatccaagctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="77475" stop="78664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77775" g_stop="78364" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E302377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77775" e_stop="78364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATG</genome_strand>
        <mrna_strand>TTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263116" ref_strand="+" ref_description="SGN-E263116 [cLEG-62-A5]">
      <seq>cgagctgcctcttagccatcaaagaaaagtggcatcttgccctgcattgcagttctgtttattcggcccaaagctttgtgtgagacctacccaggttacaagtggtcaaaaacccgtcattggtttgcgcttgtatttagaagggaagaaatgcaaccacttagccatacatgtacaacatctttctagtttaccaaacattatggcatctaagtctgttaataacctaaccttatgcaagccatgtcaatggcgaggctccgatgattatgaatctagcgaccaattcttagatcctgtcagatggccgagatattccaacgtgtgctcatctgtagttaagcatgatccaagctggatgcagggcgaaacgagtggcgtctttgtggtaactggtgcacaccttgtcagcaaagggaagtggcctaagacagtgcttcacctgcgtctacttttcacctatcttcctaactgcacaatacgaaagacagagtgggcagctacaccagagggtactcataggtcaagtttcttaacaaatctcagcacaacttttactttcactcagcggacaaagacagatgctgcaccaaagcagcttcctgctgctcttaactcgggcgtatatccagacggacctccagtaccagttcgatcaacaaagctgctcaagtatgtagatacggctgagattgcacgagggccatacgacactcctggacattggttggtactgctgctagcttgttacagaaggtgggaagatanggttgcatgtgaagttgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="77529" stop="79096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77829" g_stop="77922" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78098" g_stop="78796" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="790" r_length="696" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E263116" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77829" e_stop="77922"/>
          <exon e_start="78098" e_stop="78796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGCTACACCAGAGGGTACTCATAGGTCAAGTTTCTTAACAAATCTCAGCACAACTTTTACTTTCACTCAGCGGACAAAGACAGATGCTGCACCAAAGCAGCTTCCTGCTGCTCTTAACTCGGGCGTATATCCAGACGGACCTCCAGTACCAGTTCGATCAACAAAGCTGCTCAAGTATGTAGATACGGCTGAGATTGCACGAGGGCCATACGACACTCCTGGACATTGGTTGGTAACTGCTGCTAAGCTTGTTACAGAAGGTGGGAAGATAGGTTTGCATGTGAAGTTTGCTCTA</genome_strand>
        <mrna_strand>CGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG...............................................................................................................................................................................GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGCTACACCAGAGGGTACTCATAGGTCAAGTTTCTTAACAAATCTCAGCACAACTTTTACTTTCACTCAGCGGACAAAGACAGATGCTGCACCAAAGCAGCTTCCTGCTGCTCTTAACTCGGGCGTATATCCAGACGGACCTCCAGTACCAGTTCGATCAACAAAGCTGCTCAAGTATGTAGATACGGCTGAGATTGCACGAGGGCCATACGACACTCCTGGACATTGGTTGGT-ACTGCTGCT-AGCTTGTTACAGAAGGTGGGAAGATANGGTTGCATGTGAAG-TTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398116" ref_strand="+" ref_description="SGN-E398116 [TUS-41-B3](-)">
      <seq>cgaatcataattttttgcgtgtacatattctgaggtagccttgtccttttctttatatcatttttattcagttacatttagtcttatcagcttccaatatcttgatgatatatcatattgtttaatttatccaagaaatggccaacaggggaggaaaatgttataaaagggtccagaagaatttagtggaagaantcgatttatttaaaggtctttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="78511" stop="79315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78811" g_stop="79037" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E398116" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78811" e_stop="79037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATCATAATTTCTTGTGTGTACATATTCTGAGGTAGCCTTGTCCTTTTCTTTATATCATTTTTATTCAGTTACATTTAGTCTTATCAGCTTCCAATATCTTGATGATATATCATATTGTTTAATTTATCCAAGAAATGGCCAACAGGGGAGGAAAATGTTATAGTATTGTACAGAAGAATTTAGTGGAAGAA-TCGATTTATTTTTTGTTCTTTCCACCTTTTCAA</genome_strand>
        <mrna_strand>CGAATCATAATTTTTTGCGTGTACATATTCTGAGGTAGCCTTGTCCTTTTCTTTATATCATTTTTATTCAGTTACATTTAGTCTTATCAGCTTCCAATATCTTGATGATATATCATATTGTTTAATTTATCCAAGAAATGGCCAACAGGGGAGGAAAATGTTATAAAAGGGTCCAGAAGAATTTAGTGGAAGAANTCGATTTATTTAAAGGTCTTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251427" ref_strand="+" ref_description="SGN-E251427 [cLEG-9-G8]">
      <seq>tagaggtgttattcctcttgttgatgcagatatacaaacctctggtgcaaaagctgcttcttgtgctcaattagcttcactggccacttcttctactaaagtttatagtgaccaaggtgcaccagcatcatttaaagttcctgctggagcagttattccatttggttccatggaaacggcattggaaacgaacaagttaatggagaccttcacattgcttgttgagcagatagaaacagctgaaattgatggcggtgaacttgataaacactgtgaggatctccagaagttaatatcttcgttattgcctggacaagatgtcatcgaaagcttgggagaaatatttcccggtaatgcacgtttaatagtgcgttcaagtgctaatgtcgaggacttggcggggatgtcagcagccggactttatgattcaattcctaatgttagcccttcagatccggtaaggtttggacatgctgtagcccgtgtttgggcctcgttgtatactagaagagcagtactgagccgcagagctgctggtgtgtcccagaaagatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="93759" stop="92247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93459" g_stop="93359" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93358" i_stop="93003" i_length="356">
            <donor d_prob="0.083" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93002" g_stop="92547" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="557" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E251427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93459" e_stop="93359"/>
          <exon e_start="93002" e_stop="92547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAGGTAGTCTTGGTTCTTTGCAGGACAACCCTCTCTTCATATCATCCGTACTTGTTACTATTTTATTCTTAGTTGCTGTAGCTAAAATGTCAATTCTGCTTAACGAACCCTTTATTTAAAAATGAAAGTTCCATGTAAATGTTTTTGCTCCCATTCTATTTTTTTTTTTTCCTTTTTCCAGTTGAAAATTTGGTCCTTTGCATTTCCTATGTTTGTCATAGTTAAATTTCGGTGTTGGTCAACATCGATTGGTACTTTATTTTTGCGTTTAGCTTATCATAGCACAAACGATGGATGCCATTGGTGCAATATATGTCTTTGCCCTTTTTTTTTGGGTCTGATGATTTATCTGATTGCAGTTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGCCTCGTTGTATACTAGAAGAGCAGTACTGAGCCGCAGAGCTGCTGGTGTGTCCCAGAAAGATGCTA</genome_strand>
        <mrna_strand>TAGAGGTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAG....................................................................................................................................................................................................................................................................................................................................................................TTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGCCTCGTTGTATACTAGAAGAGCAGTACTGAGCCGCAGAGCTGCTGGTGTGTCCCAGAAAGATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551438" ref_strand="+" ref_description="SGN-E551438 [TUS-54-B7]">
      <seq>gtgttattcctcttgttgatgcagatatacaaacctctggtgcaaaagctgcttcttgtgctcaattagcttcactggccacttcttctactaaagtttatagtgaccaaggtgcaccagcatcatttaaagttcctgctggagcagttattccatttggttccatggaaacggcattggaaacgaacaagttaatggagaccttcacattgcttgttgagcagatagaaacagctgaaattgatggcggtgaacttgataaacactgtgaggatctccagaagttaatatcttcgttattgcctggacaagatgtcatcgaaagcttgggagaaatatttcccggtaatgcacgtttaatagtgcgttcaagtgctaatgtcgaggacttggcggggatgtcagcagccggactttatgattcaattcctaatgttagcccttcagatccggtaaggtttggacatgctgtagcccgtgtttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="93754" stop="92312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93454" g_stop="93359" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93358" i_stop="93003" i_length="356">
            <donor d_prob="0.083" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93002" g_stop="92612" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="487" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E551438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93454" e_stop="93359"/>
          <exon e_start="93002" e_stop="92612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAGGTAGTCTTGGTTCTTTGCAGGACAACCCTCTCTTCATATCATCCGTACTTGTTACTATTTTATTCTTAGTTGCTGTAGCTAAAATGTCAATTCTGCTTAACGAACCCTTTATTTAAAAATGAAAGTTCCATGTAAATGTTTTTGCTCCCATTCTATTTTTTTTTTTTCCTTTTTCCAGTTGAAAATTTGGTCCTTTGCATTTCCTATGTTTGTCATAGTTAAATTTCGGTGTTGGTCAACATCGATTGGTACTTTATTTTTGCGTTTAGCTTATCATAGCACAAACGATGGATGCCATTGGTGCAATATATGTCTTTGCCCTTTTTTTTTGGGTCTGATGATTTATCTGATTGCAGTTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGC</genome_strand>
        <mrna_strand>GTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAG....................................................................................................................................................................................................................................................................................................................................................................TTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688587" ref_strand="+" ref_description="SGN-E688587 [t3_tus_54_B07]">
      <seq>gtgttattcctcttgttgatgcagatatacaaacctctggtgcaaaagctgcttcttgtgctcaattagcttcactggccacttcttctactaaagtttatagtgaccaaggtgcaccagcatcatttaaagttcctgctggagcagttattccatttggttccatggaaacggcattggaaacgaacaagttaatggagaccttcacattgcttgttgagcagatagaaacagctgaaattgatggcggtgaacttgataaacactgtgaggatctccagaagttaatatcttcgttattgcctggacaagatgtcatcgaaagcttgggagaaatatttcccggtaatgcacgtttaatagtgcgttcaagtgctaatgtcgaggacttggcggggatgtcagcagccggactttatgattcaattcctaatgttagcccttcagatccggtaaggtttggacatgctgtagcccgtgtttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="93754" stop="92312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93454" g_stop="93359" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93358" i_stop="93003" i_length="356">
            <donor d_prob="0.083" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93002" g_stop="92612" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="487" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E688587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93454" e_stop="93359"/>
          <exon e_start="93002" e_stop="92612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAGGTAGTCTTGGTTCTTTGCAGGACAACCCTCTCTTCATATCATCCGTACTTGTTACTATTTTATTCTTAGTTGCTGTAGCTAAAATGTCAATTCTGCTTAACGAACCCTTTATTTAAAAATGAAAGTTCCATGTAAATGTTTTTGCTCCCATTCTATTTTTTTTTTTTCCTTTTTCCAGTTGAAAATTTGGTCCTTTGCATTTCCTATGTTTGTCATAGTTAAATTTCGGTGTTGGTCAACATCGATTGGTACTTTATTTTTGCGTTTAGCTTATCATAGCACAAACGATGGATGCCATTGGTGCAATATATGTCTTTGCCCTTTTTTTTTGGGTCTGATGATTTATCTGATTGCAGTTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGC</genome_strand>
        <mrna_strand>GTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAG....................................................................................................................................................................................................................................................................................................................................................................TTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704858" ref_strand="+" ref_description="SGN-E704858 [FA25BH06]">
      <seq>gaaaaacgttagctcttggaatgatccaattggagcacttacagtaggaatccaacagctaggcctatctggttggaagcccgaggagtgcaaagctgttggaaatgaacttctgtcatggaaagaaaggggtatttcagaaattgaaggcagcgaagatggtaagactatatgggcattaagactaaaagcgactcttgatagaagtcgaaggttaactgaggagtattccgagacacttatccaaatattccctgaaaaagtacagattttaggaaaatctttgggaattcctgaaaatactgtcagaacatttactgaagctgaaattcgagcaggtgtggtttttcaggtttcgaagtttgctactctacttttgaaggctgttagaaggacaattgggtcatcgggatgggacgttctcgttccaggagatgcttttggagagctaatacaggtggatagaattatccccggcactctaccatcatctgcaacaggacctgttattcttgtagtgaacaaagctgatggagatgaagaggtgactgccgcagggagtaacatatctggagttgtacttctacaggagctaccacatttatctcatctaggtgttagggcccggcaggaaaaggttgtttttgtgacctgcgatgacgatgacaaagtttctgatgtaagacagctactaggaaaatatgtgaggttaaaagcatcatcaactggtgtaaagttaactgcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="96668" stop="93451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96368" g_stop="96220" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96219" i_stop="96132" i_length="88">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96131" g_stop="96013" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="268" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96012" i_stop="95445" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95444" g_stop="95374" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="339" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95373" i_stop="95240" i_length="134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95239" g_stop="95122" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="457" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95121" i_stop="94732" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94731" g_stop="94645" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="544" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94644" i_stop="94537" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94536" g_stop="94450" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="631" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94449" i_stop="93970" i_length="480">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93969" g_stop="93893" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="708" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93892" i_stop="93793" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93792" g_stop="93751" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="750" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E704858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96368" e_stop="96220"/>
          <exon e_start="96131" e_stop="96013"/>
          <exon e_start="95444" e_stop="95374"/>
          <exon e_start="95239" e_stop="95122"/>
          <exon e_start="94731" e_stop="94645"/>
          <exon e_start="94536" e_stop="94450"/>
          <exon e_start="93969" e_stop="93893"/>
          <exon e_start="93792" e_stop="93751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACGTTAGCTCTTGGAATGATCCAATTGGAGCACTTACAGTAGGAATCCAACAGCTAGGCCTATCTGGTTGGAAGCCCGAGGAGTGCAAAGCTGTTGGAAATGAACTTCTGTCATGGAAAGAAAGGGGTATTTCAGAAATTGAAGGTATCTTATTGTCATCAATGATTTATCATGCGTGCAATCAAGAATGCATCAGCAATCCTGAAAATTTTTGGGCTTATCCTTACTGAAGGCAGCGAAGATGGTAAGACTATATGGGCATTAAGACTAAAAGCGACTCTTGATAGAAGTCGAAGGTTAACTGAGGAGTATTCCGAGACACTTATCCAAATATTCCCTGAAAAAGTACAGGTATAACAACTTTTTGGAAATGAATTATTCCTTCTGTTTTAATTTTCTTGTCTTACTTTCCTTTTTAGTCTGTTTAAATAAGAATGTTTCTTTCCTTTTTGACAATTCTTTAATTCTAACTTTTCACATGACATGTTTAAGACCACAAAACTGGGCATTTTGATAGCTTTAGCTTAAGATGACAAGATTCAAAAGTCTTGTTTACTTTCTTTAACTTTGTGTCAAGACAAAACCAAACAAATTGAAACGTAGGAGTACTTCAGAAGACAGTAGTGGCTTCTAAGCTTTCAATTTTTCTCATGGTACCGGTTTGGCTATTATTTTCAGTTCTTGAGTTATTGTTCACTAGTTTGGAATTATTATTTTTAAAAACTCCATTATATGTGGCATGCCTGTAAGCTATCCAAATTGGAACTACATTTGGACCACATTGTGATATGATTAGCTAAGTCAGTTGGAGGGAAATTGATTTTCCTATATCAGCCCTTATTTCATTCAGTGTCATTGACATGCTTGTTAGGTAAGAAATATATAACTTGGGATTTTAACTGAGTATATGGTCTTGCAGATTTTAGGAAAATCTTTGGGAATTCCTGAAAATACTGTCAGAACATTTACTGAAGCTGAAATTCGAGCAGGGTATGATTGCACAAATATTTTATTGTTCTGAATATTGTTGCTCCAATCTTATCCTTCTGATTTCTCTGTCTGACAGAGGATGTTACTGTAAGTTAACAAAGTGCCTAACTTTGTAAAATACATGCAATTTGTAGTGTGGTTTTTCAGGTTTCGAAGTTTGCTACTCTACTTTTGAAGGCTGTTAGAAGGACAATTGGGTCATCGGGATGGGACGTTCTCGTTCCAGGAGATGCTTTTGGAGAGCTAATACAGGTGAATATTATATTGTCAATCTCTTATTCCAGCAATTTATTTATATATTTAGAGCTCTAGCTGGTATTTGCTCTACAAAATTGGTTAATTTGCTCGAAATGCATGCGCAAGCTGGCCCGAACATCGGGGTATAGAAAGATTTGGTTTATTTGTTAGAAGTAAGATTTTTTGTCGCAAAAGAGTCTAGAAGAATTCATTTTGATCAAGCTACAAAGCACTTGGGTTTATCTGAATGCTTGCAGTGTAACTTCTTCTATCCAGTTCAGTACTTGGTCTATGTTTTGACCTTAACTTCATGCTGTGAATTGCATCTTCTCTGTTTGAAATTTTATCCAAGGTAGAACTAGTTTTATATAGTGCTGATATGTTGTCTGATTACTCACATTTCAGGTGGATAGAATTATCCCCGGCACTCTACCATCATCTGCAACAGGACCTGTTATTCTTGTAGTGAACAAAGCTGATGGAGATGAAGAGGTTTCTAGCGCTTCTCATCTCTGTGTTGCTTCTGCAGGATCCTAAGGCATTAGAAACTTATGTATTGCACGGAAAAGGATACTGAATGGCCTGTTGACCATCTTGCAGGTGACTGCCGCAGGGAGTAACATATCTGGAGTTGTACTTCTACAGGAGCTACCACATTTATCTCATCTAGGTGTTAGGGCCCGGCAGGCGAGTTCCAAATCTTGTCTCCATGTCCTAAAGTTAATTATAGTGTCTTGATTTTGTTATCTATCACGGATTTGGAGAGAAGGTTGATAGGCAGTGGAGTGTTTTTCTTACTTTTTGTCGGATTTCTGCTTGGCTAGTATTAGCCGTATTCTTGTAGTGTCTTGCTTTTGATATGATGTATCATCATCCATTGTTTATCATGTTTCAGTTATTGCACTATTTTTTTTTTTATATTAGTTGCTATGTCTTCTTCACTGTCGTTCTTACTTTTCGTACTTAGATTTGCTATTCTCTAGCTGAGGGTCCTTAGGAAACAACCTTTCTACCTCCACGAGGTAGGGTAAGGTCTGTGCACACTCTACCCTCCCTAGACCCCACTTGTGGGATCTTACTGGGTATGTTGTTGTTGTCCAAAGTTAATTATAGGCTTTCTTTTATATGAGTGTTAGTTACAGAAGTGTGACATACTTTTGATTGCAGGAAAAGGTTGTTTTTGTGACCTGCGATGACGATGACAAAGTTTCTGATGTAAGACAGCTACTAGGAAAATATGTGAGGTTATATTCTTCAAACCTTTTAACTCACTGATGATTATAATGCATTAGTAGTTTCTTTATTTTGTCCTTAATTTTCTTTGGGTTTTCCCTTTTCTTTCAGGTTAGAAGCATCATCAACTGGTGTAAAGTTAACTGCTTCTTC</genome_strand>
        <mrna_strand>GAAAAACGTTAGCTCTTGGAATGATCCAATTGGAGCACTTACAGTAGGAATCCAACAGCTAGGCCTATCTGGTTGGAAGCCCGAGGAGTGCAAAGCTGTTGGAAATGAACTTCTGTCATGGAAAGAAAGGGGTATTTCAGAAATTGAAG........................................................................................GCAGCGAAGATGGTAAGACTATATGGGCATTAAGACTAAAAGCGACTCTTGATAGAAGTCGAAGGTTAACTGAGGAGTATTCCGAGACACTTATCCAAATATTCCCTGAAAAAGTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGGAAAATCTTTGGGAATTCCTGAAAATACTGTCAGAACATTTACTGAAGCTGAAATTCGAGCAGG......................................................................................................................................TGTGGTTTTTCAGGTTTCGAAGTTTGCTACTCTACTTTTGAAGGCTGTTAGAAGGACAATTGGGTCATCGGGATGGGACGTTCTCGTTCCAGGAGATGCTTTTGGAGAGCTAATACAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAGAATTATCCCCGGCACTCTACCATCATCTGCAACAGGACCTGTTATTCTTGTAGTGAACAAAGCTGATGGAGATGAAGAG............................................................................................................GTGACTGCCGCAGGGAGTAACATATCTGGAGTTGTACTTCTACAGGAGCTACCACATTTATCTCATCTAGGTGTTAGGGCCCGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGTTTTTGTGACCTGCGATGACGATGACAAAGTTTCTGATGTAAGACAGCTACTAGGAAAATATGTGAG....................................................................................................GTTAAAAGCATCATCAACTGGTGTAAAGTTAACTGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736374" ref_strand="+" ref_description="SGN-E736374 [LC05CC02]">
      <seq>ccctattaatgctcgaaactggtggcggaagcttgaggttgttcgataactagttgttgaaaacatggatagttcacatcgcttggaggctctcacgtatgcagctgtctatctaaagtggataaatacagggcaaattccttgccttgaagatgggggtcaccatcgaccaaatagacatgcagagatttccaggcttatatttcgtgaagtagaaaaagtcttgagcaggaaagacactacacttcaggaaatacttgtgatccgcaagatgcaaccgtgcttgccttcttttaaagcagaattcactgcatccgttcctttaacgagaatcagggacatcgctcataggaatgatattccgcatgatcttaagcaagaaatcaaacatactatacaaaacaagctccatagaaatgctggccctgaagatctagtatccacagaagcaatgctcgaaagaattaccaaacaacctggacaatacagtgaggcatttgtacagcaattcaagattttccacaatgaactaaaagatttcttcaatgctgggagtcttgatgaacagctggaatctataagagaatcactcgacggaagtagcttgacaatgctttcatcattcttggagtccaaaaaggaattggttagattggatgaaaaacataatgtttcagagactgaaagaactggatttctagtcaggactatcaactctctgaatgctcttcgtgaagtaatttccaagggtcttgaaagtggcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="101969" stop="96628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101672" g_stop="101642" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101641" i_stop="100260" i_length="1382">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100259" g_stop="100173" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100172" i_stop="100104" i_length="69">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100103" g_stop="99972" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="250" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99971" i_stop="99130" i_length="842">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99129" g_stop="99004" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="376" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99003" i_stop="98893" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98892" g_stop="98714" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="555" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98713" i_stop="98017" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98016" g_stop="97932" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="640" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97931" i_stop="97055" i_length="877">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97054" g_stop="96927" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="768" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E736374" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101672" e_stop="101642"/>
          <exon e_start="100259" e_stop="100173"/>
          <exon e_start="100103" e_stop="99972"/>
          <exon e_start="99129" e_stop="99004"/>
          <exon e_start="98892" e_stop="98714"/>
          <exon e_start="98016" e_stop="97932"/>
          <exon e_start="97054" e_stop="96927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGAATGCTCGAAACTGGTGGCGGAAGGTGAGAAGATAGATTAGATCTCGTCTTGATGGCATGTTTGCATTCTGGAAATTGACTGTGCCATAAAAGAATTACTTCTGTGCAAGATAGCATCACAGGGCATCTCTGCAATTTATTTTCTATAATTCATCAATCTGCATTGTTGGTATCCTCACTATTGCAAGAGTGTCTTCTTTTAAGCTCACTCATCACTTGTGTGTGAAGTCCTCCAAGTGTGTCTCCTTTTAGCTATGGGGATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGCTAACACTCATGATGATTAATGAGTGGAGAAACGGTATGAAGGAAGAGATGGAATGAGCAAAGAGGGAAGAGAATAACTTTCCTTGCGTTCTGTGTAAGATCAAGTGTGGCCACAGAGGAAAGTTGGAGAGAGATGTTTCCAGGAGATTGAGAGATATTTTTTGTAGAGCGAGCACTTGGTTCTTATGCAAATTGACTGATGAACTACAATATTCTCTTCTTTCAGTTTTATTTGTTGCTAAGTAGTCCATGGAGAAATTGATTGCTCTCCATTTGGTGGTCTACTATACTACAAGTTGCTTTTCATCCATCAGATTAACAGGCCAAAACATATCTTGAGATAGCTATGTGAAAGTGCATTTTCTTGTGCTTAGATGAAGCTTGAATTTGTTGTTCAGCTATATCAATAAGGATGGGAGAGCCGTTACTTCATATTAGATTTAGATTATTGTTATCCTTTGCCTTATTTAAGATGTTTTTTTAATGCCAGTACAATGATATATCTTGAGATAGTTACATAGTGGTGCCTGTTAGTGTGGTTTGGCGAAGTTGTTTCTCATTGATACCAATAAGGATGATAAAACTATCATTTACTGTTAGATTTAGGTTATTGTTACTGGTTCTCATTAGAGATACAGTATGGAATAGCAGCGGCTCAAACAGAGAGACAGAGGAAGCATGAGCTTTTAAAAGCTAAAACTTCCTAGCATAATGCTAATGAGTTGGCTGTATGTGAACTCATAAGTCATAGCAAAACTATTGGCGTCTATTTGAAATATTCCCCTTTTCTCATTCTTTTAACTTTACTAATTTGATTATATTTAAAGATAGTTTTAGTTCTTCTCAGTTGGAGATAACTAAATATACTTTGGAACAACGGTAGATTGTGTGATTAAAAAATAGCTGGTTGAAGAGAGGTAACACCAGCACTAAAGCATGAGAAGTGATGTTATTCTCTATTAATTGCAATTCTTGTGGTTTGTTACTTTTCCATTTCGTGAAAAGGCTCTAACTTCAGAATTGTCTACATCTCTTTATAATTAACTGTCTCCTTTTTTTTTTACTGGTTTTAGCTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAGGTCTCGTATATTTTTAGATGACTTGCTTGATTCATTTCTATCTCTACTGAATATTACTCTTGGGTGCAGTGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAGGTGTTCAACCGTTAAGTGCACCTCATTACGCTTATTTTAATTTTTGTTATGTCTTTCGATTCTGGAACATGTTGGTTGCTCTTGAGAAATTAATGTTGATCCGTTGAACTGGTTCAATTCGTTCTGCAAATTCTTATTCGATTTGTTAAGTGGTGGTACTATATGGTAACAATAAGTCATAGGTAACTGGAAATCTCAACAAGGTAGAGGGGAAGCCCATTATCTGCCGAGTTTCGAACTGTGCCTTTTGTCCCTCAGGAATTTCTCGGTTATAAAAAATGTGACTGGAAATCACACAAATGTAACTTCAGTTTAGACGCAACAGTAGATATTGATCTCTTTAGTATTTTGTTAGGAAGAATTCAGTTGATCTATGTTTTATTCCTTGAATTTTTATTTAGAGCACTGCTCTGAAGAGAAAATGTTATTGCTTCTACAATTGAGCTAATTCTGTGGTTCAGTTTTTTTTCTTCTTGATGGTAAAATCAAATATGCTTTTCTAATGAAGAAGGGTCTGAACTTCTGACTGCTTTTCTTTCTTAAATCTCATTAATATAGTTAGAAAGTTCCGTCGGCAAAGTAACAATTGGTCAATATAAGCTCTTGCTTCAAATATTATTAGACCATACATCTGCTGTCTGTAATATGATTATGAGATTTAAAGCTTTTGAGTTGAAATGCAAACAAAAAGGTAACTTGGGAACATGATACAGGAAGGAAAGGGAGTTAGAAAAATCATCACTCTGAACTTTGTGGATATGAGTCAACCGTTATCTTGTTCTCGAGCTTTTCCTTACCCAGTTTTGAGTGGCTTAGAAAAGTTTTCTTTTCATTATATGCAGGAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAGGTTGTATACTACCAAAATACTTATTTTTAATTTTTCCTTGCATTCTCAATATTTTCATGTTTTTTACGTAATATATTTGTCCTTCTTACTATTAAAATAACCTTACTTCAGCAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAGGTATGACCTTCATCTCTTACTTGTTTCAAAATATTTGATTTCACAAAAAGTCAGTCCTATTATGGGATAAAAAGGAGATAAGTTTAGTAGATCGACTAATCAAGCTTCTCCGTAGCATGCATTGGTCCAGATCCATTACTTTATAAAATACGCTTCTTCACTTGCTAGATAATAGTGTCTCACCAGTATGTTGTTCCTCAATTTCTTCCTGAATTGTTTTTCTCTACAACAATGTTTTTTCTTTCCTATATTAAATTTTGCTACTTTGCAGTACCCTCACTTTATTAATTGAGAGGTATCTAGACATGACATGTCTGAGAGATCAGTTGGCTCGTGATGTATGAACTTCACTGTTTGCTATCATACGTGCAAATGTGGTTCTCTCCCAAGGAGAAAAAAGTAGATTGATTGCATTGTTATAGAGTCGTTTAAGGATATTGTTAAGTAACTTTTAGTCTGATTAAATGTGCTCTTTGACAGTGAAGAAAAATGATTTGGGTGCATGTTATAGAATTTTCTCGTCCTTAGTAATGGGTCACCCTTCAAGGGATATGTTTCTCCAGTACGTAATTCCCAATCATGAACGTCCGTATGATTTACACGGAATTAATTAGGTGCAATATGTTCCTACAAAAATGCTTACACACTGGAAAATGAAATTTGCTTGAAATAACTTCTTTCTGTTCTGTCTATTCAGTCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAGGTCAGTGTATTTGTTTTGGTGATAGCTCTACCTAAGAGAAGCTCCAAAGTTTTTACTAATGCGATGAGATTTTTAGCAATAGCTGTGTGTTCTTTGATATTATGAATGTAGGTTAAACTGTTAGTTAGGTATTTATGTACATAAATTTGACTTAGATGTAATATAGTGAAGGTTTACGAGCTACTCGGGGCTTCTTTCATCTTTCTCAATTCATATGGGTCACTGACTCTGATCCGTACCCACTCTTCAACTATCTCTCTGCTCCAATTATCCTCTTCAGCCTATTCTCTGTCTCTCTACTTCAAACCCACTATCTTCTAAACAAAAGGAAAAAGGTATAAAAGAAAAACAAGTAAAAAAGGAAAATCTTTCACCCACATGTAAACCTAGAATCTGTTTACTCATGCGGCATACAAGAAGGTGTGGGAGAATAGAGTGTCCCTCACGATTGTGCAAGAATTTCTAAAAGAGTTTTCAGTGTCATGGGTGACGCCATCGATAACCTTAAGGTTTTGGGTTCGATGCTTAGATTATATCAAAATATTAAAGCAAGAAATGTATGAATAGTGATTCTCGGCAGTTTGGTGTCTTACCTTCAGGATTACTCGGCAGTCTCAGGCTATGATTGATACCATTTTCTTACTAAGTGACTGAAAAAAGGAAACAAAAAAATATTTTTCTTACGGAGGGGTAAAAATGTTATCTGGTTCACTTGCGATGAAATGCATCTTTTGCTTTCTATAGACCCTATGTCTCCTCAAGAGATAGCATATACGTATTTTGGCCTCTTGGTATTTTCCTGTAATCAAGGATCTCTTAGTTGGATAACTCCTATTATTAAAACTGACGTTGATTCTGGCTTTGGCGTCTCTCCCAGGAATTGGTTAGATTGGATGAAAAACATAATGTTTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCGTGAAGTAATTTCCAAGGGTCTTGAAAGTGGCCTCCG</genome_strand>
        <mrna_strand>CCCTATTAATGCTCGAAACTGGTGGCGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGGTTGTTCGATAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAG.....................................................................TGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAG...............................................................................................................CAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTACAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTTAGATTGGATGAAAAACATAATGTTTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCGTGAAGTAATTTCCAAGGGTCTTGAAAGTGGCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344684" ref_strand="+" ref_description="SGN-E344684 [cTOF-14-J8]">
      <seq>ttcacatcgcttggaggctctcacgtatgcagctgtctatctaaagtggataaatacagggcaaattccttgccttgaagatgggggtcaccatcgaccaaatagacatgcagagatttccaggcttatatttcgtgaagtagaaaaagtcttgagcaggaaagacactacacttcaggaaatacttgtgatccgcaagatgcaaccgtgcttgccttcttttaaagcagaattcactgcatccgttcctttaacgagaatcagggacatcgctcataggaatgatattccgcatgatcttaagcaagaaatcaaacatactatacaaaacaagctccatagaaatgctggccctgaagatctagtatccacagaagcaatgctcgaaagaattaccaaacaacctggacaatacagtgaggcatttgtagagcaattcaagattttccacaatgaactaaaagatttcttcaatgctgggagtcttgatgaacagctggaatctataagagaatcactcgacggaagtagcttgacaatgctttcatcattcttggagtccaaaaaggaattggttagattggatgaaaaacataatgtttcagagactgaaagaactggatttctagtcaggactatcaactctctgaatgctcttcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="100518" stop="96660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100218" g_stop="100173" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100172" i_stop="100104" i_length="69">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100103" g_stop="99972" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="178" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99971" i_stop="99130" i_length="842">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99129" g_stop="99004" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="304" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99003" i_stop="98893" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98892" g_stop="98714" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="483" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98713" i_stop="98017" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98016" g_stop="97932" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="568" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97931" i_stop="97055" i_length="877">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97054" g_stop="96960" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="663" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E344684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100218" e_stop="100173"/>
          <exon e_start="100103" e_stop="99972"/>
          <exon e_start="99129" e_stop="99004"/>
          <exon e_start="98892" e_stop="98714"/>
          <exon e_start="98016" e_stop="97932"/>
          <exon e_start="97054" e_stop="96960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAGGTCTCGTATATTTTTAGATGACTTGCTTGATTCATTTCTATCTCTACTGAATATTACTCTTGGGTGCAGTGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAGGTGTTCAACCGTTAAGTGCACCTCATTACGCTTATTTTAATTTTTGTTATGTCTTTCGATTCTGGAACATGTTGGTTGCTCTTGAGAAATTAATGTTGATCCGTTGAACTGGTTCAATTCGTTCTGCAAATTCTTATTCGATTTGTTAAGTGGTGGTACTATATGGTAACAATAAGTCATAGGTAACTGGAAATCTCAACAAGGTAGAGGGGAAGCCCATTATCTGCCGAGTTTCGAACTGTGCCTTTTGTCCCTCAGGAATTTCTCGGTTATAAAAAATGTGACTGGAAATCACACAAATGTAACTTCAGTTTAGACGCAACAGTAGATATTGATCTCTTTAGTATTTTGTTAGGAAGAATTCAGTTGATCTATGTTTTATTCCTTGAATTTTTATTTAGAGCACTGCTCTGAAGAGAAAATGTTATTGCTTCTACAATTGAGCTAATTCTGTGGTTCAGTTTTTTTTCTTCTTGATGGTAAAATCAAATATGCTTTTCTAATGAAGAAGGGTCTGAACTTCTGACTGCTTTTCTTTCTTAAATCTCATTAATATAGTTAGAAAGTTCCGTCGGCAAAGTAACAATTGGTCAATATAAGCTCTTGCTTCAAATATTATTAGACCATACATCTGCTGTCTGTAATATGATTATGAGATTTAAAGCTTTTGAGTTGAAATGCAAACAAAAAGGTAACTTGGGAACATGATACAGGAAGGAAAGGGAGTTAGAAAAATCATCACTCTGAACTTTGTGGATATGAGTCAACCGTTATCTTGTTCTCGAGCTTTTCCTTACCCAGTTTTGAGTGGCTTAGAAAAGTTTTCTTTTCATTATATGCAGGAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAGGTTGTATACTACCAAAATACTTATTTTTAATTTTTCCTTGCATTCTCAATATTTTCATGTTTTTTACGTAATATATTTGTCCTTCTTACTATTAAAATAACCTTACTTCAGCAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAGGTATGACCTTCATCTCTTACTTGTTTCAAAATATTTGATTTCACAAAAAGTCAGTCCTATTATGGGATAAAAAGGAGATAAGTTTAGTAGATCGACTAATCAAGCTTCTCCGTAGCATGCATTGGTCCAGATCCATTACTTTATAAAATACGCTTCTTCACTTGCTAGATAATAGTGTCTCACCAGTATGTTGTTCCTCAATTTCTTCCTGAATTGTTTTTCTCTACAACAATGTTTTTTCTTTCCTATATTAAATTTTGCTACTTTGCAGTACCCTCACTTTATTAATTGAGAGGTATCTAGACATGACATGTCTGAGAGATCAGTTGGCTCGTGATGTATGAACTTCACTGTTTGCTATCATACGTGCAAATGTGGTTCTCTCCCAAGGAGAAAAAAGTAGATTGATTGCATTGTTATAGAGTCGTTTAAGGATATTGTTAAGTAACTTTTAGTCTGATTAAATGTGCTCTTTGACAGTGAAGAAAAATGATTTGGGTGCATGTTATAGAATTTTCTCGTCCTTAGTAATGGGTCACCCTTCAAGGGATATGTTTCTCCAGTACGTAATTCCCAATCATGAACGTCCGTATGATTTACACGGAATTAATTAGGTGCAATATGTTCCTACAAAAATGCTTACACACTGGAAAATGAAATTTGCTTGAAATAACTTCTTTCTGTTCTGTCTATTCAGTCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAGGTCAGTGTATTTGTTTTGGTGATAGCTCTACCTAAGAGAAGCTCCAAAGTTTTTACTAATGCGATGAGATTTTTAGCAATAGCTGTGTGTTCTTTGATATTATGAATGTAGGTTAAACTGTTAGTTAGGTATTTATGTACATAAATTTGACTTAGATGTAATATAGTGAAGGTTTACGAGCTACTCGGGGCTTCTTTCATCTTTCTCAATTCATATGGGTCACTGACTCTGATCCGTACCCACTCTTCAACTATCTCTCTGCTCCAATTATCCTCTTCAGCCTATTCTCTGTCTCTCTACTTCAAACCCACTATCTTCTAAACAAAAGGAAAAAGGTATAAAAGAAAAACAAGTAAAAAAGGAAAATCTTTCACCCACATGTAAACCTAGAATCTGTTTACTCATGCGGCATACAAGAAGGTGTGGGAGAATAGAGTGTCCCTCACGATTGTGCAAGAATTTCTAAAAGAGTTTTCAGTGTCATGGGTGACGCCATCGATAACCTTAAGGTTTTGGGTTCGATGCTTAGATTATATCAAAATATTAAAGCAAGAAATGTATGAATAGTGATTCTCGGCAGTTTGGTGTCTTACCTTCAGGATTACTCGGCAGTCTCAGGCTATGATTGATACCATTTTCTTACTAAGTGACTGAAAAAAGGAAACAAAAAAATATTTTTCTTACGGAGGGGTAAAAATGTTATCTGGTTCACTTGCGATGAAATGCATCTTTTGCTTTCTATAGACCCTATGTCTCCTCAAGAGATAGCATATACGTATTTTGGCCTCTTGGTATTTTCCTGTAATCAAGGATCTCTTAGTTGGATAACTCCTATTATTAAAACTGACGTTGATTCTGGCTTTGGCGTCTCTCCCAGGAATTGGTTAGATTGGATGAAAAACATAATGTTTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCGTGA</genome_strand>
        <mrna_strand>TTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAG.....................................................................TGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAG...............................................................................................................CAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTTAGATTGGATGAAAAACATAATGTTTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736262" ref_strand="+" ref_description="SGN-E736262 [LC04DH03]">
      <seq>cctattactagccaggcagttgttcctgacgtagtaacaagtccatttgtggagcaatggcaagggagggctgcatcttttgtacgttcaaacgaccagctggattctgataaaaataggaagtgggacacatcaggtctcaccggaatttccctaaagcttgttgaaggtgataagaatgctcgaaactggtggcggaagcttgaggttgttcgagaactagttgttgaaaacatggatagttcacatcgcttggaggctctcacgtatgcagctgtctatctaaagtggataaatacagggcaaattccttgccttgaagatgggggtcaccatcgaccaaatagacatgcagagatttccaggcttatatttcgtgaagtagaaaaagtcttgagcaggaaagacactacacttcaggaaatacttgtgatccgcaagatgcaaccgtgcttgccttcttttaaagcagaattcactgcatccgttcctttaacgagaatcagggacatcgctcataggaatgatattccgcatgatcttaagcaagaaatcaaacatactatacaaaacaagctccatagaaatgctggccctgaagatctagtatccacagaagcaatgctcgaaagaattaccaaacaacctggacaatacagtgaggcatttgtagagcaattcaagattttccacaatgaactaaaagatttcttcaatgctgggagtcttgatgaacagctggaatctataagagaatcactcgacggaagtagcttgacaatgctttcatcattcttggagtccaaaaaggaattggttagattggatgaaaaacataatgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="102141" stop="96720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101842" g_stop="101642" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101641" i_stop="100260" i_length="1382">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100259" g_stop="100173" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="288" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100172" i_stop="100104" i_length="69">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100103" g_stop="99972" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="420" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99971" i_stop="99130" i_length="842">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99129" g_stop="99004" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="546" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99003" i_stop="98893" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98892" g_stop="98714" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="725" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98713" i_stop="98017" i_length="697">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98016" g_stop="97932" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="810" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97931" i_stop="97055" i_length="877">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97054" g_stop="97020" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="845" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E736262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101842" e_stop="101642"/>
          <exon e_start="100259" e_stop="100173"/>
          <exon e_start="100103" e_stop="99972"/>
          <exon e_start="99129" e_stop="99004"/>
          <exon e_start="98892" e_stop="98714"/>
          <exon e_start="98016" e_stop="97932"/>
          <exon e_start="97054" e_stop="97020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTACTAGCCAGGCAGTTGTTCCTGACGTAGTAACAAGTCCATTTGTGGAGCAATGGCAAGGGAGGGCTGCATCTTTTGTACGTTCAAACGACCAGCTGGATTCTGATAAAAATAGGAAGTGGGACACATCAGGTCTCACCGGAATTTCCCTAAAGCTTGTTGAAGGTGATAAGAATGCTCGAAACTGGTGGCGGAAGGTGAGAAGATAGATTAGATCTCGTCTTGATGGCATGTTTGCATTCTGGAAATTGACTGTGCCATAAAAGAATTACTTCTGTGCAAGATAGCATCACAGGGCATCTCTGCAATTTATTTTCTATAATTCATCAATCTGCATTGTTGGTATCCTCACTATTGCAAGAGTGTCTTCTTTTAAGCTCACTCATCACTTGTGTGTGAAGTCCTCCAAGTGTGTCTCCTTTTAGCTATGGGGATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGCTAACACTCATGATGATTAATGAGTGGAGAAACGGTATGAAGGAAGAGATGGAATGAGCAAAGAGGGAAGAGAATAACTTTCCTTGCGTTCTGTGTAAGATCAAGTGTGGCCACAGAGGAAAGTTGGAGAGAGATGTTTCCAGGAGATTGAGAGATATTTTTTGTAGAGCGAGCACTTGGTTCTTATGCAAATTGACTGATGAACTACAATATTCTCTTCTTTCAGTTTTATTTGTTGCTAAGTAGTCCATGGAGAAATTGATTGCTCTCCATTTGGTGGTCTACTATACTACAAGTTGCTTTTCATCCATCAGATTAACAGGCCAAAACATATCTTGAGATAGCTATGTGAAAGTGCATTTTCTTGTGCTTAGATGAAGCTTGAATTTGTTGTTCAGCTATATCAATAAGGATGGGAGAGCCGTTACTTCATATTAGATTTAGATTATTGTTATCCTTTGCCTTATTTAAGATGTTTTTTTAATGCCAGTACAATGATATATCTTGAGATAGTTACATAGTGGTGCCTGTTAGTGTGGTTTGGCGAAGTTGTTTCTCATTGATACCAATAAGGATGATAAAACTATCATTTACTGTTAGATTTAGGTTATTGTTACTGGTTCTCATTAGAGATACAGTATGGAATAGCAGCGGCTCAAACAGAGAGACAGAGGAAGCATGAGCTTTTAAAAGCTAAAACTTCCTAGCATAATGCTAATGAGTTGGCTGTATGTGAACTCATAAGTCATAGCAAAACTATTGGCGTCTATTTGAAATATTCCCCTTTTCTCATTCTTTTAACTTTACTAATTTGATTATATTTAAAGATAGTTTTAGTTCTTCTCAGTTGGAGATAACTAAATATACTTTGGAACAACGGTAGATTGTGTGATTAAAAAATAGCTGGTTGAAGAGAGGTAACACCAGCACTAAAGCATGAGAAGTGATGTTATTCTCTATTAATTGCAATTCTTGTGGTTTGTTACTTTTCCATTTCGTGAAAAGGCTCTAACTTCAGAATTGTCTACATCTCTTTATAATTAACTGTCTCCTTTTTTTTTTACTGGTTTTAGCTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAGGTCTCGTATATTTTTAGATGACTTGCTTGATTCATTTCTATCTCTACTGAATATTACTCTTGGGTGCAGTGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAGGTGTTCAACCGTTAAGTGCACCTCATTACGCTTATTTTAATTTTTGTTATGTCTTTCGATTCTGGAACATGTTGGTTGCTCTTGAGAAATTAATGTTGATCCGTTGAACTGGTTCAATTCGTTCTGCAAATTCTTATTCGATTTGTTAAGTGGTGGTACTATATGGTAACAATAAGTCATAGGTAACTGGAAATCTCAACAAGGTAGAGGGGAAGCCCATTATCTGCCGAGTTTCGAACTGTGCCTTTTGTCCCTCAGGAATTTCTCGGTTATAAAAAATGTGACTGGAAATCACACAAATGTAACTTCAGTTTAGACGCAACAGTAGATATTGATCTCTTTAGTATTTTGTTAGGAAGAATTCAGTTGATCTATGTTTTATTCCTTGAATTTTTATTTAGAGCACTGCTCTGAAGAGAAAATGTTATTGCTTCTACAATTGAGCTAATTCTGTGGTTCAGTTTTTTTTCTTCTTGATGGTAAAATCAAATATGCTTTTCTAATGAAGAAGGGTCTGAACTTCTGACTGCTTTTCTTTCTTAAATCTCATTAATATAGTTAGAAAGTTCCGTCGGCAAAGTAACAATTGGTCAATATAAGCTCTTGCTTCAAATATTATTAGACCATACATCTGCTGTCTGTAATATGATTATGAGATTTAAAGCTTTTGAGTTGAAATGCAAACAAAAAGGTAACTTGGGAACATGATACAGGAAGGAAAGGGAGTTAGAAAAATCATCACTCTGAACTTTGTGGATATGAGTCAACCGTTATCTTGTTCTCGAGCTTTTCCTTACCCAGTTTTGAGTGGCTTAGAAAAGTTTTCTTTTCATTATATGCAGGAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAGGTTGTATACTACCAAAATACTTATTTTTAATTTTTCCTTGCATTCTCAATATTTTCATGTTTTTTACGTAATATATTTGTCCTTCTTACTATTAAAATAACCTTACTTCAGCAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAGGTATGACCTTCATCTCTTACTTGTTTCAAAATATTTGATTTCACAAAAAGTCAGTCCTATTATGGGATAAAAAGGAGATAAGTTTAGTAGATCGACTAATCAAGCTTCTCCGTAGCATGCATTGGTCCAGATCCATTACTTTATAAAATACGCTTCTTCACTTGCTAGATAATAGTGTCTCACCAGTATGTTGTTCCTCAATTTCTTCCTGAATTGTTTTTCTCTACAACAATGTTTTTTCTTTCCTATATTAAATTTTGCTACTTTGCAGTACCCTCACTTTATTAATTGAGAGGTATCTAGACATGACATGTCTGAGAGATCAGTTGGCTCGTGATGTATGAACTTCACTGTTTGCTATCATACGTGCAAATGTGGTTCTCTCCCAAGGAGAAAAAAGTAGATTGATTGCATTGTTATAGAGTCGTTTAAGGATATTGTTAAGTAACTTTTAGTCTGATTAAATGTGCTCTTTGACAGTGAAGAAAAATGATTTGGGTGCATGTTATAGAATTTTCTCGTCCTTAGTAATGGGTCACCCTTCAAGGGATATGTTTCTCCAGTACGTAATTCCCAATCATGAACGTCCGTATGATTTACACGGAATTAATTAGGTGCAATATGTTCCTACAAAAATGCTTACACACTGGAAAATGAAATTTGCTTGAAATAACTTCTTTCTGTTCTGTCTATTCAGTCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAGGTCAGTGTATTTGTTTTGGTGATAGCTCTACCTAAGAGAAGCTCCAAAGTTTTTACTAATGCGATGAGATTTTTAGCAATAGCTGTGTGTTCTTTGATATTATGAATGTAGGTTAAACTGTTAGTTAGGTATTTATGTACATAAATTTGACTTAGATGTAATATAGTGAAGGTTTACGAGCTACTCGGGGCTTCTTTCATCTTTCTCAATTCATATGGGTCACTGACTCTGATCCGTACCCACTCTTCAACTATCTCTCTGCTCCAATTATCCTCTTCAGCCTATTCTCTGTCTCTCTACTTCAAACCCACTATCTTCTAAACAAAAGGAAAAAGGTATAAAAGAAAAACAAGTAAAAAAGGAAAATCTTTCACCCACATGTAAACCTAGAATCTGTTTACTCATGCGGCATACAAGAAGGTGTGGGAGAATAGAGTGTCCCTCACGATTGTGCAAGAATTTCTAAAAGAGTTTTCAGTGTCATGGGTGACGCCATCGATAACCTTAAGGTTTTGGGTTCGATGCTTAGATTATATCAAAATATTAAAGCAAGAAATGTATGAATAGTGATTCTCGGCAGTTTGGTGTCTTACCTTCAGGATTACTCGGCAGTCTCAGGCTATGATTGATACCATTTTCTTACTAAGTGACTGAAAAAAGGAAACAAAAAAATATTTTTCTTACGGAGGGGTAAAAATGTTATCTGGTTCACTTGCGATGAAATGCATCTTTTGCTTTCTATAGACCCTATGTCTCCTCAAGAGATAGCATATACGTATTTTGGCCTCTTGGTATTTTCCTGTAATCAAGGATCTCTTAGTTGGATAACTCCTATTATTAAAACTGACGTTGATTCTGGCTTTGGCGTCTCTCCCAGGAATTGGTTAGATTGGATGAAAAACATAATGTTTC</genome_strand>
        <mrna_strand>CCTATTACTAGCCAGGCAGTTGTTCCTGACGTAGTAACAAGTCCATTTGTGGAGCAATGGCAAGGGAGGGCTGCATCTTTTGTACGTTCAAACGACCAGCTGGATTCTGATAAAAATAGGAAGTGGGACACATCAGGTCTCACCGGAATTTCCCTAAAGCTTGTTGAAGGTGATAAGAATGCTCGAAACTGGTGGCGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAG.....................................................................TGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAG...............................................................................................................CAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTTAGATTGGATGAAAAACATAATGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737921" ref_strand="+" ref_description="SGN-E737921 [LC11CH04]">
      <seq>ggagggctgcatcttttgtacgttcaaacgaccagcctggattctgataaaaataggaagtgggacacatcagagtctcaccggaatttccctaaagcttgttgaaggtgataagaatgctcgaaactggtggcggaagcttgaggttgttcgagaactagttgttgaaaacatggatagttcacatcgcttggaggctctcacgtatgcaactgtctatctaaagtggataaatacagggcaaattccttgccttgaagatgggggtcaccatcgaccaaatagacatgcggagatttccaggcttatatttcgtgaaatagaaaaagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="102078" stop="99696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101778" g_stop="101642" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101641" i_stop="100260" i_length="1382">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100259" g_stop="100173" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100172" i_stop="100104" i_length="69">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100103" g_stop="99996" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="334" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E737921" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101778" e_stop="101642"/>
          <exon e_start="100259" e_stop="100173"/>
          <exon e_start="100103" e_stop="99996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGCTGCATCTTTTGTACGTTCAAACGACCAG-CTGGATTCTGATAAAAATAGGAAGTGGGACACATCAG-GTCTCACCGGAATTTCCCTAAAGCTTGTTGAAGGTGATAAGAATGCTCGAAACTGGTGGCGGAAGGTGAGAAGATAGATTAGATCTCGTCTTGATGGCATGTTTGCATTCTGGAAATTGACTGTGCCATAAAAGAATTACTTCTGTGCAAGATAGCATCACAGGGCATCTCTGCAATTTATTTTCTATAATTCATCAATCTGCATTGTTGGTATCCTCACTATTGCAAGAGTGTCTTCTTTTAAGCTCACTCATCACTTGTGTGTGAAGTCCTCCAAGTGTGTCTCCTTTTAGCTATGGGGATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGCTAACACTCATGATGATTAATGAGTGGAGAAACGGTATGAAGGAAGAGATGGAATGAGCAAAGAGGGAAGAGAATAACTTTCCTTGCGTTCTGTGTAAGATCAAGTGTGGCCACAGAGGAAAGTTGGAGAGAGATGTTTCCAGGAGATTGAGAGATATTTTTTGTAGAGCGAGCACTTGGTTCTTATGCAAATTGACTGATGAACTACAATATTCTCTTCTTTCAGTTTTATTTGTTGCTAAGTAGTCCATGGAGAAATTGATTGCTCTCCATTTGGTGGTCTACTATACTACAAGTTGCTTTTCATCCATCAGATTAACAGGCCAAAACATATCTTGAGATAGCTATGTGAAAGTGCATTTTCTTGTGCTTAGATGAAGCTTGAATTTGTTGTTCAGCTATATCAATAAGGATGGGAGAGCCGTTACTTCATATTAGATTTAGATTATTGTTATCCTTTGCCTTATTTAAGATGTTTTTTTAATGCCAGTACAATGATATATCTTGAGATAGTTACATAGTGGTGCCTGTTAGTGTGGTTTGGCGAAGTTGTTTCTCATTGATACCAATAAGGATGATAAAACTATCATTTACTGTTAGATTTAGGTTATTGTTACTGGTTCTCATTAGAGATACAGTATGGAATAGCAGCGGCTCAAACAGAGAGACAGAGGAAGCATGAGCTTTTAAAAGCTAAAACTTCCTAGCATAATGCTAATGAGTTGGCTGTATGTGAACTCATAAGTCATAGCAAAACTATTGGCGTCTATTTGAAATATTCCCCTTTTCTCATTCTTTTAACTTTACTAATTTGATTATATTTAAAGATAGTTTTAGTTCTTCTCAGTTGGAGATAACTAAATATACTTTGGAACAACGGTAGATTGTGTGATTAAAAAATAGCTGGTTGAAGAGAGGTAACACCAGCACTAAAGCATGAGAAGTGATGTTATTCTCTATTAATTGCAATTCTTGTGGTTTGTTACTTTTCCATTTCGTGAAAAGGCTCTAACTTCAGAATTGTCTACATCTCTTTATAATTAACTGTCTCCTTTTTTTTTTACTGGTTTTAGCTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAGGTCTCGTATATTTTTAGATGACTTGCTTGATTCATTTCTATCTCTACTGAATATTACTCTTGGGTGCAGTGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTG</genome_strand>
        <mrna_strand>GGAGGGCTGCATCTTTTGTACGTTCAAACGACCAGCCTGGATTCTGATAAAAATAGGAAGTGGGACACATCAGAGTCTCACCGGAATTTCCCTAAAGCTTGTTGAAGGTGATAAGAATGCTCGAAACTGGTGGCGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAACTGTCTATCTAAAG.....................................................................TGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCGGAGATTTCCAGGCTTATATTTCGTGAAATAGAAAAAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390928" ref_strand="+" ref_description="SGN-E390928 [TUS-46-F12](-)">
      <seq>taatcacatcaagtccatgttcatggacntatttggtgcgggtactgatacaaccacaagcacattggaatgggcaatggcagaattgcttaaacaacctgagataataaaaaaagctcaagttgaacttgctgaaatcattgggaaaggaaaattaatagaagaagctgatgtttttcgactcccttacttgcaatgcattatcaaagaaacattaagattgcatccaccggttccgctcttagttccgcgcaaagtagaccaagatgttgaattgtgtgactacatcatcccaaagggctcacaggtactagttaatgtgtgggcgattggtcgagattttactttttggaaggatcctttagagtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgaggatgattccagtaatgttgggctcactgttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="108552" stop="106903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108252" g_stop="108228" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108227" i_stop="108118" i_length="110">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108117" g_stop="107836" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="307" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107835" i_stop="107615" i_length="221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107614" g_stop="107194" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="728" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E390928" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108252" e_stop="108228"/>
          <exon e_start="108117" e_stop="107836"/>
          <exon e_start="107614" e_stop="107194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACATCAAGTCCATGTTCATGGTTCGTATTATTTATCATGAGCTTATGTTATATTATTATAATTTATGAATTTTTTTTATTATTATTGCAATATATGGTTATTTATTTTGATGTACAAATTAATGTTATAGGACCTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAGGTATGTATGTGTGGTAAATAAAGTTATTTGACGAAAATAATATGAATAGTGTACTAAAGAGGACCCAAAAGAAAATTTATAATTATTTTTTAAAAAAATAAAATAAATTAAAATTTGGTTAGAGTTGGATGGATTAGGTTTGACCTGTTGTTTAGTACTGAATCTTATTGAGCTCTTTTAACCAATCCAAACATAAACTAACTCATGTAATTTGAGTCCAGGTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</genome_strand>
        <mrna_strand>TAATCACATCAAGTCCATGTTCATG..............................................................................................................GACNTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG.............................................................................................................................................................................................................................GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390927" ref_strand="+" ref_description="SGN-E390927 [TUS-46-F10](-)">
      <seq>gataataaaaaaagctcaagttgaactgctgnaaatcatcgggaaaggaaaattaatagaagaagctgatgttnttcgactcccttacttgcaatgcattatcaaagaaacattaagattgcatccaccggttccgctcttagttccgcgcaaagtagaccaagatgttgaattgtgtgactacatcatcccaaagggctcacaggtactagttaatgtgtgggcgattggtcgagattttactttttggaaggatcctttagagtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgaggatgattccagtaatgttgggctcactgttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="108340" stop="106903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108040" g_stop="107836" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107835" i_stop="107615" i_length="221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107614" g_stop="107194" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="626" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E390927" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108040" e_stop="107836"/>
          <exon e_start="107614" e_stop="107194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAAAAAAAGCTCAAGTTGAACTTGCTG-AAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAGGTATGTATGTGTGGTAAATAAAGTTATTTGACGAAAATAATATGAATAGTGTACTAAAGAGGACCCAAAAGAAAATTTATAATTATTTTTTAAAAAAATAAAATAAATTAAAATTTGGTTAGAGTTGGATGGATTAGGTTTGACCTGTTGTTTAGTACTGAATCTTATTGAGCTCTTTTAACCAATCCAAACATAAACTAACTCATGTAATTTGAGTCCAGGTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</genome_strand>
        <mrna_strand>GATAATAAAAAAAGCTCAAGTTGAAC-TGCTGNAAATCATCGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTNTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG.............................................................................................................................................................................................................................GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695168" ref_strand="+" ref_description="SGN-E695168 [LH_Ea05N06](-)">
      <seq>gtttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgagaatgattccattaatgttgggctcactcttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttagatgtatttgatatttacgctgaagcaagtattttaataaagataatcatatatatatatatattgcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="107855" stop="106886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107555" g_stop="107202" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="387"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E695168" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107555" e_stop="107202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</genome_strand>
        <mrna_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGAATGATTCCATTAATGTTGGGCTCACTCTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTAGATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATAAAGATAATCATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691328" ref_strand="+" ref_description="SGN-E691328 [LH_Ea05N06]">
      <seq>ttttaaacctgagagatttttgaatttggatctggacatgcgaggacaagattttgagttgattccatttggtgctggacgaagaatatgccctgggttgccactagcattgagaatgattccattaatgttgggctcactcttgaattcattcaattggaaacttgatgcaggtattgagccacaagaattagacatggaggagaagtttggtattaccttagccaaagctcatcctttgcgagctatcccctctcctctttgatcgatgttgcattgcctagtcgataaatatttatatgtatttgatatttacgctgaagcaagtattttaatctaaataatcatatatatatatatattgcctataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="107854" stop="106886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107555" g_stop="107202" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="382"/>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E691328" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107555" e_stop="107202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</genome_strand>
        <mrna_strand>TTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGAATGATTCCATTAATGTTGGGCTCACTCTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335463" ref_strand="+" ref_description="SGN-E335463 [cTOE-2-C13]">
      <seq>acaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaaaatcctcaagagattgatcataatcacatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109193" stop="107939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108893" g_stop="108239" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E335463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108893" e_stop="108239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGT</genome_strand>
        <mrna_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278924" ref_strand="+" ref_description="SGN-E278924 [cLER-2-C12]">
      <seq>taaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109149" stop="107973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108849" g_stop="108273" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E278924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108849" e_stop="108273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</genome_strand>
        <mrna_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301544" ref_strand="+" ref_description="SGN-E301544 [cLEW-23-O2]">
      <seq>ttattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109294" stop="108089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108994" g_stop="108389" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E301544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108994" e_stop="108389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</genome_strand>
        <mrna_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291872" ref_strand="+" ref_description="SGN-E291872 [cLET-7-N15]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109346" stop="108126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109046" g_stop="108426" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E291872" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109046" e_stop="108426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302969" ref_strand="+" ref_description="SGN-E302969 [cLEW-26-D4]">
      <seq>aacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109191" stop="108156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108891" g_stop="108456" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E302969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108891" e_stop="108456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</genome_strand>
        <mrna_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390674" ref_strand="+" ref_description="SGN-E390674 [TUS-46-F12]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109348" stop="108175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109048" g_stop="108475" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E390674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109048" e_stop="108475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291937" ref_strand="+" ref_description="SGN-E291937 [cLET-7-M17]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttagggnnntnncccnaaaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctattgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgcctgtcctcaatggcaaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109346" stop="108180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109046" g_stop="108480" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E291937" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109046" e_stop="108480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTA-GG---T----C---AAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGGNNNTNNCCCNAAAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTATTGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGCCTGTCCTCAATGGCAAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390673" ref_strand="+" ref_description="SGN-E390673 [TUS-46-F10]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109348" stop="108219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109048" g_stop="108519" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E390673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109048" e_stop="108519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302472" ref_strand="+" ref_description="SGN-E302472 [cLEW-27-J2]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagccccaccaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgccttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaaccaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109348" stop="108226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109048" g_stop="108526" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E302472" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109048" e_stop="108526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAG-CGCA-CAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACG-CTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAA-CAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCCCCACCAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACCAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300235" ref_strand="+" ref_description="SGN-E300235 [cLEW-17-B11]">
      <seq>ttagtgttggctaatatcataccaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109373" stop="108227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109073" g_stop="108527" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E300235" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109073" e_stop="108527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTT</genome_strand>
        <mrna_strand>TTAGTGTTGGCTAATATCATACCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305501" ref_strand="+" ref_description="SGN-E305501 [cLEX-15-J4]">
      <seq>gattactattcacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttctaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcgacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109403" stop="108251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109103" g_stop="108551" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E305501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109103" e_stop="108551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</genome_strand>
        <mrna_strand>GATTACTATTCACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCTAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCGACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294327" ref_strand="+" ref_description="SGN-E294327 [cLET-14-J22]">
      <seq>aatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109347" stop="108299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109047" g_stop="108599" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E294327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109047" e_stop="108599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</genome_strand>
        <mrna_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294328" ref_strand="+" ref_description="SGN-E294328 [cLET-14-J22](-)">
      <seq>gacctatatccaaagcttcaccttgttgactacatttgtcacaataatcaatcaattgtttcaccttttgagaccttagatgttgatttgcatcaagcttattggaagataagaggttagtgttcaatattcttcgaagcgttcgccattgaggacaaacaggaagccatgccacagaaaatttgtaatggttgtgcgcttgaagagcattaggagcaaatctagatgaaaaggcttgatcttgagttttaaggacttgttttgcaatggttgatgaggaaatgactattgttgttatttgacctaactttaaactcataattggaccataattttttgcaagattggctagtgatatatgaggttttgcacctaacaactgaaggtttccaataattggccatggtgatggacctggtggaagttttttgcttcctttgctacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="+" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="108299" stop="109347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108599" g_stop="109047" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="+" ref_id="SGN-E294328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108599" e_stop="109047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</genome_strand>
        <mrna_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310265" ref_strand="+" ref_description="SGN-E310265 [cTOA-1-A4]">
      <seq>ctatggattactatacacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtatcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="109408" stop="108411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109108" g_stop="108711" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E310265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109108" e_stop="108711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</genome_strand>
        <mrna_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTATCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309339" ref_strand="+" ref_description="SGN-E309339 [cLEY-22-A19]">
      <seq>atgtgtgggaaattaatagagattctactttttgggaggatcccttaatgtttaagcctgagaggttttggcattcaaatttatacgtgcgaggacaagattttgaactgatcccatttggtgcgggtagaagaatgtgccctgccttgccacttgcattgcgaatgattccagtcatgttgggctcactcttgaattccttcaattggaaactcgaggcaggcattagaccagaagacctagacatggaggaaaaatttggtttggctttaatcaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0109D11-ELHms/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0109D11.1" temp_strand="-" temp_description="C09HBa0109D11.1  EF647603.1 htgs_phase:3 submitted_to_sgn_as:Contig1 upload_account_name:spain">
        <position start="113700" stop="112818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113400" g_stop="113118" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0109D11.1" gen_strand="-" ref_id="SGN-E309339" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0109D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113400" e_stop="113118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</genome_strand>
        <mrna_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAATGTTTAAGCCTGAGAGGTTTTGGCATTCAAATTTATACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAAAAATTTGGTTTGGCTTTAATCAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>124</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1146" PGL_stop="3688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1146" e_stop="1369"/>
            <exon e_start="1774" e_stop="1823"/>
            <exon e_start="2058" e_stop="2125"/>
            <exon e_start="2522" e_stop="2584"/>
            <exon e_start="2777" e_stop="2880"/>
            <exon e_start="3415" e_stop="3688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1146" e_stop="1369" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1370" i_stop="1773" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1774" e_stop="1823" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.989">
            <gDNA_intron_boundary i_start="1824" i_stop="2057" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2058" e_stop="2125" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.947">
            <gDNA_intron_boundary i_start="2126" i_stop="2521" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2522" e_stop="2584" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2585" i_stop="2776" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2777" e_stop="2880" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2881" i_stop="3414" i_length="534"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="3415" e_stop="3688" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1146" stop="1369"/>
              <exon start="1774" stop="1823"/>
              <exon start="2058" stop="2125"/>
              <exon start="2522" stop="2584"/>
              <exon start="2777" stop="2880"/>
              <exon start="3415" stop="3688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG : GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG : TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTG</gDNA_template>
            <first_frame> Y  M  R  A  I  S  E  L  F  L  V  K  I  F  P  F  V  R  N  K  K  V  S  R  K  P  I  F  F  P  I  R  N  I  N  M  S  E  S  N  Q  Y  D  S  C  F  D  R  P  R  L  V  I  K  K  V  L  A  K  P  Q  S  E  G  N  G  A  V  V  R  R  S  I  G  R :   H  E  L  R  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  A  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  N  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  I  H  S  E  M  P  A  G  E  G  S  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  K  E  D  I  P  R  A  E  N  D  G  V  K  V  K  V  I  A  G  E  A  M  G  V  Q  S  P  V  Y  T  Q  T  P  T  M  Y  L  D  F  T  L  Q  P  T  A  Y  Y  H  Q  A  I  P  E  S  W  N  A  F  V  Y  I  V  E  G  E  G  V  F  G  I  P  S  S  G  P  V  S  A  H  H  C  L </first_frame>
            <second_frame>  I  *  E  L  F  L  N  Y  F  *  *  K  S  S  H  L  L  E  I  K  K  F  Q  E  S  L  F  F  F  L  L  E  I  L  I  C  L  N  Q  I  N  M  I  L  V  L  I  D  Q  D  W  L  L  R  K  F  W  L  N  L  K  V  K  G  M  E  L  L  L  E  E  A  L  E   : G  M  N  *  G  I  L  I  L  S  *  C  W  M  N  F  Q  :  F  L  L  L  L  V  F  L  I  I  H  T  E  V  L  R  Q  *  L  T  C  Y  R :   E  L  L  L  I  K  I  L  L  V  T  R  A  Q  L  I  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  Q  E  K  A  V  K  R  G  C  N  F  G  *  I  S  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  *  K  K  T  Y  Q  E  Q  R  M  M  V  L  K  *  K  L  *  Q  V  K  Q  W  E  S  N  P  R  F  T  H  K  R  L  Q  C  T  S  I  S  P  Y  N  Q  Q  L  T  I  I  K  P  S  L  N  L  G  T  P  S  Y  I  *  L  K  E  K  V  S  S  E  F  R  V  Q  V  L  Y  Q  L  T  I  A   </second_frame>
            <third_frame>   Y  E  S  Y  F  *  T  I  F  S  E  N  L  P  I  C  *  K  *  K  S  F  K  K  A  Y  F  F  S  Y  *  K  Y  *  Y  V  *  I  K  S  I  *  F  L  F  *  *  T  K  I  G  Y  *  E  S  F  G  *  T  S  K  *  R  E  W  S  C  C  *  K  K  H  W  K  :  A  *  I  E  E  S  *  S  F  P  N  V  G  *  I  F  S :   F  C  S  C  W  F  S  *  S  S  T  Q  R  F  *  D  S  N  L  H  A  T   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  H  N  *  Y  W  *  C  A   : V  D  D  S  R  K  R  Y  N  S  F  R  N  A  C  R  R  R  Q  S  K  G  V  A  T  L  D  K  S  L  F  *  G  Q  N  :  D  *  A  K  V  S  R  T  A  E  R  R  H  T  K  S  R  E  *  W  C  *  S  K  S  Y  S  R  *  S  N  G  S  P  I  P  G  L  H  T  N  A  Y  N  V  P  R  F  H  P  T  T  N  S  L  L  S  S  S  H  P  *  I  L  E  R  L  R  I  Y  S  *  R  R  R  C  L  R  N  S  E  F  R  S  C  I  S  S  P  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1146" stop="1369"/>
                    <exon start="1774" stop="1823"/>
                    <exon start="2058" stop="2125"/>
                    <exon start="2522" stop="2584"/>
                    <exon start="2777" stop="2880"/>
                    <exon start="3415" stop="3688"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMRAISELFLVKIFPFVRNKKVSRKPIFFPIRNINMSESNQYDSCFDRPRLVIKKVLAKPQSEGNGAVVRRSIGRHELRNLDPFLMLDEFSVSAPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTINTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLSSKDKMIEPRYQELLKEDIPRAENDGVKVKVIAGEAMGVQSPVYTQTPTMYLDFTLQPTAYYHQAIPESWNAFVYIVEGEGVFGIPSSGPVSAHHCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8806" PGL_stop="5317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8806" e_stop="8387"/>
            <exon e_start="5787" e_stop="5317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8806" e_stop="8387" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="8386" i_stop="5788" i_length="2599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5787" e_stop="5317" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8806" stop="8513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8802" stop="8387"/>
              <exon start="5787" stop="5709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8802" stop="8465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8801" stop="8387"/>
              <exon start="5787" stop="5665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8774" stop="8587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8770" stop="8387"/>
              <exon start="5787" stop="5500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8761" stop="8387"/>
              <exon start="5787" stop="5502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8761" stop="8387"/>
              <exon start="5787" stop="5728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8757" stop="8387"/>
              <exon start="5787" stop="5317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA : CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAA</gDNA_template>
            <first_frame> T  P  S  P  L  S  L  S  L  D  H  Q  F  A  F  F  L  S  L  N  L  K  K  F  Q  F  F  S  K  W  T  L  Q  M  M  R  V  R  S  I  F  S  R  L  *  S  L  V  I  L  Q  *  V  N  L  I  C  L  H  V  M  Q  E  M  S  L  I  C  I  Q  K  Q  L  L  E  L  S  F  R  P  K  L  L  K  L  M  E  K  K  L  K  L  R  F  G  I  L  L  D  K  K  G  L  E  L  *  L  L  L  I  I  V  V  L  L  V  L  L  L  F  M  I  F  Q  E  G  Q  L  L  I  V  S  L  V  G  L  M  N  S  K  :  L  I  R  I  Q  R  L  Q  G  Y  W  W  E  T  N  V  T  W  R  I  *  E  L  *  A  *  K  K  A  K  A  W  Q  N  Q  K  G  C  S  S  W  R  H  L  P  S  I  Q  Q  T  *  T  R  L  S  R  L  *  F  E  R  S  I  I  V  L  A  E  R  F  *  I  P  I  L  I  K  P  N  Y  L  S  T  E  S  T  W  S  T  M  V  P  M  D  R  N  K  S  R  A  T  L  V  V  L  G  D  *  C  Y  V  S  *  F  P  L  S  F  T  R  M  V  H  *  I  I  F  A  G  H  T  V  Y  *  F  V  N  G  *  S  T  F  V  M  V  R  N  L  I  F  I  F  Y  M  A  A  E </first_frame>
            <second_frame>  P  L  P  P  S  L  S  L  *  I  T  S  L  H  S  F  S  L  *  T  S  K  S  F  N  F  S  A  N  G  L  F  R  *  *  G  *  G  V  S  F  Q  D  C  N  H  W  *  F  C  S  R  *  I  *  F  A  Y  T  L  C  K  K  *  V  *  F  A  F  K  S  N  Y  W  S  *  V  S  D  P  N  S  *  N  *  W  K  R  S  *  S  S  D  L  G  Y  C  W  T  R  K  V  *  S  C  D  F  C  L  L  S  W  C  F  W  C  S  C  C  L  *  Y  F  K  K  D  N  F  *  *  Y  P  S  L  A  *  *  T  Q  N :   S  F  G  Y  N  G  C  K  D  T  G  G  K  Q  M  *  L  G  E  Y  K  S  C  E  R  R  R  R  Q  K  P  G  R  I  R  R  D  V  L  H  G  D  I  C  P  R  F  N  K  R  E  Q  G  F  R  D  C  D  S  R  D  L  *  *  C  *  Q  K  G  F  E  F  R  F  L  *  S  R  I  I  C  Q  Q  S  Q  P  G  Q  R  W  Y  R  W  I  E  T  K  A  G  L  L  L  L  F  *  V  I  N  V  M  F  L  D  S  P  *  V  L  Q  E  W  F  I  K  L  F  L  L  V  I  L  F  I  D  L  L  M  D  K  V  L  L  *  W  S  G  T  *  Y  L  Y  S  I  W  Q  L   </second_frame>
            <third_frame>   P  F  P  P  L  S  L  S  R  S  P  V  C  I  L  S  L  S  K  P  Q  K  V  S  I  F  Q  Q  M  D  S  S  D  D  E  G  E  E  Y  L  F  K  I  V  I  I  G  D  S  A  V  G  K  S  N  L  L  T  R  Y  A  R  N  E  F  N  L  H  S  K  A  T  I  G  V  E  F  Q  T  Q  T  L  E  I  D  G  K  E  V  K  A  Q  I  W  D  T  A  G  Q  E  R  F  R  A  V  T  S  A  Y  Y  R  G  A  F  G  A  L  V  V  Y  D  I  S  R  R  T  T  F  D  S  I  P  R  W  L  D  E  L  K   : T  H  S  D  T  T  V  A  R  I  L  V  G  N  K  C  D  L  E  N  I  R  A  V  S  V  E  E  G  K  S  L  A  E  S  E  G  M  F  F  M  E  T  S  A  L  D  S  T  N  V  N  K  A  F  E  I  V  I  R  E  I  Y  N  S  V  S  R  K  V  L  N  S  D  S  Y  K  A  E  L  S  V  N  R  V  N  L  V  N  D  G  T  D  G  S  K  Q  K  Q  G  Y  S  C  C  S  R  *  L  M  L  C  F  L  I  P  L  K  F  Y  K  N  G  S  L  N  Y  F  C  W  S  Y  C  L  L  I  C  *  W  I  K  Y  F  C  N  G  Q  E  L  N  I  Y  I  L  Y  G  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8804" stop="8387"/>
                    <exon start="5787" stop="5468"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPPLSLSRSPVCILSLSKPQKVSIFQQMDSSDDEGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNLHSKATIGVEFQTQTLEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRTTFDSIPRWLDELKTHSDTTVARILVGNKCDLENIRAVSVEEGKSLAESEGMFFMETSALDSTNVNKAFEIVIREIYNSVSRKVLNSDSYKAELSVNRVNLVNDGTDGSKQKQGYSCCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12057" PGL_stop="9971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12057" e_stop="11924"/>
            <exon e_start="11729" e_stop="11680"/>
            <exon e_start="11589" e_stop="11522"/>
            <exon e_start="11337" e_stop="11275"/>
            <exon e_start="11069" e_stop="10966"/>
            <exon e_start="10656" e_stop="9971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12057" e_stop="11924" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11923" i_stop="11730" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11729" e_stop="11680" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11679" i_stop="11590" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11589" e_stop="11522" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11521" i_stop="11338" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11337" e_stop="11275" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11274" i_stop="11070" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11069" e_stop="10966" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10965" i_stop="10657" i_length="309"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="10656" e_stop="9971" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12057" stop="11924"/>
              <exon start="11729" stop="11680"/>
              <exon start="11589" stop="11522"/>
              <exon start="11337" stop="11275"/>
              <exon start="11069" stop="11053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12043" stop="11924"/>
              <exon start="11729" stop="11680"/>
              <exon start="11589" stop="11522"/>
              <exon start="11337" stop="11275"/>
              <exon start="11069" stop="10966"/>
              <exon start="10656" stop="9972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10284" stop="9971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG : GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG : TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAGC</gDNA_template>
            <first_frame> V  E  T  N  I  K  N  I  K  M  S  M  S  S  I  F  S  R  P  R  L  V  V  K  K  V  L  A  R  A  Q  N  E  G  D  G  A  I  V  R  R  S  I  G  R :   P  E  L  Q  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  Q  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  R  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  V  H  S  E  M  P  A  G  P  G  T  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  H  Q  D  I  P  K  A  E  K  D  G  V  S  V  T  I  L  A  G  E  S  M  G  K  K  S  Q  V  F  T  R  T  P  T  M  Y  L  D  F  T  L  K  P  G  S  E  H  H  Q  P  I  P  E  T  W  N  A  F  L  Y  I  V  E  G  E  G  A  F  G  S  S  D  S  T  T  T  P  A  H  H  C  L  V  L  G  P  G  E  G  L  S  V  W  N  K  S  S  K  P  L  R  F  V  L  I  G  G  Q  P  I  N  E  P  V  V  Q  Y  G  P  F  V  M  N  T  K  S  E  I  M  Q  A  Y  Q  D  Y  Q  L  G  K  N  G  F  E  R  S  R  Q  W  Y  S  K  *  V  N  R  V  T  S  Y  T  S  *  T  L  S  A  I  V  I  S  F  L  N  D  F  K  L  C  *  S  L  L  S  F  E  M  L  C  V  L  S  D  V  Y  *  C  S  F  P  S  F  V  Q  D  C  I  Y  S  N  L  C  *  S  S  *  I  I  S  *  </first_frame>
            <second_frame>  L  K  Q  T  L  K  T  S  K  C  L  C  P  L  F  L  V  D  Q  D  W  L  L  R  K  F  W  L  E  L  K  M  K  V  M  V  L  L  L  E  E  A  L  E   : G  L  N  C  R  I  L  I  H  S  S  C  *  M  S  L  V  :  F  H  N  L  L  D  F  L  T  I  H  T  E  V  L  R  L  S  L  I  C  C  R :   E  L  L  L  I  K  I  L  L  V  T  R  V  Q  S  G  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  L  D  Q  V  L  K  R  G  C  S  F  G  *  I  Y  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  Y  T  K  T  Y  Q  R  L  K  K  M  V  F  R  L  L  F  *  Q  G  N  P  W  G  K  N  H  K  F  S  R  E  R  L  Q  C  T  L  I  S  P  *  N  Q  V  L  S  I  I  N  R  S  P  R  P  G  M  P  S  S  T  *  L  K  E  R  E  R  L  V  L  R  I  Q  P  L  H  Q  L  T  I  A  W  F  *  A  L  V  K  V  *  V  C  G  T  N  L  Q  S  H  *  G  L  F  *  *  E  G  N  R  L  T  S  L  S  C  S  M  V  H  L  L  *  T  L  R  V  R  L  C  R  L  I  K  I  I  N  L  E  R  M  D  L  K  D  Q  D  N  G  I  L  N  E  *  T  E  L  H  L  I  L  H  E  H  *  V  Q  *  S  L  V  F  L  M  I  S  S  C  V  S  L  C  F  H  L  K  C  Y  V  C  *  V  M  F  I  S  V  H  F  L  H  L  F  K  I  V  F  I  V  I  Y  V  R  V  L  E  L  Y  L  S </second_frame>
            <third_frame>   *  N  K  H  *  K  H  Q  N  V  Y  V  L  Y  F  *  *  T  K  I  G  C  *  E  S  F  G  *  S  S  K  *  R  *  W  C  Y  C  *  K  K  H  W  K  :  A  *  I  A  E  S  *  S  I  P  H  V  R  *  V  *  C :   F  T  T  C  W  I  S  *  P  S  T  Q  R  F  *  D  C  H  L  Y  V  A   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  Y  N  Q  D  W  *  C  A   : V  D  D  S  R  K  R  Y  S  S  F  R  N  A  C  W  T  R  Y  S  K  G  V  A  A  L  D  K  F  I  F  *  G  Q  N  :  D  *  A  K  V  S  R  I  A  T  P  R  H  T  K  G  *  K  R  W  C  F  G  Y  Y  F  S  R  G  I  H  G  E  K  I  T  S  F  H  A  N  A  Y  N  V  P  *  F  H  P  K  T  R  F  *  A  S  S  T  D  P  R  D  L  E  C  L  P  L  H  S  *  R  R  G  S  V  W  F  F  G  F  N  H  Y  T  S  S  P  L  L  G  F  R  P  W  *  R  S  K  C  V  E  Q  I  F  K  A  I  E  V  C  S  D  R  R  A  T  D  *  R  A  C  R  A  V  W  S  I  C  Y  E  H  *  E  *  D  Y  A  G  L  S  R  L  S  T  W  K  E  W  I  *  K  I  K  T  M  V  F  *  M  S  K  Q  S  Y  I  L  Y  F  M  N  I  K  C  N  S  H  *  F  S  *  *  F  Q  V  V  L  V  F  A  F  I  *  N  V  M  C  V  E  *  C  L  L  V  F  I  S  F  I  C  S  R  L  Y  L  *  *  F  M  L  E  F  L  N  Y  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12057" stop="11924"/>
                    <exon start="11729" stop="11680"/>
                    <exon start="11589" stop="11522"/>
                    <exon start="11337" stop="11275"/>
                    <exon start="11069" stop="10966"/>
                    <exon start="10656" stop="10173"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETNIKNIKMSMSSIFSRPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFLMLDEFSVSQPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGPGTQKGLQLWINLSSKDKMIEPRYQELLHQDIPKAEKDGVSVTILAGESMGKKSQVFTRTPTMYLDFTLKPGSEHHQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFVLIGGQPINEPVVQYGPFVMNTKSEIMQAYQDYQLGKNGFERSRQWYSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13817" PGL_stop="17484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13817" e_stop="14228"/>
            <exon e_start="15599" e_stop="16838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13817" e_stop="14228" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="15599" e_stop="16838" e_length="1240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13817" stop="14228"/>
              <exon start="15599" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13826" stop="14228"/>
              <exon start="15599" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13827" stop="14228"/>
              <exon start="15599" stop="16743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13846" stop="14228"/>
              <exon start="15599" stop="16072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="14228"/>
              <exon start="15599" stop="15693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13873" stop="14160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15818" stop="16519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15894" stop="16799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16032" stop="16797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16045" stop="16787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16123" stop="16838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16157" stop="16801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16386" stop="16809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16386" stop="16789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</gDNA_template>
            <first_frame> F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q  F  S  V  L  F  R  I  F  E  S  *  I  W  R  T  C  L  Y  T  E  *  V  I  F  *  C  N  *  M  Y  H  V  P   </first_frame>
            <second_frame>  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H  S  F  R  Y  C  L  G  Y  L  K  V  K  S  G  E  L  V  C  I  L  N  E  L  Y  F  N  A  T  E  C  I  M  C  Q  </second_frame>
            <third_frame>   Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  V  F  G  I  V  *  D  I  *  K  L  N  L  E  N  L  F  V  Y  *  M  S  Y  I  L  M  Q  L  N  V  S  C  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13874" stop="14228"/>
                    <exon start="15599" stop="16503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13817" e_stop="14228"/>
            <exon e_start="15599" e_stop="16800"/>
            <exon e_start="16870" e_stop="16883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.584" e_score="0.993"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13817" e_stop="14228" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="15599" e_stop="16800" e_length="1202"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.584">
            <gDNA_intron_boundary i_start="16801" i_stop="16869" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="16870" e_stop="16883" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13817" stop="14228"/>
              <exon start="15599" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13826" stop="14228"/>
              <exon start="15599" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13827" stop="14228"/>
              <exon start="15599" stop="16743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13846" stop="14228"/>
              <exon start="15599" stop="16072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="14228"/>
              <exon start="15599" stop="15693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13873" stop="14160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13904" stop="14228"/>
              <exon start="15599" stop="16800"/>
              <exon start="16870" stop="16883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15818" stop="16519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15894" stop="16799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16032" stop="16797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16045" stop="16787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16386" stop="16789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGA : GGAACAGAACGAAA</gDNA_template>
            <first_frame> F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q  F  S  V  L  F  R  I  F  E  S  *  I  W  R  T  C  L  Y  T  E  *  :  G  T  E  R   </first_frame>
            <second_frame>  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H  S  F  R  Y  C  L  G  Y  L  K  V  K  S  G  E  L  V  C  I  L  N  E :   E  Q  N  E  </second_frame>
            <third_frame>   Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  V  F  G  I  V  *  D  I  *  K  L  N  L  E  N  L  F  V  Y  *  M   : R  N  R  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13874" stop="14228"/>
                    <exon start="15599" stop="16503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13817" e_stop="14228"/>
            <exon e_start="15599" e_stop="16736"/>
            <exon e_start="16870" e_stop="16889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.584" e_score="0.997"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13817" e_stop="14228" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="15599" e_stop="16736" e_length="1138"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.584">
            <gDNA_intron_boundary i_start="16737" i_stop="16869" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="16870" e_stop="16889" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13817" stop="14228"/>
              <exon start="15599" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13826" stop="14228"/>
              <exon start="15599" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13846" stop="14228"/>
              <exon start="15599" stop="16072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="14228"/>
              <exon start="15599" stop="15693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13873" stop="14160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15818" stop="16519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16329" stop="16736"/>
              <exon start="16870" stop="16889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16329" stop="16736"/>
              <exon start="16870" stop="16888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACA : GGAACAGAACGAAAGGAGGA</gDNA_template>
            <first_frame> F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q :   E  Q  N  E  R  R  </first_frame>
            <second_frame>  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H   : R  N  R  T  K  G  G </second_frame>
            <third_frame>   Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  :  G  T  E  R  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13874" stop="14228"/>
                    <exon start="15599" stop="16503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="13817" e_stop="14228"/>
            <exon e_start="15599" e_stop="16748"/>
            <exon e_start="17442" e_stop="17484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.725" e_score="0.992"/>
          <exon-only e_score="0.488"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13817" e_stop="14228" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="14229" i_stop="15598" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="15599" e_stop="16748" e_length="1150"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.725">
            <gDNA_intron_boundary i_start="16749" i_stop="17441" i_length="693"/>
          </intron>
          <exon e_serial="3" e_score="0.488">
            <gDNA_exon_boundary e_start="17442" e_stop="17484" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13817" stop="14228"/>
              <exon start="15599" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13826" stop="14228"/>
              <exon start="15599" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13827" stop="14228"/>
              <exon start="15599" stop="16743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14228"/>
              <exon start="15599" stop="15804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="14141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13846" stop="14228"/>
              <exon start="15599" stop="16072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="14228"/>
              <exon start="15599" stop="15693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13873" stop="14160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15818" stop="16519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15837" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16136" stop="16577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16249" stop="16748"/>
              <exon start="17442" stop="17484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288843" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATT : GAATTCAACAATTGTAAGTCAAAGTACTAAGACAGAAGAAACC</gDNA_template>
            <first_frame> F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q  F  S  V  L :   N  S  T  I  V  S  Q  S  T  K  T  E  E  T </first_frame>
            <second_frame>  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H  S  F  R  Y   : *  I  Q  Q  L  *  V  K  V  L  R  Q  K  K   </second_frame>
            <third_frame>   Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  V  F  G  I  :  E  F  N  N  C  K  S  K  Y  *  D  R  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13874" stop="14228"/>
                    <exon start="15599" stop="16503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20155" PGL_stop="16274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20155" e_stop="20005"/>
            <exon e_start="17409" e_stop="17065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="20155" e_stop="20005" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20004" i_stop="17410" i_length="2595"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="17409" e_stop="17065" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20155" stop="20005"/>
              <exon start="17409" stop="17121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20079" stop="20005"/>
              <exon start="17409" stop="17065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGAAGGAATCGAAGCCGTTCTTCATCGGATTCGCCACCGTTTGCGGCGTCATTCCGGGGATTATTGGTTTCTGCGTTATGTCAGCCACCAATACTCGCAGTCCTGAACTTGAAGCCCAACTACGGAAGAACGCTCGTCCAGAATCCCTA : ATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAA</gDNA_template>
            <first_frame> N  E  G  I  E  A  V  L  H  R  I  R  H  R  L  R  R  H  S  G  D  Y  W  F  L  R  Y  V  S  H  Q  Y  S  Q  S  *  T  *  S  P  T  T  E  E  R  S  S  R  I  P   : N  D  G  *  S  *  *  R  E  V  G  *  V  P  W  R  T  A  E  K  G  E  H  K  *  Q  I  C  C  S  S  K  G  R  N  V  D  K  E  T  L  P  K  N  S  T  S  P  K  S  K  *  Y  *  S  K  E  G  T  E  V  D  R  G  L  T  G  F  V  D  L  V  W  Y  F  Y  F  F  Q  W  I  K  L  W  N  G  I  M  D  T  T  G  V  I  A  I  Y  L  *  N  L  Y  K  *  N  L  K  N  D  C  C  R  M  S  E  </first_frame>
            <second_frame>  T  K  E  S  K  P  F  F  I  G  F  A  T  V  C  G  V  I  P  G  I  I  G  F  C  V  M  S  A  T  N  T  R  S  P  E  L  E  A  Q  L  R  K  N  A  R  P  E  S  L  :  M  M  G  K  V  N  K  E  R  L  A  E  Y  L  G  E  L  Q  R  K  E  N  T  N  D  R  Y  V  A  A  L  K  G  E  T  L  T  R  K  P  Y  Q  R  I  Q  P  V  P  N  P  S  D  I  E  A  K  K  E  Q  K  *  I  V  A  *  P  V  L  L  I  *  F  G  T  S  T  F  S  N  G  *  S  F  G  M  E  S  W  T  Q  L  E  L  L  L  Y  I  F  E  T  C  T  S  K  I  *  R  T  T  V  V  E  *  V  K </second_frame>
            <third_frame>   R  R  N  R  S  R  S  S  S  D  S  P  P  F  A  A  S  F  R  G  L  L  V  S  A  L  C  Q  P  P  I  L  A  V  L  N  L  K  P  N  Y  G  R  T  L  V  Q  N  P  * :   *  W  V  K  L  I  K  R  G  W  L  S  T  L  A  N  C  R  E  R  R  T  Q  M  T  D  M  L  Q  L  *  R  A  K  R  *  Q  G  N  L  T  K  E  F  N  Q  S  Q  I  Q  V  I  L  K  Q  R  R  N  R  S  R  S  W  L  N  R  F  C  *  F  S  L  V  L  L  L  F  P  M  D  K  A  L  E  W  N  H  G  H  N  W  S  Y  C  Y  I  S  L  K  L  V  Q  V  K  F  E  E  R  L  L  S  N  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20154" stop="20005"/>
                    <exon start="17409" stop="17227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKESKPFFIGFATVCGVIPGIIGFCVMSATNTRSPELEAQLRKNARPESLMMGKVNKERLAEYLGELQRKENTNDRYVAALKGETLTRKPYQRIQPVPNPSDIEAKKEQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17149" e_stop="17124"/>
            <exon e_start="16823" e_stop="16274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.538"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.538">
            <gDNA_exon_boundary e_start="17149" e_stop="17124" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17123" i_stop="16824" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="16823" e_stop="16274" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17149" stop="17124"/>
              <exon start="16823" stop="16274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGACACAACTGGAGTTATTGCTAT : ATTCAGTTGCATTAAAATATAACTCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGAAAAAAAAAAGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGACTCTCCGCCTGCAGGGGTTGCATCCGCAGATGTTTGGTCTGTTTGGCACCCACTGA</gDNA_template>
            <first_frame> M  D  T  T  G  V  I  A  I :   F  S  C  I  K  I  *  L  I  Q  Y  T  N  K  F  S  R  F  N  F  Q  I  S  *  T  I  P  K  T  V  V  L  *  Y  L  I  L  *  P  N  L  K  E  K  K  K  S  Q  I  V  H  I  H  M  M  E  H  G  S  T  E  T  P  E  *  K  S  Y  S  N  I  S  T  N  N  H  T  N  T  Q  K  D  V  A  I  *  H  L  V  D  F  T  V  V  F  Q  Q  L  L  E  K  A  *  H  S  R  I  N  K  Q  K  E  H  Q  R  D  D  H  R  S  R  G  L  G  V  V  *  S  L  V  S  A  S  F  S  *  P  C  *  Q  A  P  H  W  *  L  D  H  L  I  R  P  G  F  P  E  L  R  C  L  E  H  H  K  T  L  R  L  Q  G  L  H  P  Q  M  F  G  L  F  G  T  H  * </first_frame>
            <second_frame>  W  T  Q  L  E  L  L  L   : Y  S  V  A  L  K  Y  N  S  F  S  I  Q  T  S  S  P  D  L  T  F  K  Y  P  K  Q  Y  R  K  L  W  F  F  N  T  L  F  S  D  Q  I  *  K  K  K  K  R  A  K  *  Y  T  F  T  *  W  S  M  V  L  L  K  H  Q  S  K  R  A  T  P  T  L  A  Q  T  I  T  Q  I  H  K  R  M  *  L  Y  N  T  S  L  T  S  Q  S  Y  F  N  S  Y  S  R  R  H  S  T  V  E  S  T  N  K  R  S  I  N  V  M  I  I  A  V  E  A  W  A  L  C  E  A  L  F  L  H  L  F  P  S  L  A  N  K  L  L  I  G  D  W  T  I  *  F  G  Q  D  F  L  N  C  V  A  *  S  T  I  R  L  S  A  C  R  G  C  I  R  R  C  L  V  C  L  A  P  T   </second_frame>
            <third_frame>   G  H  N  W  S  Y  C  Y  :  I  Q  L  H  *  N  I  T  H  S  V  Y  K  Q  V  L  Q  I  *  L  S  N  I  L  N  N  T  E  N  C  G  S  L  I  P  Y  S  L  T  K  F  K  R  K  K  K  E  P  N  S  T  H  S  H  D  G  A  W  F  Y  *  N  T  R  V  K  E  L  L  Q  H  *  H  K  Q  S  H  K  Y  T  K  G  C  S  Y  I  T  P  R  *  L  H  S  R  I  S  T  A  T  R  E  G  I  A  Q  *  N  Q  Q  T  K  G  A  S  T  *  *  S  S  Q  *  R  P  G  R  C  V  K  P  C  F  C  I  F  F  L  A  L  L  T  S  S  S  L  V  T  G  P  S  D  S  A  R  I  S  *  I  A  L  L  R  A  P  *  D  S  P  P  A  G  V  A  S  A  D  V  W  S  V  W  H  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16572" stop="16375"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNTSLTSQSYFNSYSRRHSTVESTNKRSINVMIIAVEAWALCEALFLHLFPSLANKLLIGDWTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21472" PGL_stop="20834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21472" e_stop="20834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="21472" e_stop="20834" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21472" stop="20834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGCTTCAACAACTTCAACTTTCCTTTGTGCGTCCCCGCACTCTATCCGGGTTACAGTTGCCTTCAAATTTAAATAAGTTGGTACTTGAAGGAATTCATATAGAAAGTGTTATTCCCTTCATTGCGGGACTACCAAGCCTGGAATATCTCCGATTACAGGATGTGTGTTTTCCTCAATCAGAAGAGTGGTGCCTTGGAGATATGACGTTCCATAAACTTAAGTTGTTGAAACTGGTGAAGTTAAATATATCAAGGTGGGATGTCTCAGAGGAATCATTTCCGTTGCTTGAAACACTCGTTATAAAGAAGTGCGGTGACCTAGAGGAGATCCCAGTTAGCTTTGCTGATATTCCCACATTGGAACAGATTAAATTGATTGGGTCCTGGAAAGTATCTCTGGAGGATTCAGCTGTGAGAATGAAGGAAGAAATCATACAGATTGAAGGATGTGATCGTTTACACCTCGTCAAACAACACTCAGATTGATGATAGCTAATTGTTGCAGCCACTCAAGTCTTGCTAGCCCATTTCTCTTTTGTTGTAACACAACTACTATTTGCTACGTTTGTTTTCATTGATACACTCTTTTTATGTATCATATGATTGGAGATAAATATAAATCAGTTGCTCATTCACTG</gDNA_template>
            <first_frame> P  A  S  T  T  S  T  F  L  C  A  S  P  H  S  I  R  V  T  V  A  F  K  F  K  *  V  G  T  *  R  N  S  Y  R  K  C  Y  S  L  H  C  G  T  T  K  P  G  I  S  P  I  T  G  C  V  F  S  S  I  R  R  V  V  P  W  R  Y  D  V  P  *  T  *  V  V  E  T  G  E  V  K  Y  I  K  V  G  C  L  R  G  I  I  S  V  A  *  N  T  R  Y  K  E  V  R  *  P  R  G  D  P  S  *  L  C  *  Y  S  H  I  G  T  D  *  I  D  W  V  L  E  S  I  S  G  G  F  S  C  E  N  E  G  R  N  H  T  D  *  R  M  *  S  F  T  P  R  Q  T  T  L  R  L  M  I  A  N  C  C  S  H  S  S  L  A  S  P  F  L  F  C  C  N  T  T  T  I  C  Y  V  C  F  H  *  Y  T  L  F  M  Y  H  M  I  G  D  K  Y  K  S  V  A  H  S  L </first_frame>
            <second_frame>  Q  L  Q  Q  L  Q  L  S  F  V  R  P  R  T  L  S  G  L  Q  L  P  S  N  L  N  K  L  V  L  E  G  I  H  I  E  S  V  I  P  F  I  A  G  L  P  S  L  E  Y  L  R  L  Q  D  V  C  F  P  Q  S  E  E  W  C  L  G  D  M  T  F  H  K  L  K  L  L  K  L  V  K  L  N  I  S  R  W  D  V  S  E  E  S  F  P  L  L  E  T  L  V  I  K  K  C  G  D  L  E  E  I  P  V  S  F  A  D  I  P  T  L  E  Q  I  K  L  I  G  S  W  K  V  S  L  E  D  S  A  V  R  M  K  E  E  I  I  Q  I  E  G  C  D  R  L  H  L  V  K  Q  H  S  D  *  *  *  L  I  V  A  A  T  Q  V  L  L  A  H  F  S  F  V  V  T  Q  L  L  F  A  T  F  V  F  I  D  T  L  F  L  C  I  I  *  L  E  I  N  I  N  Q  L  L  I  H   </second_frame>
            <third_frame>   S  F  N  N  F  N  F  P  L  C  V  P  A  L  Y  P  G  Y  S  C  L  Q  I  *  I  S  W  Y  L  K  E  F  I  *  K  V  L  F  P  S  L  R  D  Y  Q  A  W  N  I  S  D  Y  R  M  C  V  F  L  N  Q  K  S  G  A  L  E  I  *  R  S  I  N  L  S  C  *  N  W  *  S  *  I  Y  Q  G  G  M  S  Q  R  N  H  F  R  C  L  K  H  S  L  *  R  S  A  V  T  *  R  R  S  Q  L  A  L  L  I  F  P  H  W  N  R  L  N  *  L  G  P  G  K  Y  L  W  R  I  Q  L  *  E  *  R  K  K  S  Y  R  L  K  D  V  I  V  Y  T  S  S  N  N  T  Q  I  D  D  S  *  L  L  Q  P  L  K  S  C  *  P  I  S  L  L  L  *  H  N  Y  Y  L  L  R  L  F  S  L  I  H  S  F  Y  V  S  Y  D  W  R  *  I  *  I  S  C  S  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21471" stop="20986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQQLQLSFVRPRTLSGLQLPSNLNKLVLEGIHIESVIPFIAGLPSLEYLRLQDVCFPQSEEWCLGDMTFHKLKLLKLVKLNISRWDVSEESFPLLETLVIKKCGDLEEIPVSFADIPTLEQIKLIGSWKVSLEDSAVRMKEEIIQIEGCDRLHLVKQHSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="22651" PGL_stop="21778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22651" e_stop="21778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22651" e_stop="21778" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22651" stop="22351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22441" stop="21778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="21942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGAAGAGAGTTGCCAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTGCCCGCCTGAACTACAAGATGTGAGTCAAGCAGTAGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATGCTTTATTTGACTATCTTGACAGTGAGTTCGAAGAATATAGTCTGGCAACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGTACATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACATGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATATATCCAGTTTCAACCTTTGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAGCAGAATCTATTGATGTGATTCTCTTCTGTCAGATTAGTGAATTGCGACTTCTTAAAGTCTTGGATTTGAGTTCTTATACTGTGGAATTTTTGTCGTTAGCTACATTCAAACCACTAAATCAGCTGAAGTACCTCGCAGTTCAGGCTGATAAATTCTATTTTGAT</gDNA_template>
            <first_frame> N  R  R  E  L  P  I  V  A  E  K  S  V  S  K  G  R  L  P  A  *  T  T  R  C  E  S  S  S  S  R  K  M  Q  R  T  A  P  S  G  C  L  G  S  W  N  N  Q  K  K  E  N  G  R  I  L  V  E  *  G  E  R  C  F  I  *  L  S  *  Q  *  V  R  R  I  *  S  G  N  Y  A  V  E  F  *  *  L  T  P  L  F  K  A  L  S  S  L  Y  G  N  V  F  G  G  R  K  N  S  S  I  Y  I  D  K  F  M  D  C  *  R  I  R  G  E  H  *  I  W  Y  I  N  G  R  G  S  *  R  L  L  D  G  S  H  *  Q  *  H  G  N  A  F  K  E  K  L  *  G  *  S  Q  I  L  S  G  S  *  C  C  A  S  L  L  L  G  K  E  *  R  S  K  V  Y  A  C  S  E  G  S  I  Y  P  V  S  T  F  G  L  E  G  N  S  S  E  L  Q  F  *  *  R  A  F  Q  V  C  I  S  G  L  Q  N  T  E  A  F  P  S  T  L  E  V  I  D  N  D  Q  S  S  R  I  Y  *  C  D  S  L  L  S  D  *  *  I  A  T  S  *  S  L  G  F  E  F  L  Y  C  G  I  F  V  V  S  Y  I  Q  T  T  K  S  A  E  V  P  R  S  S  G  *  *  I  L  F  *  </first_frame>
            <second_frame>  T  E  E  S  C  Q  L  L  Q  K  K  V  F  Q  K  E  D  C  P  P  E  L  Q  D  V  S  Q  A  V  A  E  K  C  K  G  L  P  L  V  V  V  L  V  A  G  I  I  K  K  R  K  M  E  E  S  W  W  N  E  V  K  D  A  L  F  D  Y  L  D  S  E  F  E  E  Y  S  L  A  T  M  Q  L  S  F  D  N  L  P  H  C  L  K  P  C  L  L  Y  M  G  M  F  S  E  D  A  R  I  P  A  S  T  L  I  S  L  W  I  A  E  G  F  V  E  N  T  E  S  G  T  L  M  E  E  E  A  E  G  Y  L  M  D  L  I  S  S  N  M  V  M  L  S  K  R  S  Y  K  G  K  V  K  Y  C  Q  V  H  D  V  V  H  H  F  C  L  E  K  S  R  E  A  K  F  M  L  A  V  K  G  Q  Y  I  Q  F  Q  P  L  D  W  K  G  T  R  V  S  F  S  F  S  E  E  L  S  K  F  A  S  L  V  S  K  T  Q  K  P  F  H  Q  H  L  R  S  L  I  T  T  N  R  A  E  S  I  D  V  I  L  F  C  Q  I  S  E  L  R  L  L  K  V  L  D  L  S  S  Y  T  V  E  F  L  S  L  A  T  F  K  P  L  N  Q  L  K  Y  L  A  V  Q  A  D  K  F  Y  F  D </second_frame>
            <third_frame>   Q  K  R  V  A  N  C  C  R  K  K  C  F  K  R  K  I  A  R  L  N  Y  K  M  *  V  K  Q  *  Q  K  N  A  K  D  C  P  *  W  L  S  W  *  L  E  *  S  K  K  G  K  W  K  N  L  G  G  M  R  *  K  M  L  Y  L  T  I  L  T  V  S  S  K  N  I  V  W  Q  L  C  S  *  V  L  I  T  Y  P  T  V  *  S  L  V  F  F  I  W  E  C  F  R  R  T  Q  E  F  Q  H  L  H  *  *  V  Y  G  L  L  K  D  S  W  R  T  L  N  L  V  H  *  W  K  R  K  L  K  V  T  *  W  I  S  L  A  V  T  W  *  C  F  Q  R  E  V  I  R  V  K  S  N  T  V  R  F  M  M  L  C  I  T  F  A  W  K  R  V  E  K  Q  S  L  C  L  Q  *  R  V  N  I  S  S  F  N  L  W  I  G  R  E  L  E  *  A  S  V  L  V  K  S  F  P  S  L  H  L  W  S  P  K  H  R  S  L  S  I  N  T  *  G  H  *  *  R  P  I  E  Q  N  L  L  M  *  F  S  S  V  R  L  V  N  C  D  F  L  K  S  W  I  *  V  L  I  L  W  N  F  C  R  *  L  H  S  N  H  *  I  S  *  S  T  S  Q  F  R  L  I  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22650" stop="21778"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEESCQLLQKKVFQKEDCPPELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEFEEYSLATMQLSFDNLPHCLKPCLLYMGMFSEDARIPASTLISLWIAEGFVENTESGTLMEEEAEGYLMDLISSNMVMLSKRSYKGKVKYCQVHDVVHHFCLEKSREAKFMLAVKGQYIQFQPLDWKGTRVSFSFSEELSKFASLVSKTQKPFHQHLRSLITTNRAESIDVILFCQISELRLLKVLDLSSYTVEFLSLATFKPLNQLKYLAVQADKFYFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="29348" PGL_stop="27826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29348" e_stop="29144"/>
            <exon e_start="28734" e_stop="28331"/>
            <exon e_start="28138" e_stop="27826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29348" e_stop="29144" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.778">
            <gDNA_intron_boundary i_start="29143" i_stop="28735" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28734" e_stop="28331" e_length="404"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28330" i_stop="28139" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28138" e_stop="27826" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29348" stop="29144"/>
              <exon start="28734" stop="28331"/>
              <exon start="28138" stop="27910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29347" stop="29144"/>
              <exon start="28734" stop="28331"/>
              <exon start="28138" stop="27832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29334" stop="29144"/>
              <exon start="28734" stop="28331"/>
              <exon start="28138" stop="27828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29334" stop="29144"/>
              <exon start="28734" stop="28331"/>
              <exon start="28138" stop="27899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29333" stop="29144"/>
              <exon start="28734" stop="28331"/>
              <exon start="28138" stop="28026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28331"/>
              <exon start="28138" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28570" stop="28331"/>
              <exon start="28138" stop="27826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28523" stop="28331"/>
              <exon start="28138" stop="27848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAAGTAAACAGATCAACACAACAAAATTCTGATTTTTTCTTTGAAATTTTAGAGAAAAAAAAAGATGGAAGGCATAAATATATCGACTCATCCAGATGTTCCAGGTGAACCTACGCAGACAGGAACATCAATTCTTGAGACTGCAACAGCTACTATTCAAGGATTTGGTCCTATCAACAAAATTCATCAACATCTTTGCGC : GTTCCATTTCTACGGACACGACATGACACGGCAAGTGGAGGCGCACCACTTCTGTGGACACCAAAATGAAGAGTTCAGGCAGTGTCTCATTTACGACAGGCCTGATGCCGATGCTCGTCTAATCGGGCTCGAGTACATCGTATCGGAGGAGCTGTTCTTGACATTGCCAGACGACGAGAAGAAATTCTGGCATTCCCACTTGTACGAGGTGAAAAGTGGTGTCTTGTTCATGCCCGGTGTTCCAGGCCCGATTCAACGACAAGATCATGAAAAAACGGTGAAAACTTATGGCAAAGTGATACATTTCTGGCAGGTTGATAGAGGTGATACACTTCCTTTGGGAATTCCTCAAGTTATGATGGCGCTTACTAGAGATGGTCAACTCGATCAGAACCTTGTTCAAG : ATGTGGAGAAGCGTTTTGGTGTGTCCTTTGATGAAGAAAGGGAGAAAAGGGCATATATGGAAGGTCCGTCCCATGGGGTTCACCCACTTGCTAATGCTGGAGGCAAAGGCATTCGCACTGTCCTTAGAGAAGTTGATTGTAAACCTATCGAATCTGTCCCTAGAGTTTTTGTTTAAGCTTAGGTTCATTTCGTTTTGCGTTTATTTTGTTCAAAATAAAATTTTACTTTTGTGACAGGACTTGTATATGTATATGTTTCGAGTGTTGGTGAATGAATAATTCCCCTCTTCTATGTTTATGTAATCAAATACTG</gDNA_template>
            <first_frame> K  I  S  K  Q  I  N  T  T  K  F  *  F  F  L  *  N  F  R  E  K  K  R  W  K  A  *  I  Y  R  L  I  Q  M  F  Q  V  N  L  R  R  Q  E  H  Q  F  L  R  L  Q  Q  L  L  F  K  D  L  V  L  S  T  K  F  I  N  I  F  A   : R  S  I  S  T  D  T  T  *  H  G  K  W  R  R  T  T  S  V  D  T  K  M  K  S  S  G  S  V  S  F  T  T  G  L  M  P  M  L  V  *  S  G  S  S  T  S  Y  R  R  S  C  S  *  H  C  Q  T  T  R  R  N  S  G  I  P  T  C  T  R  *  K  V  V  S  C  S  C  P  V  F  Q  A  R  F  N  D  K  I  M  K  K  R  *  K  L  M  A  K  *  Y  I  S  G  R  L  I  E  V  I  H  F  L  W  E  F  L  K  L  *  W  R  L  L  E  M  V  N  S  I  R  T  L  F  K  :  M  W  R  S  V  L  V  C  P  L  M  K  K  G  R  K  G  H  I  W  K  V  R  P  M  G  F  T  H  L  L  M  L  E  A  K  A  F  A  L  S  L  E  K  L  I  V  N  L  S  N  L  S  L  E  F  L  F  K  L  R  F  I  S  F  C  V  Y  F  V  Q  N  K  I  L  L  L  *  Q  D  L  Y  M  Y  M  F  R  V  L  V  N  E  *  F  P  S  S  M  F  M  *  S  N  T  </first_frame>
            <second_frame>  K  *  V  N  R  S  T  Q  Q  N  S  D  F  F  F  E  I  L  E  K  K  K  D  G  R  H  K  Y  I  D  S  S  R  C  S  R  *  T  Y  A  D  R  N  I  N  S  *  D  C  N  S  Y  Y  S  R  I  W  S  Y  Q  Q  N  S  S  T  S  L  R  :  V  P  F  L  R  T  R  H  D  T  A  S  G  G  A  P  L  L  W  T  P  K  *  R  V  Q  A  V  S  H  L  R  Q  A  *  C  R  C  S  S  N  R  A  R  V  H  R  I  G  G  A  V  L  D  I  A  R  R  R  E  E  I  L  A  F  P  L  V  R  G  E  K  W  C  L  V  H  A  R  C  S  R  P  D  S  T  T  R  S  *  K  N  G  E  N  L  W  Q  S  D  T  F  L  A  G  *  *  R  *  Y  T  S  F  G  N  S  S  S  Y  D  G  A  Y  *  R  W  S  T  R  S  E  P  C  S  R :   C  G  E  A  F  W  C  V  L  *  *  R  K  G  E  K  G  I  Y  G  R  S  V  P  W  G  S  P  T  C  *  C  W  R  Q  R  H  S  H  C  P  *  R  S  *  L  *  T  Y  R  I  C  P  *  S  F  C  L  S  L  G  S  F  R  F  A  F  I  L  F  K  I  K  F  Y  F  C  D  R  T  C  I  C  I  C  F  E  C  W  *  M  N  N  S  P  L  L  C  L  C  N  Q  I  L </second_frame>
            <third_frame>   N  K  *  T  D  Q  H  N  K  I  L  I  F  S  L  K  F  *  R  K  K  K  M  E  G  I  N  I  S  T  H  P  D  V  P  G  E  P  T  Q  T  G  T  S  I  L  E  T  A  T  A  T  I  Q  G  F  G  P  I  N  K  I  H  Q  H  L  C  A :   F  H  F  Y  G  H  D  M  T  R  Q  V  E  A  H  H  F  C  G  H  Q  N  E  E  F  R  Q  C  L  I  Y  D  R  P  D  A  D  A  R  L  I  G  L  E  Y  I  V  S  E  E  L  F  L  T  L  P  D  D  E  K  K  F  W  H  S  H  L  Y  E  V  K  S  G  V  L  F  M  P  G  V  P  G  P  I  Q  R  Q  D  H  E  K  T  V  K  T  Y  G  K  V  I  H  F  W  Q  V  D  R  G  D  T  L  P  L  G  I  P  Q  V  M  M  A  L  T  R  D  G  Q  L  D  Q  N  L  V  Q   : D  V  E  K  R  F  G  V  S  F  D  E  E  R  E  K  R  A  Y  M  E  G  P  S  H  G  V  H  P  L  A  N  A  G  G  K  G  I  R  T  V  L  R  E  V  D  C  K  P  I  E  S  V  P  R  V  F  V  *  A  *  V  H  F  V  L  R  L  F  C  S  K  *  N  F  T  F  V  T  G  L  V  Y  V  Y  V  S  S  V  G  E  *  I  I  P  L  F  Y  V  Y  V  I  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29292" stop="29144"/>
                    <exon start="28734" stop="28331"/>
                    <exon start="28138" stop="27963"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKMEGINISTHPDVPGEPTQTGTSILETATATIQGFGPINKIHQHLCAFHFYGHDMTRQVEAHHFCGHQNEEFRQCLIYDRPDADARLIGLEYIVSEELFLTLPDDEKKFWHSHLYEVKSGVLFMPGVPGPIQRQDHEKTVKTYGKVIHFWQVDRGDTLPLGIPQVMMALTRDGQLDQNLVQDVEKRFGVSFDEEREKRAYMEGPSHGVHPLANAGGKGIRTVLREVDCKPIESVPRVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="41697" PGL_stop="51067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41697" e_stop="42207"/>
            <exon e_start="47176" e_stop="47489"/>
            <exon e_start="48142" e_stop="48279"/>
            <exon e_start="48625" e_stop="48690"/>
            <exon e_start="48821" e_stop="48889"/>
            <exon e_start="49220" e_stop="49575"/>
            <exon e_start="50412" e_stop="50431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41697" e_stop="42207" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="42208" i_stop="47175" i_length="4968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47176" e_stop="47489" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="47490" i_stop="48141" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48142" e_stop="48279" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48280" i_stop="48624" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48625" e_stop="48690" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="48691" i_stop="48820" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48821" e_stop="48889" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48890" i_stop="49219" i_length="330"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49220" e_stop="49575" e_length="356"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="49576" i_stop="50411" i_length="836"/>
          </intron>
          <exon e_serial="7" e_score="0.650">
            <gDNA_exon_boundary e_start="50412" e_stop="50431" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41697" stop="42104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41792" stop="42207"/>
              <exon start="47176" stop="47311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47186" stop="47489"/>
              <exon start="48142" stop="48279"/>
              <exon start="48625" stop="48690"/>
              <exon start="48821" stop="48889"/>
              <exon start="49220" stop="49311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47186" stop="47489"/>
              <exon start="48142" stop="48190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47220" stop="47489"/>
              <exon start="48142" stop="48279"/>
              <exon start="48625" stop="48690"/>
              <exon start="48821" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47460" stop="47489"/>
              <exon start="48142" stop="48279"/>
              <exon start="48625" stop="48690"/>
              <exon start="48821" stop="48889"/>
              <exon start="49220" stop="49575"/>
              <exon start="50412" stop="50431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48664" stop="48690"/>
              <exon start="48821" stop="48889"/>
              <exon start="49220" stop="49548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCACCCCACCCACCCACCTCTCTCTCTATTAACTTCTCAACCTCCAAATCTTAACAATCCAATTCGAACAAATTATCAAATGTATCCATCATCAACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCTGGAGGAGGAGTTTTGCCGACGACTTCAACGACGCCGTTGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTG : TTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG : TTTCAGTTTGGCTTGTCTCAGACAGCTCTAGAAATAGCATCTATGGATAGATTGCTGCACATCCCCGAGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGTTGTGCTACTCATCCTCGCAGCATTGCAGAAAGG : GAGAGAAGAACCAGAATTAGTGGGAAACTAAAGAAGTTACAAGATCTTGTTCCAAACATGGACAAG : CAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTCAG : AATCTGAATACAGAACTTGAAAACTGCAAATGTGGATGTAGGAAATCAAGTCAATAACAAAATGGGAGGAAGCACTTTAGCTGAAGATTGACTTAAAAGGATTTTTGTCACCATTATTTTGCTTCTTAGAAACTCAAATTTGTACATATGGAAGTAAATTTCATACTAGTTTTTTAAAGCTAAAAAGTGAACTCTCTTTGTTTTTTTTTCTTTTCCCTTTTCCAGTTAGAAGACTACGTATATGATTGTTTTGGATTATTTCTAGTTTTCTTTTTTCATCTAACATTTACATTTTTAATTTATTTTTGAGTTTATTTTGCTTGAAGATCATAAAAGCTAATTGATGATGTTGTACA : AAAATTGAAGATAATAAACA</gDNA_template>
            <first_frame> P  H  P  T  H  P  P  L  S  L  L  T  S  Q  P  P  N  L  N  N  P  I  R  T  N  Y  Q  M  Y  P  S  S  T  S  S  S  S  Q  G  S  M  S  H  T  S  T  T  A  G  G  A  G  G  G  L  T  R  Y  G  S  A  P  G  S  F  L  T  T  A  V  E  A  V  V  N  G  N  H  E  F  A  S  H  G  S  H  H  S  H  L  G  P  S  R  F  F  Q  S  N  L  A  S  T  S  L  N  S  E  S  T  S  K  A  K  E  Q  S  N  L  Q  R  S  I  G  F  N  D  L  T  I  G  G  G  S  G  A  G  G  G  V  L  P  T  T  S  T  T  P  L  V  R  H  S  S  S  P  A  R  F  L  N  Q  L  A  T  A  A  G  D  T   : V  S  M  G  R  G  S  Y  N  P  K  G  G  G  D  S  G  R  G  I  T  R  L  N  S  Q  L  S  F  T  T  Q  E  A  L  S  Q  I  A  E  E  N  E  D  I  E  G  T  S  I  A  N  G  H  R  K  S  T  H  S  Y  A  S  A  S  S  F  A  M  G  S  W  E  D  N  N  S  I  M  F  S  V  T  P  S  K  R  S  K  Q  I  S  N  D  I  V  N  G  L  D  D  G  E  T  Q  :  F  Q  F  G  L  S  Q  T  A  L  E  I  A  S  M  D  R  L  L  H  I  P  E  D  S  V  P  C  K  I  R  A  K  R  G  C  A  T  H  P  R  S  I  A  E  R  :  E  R  R  T  R  I  S  G  K  L  K  K  L  Q  D  L  V  P  N  M  D  K  :  Q  T  S  Y  A  D  M  L  D  L  A  V  Q  H  I  R  T  L  Q  D  Q  V  Q  :  N  L  N  T  E  L  E  N  C  K  C  G  C  R  K  S  S  Q  *  Q  N  G  R  K  H  F  S  *  R  L  T  *  K  D  F  C  H  H  Y  F  A  S  *  K  L  K  F  V  H  M  E  V  N  F  I  L  V  F  *  S  *  K  V  N  S  L  C  F  F  F  F  S  L  F  Q  L  E  D  Y  V  Y  D  C  F  G  L  F  L  V  F  F  F  H  L  T  F  T  F  L  I  Y  F  *  V  Y  F  A  *  R  S  *  K  L  I  D  D  V  V  Q :   K  L  K  I  I  N  </first_frame>
            <second_frame>  L  T  P  P  T  H  L  S  L  Y  *  L  L  N  L  Q  I  L  T  I  Q  F  E  Q  I  I  K  C  I  H  H  Q  H  L  L  H  H  K  V  Q  *  A  T  P  A  P  P  L  A  A  P  A  V  V  S  L  A  T  V  Q  L  R  D  H  F  *  L  Q  Q  L  K  P  S  L  T  V  I  T  S  S  L  L  T  D  L  I  T  H  T  L  V  L  H  G  F  F  S  P  I  *  H  L  L  R  *  I  P  N  L  Q  V  K  R  R  N  N  R  I  Y  R  G  Q  L  V  S  M  T  *  Q  S  A  A  E  A  A  L  E  E  E  F  C  R  R  L  Q  R  R  R  W  F  D  I  V  A  H  R  R  G  S  L  I  N  L  L  L  L  Q  V  I  L  :  F  Q  W  G  E  E  A  I  T  Q  K  A  V  E  I  V  A  G  E  *  Q  G  *  T  L  S  S  A  S  Q  R  K  K  L  F  L  K  *  Q  R  K  M  R  I  L  K  G  P  V  *  P  M  A  T  E  S  Q  H  I  L  M  P  V  Q  V  V  S  R  W  V  L  G  K  I  T  T  L  *  C  S  L  S  H  L  A  N  D  P  S  R  L  A  M  T  L  S  M  G  S  M  T  G  K  L  S :   F  S  L  A  C  L  R  Q  L  *  K  *  H  L  W  I  D  C  C  T  S  P  R  I  L  F  L  A  K  F  V  P  S  V  V  V  L  L  I  L  A  A  L  Q  K  G :   R  E  E  P  E  L  V  G  N  *  R  S  Y  K  I  L  F  Q  T  W  T  S :   K  R  A  M  L  T  C  W  I  *  Q  C  S  I  F  E  P  F  K  I  R  F  R :   I  *  I  Q  N  L  K  T  A  N  V  D  V  G  N  Q  V  N  N  K  M  G  G  S  T  L  A  E  D  *  L  K  R  I  F  V  T  I  I  L  L  L  R  N  S  N  L  Y  I  W  K  *  I  S  Y  *  F  F  K  A  K  K  *  T  L  F  V  F  F  S  F  P  F  S  S  *  K  T  T  Y  M  I  V  L  D  Y  F  *  F  S  F  F  I  *  H  L  H  F  *  F  I  F  E  F  I  L  L  E  D  H  K  S  *  L  M  M  L  Y   : K  N  *  R  *  *  T </second_frame>
            <third_frame>   S  P  H  P  P  T  S  L  S  I  N  F  S  T  S  K  S  *  Q  S  N  S  N  K  L  S  N  V  S  I  I  N  I  F  F  I  T  R  F  N  E  P  H  Q  H  H  R  W  R  R  R  R  W  S  H  S  L  R  F  S  S  G  I  I  F  N  Y  S  S  *  S  R  R  *  R  *  S  R  V  R  F  S  R  I  S  S  L  T  P  W  S  F  T  V  F  S  V  Q  S  S  I  Y  F  V  K  F  R  I  Y  K  *  S  E  G  T  I  E  F  T  E  V  N  W  F  Q  *  L  N  N  R  R  R  K  R  R  W  R  R  S  F  A  D  D  F  N  D  A  V  G  S  T  *  *  L  T  G  E  V  P  *  S  T  C  Y  C  C  R  *  Y  C :   F  N  G  E  R  K  L  *  P  K  R  R  W  R  *  W  P  G  N  N  K  A  E  L  S  A  Q  L  H  N  A  R  S  S  F  S  N  S  R  G  K  *  G  Y  *  R  D  Q  Y  S  Q  W  P  Q  K  V  N  T  F  L  C  Q  C  K  *  F  R  D  G  F  L  G  R  *  Q  L  Y  N  V  L  C  H  T  *  Q  T  I  Q  A  D  *  Q  *  H  C  Q  W  A  R  *  R  G  N  S   : V  S  V  W  L  V  S  D  S  S  R  N  S  I  Y  G  *  I  A  A  H  P  R  G  F  C  S  L  Q  N  S  C  Q  A  W  L  C  Y  S  S  S  Q  H  C  R  K   : G  E  K  N  Q  N  *  W  E  T  K  E  V  T  R  S  C  S  K  H  G  Q   : A  N  E  L  C  *  H  A  G  S  S  S  A  A  Y  S  N  P  S  R  S  G  S   : E  S  E  Y  R  T  *  K  L  Q  M  W  M  *  E  I  K  S  I  T  K  W  E  E  A  L  *  L  K  I  D  L  K  G  F  L  S  P  L  F  C  F  L  E  T  Q  I  C  T  Y  G  S  K  F  H  T  S  F  L  K  L  K  S  E  L  S  L  F  F  F  L  F  P  F  P  V  R  R  L  R  I  *  L  F  W  I  I  S  S  F  L  F  S  S  N  I  Y  I  F  N  L  F  L  S  L  F  C  L  K  I  I  K  A  N  *  *  C  C  T  :  K  I  E  D  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41697" stop="42207"/>
                    <exon start="47176" stop="47489"/>
                    <exon start="48142" stop="48279"/>
                    <exon start="48625" stop="48690"/>
                    <exon start="48821" stop="48889"/>
                    <exon start="49220" stop="49276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHPTHPPLSLLTSQPPNLNNPIRTNYQMYPSSTSSSSQGSMSHTSTTAGGAGGGLTRYGSAPGSFLTTAVEAVVNGNHEFASHGSHHSHLGPSRFFQSNLASTSLNSESTSKAKEQSNLQRSIGFNDLTIGGGSGAGGGVLPTTSTTPLVRHSSSPARFLNQLATAAGDTVSMGRGSYNPKGGGDSGRGITRLNSQLSFTTQEALSQIAEENEDIEGTSIANGHRKSTHSYASASSFAMGSWEDNNSIMFSVTPSKRSKQISNDIVNGLDDGETQFQFGLSQTALEIASMDRLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIRTLQDQVQNLNTELENCKCGCRKSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41697" e_stop="42207"/>
            <exon e_start="47176" e_stop="47489"/>
            <exon e_start="47829" e_stop="48131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41697" e_stop="42207" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="42208" i_stop="47175" i_length="4968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47176" e_stop="47489" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="47490" i_stop="47828" i_length="339"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="47829" e_stop="48131" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41697" stop="42104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41792" stop="42207"/>
              <exon start="47176" stop="47311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42142" stop="42207"/>
              <exon start="47176" stop="47489"/>
              <exon start="47829" stop="48131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCACCCCACCCACCCACCTCTCTCTCTATTAACTTCTCAACCTCCAAATCTTAACAATCCAATTCGAACAAATTATCAAATGTATCCATCATCAACATCTTCTTCATCACAAGGTTCAATGAGCCACACCAGCACCACCGCTGGCGGCGCCGGCGGTGGTCTCACTCGCTACGGTTCAGCTCCGGGATCATTTTTAACTACAGCAGTTGAAGCCGTCGTTAACGGTAATCACGAGTTCGCTTCTCACGGATCTCATCACTCACACCTTGGTCCTTCACGGTTTTTTCAGTCCAATCTAGCATCTACTTCGTTAAATTCCGAATCTACAAGTAAAGCGAAGGAACAATCGAATTTACAGAGGTCAATTGGTTTCAATGACTTAACAATCGGCGGCGGAAGCGGCGCTGGAGGAGGAGTTTTGCCGACGACTTCAACGACGCCGTTGGTTCGACATAGTAGCTCACCGGCGAGGTTCCTTAATCAACTTGCTACTGCTGCAGGTGATACTG : TTTCAATGGGGAGAGGAAGCTATAACCCAAAAGGCGGTGGAGATAGTGGCCGGGGAATAACAAGGCTGAACTCTCAGCTCAGCTTCACAACGCAAGAAGCTCTTTCTCAAATAGCAGAGGAAAATGAGGATATTGAAGGGACCAGTATAGCCAATGGCCACAGAAAGTCAACACATTCTTATGCCAGTGCAAGTAGTTTCGCGATGGGTTCTTGGGAAGATAACAACTCTATAATGTTCTCTGTCACACCTAGCAAACGATCCAAGCAGATTAGCAATGACATTGTCAATGGGCTCGATGACGGGGAAACTCAG : CTAATATGAACTTGAAGGTCACTATCAGAAAACACATAAACCTTCACCGTTTGACATCTGTGTTTTCAACATGTAAACGGCGATAGATATACTTCCTTTACATTTTTCCCCTTAACAACCTTACAACTACATTCTGTGTATGTGTTTCTTTTCTTTCTGCAGAAGTATGTAAAATAAAATAGACAAAATAATCCATGTTGGCATACTCAATCATGTTTCTCGTGTGTAACTCACACAAAAATTGATGAAAACTGCATTTTTATTACTTGTGGGAGGATGAACTGATGTTTTTCGATTTTTGAA</gDNA_template>
            <first_frame> P  H  P  T  H  P  P  L  S  L  L  T  S  Q  P  P  N  L  N  N  P  I  R  T  N  Y  Q  M  Y  P  S  S  T  S  S  S  S  Q  G  S  M  S  H  T  S  T  T  A  G  G  A  G  G  G  L  T  R  Y  G  S  A  P  G  S  F  L  T  T  A  V  E  A  V  V  N  G  N  H  E  F  A  S  H  G  S  H  H  S  H  L  G  P  S  R  F  F  Q  S  N  L  A  S  T  S  L  N  S  E  S  T  S  K  A  K  E  Q  S  N  L  Q  R  S  I  G  F  N  D  L  T  I  G  G  G  S  G  A  G  G  G  V  L  P  T  T  S  T  T  P  L  V  R  H  S  S  S  P  A  R  F  L  N  Q  L  A  T  A  A  G  D  T   : V  S  M  G  R  G  S  Y  N  P  K  G  G  G  D  S  G  R  G  I  T  R  L  N  S  Q  L  S  F  T  T  Q  E  A  L  S  Q  I  A  E  E  N  E  D  I  E  G  T  S  I  A  N  G  H  R  K  S  T  H  S  Y  A  S  A  S  S  F  A  M  G  S  W  E  D  N  N  S  I  M  F  S  V  T  P  S  K  R  S  K  Q  I  S  N  D  I  V  N  G  L  D  D  G  E  T  Q  :  L  I  *  T  *  R  S  L  S  E  N  T  *  T  F  T  V  *  H  L  C  F  Q  H  V  N  G  D  R  Y  T  S  F  T  F  F  P  L  T  T  L  Q  L  H  S  V  Y  V  F  L  F  F  L  Q  K  Y  V  K  *  N  R  Q  N  N  P  C  W  H  T  Q  S  C  F  S  C  V  T  H  T  K  I  D  E  N  C  I  F  I  T  C  G  R  M  N  *  C  F  S  I  F  E </first_frame>
            <second_frame>  L  T  P  P  T  H  L  S  L  Y  *  L  L  N  L  Q  I  L  T  I  Q  F  E  Q  I  I  K  C  I  H  H  Q  H  L  L  H  H  K  V  Q  *  A  T  P  A  P  P  L  A  A  P  A  V  V  S  L  A  T  V  Q  L  R  D  H  F  *  L  Q  Q  L  K  P  S  L  T  V  I  T  S  S  L  L  T  D  L  I  T  H  T  L  V  L  H  G  F  F  S  P  I  *  H  L  L  R  *  I  P  N  L  Q  V  K  R  R  N  N  R  I  Y  R  G  Q  L  V  S  M  T  *  Q  S  A  A  E  A  A  L  E  E  E  F  C  R  R  L  Q  R  R  R  W  F  D  I  V  A  H  R  R  G  S  L  I  N  L  L  L  L  Q  V  I  L  :  F  Q  W  G  E  E  A  I  T  Q  K  A  V  E  I  V  A  G  E  *  Q  G  *  T  L  S  S  A  S  Q  R  K  K  L  F  L  K  *  Q  R  K  M  R  I  L  K  G  P  V  *  P  M  A  T  E  S  Q  H  I  L  M  P  V  Q  V  V  S  R  W  V  L  G  K  I  T  T  L  *  C  S  L  S  H  L  A  N  D  P  S  R  L  A  M  T  L  S  M  G  S  M  T  G  K  L  S :   *  Y  E  L  E  G  H  Y  Q  K  T  H  K  P  S  P  F  D  I  C  V  F  N  M  *  T  A  I  D  I  L  P  L  H  F  S  P  *  Q  P  Y  N  Y  I  L  C  M  C  F  F  S  F  C  R  S  M  *  N  K  I  D  K  I  I  H  V  G  I  L  N  H  V  S  R  V  *  L  T  Q  K  L  M  K  T  A  F  L  L  L  V  G  G  *  T  D  V  F  R  F  L   </second_frame>
            <third_frame>   S  P  H  P  P  T  S  L  S  I  N  F  S  T  S  K  S  *  Q  S  N  S  N  K  L  S  N  V  S  I  I  N  I  F  F  I  T  R  F  N  E  P  H  Q  H  H  R  W  R  R  R  R  W  S  H  S  L  R  F  S  S  G  I  I  F  N  Y  S  S  *  S  R  R  *  R  *  S  R  V  R  F  S  R  I  S  S  L  T  P  W  S  F  T  V  F  S  V  Q  S  S  I  Y  F  V  K  F  R  I  Y  K  *  S  E  G  T  I  E  F  T  E  V  N  W  F  Q  *  L  N  N  R  R  R  K  R  R  W  R  R  S  F  A  D  D  F  N  D  A  V  G  S  T  *  *  L  T  G  E  V  P  *  S  T  C  Y  C  C  R  *  Y  C :   F  N  G  E  R  K  L  *  P  K  R  R  W  R  *  W  P  G  N  N  K  A  E  L  S  A  Q  L  H  N  A  R  S  S  F  S  N  S  R  G  K  *  G  Y  *  R  D  Q  Y  S  Q  W  P  Q  K  V  N  T  F  L  C  Q  C  K  *  F  R  D  G  F  L  G  R  *  Q  L  Y  N  V  L  C  H  T  *  Q  T  I  Q  A  D  *  Q  *  H  C  Q  W  A  R  *  R  G  N  S   : A  N  M  N  L  K  V  T  I  R  K  H  I  N  L  H  R  L  T  S  V  F  S  T  C  K  R  R  *  I  Y  F  L  Y  I  F  P  L  N  N  L  T  T  T  F  C  V  C  V  S  F  L  S  A  E  V  C  K  I  K  *  T  K  *  S  M  L  A  Y  S  I  M  F  L  V  C  N  S  H  K  N  *  *  K  L  H  F  Y  Y  L  W  E  D  E  L  M  F  F  D  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41697" stop="42207"/>
                    <exon start="47176" stop="47489"/>
                    <exon start="47829" stop="47837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHPTHPPLSLLTSQPPNLNNPIRTNYQMYPSSTSSSSQGSMSHTSTTAGGAGGGLTRYGSAPGSFLTTAVEAVVNGNHEFASHGSHHSHLGPSRFFQSNLASTSLNSESTSKAKEQSNLQRSIGFNDLTIGGGSGAGGGVLPTTSTTPLVRHSSSPARFLNQLATAAGDTVSMGRGSYNPKGGGDSGRGITRLNSQLSFTTQEALSQIAEENEDIEGTSIANGHRKSTHSYASASSFAMGSWEDNNSIMFSVTPSKRSKQISNDIVNGLDDGETQLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50202" e_stop="50450"/>
            <exon e_start="50528" e_stop="50560"/>
            <exon e_start="50714" e_stop="51067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.794" acc_prob="0.941" e_score="0.948"/>
          <exon-intron don_prob="0.000" acc_prob="0.281" e_score="0.515"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="50202" e_stop="50450" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.794" acc_prob="0.941">
            <gDNA_intron_boundary i_start="50451" i_stop="50527" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.515">
            <gDNA_exon_boundary e_start="50528" e_stop="50560" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.281">
            <gDNA_intron_boundary i_start="50561" i_stop="50713" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="50714" e_stop="51067" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50202" stop="50450"/>
              <exon start="50528" stop="50560"/>
              <exon start="50714" stop="51067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAA : GAAGCCAGTTTCTTTGTTGACGAAAACTGAAAT : GAAGTCTTGTACGGAAGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTTCTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTTAAGAAGGTTAGAATTACATTTGTTGGAATTCTTTGAAGGTAAAATCAGTTTAAGTTACAACCATGAGTTGAATGATTCTGATCTGTCGAAATATATGGATT</gDNA_template>
            <first_frame> E  L  F  L  L  P  S  N  I  Q  T  F  I  H  F  I  S  L  N  L  F  S  N  F  S  *  Y  V  N  S  E  N  I  S  L  L  K  S  E  S  E  N  Y  D  S  H  F  Y  P  I  M  F  V  S  S  L  D  E  V  S  F  Q  F  Y  L  *  L  M  N  Q  K  I  E  D  N  K  Q  A  *  E  K  T  K  :  E  A  S  F  F  V  D  E  N  *  N  :  E  V  L  Y  G  R  W  L  K  M  K  L  K  I  C  *  I  T  *  E  G  S  R  V  E  V  I  W  I  G  S  R  S  I  E  L  R  N  L  K  W  C  S  S  I  I  M  F  F  C  L  I  P  S  S  N  S  K  R  R  T  N  G  L  R  K  W  F  S  G  Y  W  M  E  F  R  M  N  V  K  L  T  L  I  *  E  G  *  N  Y  I  C  W  N  S  L  K  V  K  S  V  *  V  T  T  M  S  *  M  I  L  I  C  R  N  I  W  I </first_frame>
            <second_frame>  S  S  S  F  F  L  Q  T  F  K  P  S  S  I  S  F  H  *  T  F  S  L  T  S  P  N  T  *  T  R  K  I  Y  L  C  *  N  P  N  L  R  T  M  T  L  I  F  T  P  *  C  L  F  L  L  L  M  K  S  A  F  N  F  I  Y  D  *  *  I  R  K  L  K  I  I  N  R  H  K  R  R  Q  K :   K  P  V  S  L  L  T  K  T  E  M :   K  S  C  T  E  D  G  S  K  *  N  *  R  Y  V  R  S  P  E  K  D  Q  E  W  R  *  S  G  *  G  Q  D  Q  S  N  *  E  T  *  N  G  V  Q  V  S  S  C  S  F  A  *  F  H  R  Q  T  Q  K  E  G  Q  M  D  C  E  N  G  S  V  G  I  G  W  N  S  G  *  M  *  N  *  P  *  F  K  K  V  R  I  T  F  V  G  I  L  *  R  *  N  Q  F  K  L  Q  P  *  V  E  *  F  *  S  V  E  I  Y  G   </second_frame>
            <third_frame>   A  L  P  S  S  F  K  H  S  N  L  H  P  F  H  F  I  K  P  F  L  *  L  L  L  I  R  E  L  G  K  Y  I  F  V  E  I  R  I  *  E  L  *  L  S  F  L  P  H  N  V  C  F  F  S  *  *  S  Q  L  S  I  L  F  M  I  D  E  S  E  N  *  R  *  *  T  G  I  R  E  D  K   : R  S  Q  F  L  C  *  R  K  L  K   : *  S  L  V  R  K  M  A  Q  N  E  I  E  D  M  L  D  H  L  R  R  I  K  S  G  G  N  L  D  R  V  K  I  N  R  I  E  K  L  E  M  V  F  K  Y  H  H  V  L  L  P  D  S  I  V  K  L  K  K  K  D  K  W  I  A  K  M  V  Q  W  V  L  D  G  I  P  D  E  C  K  T  N  L  N  L  R  R  L  E  L  H  L  L  E  F  F  E  G  K  I  S  L  S  Y  N  H  E  L  N  D  S  D  L  S  K  Y  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50716" stop="51066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVRKMAQNEIEDMLDHLRRIKSGGNLDRVKINRIEKLEMVFKYHHVLLPDSIVKLKKKDKWIAKMVQWVLDGIPDECKTNLNLRRLELHLLEFFEGKISLSYNHELNDSDLSKYMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50183" e_stop="50461"/>
            <exon e_start="50714" e_stop="50966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.281" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="50183" e_stop="50461" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.281">
            <gDNA_intron_boundary i_start="50462" i_stop="50713" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50714" e_stop="50966" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50183" stop="50461"/>
              <exon start="50714" stop="50966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAGAGAGAGAGGGAGCTCTTCCTTCTTCCTTCAAACATTCAAACCTTCATCCATTTCATTTCATTAAACCTTTTCTCTAACTTCTCCTAATACGTGAACTCGGAAAATATATCTTTGTTGAAATCCGAATCTGAGAACTATGACTCTCATTTTTACCCCATAATGTTTGTTTCTTCTCTTGATGAAGTCAGCTTTCAATTTTATTTATGATTGATGAATCAGAAAATTGAAGATAATAAACAGGCATAAGAGAAGACAAAAGTTAACTAACT : GAAGTCTTGTACGGAAGATGGCTCAAAATGAAATTGAAGATATGTTAGATCACCTGAGAAGGATCAAGAGTGGAGGTAATCTGGATAGGGTCAAGATCAATCGAATTGAGAAACTTGAAATGGTGTTCAAGTATCATCATGTTCTTTTGCCTGATTCCATCGTCAAACTCAAAAAGAAGGACAAATGGATTGCGAAAATGGTTCAGTGGGTATTGGATGGAATTCCGGATGAATGTAAAACTAACCTTAATTT</gDNA_template>
            <first_frame> R  E  R  E  R  E  G  A  L  P  S  S  F  K  H  S  N  L  H  P  F  H  F  I  K  P  F  L  *  L  L  L  I  R  E  L  G  K  Y  I  F  V  E  I  R  I  *  E  L  *  L  S  F  L  P  H  N  V  C  F  F  S  *  *  S  Q  L  S  I  L  F  M  I  D  E  S  E  N  *  R  *  *  T  G  I  R  E  D  K  S  *  L  T  :  E  V  L  Y  G  R  W  L  K  M  K  L  K  I  C  *  I  T  *  E  G  S  R  V  E  V  I  W  I  G  S  R  S  I  E  L  R  N  L  K  W  C  S  S  I  I  M  F  F  C  L  I  P  S  S  N  S  K  R  R  T  N  G  L  R  K  W  F  S  G  Y  W  M  E  F  R  M  N  V  K  L  T  L  I  </first_frame>
            <second_frame>  E  R  E  R  E  R  E  L  F  L  L  P  S  N  I  Q  T  F  I  H  F  I  S  L  N  L  F  S  N  F  S  *  Y  V  N  S  E  N  I  S  L  L  K  S  E  S  E  N  Y  D  S  H  F  Y  P  I  M  F  V  S  S  L  D  E  V  S  F  Q  F  Y  L  *  L  M  N  Q  K  I  E  D  N  K  Q  A  *  E  K  T  K  V  N  *  L :   K  S  C  T  E  D  G  S  K  *  N  *  R  Y  V  R  S  P  E  K  D  Q  E  W  R  *  S  G  *  G  Q  D  Q  S  N  *  E  T  *  N  G  V  Q  V  S  S  C  S  F  A  *  F  H  R  Q  T  Q  K  E  G  Q  M  D  C  E  N  G  S  V  G  I  G  W  N  S  G  *  M  *  N  *  P  *  F </second_frame>
            <third_frame>   R  E  R  E  R  G  S  S  S  F  F  L  Q  T  F  K  P  S  S  I  S  F  H  *  T  F  S  L  T  S  P  N  T  *  T  R  K  I  Y  L  C  *  N  P  N  L  R  T  M  T  L  I  F  T  P  *  C  L  F  L  L  L  M  K  S  A  F  N  F  I  Y  D  *  *  I  R  K  L  K  I  I  N  R  H  K  R  R  Q  K  L  T  N   : *  S  L  V  R  K  M  A  Q  N  E  I  E  D  M  L  D  H  L  R  R  I  K  S  G  G  N  L  D  R  V  K  I  N  R  I  E  K  L  E  M  V  F  K  Y  H  H  V  L  L  P  D  S  I  V  K  L  K  K  K  D  K  W  I  A  K  M  V  Q  W  V  L  D  G  I  P  D  E  C  K  T  N  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50716" stop="50964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVRKMAQNEIEDMLDHLRRIKSGGNLDRVKINRIEKLEMVFKYHHVLLPDSIVKLKKKDKWIAKMVQWVLDGIPDECKTNLN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50771" stop="50965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSRVEVIWIGSRSIELRNLKWCSSIIMFFCLIPSSNSKRRTNGLRKWFSGYWMEFRMNVKLTLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="51467" PGL_stop="52260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51467" e_stop="52260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51467" e_stop="52260" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51467" stop="52260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51468" stop="51844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGATTATCTTAGTAGAGCTGGAAATGAAGAAAATTTTTCTCGGTGAACTAAAGGCTTCCAAGTTTACTCAATCAAGAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCTCATCATCTCCATAGTCTGTTGATGTATCTTAGAAACAAAAAGCTTGAGAAATTTCCTAATAATAACTCTCCTCAAAATATTGATATAGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTCGGAAATCATGTAATTAATGGTAACTGGTTGAATGAAGTTATGGAAAAGGTTGGAGCTATAGCGGGTGATGTTCTATATGTAATTCAAAAGCTTCTTCCTAGCTCTATAAAAAAAGATGACAATAGCAAAATAAGTCTTTGCTCAATACAGATATGGGAGAAAACTAAAGATCTGAAGGCACAAGTGGAGACGCACTATAAATCCTTAAAATTCACTCCATCGCAATTCCCCACTGTTGGTGGATGGAGCTTTCTGGATTCTCTTATGCGGAAACTGAAAGAGATGTCGAAATCTAAATCTTGTTTAGATTTCCTGATGAAACCTCTTTTGGGGAATTTGGAGAAAGAGCTATCAGCTCTTACATCCATTTTAGAGAAGGATCTGTCATCTTTATCATCCATTTTAAGCGATGTCGCCAAGGTGCACCATGAACATGAAATTCTTCAAGATCTTCACAGGCGTACTATCAATTGGGCATATGAAGCGGAAGTTGCGATTGACTCTATTCTTGCTCAGTATAATGTCTTTTGGCATATTTTTTGCTCACTTCCT</gDNA_template>
            <first_frame> S  *  L  S  *  *  S  W  K  *  R  K  F  F  S  V  N  *  R  L  P  S  L  L  N  Q  E  L  S  R  T  R  N  Y  Q  K  D  F  L  I  I  S  I  V  C  *  C  I  L  E  T  K  S  L  R  N  F  L  I  I  T  L  L  K  I  L  I  *  Q  *  S  S  C  W  F  S  L  M  L  M  S  E  I  M  *  L  M  V  T  G  *  M  K  L  W  K  R  L  E  L  *  R  V  M  F  Y  M  *  F  K  S  F  F  L  A  L  *  K  K  M  T  I  A  K  *  V  F  A  Q  Y  R  Y  G  R  K  L  K  I  *  R  H  K  W  R  R  T  I  N  P  *  N  S  L  H  R  N  S  P  L  L  V  D  G  A  F  W  I  L  L  C  G  N  *  K  R  C  R  N  L  N  L  V  *  I  S  *  *  N  L  F  W  G  I  W  R  K  S  Y  Q  L  L  H  P  F  *  R  R  I  C  H  L  Y  H  P  F  *  A  M  S  P  R  C  T  M  N  M  K  F  F  K  I  F  T  G  V  L  S  I  G  H  M  K  R  K  L  R  L  T  L  F  L  L  S  I  M  S  F  G  I  F  F  A  H  F   </first_frame>
            <second_frame>  L  D  Y  L  S  R  A  G  N  E  E  N  F  S  R  *  T  K  G  F  Q  V  Y  S  I  K  N  F  Q  G  Q  E  I  T  K  R  I  F  S  S  S  P  *  S  V  D  V  S  *  K  Q  K  A  *  E  I  S  *  *  *  L  S  S  K  Y  *  Y  S  N  R  V  L  V  G  F  P  *  C  *  C  R  K  S  C  N  *  W  *  L  V  E  *  S  Y  G  K  G  W  S  Y  S  G  *  C  S  I  C  N  S  K  A  S  S  *  L  Y  K  K  R  *  Q  *  Q  N  K  S  L  L  N  T  D  M  G  E  N  *  R  S  E  G  T  S  G  D  A  L  *  I  L  K  I  H  S  I  A  I  P  H  C  W  W  M  E  L  S  G  F  S  Y  A  E  T  E  R  D  V  E  I  *  I  L  F  R  F  P  D  E  T  S  F  G  E  F  G  E  R  A  I  S  S  Y  I  H  F  R  E  G  S  V  I  F  I  I  H  F  K  R  C  R  Q  G  A  P  *  T  *  N  S  S  R  S  S  Q  A  Y  Y  Q  L  G  I  *  S  G  S  C  D  *  L  Y  S  C  S  V  *  C  L  L  A  Y  F  L  L  T  S  </second_frame>
            <third_frame>   L  I  I  L  V  E  L  E  M  K  K  I  F  L  G  E  L  K  A  S  K  F  T  Q  S  R  T  F  K  D  K  K  L  P  K  G  F  S  H  H  L  H  S  L  L  M  Y  L  R  N  K  K  L  E  K  F  P  N  N  N  S  P  Q  N  I  D  I  A  I  E  F  L  L  V  F  L  D  A  D  V  G  N  H  V  I  N  G  N  W  L  N  E  V  M  E  K  V  G  A  I  A  G  D  V  L  Y  V  I  Q  K  L  L  P  S  S  I  K  K  D  D  N  S  K  I  S  L  C  S  I  Q  I  W  E  K  T  K  D  L  K  A  Q  V  E  T  H  Y  K  S  L  K  F  T  P  S  Q  F  P  T  V  G  G  W  S  F  L  D  S  L  M  R  K  L  K  E  M  S  K  S  K  S  C  L  D  F  L  M  K  P  L  L  G  N  L  E  K  E  L  S  A  L  T  S  I  L  E  K  D  L  S  S  L  S  S  I  L  S  D  V  A  K  V  H  H  E  H  E  I  L  Q  D  L  H  R  R  T  I  N  W  A  Y  E  A  E  V  A  I  D  S  I  L  A  Q  Y  N  V  F  W  H  I  F  C  S  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51469" stop="52260"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILVELEMKKIFLGELKASKFTQSRTFKDKKLPKGFSHHLHSLLMYLRNKKLEKFPNNNSPQNIDIAIEFLLVFLDADVGNHVINGNWLNEVMEKVGAIAGDVLYVIQKLLPSSIKKDDNSKISLCSIQIWEKTKDLKAQVETHYKSLKFTPSQFPTVGGWSFLDSLMRKLKEMSKSKSCLDFLMKPLLGNLEKELSALTSILEKDLSSLSSILSDVAKVHHEHEILQDLHRRTINWAYEAEVAIDSILAQYNVFWHIFCSLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52373" PGL_stop="53485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52373" e_stop="53485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52373" e_stop="53485" e_length="1113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52373" stop="52877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52875" stop="53175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52916" stop="53365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATATCAATCCAGTGACTGATGAGGATATAGTGGGTTTTGGGAATGACATAGAAAAAATGTTTCAGTATCTGATTAGAGGTACAAATGATCTAGACGTTGTCCCAATTGTAGGCATGGGTGGACAAGGGAAAACGACAGTTGCTAGAAAGGTGTACAATAGTGACAACATTGTTTCTCATTTTGATGTTCGAGCATGGTGCATCGTTTCCCAAACATATAACCGGAGAAAGCTATTACAAGACATTTTGAGTCAAGTTACCGGTTCCAAGGACAAGGGGTATGAGGATGATATCCTTGCTGATGAGTTGAGGAAAAGCTTAATGGGCAAGAGATATCTCATTGTCTTGGATGATATGTGGGATTGTATGGCATGGGATGACTTAAGGCTTTCCTTTCCAGATTCCGGAAATAGAAGCAGAATAGTAGTAACAACTCGACTTGAGAAAGTGGGCGAACAAGTCAAGTGCCATACTGATCCTTATTCTCTTCCGTTCCTCACAAAAGAAGAGAGTTGTGAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTTCCCGCCTGAACTACAAGATGTGAGTCGAGCAGTTGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATTCTTTATTTGACCACCTTAATCGTGAGTCGGAAGAATATAGTCTTTCAACTATGCAGTTGAGTTACTATAACTTAACCGACTGTTTAAAGCCTTGTCTTCTTTATATGGGGATGTTTCAGGAGGATGCAATAATTCGAGTATCTGAATTGATAAGTCTATGGATTGCGGAAGGATTTGTGCAGAGCATTGAATCTGGGAGATTGTTGATGGAAGAGGCAGCTGAAGGTTACTTGATGGATCTCATTCAGAGTAACGTGGTAATGGTTTCAAATAGAAGGTATAATGGTAAGGTCAAATACTGTCAGGTTCATGACGTAGTGCTTCACTTTTGCTTGGAGAAGAGTCTAGAAGAAAAGTTTATGTTGGCAGTGAAGGGGCATGATAGCCAGTTTCAACCTTTTGAATGGAAGGAAAACCGAGTGA</gDNA_template>
            <first_frame> D  I  S  I  Q  *  L  M  R  I  *  W  V  L  G  M  T  *  K  K  C  F  S  I  *  L  E  V  Q  M  I  *  T  L  S  Q  L  *  A  W  V  D  K  G  K  R  Q  L  L  E  R  C  T  I  V  T  T  L  F  L  I  L  M  F  E  H  G  A  S  F  P  K  H  I  T  G  E  S  Y  Y  K  T  F  *  V  K  L  P  V  P  R  T  R  G  M  R  M  I  S  L  L  M  S  *  G  K  A  *  W  A  R  D  I  S  L  S  W  M  I  C  G  I  V  W  H  G  M  T  *  G  F  P  F  Q  I  P  E  I  E  A  E  *  *  *  Q  L  D  L  R  K  W  A  N  K  S  S  A  I  L  I  L  I  L  F  R  S  S  Q  K  K  R  V  V  N  C  C  R  K  K  C  F  K  R  K  I  S  R  L  N  Y  K  M  *  V  E  Q  L  Q  K  N  A  K  D  C  P  *  W  L  S  W  *  L  E  *  S  K  K  G  K  W  K  N  L  G  G  M  R  *  K  I  L  Y  L  T  T  L  I  V  S  R  K  N  I  V  F  Q  L  C  S  *  V  T  I  T  *  P  T  V  *  S  L  V  F  F  I  W  G  C  F  R  R  M  Q  *  F  E  Y  L  N  *  *  V  Y  G  L  R  K  D  L  C  R  A  L  N  L  G  D  C  *  W  K  R  Q  L  K  V  T  *  W  I  S  F  R  V  T  W  *  W  F  Q  I  E  G  I  M  V  R  S  N  T  V  R  F  M  T  *  C  F  T  F  A  W  R  R  V  *  K  K  S  L  C  W  Q  *  R  G  M  I  A  S  F  N  L  L  N  G  R  K  T  E  * </first_frame>
            <second_frame>  T  Y  Q  S  S  D  *  *  G  Y  S  G  F  W  E  *  H  R  K  N  V  S  V  S  D  *  R  Y  K  *  S  R  R  C  P  N  C  R  H  G  W  T  R  E  N  D  S  C  *  K  G  V  Q  *  *  Q  H  C  F  S  F  *  C  S  S  M  V  H  R  F  P  N  I  *  P  E  K  A  I  T  R  H  F  E  S  S  Y  R  F  Q  G  Q  G  V  *  G  *  Y  P  C  *  *  V  E  E  K  L  N  G  Q  E  I  S  H  C  L  G  *  Y  V  G  L  Y  G  M  G  *  L  K  A  F  L  S  R  F  R  K  *  K  Q  N  S  S  N  N  S  T  *  E  S  G  R  T  S  Q  V  P  Y  *  S  L  F  S  S  V  P  H  K  R  R  E  L  *  I  V  A  E  K  S  V  S  K  G  R  F  P  A  *  T  T  R  C  E  S  S  S  C  R  K  M  Q  R  T  A  P  S  G  C  L  G  S  W  N  N  Q  K  K  E  N  G  R  I  L  V  E  *  G  E  R  F  F  I  *  P  P  *  S  *  V  G  R  I  *  S  F  N  Y  A  V  E  L  L  *  L  N  R  L  F  K  A  L  S  S  L  Y  G  D  V  S  G  G  C  N  N  S  S  I  *  I  D  K  S  M  D  C  G  R  I  C  A  E  H  *  I  W  E  I  V  D  G  R  G  S  *  R  L  L  D  G  S  H  S  E  *  R  G  N  G  F  K  *  K  V  *  W  *  G  Q  I  L  S  G  S  *  R  S  A  S  L  L  L  G  E  E  S  R  R  K  V  Y  V  G  S  E  G  A  *  *  P  V  S  T  F  *  M  E  G  K  P  S   </second_frame>
            <third_frame>   H  I  N  P  V  T  D  E  D  I  V  G  F  G  N  D  I  E  K  M  F  Q  Y  L  I  R  G  T  N  D  L  D  V  V  P  I  V  G  M  G  G  Q  G  K  T  T  V  A  R  K  V  Y  N  S  D  N  I  V  S  H  F  D  V  R  A  W  C  I  V  S  Q  T  Y  N  R  R  K  L  L  Q  D  I  L  S  Q  V  T  G  S  K  D  K  G  Y  E  D  D  I  L  A  D  E  L  R  K  S  L  M  G  K  R  Y  L  I  V  L  D  D  M  W  D  C  M  A  W  D  D  L  R  L  S  F  P  D  S  G  N  R  S  R  I  V  V  T  T  R  L  E  K  V  G  E  Q  V  K  C  H  T  D  P  Y  S  L  P  F  L  T  K  E  E  S  C  E  L  L  Q  K  K  V  F  Q  K  E  D  F  P  P  E  L  Q  D  V  S  R  A  V  A  E  K  C  K  G  L  P  L  V  V  V  L  V  A  G  I  I  K  K  R  K  M  E  E  S  W  W  N  E  V  K  D  S  L  F  D  H  L  N  R  E  S  E  E  Y  S  L  S  T  M  Q  L  S  Y  Y  N  L  T  D  C  L  K  P  C  L  L  Y  M  G  M  F  Q  E  D  A  I  I  R  V  S  E  L  I  S  L  W  I  A  E  G  F  V  Q  S  I  E  S  G  R  L  L  M  E  E  A  A  E  G  Y  L  M  D  L  I  Q  S  N  V  V  M  V  S  N  R  R  Y  N  G  K  V  K  Y  C  Q  V  H  D  V  V  L  H  F  C  L  E  K  S  L  E  E  K  F  M  L  A  V  K  G  H  D  S  Q  F  Q  P  F  E  W  K  E  N  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52375" stop="53484"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HINPVTDEDIVGFGNDIEKMFQYLIRGTNDLDVVPIVGMGGQGKTTVARKVYNSDNIVSHFDVRAWCIVSQTYNRRKLLQDILSQVTGSKDKGYEDDILADELRKSLMGKRYLIVLDDMWDCMAWDDLRLSFPDSGNRSRIVVTTRLEKVGEQVKCHTDPYSLPFLTKEESCELLQKKVFQKEDFPPELQDVSRAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDSLFDHLNRESEEYSLSTMQLSYYNLTDCLKPCLLYMGMFQEDAIIRVSELISLWIAEGFVQSIESGRLLMEEAAEGYLMDLIQSNVVMVSNRRYNGKVKYCQVHDVVLHFCLEKSLEEKFMLAVKGHDSQFQPFEWKENRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="53819" PGL_stop="55160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53819" e_stop="54558"/>
            <exon e_start="54637" e_stop="54669"/>
            <exon e_start="54765" e_stop="55036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53819" e_stop="54558" e_length="740"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54637" e_stop="54669" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.979">
            <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="54765" e_stop="55036" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53819" stop="54379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53989" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="54803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53989" stop="54501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54066" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="55036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54095" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="54781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54405" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="55032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTAAATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTACAGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA : GGATGGTAGGGAATATAATTCGAGATGAAACAT : CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGTGTAT</gDNA_template>
            <first_frame> Q  R  L  F  G  R  W  K  N  *  G  M  L  R  F  G  M  L  N  L  I  W  K  R  I  I  R  D  P  P  N  W  K  I  *  G  Y  Y  S  M  *  N  F  Q  L  M  E  G  I  G  W  I  C  Y  Q  G  G  V  Q  I  F  K  N  C  T  S  T  W  N  I  G  A  V  I  I  R  Q  I  Y  F  V  S  H  *  R  I  L  L  S  F  K  I  F  A  *  L  L  R  G  P  T  L  Y  L  G  Y  N  C  L  Q  I  *  T  S  W  Y  *  V  G  L  I  S  K  T  *  V  P  S  L  Q  D  Y  Q  A  W  S  I  S  N  F  V  T  P  M  N  L  F  K  S  E  I  G  A  L  E  V  S  R  S  L  N  L  S  C  *  N  W  *  T  Y  R  S  Q  G  G  M  P  Q  R  N  R  F  P  S  S  K  H  L  L  *  K  G  V  T  T  S  R  R  S  P  L  A  L  L  I  F  Q  H  *  S  R  L  S  *  L  G  A  R  T  N  L  S  R  I  Q  L  W  R  L  R  K  T  L  K  R  M  K  E  T  T  V  L  T  S  L  S  K :   D  G  R  E  Y  N  S  R  *  N  I :   K  I  T  D  R  V  A  G  E  *  Q  G  K  K  L  S  L  K  F  T  N  F  R  S  I  K  N  S  K  V  L  I  V  S  *  I  *  A  H  *  H  D  T  F  A  V  H  S  K  F  *  S  L  L  L  L  N  Y  C  N  L  W  H  L  L  K  N  F  N  H  K  H  F  F  F  N  K  S  N  M  N  D  G  L  L  I  H  Q  S  V  </first_frame>
            <second_frame>  S  V  F  L  G  D  G  K  I  K  A  C  *  D  L  G  C  *  I  *  F  G  R  G  *  S  G  I  L  R  I  G  K  F  E  D  I  T  V  C  K  I  S  N  *  W  K  G  *  G  G  Y  V  I  K  E  V  S  K  S  S  K  T  A  H  Q  L  G  I  S  G  Q  *  *  F  G  R  F  I  L  S  H  I  R  E  S  Y  S  A  S  K  S  S  P  N  C  *  E  V  Q  H  C  I  W  V  T  I  A  F  K  F  K  Q  V  G  T  K  W  G  S  Y  R  K  P  E  F  L  H  C  R  T  T  K  P  G  V  S  P  I  L  *  P  L  *  I  C  S  N  Q  R  L  V  P  W  R  Y  H  V  P  *  T  *  V  V  E  T  G  E  L  T  D  L  K  V  G  C  L  R  G  I  V  S  P  A  R  N  T  C  Y  K  K  V  *  P  P  Q  G  D  P  P  *  L  C  *  Y  S  N  T  E  A  D  *  V  D  *  V  R  E  R  I  S  Q  G  F  S  C  G  D  *  E  R  R  *  R  E  *  R  K  R  P  Y  *  P  H  Y  Q   : R  M  V  G  N  I  I  R  D  E  T   : S  K  S  Q  T  E  W  P  G  N  N  K  A  R  S  S  L  S  S  S  Q  I  F  A  A  L  K  T  Q  R  F  *  *  C  L  R  Y  K  L  I  D  M  I  L  L  L  C  T  Q  N  F  E  V  C  Y  C  *  I  I  V  I  C  G  T  Y  *  K  I  L  I  T  N  I  S  F  L  I  K  V  T  *  M  M  V  C  S  F  I  K  V  Y </second_frame>
            <third_frame>   A  S  F  W  E  M  E  K  L  R  H  V  K  I  W  D  A  K  F  D  L  E  E  D  N  Q  G  S  S  E  L  E  N  L  R  I  L  Q  Y  V  K  F  P  I  D  G  R  D  R  V  D  M  L  S  R  R  C  P  N  L  Q  K  L  H  I  N  L  E  Y  R  G  S  N  N  S  A  D  L  F  C  L  T  L  E  N  L  T  Q  L  Q  N  L  R  L  T  V  E  R  S  N  I  V  S  G  L  Q  L  P  S  N  L  N  K  L  V  L  S  G  A  H  I  E  N  L  S  S  F  I  A  G  L  P  S  L  E  Y  L  Q  F  C  D  P  Y  E  S  V  Q  I  R  D  W  C  L  G  G  I  T  F  P  K  L  K  L  L  K  L  V  N  L  P  I  S  R  W  D  A  S  E  E  S  F  P  Q  L  E  T  L  V  I  K  R  C  N  H  L  K  E  I  P  L  S  F  A  D  I  P  T  L  K  Q  I  K  L  I  R  C  E  N  E  S  L  K  D  S  A  V  E  I  K  K  D  V  E  E  N  E  G  N  D  R  I  D  L  I  I  K  :  G  W  *  G  I  *  F  E  M  K  H  :  Q  N  H  R  Q  S  G  R  G  I  T  R  Q  E  A  L  S  Q  V  H  K  F  S  Q  H  *  K  L  K  G  F  D  S  V  L  D  I  S  S  L  T  *  Y  F  C  C  A  L  K  I  L  K  F  V  I  V  E  L  L  *  F  V  A  P  I  E  K  F  *  S  Q  T  F  L  F  *  *  K  *  H  E  *  W  F  A  H  S  S  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53821" stop="54558"/>
                    <exon start="54637" stop="54645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWEMEKLRHVKIWDAKFDLEEDNQGSSELENLRILQYVKFPIDGRDRVDMLSRRCPNLQKLHINLEYRGSNNSADLFCLTLENLTQLQNLRLTVERSNIVSGLQLPSNLNKLVLSGAHIENLSSFIAGLPSLEYLQFCDPYESVQIRDWCLGGITFPKLKLLKLVNLPISRWDASEESFPQLETLVIKRCNHLKEIPLSFADIPTLKQIKLIRCENESLKDSAVEIKKDVEENEGNDRIDLIIKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53819" e_stop="54558"/>
            <exon e_start="54637" e_stop="54669"/>
            <exon e_start="54765" e_stop="55002"/>
            <exon e_start="55146" e_stop="55160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53819" e_stop="54558" e_length="740"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54637" e_stop="54669" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.979">
            <gDNA_intron_boundary i_start="54670" i_stop="54764" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="54765" e_stop="55002" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55003" i_stop="55145" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.733">
            <gDNA_exon_boundary e_start="55146" e_stop="55160" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53819" stop="54379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53989" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="54803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53989" stop="54501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54095" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="54781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54224" stop="54558"/>
              <exon start="54637" stop="54669"/>
              <exon start="54765" stop="55002"/>
              <exon start="55146" stop="55160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251865" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTAAATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTACAGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA : GGATGGTAGGGAATATAATTCGAGATGAAACAT : CAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAAC : TAACAAAATATAAAA</gDNA_template>
            <first_frame> Q  R  L  F  G  R  W  K  N  *  G  M  L  R  F  G  M  L  N  L  I  W  K  R  I  I  R  D  P  P  N  W  K  I  *  G  Y  Y  S  M  *  N  F  Q  L  M  E  G  I  G  W  I  C  Y  Q  G  G  V  Q  I  F  K  N  C  T  S  T  W  N  I  G  A  V  I  I  R  Q  I  Y  F  V  S  H  *  R  I  L  L  S  F  K  I  F  A  *  L  L  R  G  P  T  L  Y  L  G  Y  N  C  L  Q  I  *  T  S  W  Y  *  V  G  L  I  S  K  T  *  V  P  S  L  Q  D  Y  Q  A  W  S  I  S  N  F  V  T  P  M  N  L  F  K  S  E  I  G  A  L  E  V  S  R  S  L  N  L  S  C  *  N  W  *  T  Y  R  S  Q  G  G  M  P  Q  R  N  R  F  P  S  S  K  H  L  L  *  K  G  V  T  T  S  R  R  S  P  L  A  L  L  I  F  Q  H  *  S  R  L  S  *  L  G  A  R  T  N  L  S  R  I  Q  L  W  R  L  R  K  T  L  K  R  M  K  E  T  T  V  L  T  S  L  S  K :   D  G  R  E  Y  N  S  R  *  N  I :   K  I  T  D  R  V  A  G  E  *  Q  G  K  K  L  S  L  K  F  T  N  F  R  S  I  K  N  S  K  V  L  I  V  S  *  I  *  A  H  *  H  D  T  F  A  V  H  S  K  F  *  S  L  L  L  L  N  Y  C  N  L  W  H  L  L  K  N  F  N  H  K  H  F  F  F  N  K  S  N  :  *  Q  N  I  K </first_frame>
            <second_frame>  S  V  F  L  G  D  G  K  I  K  A  C  *  D  L  G  C  *  I  *  F  G  R  G  *  S  G  I  L  R  I  G  K  F  E  D  I  T  V  C  K  I  S  N  *  W  K  G  *  G  G  Y  V  I  K  E  V  S  K  S  S  K  T  A  H  Q  L  G  I  S  G  Q  *  *  F  G  R  F  I  L  S  H  I  R  E  S  Y  S  A  S  K  S  S  P  N  C  *  E  V  Q  H  C  I  W  V  T  I  A  F  K  F  K  Q  V  G  T  K  W  G  S  Y  R  K  P  E  F  L  H  C  R  T  T  K  P  G  V  S  P  I  L  *  P  L  *  I  C  S  N  Q  R  L  V  P  W  R  Y  H  V  P  *  T  *  V  V  E  T  G  E  L  T  D  L  K  V  G  C  L  R  G  I  V  S  P  A  R  N  T  C  Y  K  K  V  *  P  P  Q  G  D  P  P  *  L  C  *  Y  S  N  T  E  A  D  *  V  D  *  V  R  E  R  I  S  Q  G  F  S  C  G  D  *  E  R  R  *  R  E  *  R  K  R  P  Y  *  P  H  Y  Q   : R  M  V  G  N  I  I  R  D  E  T   : S  K  S  Q  T  E  W  P  G  N  N  K  A  R  S  S  L  S  S  S  Q  I  F  A  A  L  K  T  Q  R  F  *  *  C  L  R  Y  K  L  I  D  M  I  L  L  L  C  T  Q  N  F  E  V  C  Y  C  *  I  I  V  I  C  G  T  Y  *  K  I  L  I  T  N  I  S  F  L  I  K  V  T :   N  K  I  *   </second_frame>
            <third_frame>   A  S  F  W  E  M  E  K  L  R  H  V  K  I  W  D  A  K  F  D  L  E  E  D  N  Q  G  S  S  E  L  E  N  L  R  I  L  Q  Y  V  K  F  P  I  D  G  R  D  R  V  D  M  L  S  R  R  C  P  N  L  Q  K  L  H  I  N  L  E  Y  R  G  S  N  N  S  A  D  L  F  C  L  T  L  E  N  L  T  Q  L  Q  N  L  R  L  T  V  E  R  S  N  I  V  S  G  L  Q  L  P  S  N  L  N  K  L  V  L  S  G  A  H  I  E  N  L  S  S  F  I  A  G  L  P  S  L  E  Y  L  Q  F  C  D  P  Y  E  S  V  Q  I  R  D  W  C  L  G  G  I  T  F  P  K  L  K  L  L  K  L  V  N  L  P  I  S  R  W  D  A  S  E  E  S  F  P  Q  L  E  T  L  V  I  K  R  C  N  H  L  K  E  I  P  L  S  F  A  D  I  P  T  L  K  Q  I  K  L  I  R  C  E  N  E  S  L  K  D  S  A  V  E  I  K  K  D  V  E  E  N  E  G  N  D  R  I  D  L  I  I  K  :  G  W  *  G  I  *  F  E  M  K  H  :  Q  N  H  R  Q  S  G  R  G  I  T  R  Q  E  A  L  S  Q  V  H  K  F  S  Q  H  *  K  L  K  G  F  D  S  V  L  D  I  S  S  L  T  *  Y  F  C  C  A  L  K  I  L  K  F  V  I  V  E  L  L  *  F  V  A  P  I  E  K  F  *  S  Q  T  F  L  F  *  *  K  *   : L  T  K  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53821" stop="54558"/>
                    <exon start="54637" stop="54645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWEMEKLRHVKIWDAKFDLEEDNQGSSELENLRILQYVKFPIDGRDRVDMLSRRCPNLQKLHINLEYRGSNNSADLFCLTLENLTQLQNLRLTVERSNIVSGLQLPSNLNKLVLSGAHIENLSSFIAGLPSLEYLQFCDPYESVQIRDWCLGGITFPKLKLLKLVNLPISRWDASEESFPQLETLVIKRCNHLKEIPLSFADIPTLKQIKLIRCENESLKDSAVEIKKDVEENEGNDRIDLIIKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53819" e_stop="54558"/>
            <exon e_start="54637" e_stop="55032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.998"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53819" e_stop="54558" e_length="740"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54559" i_stop="54636" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="54637" e_stop="55032" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53819" stop="54379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53989" stop="54501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54241" stop="54558"/>
              <exon start="54637" stop="55032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54675" stop="55032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCGTCTTTTTGGGAGATGGAAAAATTAAGGCATGTTAAGATTTGGGATGCTAAATTTGATTTGGAAGAGGATAATCAGGGATCCTCCGAATTGGAAAATTTGAGGATATTACAGTATGTAAAATTTCCAATTGATGGAAGGGATAGGGTGGATATGTTATCAAGGAGGTGTCCAAATCTTCAAAAACTGCACATCAACTTGGAATATCGGGGCAGTAATAATTCGGCAGATTTATTTTGTCTCACATTAGAGAATCTTACTCAGCTTCAAAATCTTCGCCTAACTGTTGAGAGGTCCAACATTGTATCTGGGTTACAATTGCCTTCAAATTTAAACAAGTTGGTACTAAGTGGGGCTCATATCGAAAACCTGAGTTCCTTCATTGCAGGACTACCAAGCCTGGAGTATCTCCAATTTTGTGACCCCTATGAATCTGTTCAAATCAGAGATTGGTGCCTTGGAGGTATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGCCTCAGAGGAATCGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGCTGATATTCCAACACTGAAGCAGATTAAGTTGATTAGGTGCGAGAACGAATCTCTCAAGGATTCAGCTGTGGAGATTAAGAAAGACGTTGAAGAGAATGAAGGAAACGACCGTATTGACCTCATTATCAAA : GGATGGTAGGGAATATAATTCGAGATGAAACATGTACGTGCCTGTAATCACAACAATGCTATATATTCCTTCTTCTAATTTGACGCTTGCTTTTGCTTAATTGCTCCATGTTGATTTCAAAATTGCAGCAAAATCACAGACAGAGTGGCCGGGGAATAACAAGGCAAGAAGCTCTCTCTCAAGTTCACAAATTTTCGCAGCATTAAAAACTCAAAGGTTTTGATAGTGTCTTAGATATAAGCTCATTGACATGATACTTTTGCTGTGCACTCAAAATTTTGAAGTTTGTTATTGTTGAATTATTGTAATTTGTGGCACCTATTGAAAAATTTTAATCACAAACATTTCTTTTTTAATAAAAGTAACATGAATGATGGTTTGCTCATTCATCAAAGT</gDNA_template>
            <first_frame> Q  R  L  F  G  R  W  K  N  *  G  M  L  R  F  G  M  L  N  L  I  W  K  R  I  I  R  D  P  P  N  W  K  I  *  G  Y  Y  S  M  *  N  F  Q  L  M  E  G  I  G  W  I  C  Y  Q  G  G  V  Q  I  F  K  N  C  T  S  T  W  N  I  G  A  V  I  I  R  Q  I  Y  F  V  S  H  *  R  I  L  L  S  F  K  I  F  A  *  L  L  R  G  P  T  L  Y  L  G  Y  N  C  L  Q  I  *  T  S  W  Y  *  V  G  L  I  S  K  T  *  V  P  S  L  Q  D  Y  Q  A  W  S  I  S  N  F  V  T  P  M  N  L  F  K  S  E  I  G  A  L  E  V  S  R  S  L  N  L  S  C  *  N  W  *  T  Y  R  S  Q  G  G  M  P  Q  R  N  R  F  P  S  S  K  H  L  L  *  K  G  V  T  T  S  R  R  S  P  L  A  L  L  I  F  Q  H  *  S  R  L  S  *  L  G  A  R  T  N  L  S  R  I  Q  L  W  R  L  R  K  T  L  K  R  M  K  E  T  T  V  L  T  S  L  S  K :   D  G  R  E  Y  N  S  R  *  N  M  Y  V  P  V  I  T  T  M  L  Y  I  P  S  S  N  L  T  L  A  F  A  *  L  L  H  V  D  F  K  I  A  A  K  S  Q  T  E  W  P  G  N  N  K  A  R  S  S  L  S  S  S  Q  I  F  A  A  L  K  T  Q  R  F  *  *  C  L  R  Y  K  L  I  D  M  I  L  L  L  C  T  Q  N  F  E  V  C  Y  C  *  I  I  V  I  C  G  T  Y  *  K  I  L  I  T  N  I  S  F  L  I  K  V  T  *  M  M  V  C  S  F  I  K   </first_frame>
            <second_frame>  S  V  F  L  G  D  G  K  I  K  A  C  *  D  L  G  C  *  I  *  F  G  R  G  *  S  G  I  L  R  I  G  K  F  E  D  I  T  V  C  K  I  S  N  *  W  K  G  *  G  G  Y  V  I  K  E  V  S  K  S  S  K  T  A  H  Q  L  G  I  S  G  Q  *  *  F  G  R  F  I  L  S  H  I  R  E  S  Y  S  A  S  K  S  S  P  N  C  *  E  V  Q  H  C  I  W  V  T  I  A  F  K  F  K  Q  V  G  T  K  W  G  S  Y  R  K  P  E  F  L  H  C  R  T  T  K  P  G  V  S  P  I  L  *  P  L  *  I  C  S  N  Q  R  L  V  P  W  R  Y  H  V  P  *  T  *  V  V  E  T  G  E  L  T  D  L  K  V  G  C  L  R  G  I  V  S  P  A  R  N  T  C  Y  K  K  V  *  P  P  Q  G  D  P  P  *  L  C  *  Y  S  N  T  E  A  D  *  V  D  *  V  R  E  R  I  S  Q  G  F  S  C  G  D  *  E  R  R  *  R  E  *  R  K  R  P  Y  *  P  H  Y  Q   : R  M  V  G  N  I  I  R  D  E  T  C  T  C  L  *  S  Q  Q  C  Y  I  F  L  L  L  I  *  R  L  L  L  L  N  C  S  M  L  I  S  K  L  Q  Q  N  H  R  Q  S  G  R  G  I  T  R  Q  E  A  L  S  Q  V  H  K  F  S  Q  H  *  K  L  K  G  F  D  S  V  L  D  I  S  S  L  T  *  Y  F  C  C  A  L  K  I  L  K  F  V  I  V  E  L  L  *  F  V  A  P  I  E  K  F  *  S  Q  T  F  L  F  *  *  K  *  H  E  *  W  F  A  H  S  S  K  </second_frame>
            <third_frame>   A  S  F  W  E  M  E  K  L  R  H  V  K  I  W  D  A  K  F  D  L  E  E  D  N  Q  G  S  S  E  L  E  N  L  R  I  L  Q  Y  V  K  F  P  I  D  G  R  D  R  V  D  M  L  S  R  R  C  P  N  L  Q  K  L  H  I  N  L  E  Y  R  G  S  N  N  S  A  D  L  F  C  L  T  L  E  N  L  T  Q  L  Q  N  L  R  L  T  V  E  R  S  N  I  V  S  G  L  Q  L  P  S  N  L  N  K  L  V  L  S  G  A  H  I  E  N  L  S  S  F  I  A  G  L  P  S  L  E  Y  L  Q  F  C  D  P  Y  E  S  V  Q  I  R  D  W  C  L  G  G  I  T  F  P  K  L  K  L  L  K  L  V  N  L  P  I  S  R  W  D  A  S  E  E  S  F  P  Q  L  E  T  L  V  I  K  R  C  N  H  L  K  E  I  P  L  S  F  A  D  I  P  T  L  K  Q  I  K  L  I  R  C  E  N  E  S  L  K  D  S  A  V  E  I  K  K  D  V  E  E  N  E  G  N  D  R  I  D  L  I  I  K  :  G  W  *  G  I  *  F  E  M  K  H  V  R  A  C  N  H  N  N  A  I  Y  S  F  F  *  F  D  A  C  F  C  L  I  A  P  C  *  F  Q  N  C  S  K  I  T  D  R  V  A  G  E  *  Q  G  K  K  L  S  L  K  F  T  N  F  R  S  I  K  N  S  K  V  L  I  V  S  *  I  *  A  H  *  H  D  T  F  A  V  H  S  K  F  *  S  L  L  L  L  N  Y  C  N  L  W  H  L  L  K  N  F  N  H  K  H  F  F  F  N  K  S  N  M  N  D  G  L  L  I  H  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53821" stop="54558"/>
                    <exon start="54637" stop="54645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWEMEKLRHVKIWDAKFDLEEDNQGSSELENLRILQYVKFPIDGRDRVDMLSRRCPNLQKLHINLEYRGSNNSADLFCLTLENLTQLQNLRLTVERSNIVSGLQLPSNLNKLVLSGAHIENLSSFIAGLPSLEYLQFCDPYESVQIRDWCLGGITFPKLKLLKLVNLPISRWDASEESFPQLETLVIKRCNHLKEIPLSFADIPTLKQIKLIRCENESLKDSAVEIKKDVEENEGNDRIDLIIKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="58805" PGL_stop="58961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58805" e_stop="58961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="58805" e_stop="58961" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58805" stop="58961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGTGGCAACCATAGCGGGTGATGTTCTATACGTAATTCAAAAGCTTCTTCCTAGATCAATAAGCAAAGACGATGACACTAGCAAGATAAACATTTACTCGATGCAGGTATTGGAGAAAACTAAAGATCTGAAGGCACAAGTAGAGACGTACTAC</gDNA_template>
            <first_frame> K  R  G  N  H  S  G  *  C  S  I  R  N  S  K  A  S  S  *  I  N  K  Q  R  R  *  H  *  Q  D  K  H  L  L  D  A  G  I  G  E  N  *  R  S  E  G  T  S  R  D  V  L  </first_frame>
            <second_frame>  N  V  A  T  I  A  G  D  V  L  Y  V  I  Q  K  L  L  P  R  S  I  S  K  D  D  D  T  S  K  I  N  I  Y  S  M  Q  V  L  E  K  T  K  D  L  K  A  Q  V  E  T  Y  Y </second_frame>
            <third_frame>   T  W  Q  P  *  R  V  M  F  Y  T  *  F  K  S  F  F  L  D  Q  *  A  K  T  M  T  L  A  R  *  T  F  T  R  C  R  Y  W  R  K  L  K  I  *  R  H  K  *  R  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0109D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="60240" PGL_stop="61437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60240" e_stop="61437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60240" e_stop="61437" e_length="1198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60240" stop="60763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60643" stop="61199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61061" stop="61437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAACGTGTCTGCATTGTTAAGTTTATGGTTAGCGGAAGACTTCGTTCAGAACATTAAATCTGCTGAAGATTACTTGATGAATCTCATTAGCAGTAACGTGGTAATGGTTTCAAAGAAAGAATATAATGGCAAGATCAAATACTGTGAGGTTCATGATGTAGTGCTTCACTTTTGCTTGGAGAAGAGTAGAGAAGAAAATTTTATGTTGGTTGCGAAGGGAAATCATAGTCAATTTCAATCTTTTGTTTGGAAGCAAAGTCGAGTGAGCTTCAATTTGATTGAAGAGAATTCCAAGTTTGCATCCAAAACAAGGAAGTGTTCCCATCAACCGTTGAGGTCACTGATAACGAACGGAGCATCTTTTTATATAATGTCCTTAAGTTCTTGGATTCATAATTTGCGACTTCTTAAGGTCTTGGTTTTGAGTTCCTATGAAGTTGACTATGTGAATTCAGCTACACTGAAACCACTTAATTACCTGAAGTACCTCGGAGTAAGGGCAACTACGTTCTATTTTGATCGAGAATCACATCTGCCCCATCTTGAAACTTTAATTGTGAAGAATGATAGATCAGTTATGTTACGAGGGTGTTTTTGGGAAATGGAACAATTAAGGCATGTTGAGATCAATGATGCTGAATTTGATAAGCAGGGGCTCTTTGAAGGATCCTCTAAATTGGAAAATTTGAGGATATTAAAGAACATTGTTGGATTTCCAATTGATAGGGCGGATGTGTTATCAAGGAGGTGTCCTAATCTTCAACAACTTCAAATCGAATTTGGATCTTTTGCAGAACCTCTTTGGCTCACATTGGAGAATCTTACCCAGCTTCAAATACTTGACCTTTCCTTTAGGTTGTTCCACATGCTATCTGGGTTACAATTGCCTTCAAATTTAAAGATGTTGGTACTAAGAGACGCTGATCTAGAAAACCTAACTTCCTTCTTTGCTGGACTACCAAGCCTGGAGTATCTTCAATTAACAAATATGTATTTTCCTCAATCAGAATGGTGCCTTGGAGATATCACGTTTCATAAACTCAAGTTGTTGAAACTGGTGCAGTTAGATATCTCAAGGTGGGATGTCTCGGAGGAATCCTTTCCCCTGCTTGAAACAATCGTTATAAGATGGTGCCATAACCTCGAGGAAATCCCCATTAGCTTTGCAGATGTTCCAACACTGAAACAGATTAAGT</gDNA_template>
            <first_frame> I  N  V  S  A  L  L  S  L  W  L  A  E  D  F  V  Q  N  I  K  S  A  E  D  Y  L  M  N  L  I  S  S  N  V  V  M  V  S  K  K  E  Y  N  G  K  I  K  Y  C  E  V  H  D  V  V  L  H  F  C  L  E  K  S  R  E  E  N  F  M  L  V  A  K  G  N  H  S  Q  F  Q  S  F  V  W  K  Q  S  R  V  S  F  N  L  I  E  E  N  S  K  F  A  S  K  T  R  K  C  S  H  Q  P  L  R  S  L  I  T  N  G  A  S  F  Y  I  M  S  L  S  S  W  I  H  N  L  R  L  L  K  V  L  V  L  S  S  Y  E  V  D  Y  V  N  S  A  T  L  K  P  L  N  Y  L  K  Y  L  G  V  R  A  T  T  F  Y  F  D  R  E  S  H  L  P  H  L  E  T  L  I  V  K  N  D  R  S  V  M  L  R  G  C  F  W  E  M  E  Q  L  R  H  V  E  I  N  D  A  E  F  D  K  Q  G  L  F  E  G  S  S  K  L  E  N  L  R  I  L  K  N  I  V  G  F  P  I  D  R  A  D  V  L  S  R  R  C  P  N  L  Q  Q  L  Q  I  E  F  G  S  F  A  E  P  L  W  L  T  L  E  N  L  T  Q  L  Q  I  L  D  L  S  F  R  L  F  H  M  L  S  G  L  Q  L  P  S  N  L  K  M  L  V  L  R  D  A  D  L  E  N  L  T  S  F  F  A  G  L  P  S  L  E  Y  L  Q  L  T  N  M  Y  F  P  Q  S  E  W  C  L  G  D  I  T  F  H  K  L  K  L  L  K  L  V  Q  L  D  I  S  R  W  D  V  S  E  E  S  F  P  L  L  E  T  I  V  I  R  W  C  H  N  L  E  E  I  P  I  S  F  A  D  V  P  T  L  K  Q  I  K  </first_frame>
            <second_frame>  L  T  C  L  H  C  *  V  Y  G  *  R  K  T  S  F  R  T  L  N  L  L  K  I  T  *  *  I  S  L  A  V  T  W  *  W  F  Q  R  K  N  I  M  A  R  S  N  T  V  R  F  M  M  *  C  F  T  F  A  W  R  R  V  E  K  K  I  L  C  W  L  R  R  E  I  I  V  N  F  N  L  L  F  G  S  K  V  E  *  A  S  I  *  L  K  R  I  P  S  L  H  P  K  Q  G  S  V  P  I  N  R  *  G  H  *  *  R  T  E  H  L  F  I  *  C  P  *  V  L  G  F  I  I  C  D  F  L  R  S  W  F  *  V  P  M  K  L  T  M  *  I  Q  L  H  *  N  H  L  I  T  *  S  T  S  E  *  G  Q  L  R  S  I  L  I  E  N  H  I  C  P  I  L  K  L  *  L  *  R  M  I  D  Q  L  C  Y  E  G  V  F  G  K  W  N  N  *  G  M  L  R  S  M  M  L  N  L  I  S  R  G  S  L  K  D  P  L  N  W  K  I  *  G  Y  *  R  T  L  L  D  F  Q  L  I  G  R  M  C  Y  Q  G  G  V  L  I  F  N  N  F  K  S  N  L  D  L  L  Q  N  L  F  G  S  H  W  R  I  L  P  S  F  K  Y  L  T  F  P  L  G  C  S  T  C  Y  L  G  Y  N  C  L  Q  I  *  R  C  W  Y  *  E  T  L  I  *  K  T  *  L  P  S  L  L  D  Y  Q  A  W  S  I  F  N  *  Q  I  C  I  F  L  N  Q  N  G  A  L  E  I  S  R  F  I  N  S  S  C  *  N  W  C  S  *  I  S  Q  G  G  M  S  R  R  N  P  F  P  C  L  K  Q  S  L  *  D  G  A  I  T  S  R  K  S  P  L  A  L  Q  M  F  Q  H  *  N  R  L  S </second_frame>
            <third_frame>   *  R  V  C  I  V  K  F  M  V  S  G  R  L  R  S  E  H  *  I  C  *  R  L  L  D  E  S  H  *  Q  *  R  G  N  G  F  K  E  R  I  *  W  Q  D  Q  I  L  *  G  S  *  C  S  A  S  L  L  L  G  E  E  *  R  R  K  F  Y  V  G  C  E  G  K  S  *  S  I  S  I  F  C  L  E  A  K  S  S  E  L  Q  F  D  *  R  E  F  Q  V  C  I  Q  N  K  E  V  F  P  S  T  V  E  V  T  D  N  E  R  S  I  F  L  Y  N  V  L  K  F  L  D  S  *  F  A  T  S  *  G  L  G  F  E  F  L  *  S  *  L  C  E  F  S  Y  T  E  T  T  *  L  P  E  V  P  R  S  K  G  N  Y  V  L  F  *  S  R  I  T  S  A  P  S  *  N  F  N  C  E  E  *  *  I  S  Y  V  T  R  V  F  L  G  N  G  T  I  K  A  C  *  D  Q  *  C  *  I  *  *  A  G  A  L  *  R  I  L  *  I  G  K  F  E  D  I  K  E  H  C  W  I  S  N  *  *  G  G  C  V  I  K  E  V  S  *  S  S  T  T  S  N  R  I  W  I  F  C  R  T  S  L  A  H  I  G  E  S  Y  P  A  S  N  T  *  P  F  L  *  V  V  P  H  A  I  W  V  T  I  A  F  K  F  K  D  V  G  T  K  R  R  *  S  R  K  P  N  F  L  L  C  W  T  T  K  P  G  V  S  S  I  N  K  Y  V  F  S  S  I  R  M  V  P  W  R  Y  H  V  S  *  T  Q  V  V  E  T  G  A  V  R  Y  L  K  V  G  C  L  G  G  I  L  S  P  A  *  N  N  R  Y  K  M  V  P  *  P  R  G  N  P  H  *  L  C  R  C  S  N  T  E  T  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60240" stop="61436"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INVSALLSLWLAEDFVQNIKSAEDYLMNLISSNVVMVSKKEYNGKIKYCEVHDVVLHFCLEKSREENFMLVAKGNHSQFQSFVWKQSRVSFNLIEENSKFASKTRKCSHQPLRSLITNGASFYIMSLSSWIHNLRLLKVLVLSSYEVDYVNSATLKPLNYLKYLGVRATTFYFDRESHLPHLETLIVKNDRSVMLRGCFWEMEQLRHVEINDAEFDKQGLFEGSSKLENLRILKNIVGFPIDRADVLSRRCPNLQQLQIEFGSFAEPLWLTLENLTQLQILDLSFRLFHMLSGLQLPSNLKMLVLRDADLENLTSFFAGLPSLEYLQLTNMYFPQSEWCLGDITFHKLKLLKLVQLDISRWDVSEESFPLLETIVIRWCHNLEEIPISFADVPTLKQIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="68617" PGL_stop="66371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68617" e_stop="68450"/>
            <exon e_start="67048" e_stop="66371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68617" e_stop="68450" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="68449" i_stop="67049" i_length="1401"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="67048" e_stop="66371" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="68450"/>
              <exon start="67048" stop="66486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68464" stop="68450"/>
              <exon start="67048" stop="66371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTGGTCATTTTATAAATAATTCATTGGAGATTGAAAGTACTATTAAGTGGTTAGATGATCAACAGGATTCCTCTGTAGTGTTTTTGTGTTTTGGTAGTATGGGAAGTTTTGAAGCAGAACAGGTCAAAGAAATAGCAACTGCACTGGAGCATTCCGGTCACAG : GTTCTTGTGGTCTTTAAGAAAATCTCCACCAAAGGGAAAAGTAGATATACCAACAAGTTACAGCGACTATGAAGAAGTTTTGCCAAAAGGATTCTTGGAGAGAACAAAAGAAAGAGGAAAAATAATAGGATGGGCACCACAAGTAACAATTTTATCTCATCCATCAATAGGAGGATTTGTGTCCCATTGTGGATGGAATTCAATACTAGAAAGTGTACATTTTGGTGTACCAATTGCAACTTGGCCACTCTATGCTGAACAACAAATGAATGCATTTTTATTAGTGAAAGAATTAGGACTTGGTGAAGAGATAAGATTGGACTATGCTGTTGATTTTGAAGGGAAAAATAATCAAGTTGATACAGTAAGTGCTCAAGAAATTGAAAGTGGTTTATTAAAGTTGATGGTAAAAAGTGAAGAAAATGAAGTGAGGAAAAAAATGAAGGAGAAGAGTAGAGTAGCTATGGAGGAAGGTGGATCATCTTATAACTCACTTGGACTTCTAATTAAGGATGTAATCACAAATATTTAATTTTCTTATAGTATATGAAGAAGCAAAACAAGAGAAGATATATGGTATTTGAGGAGATATGTAGTATTATGATTTATGGTCATTTTTAATATTTGTACACTTTCAATATTTATTCAATGCGTTCACTTCAAAAATAATTTTCATAC</gDNA_template>
            <first_frame> K  K  W  S  F  Y  K  *  F  I  G  D  *  K  Y  Y  *  V  V  R  *  S  T  G  F  L  C  S  V  F  V  F  W  *  Y  G  K  F  *  S  R  T  G  Q  R  N  S  N  C  T  G  A  F  R  S  Q  :  V  L  V  V  F  K  K  I  S  T  K  G  K  S  R  Y  T  N  K  L  Q  R  L  *  R  S  F  A  K  R  I  L  G  E  N  K  R  K  R  K  N  N  R  M  G  T  T  S  N  N  F  I  S  S  I  N  R  R  I  C  V  P  L  W  M  E  F  N  T  R  K  C  T  F  W  C  T  N  C  N  L  A  T  L  C  *  T  T  N  E  C  I  F  I  S  E  R  I  R  T  W  *  R  D  K  I  G  L  C  C  *  F  *  R  E  K  *  S  S  *  Y  S  K  C  S  R  N  *  K  W  F  I  K  V  D  G  K  K  *  R  K  *  S  E  E  K  N  E  G  E  E  *  S  S  Y  G  G  R  W  I  I  L  *  L  T  W  T  S  N  *  G  C  N  H  K  Y  L  I  F  L  *  Y  M  K  K  Q  N  K  R  R  Y  M  V  F  E  E  I  C  S  I  M  I  Y  G  H  F  *  Y  L  Y  T  F  N  I  Y  S  M  R  S  L  Q  K  *  F  S  Y </first_frame>
            <second_frame>  K  S  G  H  F  I  N  N  S  L  E  I  E  S  T  I  K  W  L  D  D  Q  Q  D  S  S  V  V  F  L  C  F  G  S  M  G  S  F  E  A  E  Q  V  K  E  I  A  T  A  L  E  H  S  G  H  R :   F  L  W  S  L  R  K  S  P  P  K  G  K  V  D  I  P  T  S  Y  S  D  Y  E  E  V  L  P  K  G  F  L  E  R  T  K  E  R  G  K  I  I  G  W  A  P  Q  V  T  I  L  S  H  P  S  I  G  G  F  V  S  H  C  G  W  N  S  I  L  E  S  V  H  F  G  V  P  I  A  T  W  P  L  Y  A  E  Q  Q  M  N  A  F  L  L  V  K  E  L  G  L  G  E  E  I  R  L  D  Y  A  V  D  F  E  G  K  N  N  Q  V  D  T  V  S  A  Q  E  I  E  S  G  L  L  K  L  M  V  K  S  E  E  N  E  V  R  K  K  M  K  E  K  S  R  V  A  M  E  E  G  G  S  S  Y  N  S  L  G  L  L  I  K  D  V  I  T  N  I  *  F  S  Y  S  I  *  R  S  K  T  R  E  D  I  W  Y  L  R  R  Y  V  V  L  *  F  M  V  I  F  N  I  C  T  L  S  I  F  I  Q  C  V  H  F  K  N  N  F  H   </second_frame>
            <third_frame>   K  V  V  I  L  *  I  I  H  W  R  L  K  V  L  L  S  G  *  M  I  N  R  I  P  L  *  C  F  C  V  L  V  V  W  E  V  L  K  Q  N  R  S  K  K  *  Q  L  H  W  S  I  P  V  T   : G  S  C  G  L  *  E  N  L  H  Q  R  E  K  *  I  Y  Q  Q  V  T  A  T  M  K  K  F  C  Q  K  D  S  W  R  E  Q  K  K  E  E  K  *  *  D  G  H  H  K  *  Q  F  Y  L  I  H  Q  *  E  D  L  C  P  I  V  D  G  I  Q  Y  *  K  V  Y  I  L  V  Y  Q  L  Q  L  G  H  S  M  L  N  N  K  *  M  H  F  Y  *  *  K  N  *  D  L  V  K  R  *  D  W  T  M  L  L  I  L  K  G  K  I  I  K  L  I  Q  *  V  L  K  K  L  K  V  V  Y  *  S  *  W  *  K  V  K  K  M  K  *  G  K  K  *  R  R  R  V  E  *  L  W  R  K  V  D  H  L  I  T  H  L  D  F  *  L  R  M  *  S  Q  I  F  N  F  L  I  V  Y  E  E  A  K  Q  E  K  I  Y  G  I  *  G  D  M  *  Y  Y  D  L  W  S  F  L  I  F  V  H  F  Q  Y  L  F  N  A  F  T  S  K  I  I  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68616" stop="68450"/>
                    <exon start="67048" stop="66517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSGHFINNSLEIESTIKWLDDQQDSSVVFLCFGSMGSFEAEQVKEIATALEHSGHRFLWSLRKSPPKGKVDIPTSYSDYEEVLPKGFLERTKERGKIIGWAPQVTILSHPSIGGFVSHCGWNSILESVHFGVPIATWPLYAEQQMNAFLLVKELGLGEEIRLDYAVDFEGKNNQVDTVSAQEIESGLLKLMVKSEENEVRKKMKEKSRVAMEEGGSSYNSLGLLIKDVITNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="69355" PGL_stop="68672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69355" e_stop="68672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="68672" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="68672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="68826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCAACATGAAAGAATTAATTTTCATTCCTTTAGCAGGATTAGGGCACATTGTATCAGCTATTGAATTTGCAAAACAAATTCTAAATAAAGATGAAAATTTTTCCATCTCTTTTCTCATCATGGAACTTCCTTTAGACTATGGTGTGAAAAATTTCATTCAATCACTCACTTCTCAACCTCGTTTAAAATTCATCGATATCACCCTAGACGAAAAAACATCATCTCAATTCCTCAATAACCATGAAACATTCCTCTATGATTTCATCGATGGTCACAAACCACGCGTACGTGAATATGTTCACAACATTTGTAAAACAAGTCCATGTTATGGTTTTGTTCTTGACATGTTTTGTACATCGATGATTGATATAGCTAACGAATTCAATGTCCCTAGTTACATTTACTTCGCGTCAAACGCTTCTTTTCTTGGCTTATGTCTTCATTTTGAGACTTTAAGAAATGAACAACATTCAGATACGTCCAGATACATGAACTCTAACGAGGCATTATCAATCCCATGTTTTAAAAATCTTTGTCCTACTAAAGTTTTGCCTAAGCATTTGTTAGATTCAAGACTTGCTTCAACATTGTTTTTTGATGGAATTCGTCGATTTAAAGAGACTAAGGGGATTATTGTTAATACTTTTTTCGAGCTTGAATCGTTTTCTCTTCAGGCTCTTTT</gDNA_template>
            <first_frame> C  Q  H  E  R  I  N  F  H  S  F  S  R  I  R  A  H  C  I  S  Y  *  I  C  K  T  N  S  K  *  R  *  K  F  F  H  L  F  S  H  H  G  T  S  F  R  L  W  C  E  K  F  H  S  I  T  H  F  S  T  S  F  K  I  H  R  Y  H  P  R  R  K  N  I  I  S  I  P  Q  *  P  *  N  I  P  L  *  F  H  R  W  S  Q  T  T  R  T  *  I  C  S  Q  H  L  *  N  K  S  M  L  W  F  C  S  *  H  V  L  Y  I  D  D  *  Y  S  *  R  I  Q  C  P  *  L  H  L  L  R  V  K  R  F  F  S  W  L  M  S  S  F  *  D  F  K  K  *  T  T  F  R  Y  V  Q  I  H  E  L  *  R  G  I  I  N  P  M  F  *  K  S  L  S  Y  *  S  F  A  *  A  F  V  R  F  K  T  C  F  N  I  V  F  *  W  N  S  S  I  *  R  D  *  G  D  Y  C  *  Y  F  F  R  A  *  I  V  F  S  S  G  S  F </first_frame>
            <second_frame>  V  N  M  K  E  L  I  F  I  P  L  A  G  L  G  H  I  V  S  A  I  E  F  A  K  Q  I  L  N  K  D  E  N  F  S  I  S  F  L  I  M  E  L  P  L  D  Y  G  V  K  N  F  I  Q  S  L  T  S  Q  P  R  L  K  F  I  D  I  T  L  D  E  K  T  S  S  Q  F  L  N  N  H  E  T  F  L  Y  D  F  I  D  G  H  K  P  R  V  R  E  Y  V  H  N  I  C  K  T  S  P  C  Y  G  F  V  L  D  M  F  C  T  S  M  I  D  I  A  N  E  F  N  V  P  S  Y  I  Y  F  A  S  N  A  S  F  L  G  L  C  L  H  F  E  T  L  R  N  E  Q  H  S  D  T  S  R  Y  M  N  S  N  E  A  L  S  I  P  C  F  K  N  L  C  P  T  K  V  L  P  K  H  L  L  D  S  R  L  A  S  T  L  F  F  D  G  I  R  R  F  K  E  T  K  G  I  I  V  N  T  F  F  E  L  E  S  F  S  L  Q  A  L   </second_frame>
            <third_frame>   S  T  *  K  N  *  F  S  F  L  *  Q  D  *  G  T  L  Y  Q  L  L  N  L  Q  N  K  F  *  I  K  M  K  I  F  P  S  L  F  S  S  W  N  F  L  *  T  M  V  *  K  I  S  F  N  H  S  L  L  N  L  V  *  N  S  S  I  S  P  *  T  K  K  H  H  L  N  S  S  I  T  M  K  H  S  S  M  I  S  S  M  V  T  N  H  A  Y  V  N  M  F  T  T  F  V  K  Q  V  H  V  M  V  L  F  L  T  C  F  V  H  R  *  L  I  *  L  T  N  S  M  S  L  V  T  F  T  S  R  Q  T  L  L  F  L  A  Y  V  F  I  L  R  L  *  E  M  N  N  I  Q  I  R  P  D  T  *  T  L  T  R  H  Y  Q  S  H  V  L  K  I  F  V  L  L  K  F  C  L  S  I  C  *  I  Q  D  L  L  Q  H  C  F  L  M  E  F  V  D  L  K  R  L  R  G  L  L  L  I  L  F  S  S  L  N  R  F  L  F  R  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69354" stop="68674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNMKELIFIPLAGLGHIVSAIEFAKQILNKDENFSISFLIMELPLDYGVKNFIQSLTSQPRLKFIDITLDEKTSSQFLNNHETFLYDFIDGHKPRVREYVHNICKTSPCYGFVLDMFCTSMIDIANEFNVPSYIYFASNASFLGLCLHFETLRNEQHSDTSRYMNSNEALSIPCFKNLCPTKVLPKHLLDSRLASTLFFDGIRRFKETKGIIVNTFFELESFSLQAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="73866" PGL_stop="78796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73866" e_stop="74118"/>
            <exon e_start="74266" e_stop="74573"/>
            <exon e_start="75374" e_stop="75612"/>
            <exon e_start="76169" e_stop="76367"/>
            <exon e_start="76563" e_stop="76640"/>
            <exon e_start="76723" e_stop="76906"/>
            <exon e_start="77756" e_stop="77922"/>
            <exon e_start="78098" e_stop="78796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.240" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="0.997"/>
          <exon-intron don_prob="0.987" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.081" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73866" e_stop="74118" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.240" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74119" i_stop="74265" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="74266" e_stop="74573" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="74574" i_stop="75373" i_length="800"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75374" e_stop="75612" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.876">
            <gDNA_intron_boundary i_start="75613" i_stop="76168" i_length="556"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76169" e_stop="76367" e_length="199"/>
          </exon>
          <intron i_serial="4" don_prob="0.848" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76368" i_stop="76562" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76563" e_stop="76640" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.081">
            <gDNA_intron_boundary i_start="76641" i_stop="76722" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76723" e_stop="76906" e_length="184"/>
          </exon>
          <intron i_serial="6" don_prob="0.958" acc_prob="0.690">
            <gDNA_intron_boundary i_start="76907" i_stop="77755" i_length="849"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77756" e_stop="77922" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="78098" e_stop="78796" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73866" stop="74118"/>
              <exon start="74266" stop="74388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73867" stop="74118"/>
              <exon start="74266" stop="74556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73867" stop="74118"/>
              <exon start="74266" stop="74463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74466" stop="74573"/>
              <exon start="75374" stop="75577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75469" stop="75612"/>
              <exon start="76169" stop="76367"/>
              <exon start="76563" stop="76640"/>
              <exon start="76723" stop="76906"/>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76877" stop="76906"/>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77829" stop="77922"/>
              <exon start="78098" stop="78796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACATGTATTTTACATTAACTAACTAGATTTAAAACAAATATCGGACACATATTAAAAAATTAATTTGAAAAAATGATTTTTCAATTTCAGTTTTCATTTTAAAAGTGAAATTCCATTTTTACCCTTTTTCACCTACTATTTAATTTTCATTTTCTTTTAGAATTTTCTAGTTATGGTGTTTTCCTTCTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTG : CTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAG : ATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAG : ATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTGAGCTAAAAGCACACTTGGATGACCTCGGAGATTGTCTCTTTTCTGATGAAGCAAGCCCTCTGCCTGAGTGGAAGGCAAAAGAGGGTAAAAAGAAG : GTCCCCGAGGTATTCAATCGCATGTTGCAGTCGCATACCATGCAATTTACTAGCATAACAGAGACATCAAGCAAGGAT : GGTCTCACTATAATTTGGTCAAAAAGAGGTGGTGATGTGTTTGCACAAAGCCACTCGAAGTGGCTTCAGACTGTGGCTGCTTACCCTGATGGCATACTCTTCAAACTTGTACCGATTACTTCGCTCTTAACAGGAATACCAGGAAGCGGTTATCTCAGCCATGCAATAAATTTATATCTACGCT : ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG : GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGCTACACCAGAGGGTACTCATAGGTCAAGTTTCTTAACAAATCTCAGCACAACTTTTACTTTCACTCAGCGGACAAAGACAGATGCTGCACCAAAGCAGCTTCCTGCTGCTCTTAACTCGGGCGTATATCCAGACGGACCTCCAGTACCAGTTCGATCAACAAAGCTGCTCAAGTATGTAGATACGGCTGAGATTGCACGAGGGCCATACGACACTCCTGGACATTGGTTGGTAACTGCTGCTAAGCTTGTTACAGAAGGTGGGAAGATAGGTTTGCATGTGAAGTTTGCTCTA</gDNA_template>
            <first_frame> P  T  C  I  L  H  *  L  T  R  F  K  T  N  I  G  H  I  L  K  N  *  F  E  K  M  I  F  Q  F  Q  F  S  F  *  K  *  N  S  I  F  T  L  F  H  L  L  F  N  F  H  F  L  L  E  F  S  S  Y  G  V  F  L  L  P  S  F  F  L  V  *  Q  D  *  W  S  Q  Q  F  T  D  E  T  S   : A  Q  K  T  N  Q  K  G  S  S  Y  D  V  F  E  L  M  D  E  E  F  E  R  K  R  I  E  V  K  A  M  E  A  L  G  C  G  F  D  F  A  S  D  F  R  L  K  F  V  K  R  C  P  N  G  G  R  L  V  I  L  D  E  S  N  R  R  N  V  V  I  P  G  G  V  T  I  P  D  V  S  E  N  I  R  C  D  K  G  D  H  I  R  F  K  S  D  V  L  E  F  N  Q  :  M  S  E  L  L  N  Q  K  S  S  I  H  G  K  V  P  S  G  Y  L  N  A  I  F  D  L  S  G  A  W  L  N  D  S  A  D  A  K  Y  L  A  F  D  G  Y  F  V  S  L  Y  Y  L  H  L  T  A  S  P  L  V  L  H  D  Q  V  K  K  A  V  P  P  H  W  D  P  A  S  L  S  R :   F  I  Q  A  Y  G  T  H  I  I  V  G  M  G  V  G  G  Q  D  L  L  C  V  K  Q  K  P  S  S  T  V  P  P  A  E  L  K  A  H  L  D  D  L  G  D  C  L  F  S  D  E  A  S  P  L  P  E  W  K  A  K  E  G  K  K  K  :  V  P  E  V  F  N  R  M  L  Q  S  H  T  M  Q  F  T  S  I  T  E  T  S  S  K  D  :  G  L  T  I  I  W  S  K  R  G  G  D  V  F  A  Q  S  H  S  K  W  L  Q  T  V  A  A  Y  P  D  G  I  L  F  K  L  V  P  I  T  S  L  L  T  G  I  P  G  S  G  Y  L  S  H  A  I  N  L  Y  L  R   : Y  K  P  A  L  E  D  L  Q  C  F  L  E  F  Q  V  P  S  Q  W  A  P  L  F  C  E  L  P  L  S  H  Q  R  K  V  A  S  C  P  A  L  Q  F  C  L  F  G  P  K  L  C  V  R  P  T  Q  :  V  T  S  G  Q  K  P  V  I  G  L  R  L  Y  L  E  G  K  K  C  N  H  L  A  I  H  V  Q  H  L  S  S  L  P  N  I  M  A  S  K  S  V  N  N  L  T  L  C  K  P  C  Q  W  R  G  S  D  D  Y  E  S  S  D  Q  F  L  D  P  V  R  W  P  R  Y  S  N  V  C  S  S  V  V  K  H  D  P  S  W  M  Q  G  E  T  S  G  V  F  V  V  T  G  A  H  L  V  S  K  G  K  W  P  K  T  V  L  H  L  R  L  L  F  T  Y  L  P  N  C  T  I  R  K  T  E  W  A  A  T  P  E  G  T  H  R  S  S  F  L  T  N  L  S  T  T  F  T  F  T  Q  R  T  K  T  D  A  A  P  K  Q  L  P  A  A  L  N  S  G  V  Y  P  D  G  P  P  V  P  V  R  S  T  K  L  L  K  Y  V  D  T  A  E  I  A  R  G  P  Y  D  T  P  G  H  W  L  V  T  A  A  K  L  V  T  E  G  G  K  I  G  L  H  V  K  F  A  L </first_frame>
            <second_frame>  Q  H  V  F  Y  I  N  *  L  D  L  K  Q  I  S  D  T  Y  *  K  I  N  L  K  K  *  F  F  N  F  S  F  H  F  K  S  E  I  P  F  L  P  F  F  T  Y  Y  L  I  F  I  F  F  *  N  F  L  V  M  V  F  S  F  F  L  P  S  F  *  Y  N  K  I  N  G  V  N  N  L  Q  T  K  H  L  :  L  K  K  P  T  R  K  A  Q  A  T  T  F  L  S  *  W  M  K  N  S  R  G  R  G  L  K  L  R  L  W  K  L  W  A  V  G  L  I  L  L  A  I  S  G  *  S  S  *  K  D  V  Q  T  G  V  D  W  *  F  W  M  R  V  I  D  G  T  S  S  S  P  A  A  L  Q  F  P  M  Y  L  K  I  S  D  V  I  K  G  T  T  F  V  S  S  L  M  F  S  N  L  I  R :   C  Q  N  C  *  I  K  N  H  Q  Y  M  E  R  F  H  Q  A  I  *  M  P  F  L  I  *  V  E  P  G  *  M  I  Q  Q  M  L  S  T  S  R  L  M  V  I  L  S  R  Y  T  I  C  T  *  Q  H  P  H  *  Y  S  M  T  K  *  R  K  L  F  H  R  I  G  I  Q  H  P  Y  P   : D  L  F  R  L  M  G  H  T  *  L  W  V  W  V  L  E  A  R  T  Y  F  V  L  S  R  N  H  L  Q  Q  F  L  L  L  S  *  K  H  T  W  M  T  S  E  I  V  S  F  L  M  K  Q  A  L  C  L  S  G  R  Q  K  R  V  K  R  R :   S  P  R  Y  S  I  A  C  C  S  R  I  P  C  N  L  L  A  *  Q  R  H  Q  A  R  M :   V  S  L  *  F  G  Q  K  E  V  V  M  C  L  H  K  A  T  R  S  G  F  R  L  W  L  L  T  L  M  A  Y  S  S  N  L  Y  R  L  L  R  S  *  Q  E  Y  Q  E  A  V  I  S  A  M  Q  *  I  Y  I  Y  A  :  I  S  L  L  *  R  I  Y  S  V  S  S  S  F  K  F  L  A  S  G  R  H  C  S  A  S  C  L  L  A  I  K  E  K  W  H  L  A  L  H  C  S  S  V  Y  S  A  Q  S  F  V  *  D  L  P  R :   L  Q  V  V  K  N  P  S  L  V  C  A  C  I  *  K  G  R  N  A  T  T  *  P  Y  M  Y  N  I  F  L  V  Y  Q  T  L  W  H  L  S  L  L  I  T  *  P  Y  A  S  H  V  N  G  E  A  P  M  I  M  N  L  A  T  N  S  *  I  L  S  D  G  R  D  I  P  T  C  A  H  L  *  L  S  M  I  Q  A  G  C  R  A  K  R  V  A  S  L  W  *  L  V  H  T  L  S  A  K  G  S  G  L  R  Q  C  F  T  C  V  Y  F  S  P  I  F  L  T  A  Q  Y  E  R  Q  S  G  Q  L  H  Q  R  V  L  I  G  Q  V  S  *  Q  I  S  A  Q  L  L  L  S  L  S  G  Q  R  Q  M  L  H  Q  S  S  F  L  L  L  L  T  R  A  Y  I  Q  T  D  L  Q  Y  Q  F  D  Q  Q  S  C  S  S  M  *  I  R  L  R  L  H  E  G  H  T  T  L  L  D  I  G  W  *  L  L  L  S  L  L  Q  K  V  G  R  *  V  C  M  *  S  L  L   </second_frame>
            <third_frame>   N  M  Y  F  T  L  T  N  *  I  *  N  K  Y  R  T  H  I  K  K  L  I  *  K  N  D  F  S  I  S  V  F  I  L  K  V  K  F  H  F  Y  P  F  S  P  T  I  *  F  S  F  S  F  R  I  F  *  L  W  C  F  P  S  S  F  L  L  F  S  I  T  R  L  M  E  S  T  I  Y  R  R  N  I  C :   S  K  N  Q  P  E  R  L  K  L  R  R  F  *  A  D  G  *  R  I  R  E  E  E  D  *  S  *  G  Y  G  S  F  G  L  W  V  *  F  C  *  R  F  Q  V  E  V  R  K  K  M  S  K  R  G  *  I  G  N  F  G  *  E  *  *  T  E  R  R  H  P  R  R  R  Y  N  S  R  C  I  *  K  Y  P  M  *  *  R  G  P  H  S  F  Q  V  *  C  S  R  I  *  S   : D  V  R  I  A  K  S  K  I  I  N  T  W  K  G  S  I  R  L  S  K  C  H  F  *  F  K  W  S  L  V  E  *  F  S  R  C  *  V  P  R  V  *  W  L  F  C  L  V  I  L  F  A  P  D  S  I  P  I  S  T  P  *  P  S  E  E  S  C  S  T  A  L  G  S  S  I  L  I  Q  :  I  Y  S  G  L  W  D  T  H  N  C  G  Y  G  C  W  R  P  G  P  T  L  C  *  A  E  T  I  F  N  S  S  S  C  *  A  K  S  T  L  G  *  P  R  R  L  S  L  F  *  *  S  K  P  S  A  *  V  E  G  K  R  G  *  K  E   : G  P  R  G  I  Q  S  H  V  A  V  A  Y  H  A  I  Y  *  H  N  R  D  I  K  Q  G   : W  S  H  Y  N  L  V  K  K  R  W  *  C  V  C  T  K  P  L  E  V  A  S  D  C  G  C  L  P  *  W  H  T  L  Q  T  C  T  D  Y  F  A  L  N  R  N  T  R  K  R  L  S  Q  P  C  N  K  F  I  S  T  L :   *  A  C  S  R  G  F  T  V  F  P  R  V  S  S  S  *  P  V  G  A  I  V  L  R  A  A  S  *  P  S  K  K  S  G  I  L  P  C  I  A  V  L  F  I  R  P  K  A  L  C  E  T  Y  P   : G  Y  K  W  S  K  T  R  H  W  F  A  L  V  F  R  R  E  E  M  Q  P  L  S  H  T  C  T  T  S  F  *  F  T  K  H  Y  G  I  *  V  C  *  *  P  N  L  M  Q  A  M  S  M  A  R  L  R  *  L  *  I  *  R  P  I  L  R  S  C  Q  M  A  E  I  F  Q  R  V  L  I  C  S  *  A  *  S  K  L  D  A  G  R  N  E  W  R  L  C  G  N  W  C  T  P  C  Q  Q  R  E  V  A  *  D  S  A  S  P  A  S  T  F  H  L  S  S  *  L  H  N  T  K  D  R  V  G  S  Y  T  R  G  Y  S  *  V  K  F  L  N  K  S  Q  H  N  F  Y  F  H  S  A  D  K  D  R  C  C  T  K  A  A  S  C  C  S  *  L  G  R  I  S  R  R  T  S  S  T  S  S  I  N  K  A  A  Q  V  C  R  Y  G  *  D  C  T  R  A  I  R  H  S  W  T  L  V  G  N  C  C  *  A  C  Y  R  R  W  E  D  R  F  A  C  E  V  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74088" stop="74118"/>
                    <exon start="74266" stop="74573"/>
                    <exon start="75374" stop="75612"/>
                    <exon start="76169" stop="76367"/>
                    <exon start="76563" stop="76640"/>
                    <exon start="76723" stop="76906"/>
                    <exon start="77756" stop="77922"/>
                    <exon start="78098" stop="78796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1905</number_coding_nucleotides>
                  <number_encoded_amino_acids>635</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSQQFTDETSAQKTNQKGSSYDVFELMDEEFERKRIEVKAMEALGCGFDFASDFRLKFVKRCPNGGRLVILDESNRRNVVIPGGVTIPDVSENIRCDKGDHIRFKSDVLEFNQMSELLNQKSSIHGKVPSGYLNAIFDLSGAWLNDSADAKYLAFDGYFVSLYYLHLTASPLVLHDQVKKAVPPHWDPASLSRFIQAYGTHIIVGMGVGGQDLLCVKQKPSSTVPPAELKAHLDDLGDCLFSDEASPLPEWKAKEGKKKVPEVFNRMLQSHTMQFTSITETSSKDGLTIIWSKRGGDVFAQSHSKWLQTVAAYPDGILFKLVPITSLLTGIPGSGYLSHAINLYLRYKPALEDLQCFLEFQVPSQWAPLFCELPLSHQRKVASCPALQFCLFGPKLCVRPTQVTSGQKPVIGLRLYLEGKKCNHLAIHVQHLSSLPNIMASKSVNNLTLCKPCQWRGSDDYESSDQFLDPVRWPRYSNVCSSVVKHDPSWMQGETSGVFVVTGAHLVSKGKWPKTVLHLRLLFTYLPNCTIRKTEWAATPEGTHRSSFLTNLSTTFTFTQRTKTDAAPKQLPAALNSGVYPDGPPVPVRSTKLLKYVDTAEIARGPYDTPGHWLVTAAKLVTEGGKIGLHVKFAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74055" e_stop="74573"/>
            <exon e_start="75374" e_stop="75612"/>
            <exon e_start="76169" e_stop="76367"/>
            <exon e_start="76563" e_stop="76640"/>
            <exon e_start="76723" e_stop="76906"/>
            <exon e_start="77756" e_stop="77922"/>
            <exon e_start="78098" e_stop="78796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.081" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74055" e_stop="74573" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="74574" i_stop="75373" i_length="800"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75374" e_stop="75612" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.876">
            <gDNA_intron_boundary i_start="75613" i_stop="76168" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76169" e_stop="76367" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76368" i_stop="76562" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76563" e_stop="76640" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.081">
            <gDNA_intron_boundary i_start="76641" i_stop="76722" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76723" e_stop="76906" e_length="184"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.690">
            <gDNA_intron_boundary i_start="76907" i_stop="77755" i_length="849"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77756" e_stop="77922" e_length="167"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77923" i_stop="78097" i_length="175"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="78098" e_stop="78796" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74055" stop="74573"/>
              <exon start="75374" stop="75612"/>
              <exon start="76169" stop="76272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74466" stop="74573"/>
              <exon start="75374" stop="75577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75469" stop="75612"/>
              <exon start="76169" stop="76367"/>
              <exon start="76563" stop="76640"/>
              <exon start="76723" stop="76906"/>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76877" stop="76906"/>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77756" stop="77922"/>
              <exon start="78098" stop="78504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77829" stop="77922"/>
              <exon start="78098" stop="78796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTTCCTTCTTTTTAGTATAACAAGATTAATGGAGTCAACAATTTACAGACGAAACATCTGGTCAAAAGTCAAACCTTTTCTCTTTCACTTTCCTTCTCCCGTCATCTACTTCTGACCAAAACCCCTCTACCTATCCCCAAACCTTATACCCCTCATTTTCTCAAATGGGTATTTCTTAAAATTTCCATTTTTTGTACTTTTTTTCAGCTCAAAAAACCAACCAGAAAGGCTCAAGCTACGACGTTTTTGAGCTGATGGATGAAGAATTCGAGAGGAAGAGGATTGAAGTTAAGGCTATGGAAGCTTTGGGCTGTGGGTTTGATTTTGCTAGCGATTTCAGGTTGAAGTTCGTAAAAAGATGTCCAAACGGGGGTAGATTGGTAATTTTGGATGAGAGTAATAGACGGAACGTCGTCATCCCCGGCGGCGTTACAATTCCCGATGTATCTGAAAATATCCGATGTGATAAAGGGGACCACATTCGTTTCAAGTCTGATGTTCTCGAATTTAATCAG : ATGTCAGAATTGCTAAATCAAAAATCATCAATACATGGAAAGGTTCCATCAGGCTATCTAAATGCCATTTTTGATTTAAGTGGAGCCTGGTTGAATGATTCAGCAGATGCTAAGTACCTCGCGTTTGATGGTTATTTTGTCTCGTTATACTATTTGCACCTGACAGCATCCCCATTAGTACTCCATGACCAAGTGAAGAAAGCTGTTCCACCGCATTGGGATCCAGCATCCTTATCCAG : ATTTATTCAGGCTTATGGGACACACATAATTGTGGGTATGGGTGTTGGAGGCCAGGACCTACTTTGTGTTAAGCAGAAACCATCTTCAACAGTTCCTCCTGCTGAGCTAAAAGCACACTTGGATGACCTCGGAGATTGTCTCTTTTCTGATGAAGCAAGCCCTCTGCCTGAGTGGAAGGCAAAAGAGGGTAAAAAGAAG : GTCCCCGAGGTATTCAATCGCATGTTGCAGTCGCATACCATGCAATTTACTAGCATAACAGAGACATCAAGCAAGGAT : GGTCTCACTATAATTTGGTCAAAAAGAGGTGGTGATGTGTTTGCACAAAGCCACTCGAAGTGGCTTCAGACTGTGGCTGCTTACCCTGATGGCATACTCTTCAAACTTGTACCGATTACTTCGCTCTTAACAGGAATACCAGGAAGCGGTTATCTCAGCCATGCAATAAATTTATATCTACGCT : ATAAGCCTGCTCTAGAGGATTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAG : GTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATGCAGGGCGAAACGAGTGGCGTCTTTGTGGTAACTGGTGCACACCTTGTCAGCAAAGGGAAGTGGCCTAAGACAGTGCTTCACCTGCGTCTACTTTTCACCTATCTTCCTAACTGCACAATACGAAAGACAGAGTGGGCAGCTACACCAGAGGGTACTCATAGGTCAAGTTTCTTAACAAATCTCAGCACAACTTTTACTTTCACTCAGCGGACAAAGACAGATGCTGCACCAAAGCAGCTTCCTGCTGCTCTTAACTCGGGCGTATATCCAGACGGACCTCCAGTACCAGTTCGATCAACAAAGCTGCTCAAGTATGTAGATACGGCTGAGATTGCACGAGGGCCATACGACACTCCTGGACATTGGTTGGTAACTGCTGCTAAGCTTGTTACAGAAGGTGGGAAGATAGGTTTGCATGTGAAGTTTGCTCTA</gDNA_template>
            <first_frame> L  P  S  F  F  L  V  *  Q  D  *  W  S  Q  Q  F  T  D  E  T  S  G  Q  K  S  N  L  F  S  F  T  F  L  L  P  S  S  T  S  D  Q  N  P  S  T  Y  P  Q  T  L  Y  P  S  F  S  Q  M  G  I  S  *  N  F  H  F  L  Y  F  F  S  A  Q  K  T  N  Q  K  G  S  S  Y  D  V  F  E  L  M  D  E  E  F  E  R  K  R  I  E  V  K  A  M  E  A  L  G  C  G  F  D  F  A  S  D  F  R  L  K  F  V  K  R  C  P  N  G  G  R  L  V  I  L  D  E  S  N  R  R  N  V  V  I  P  G  G  V  T  I  P  D  V  S  E  N  I  R  C  D  K  G  D  H  I  R  F  K  S  D  V  L  E  F  N  Q  :  M  S  E  L  L  N  Q  K  S  S  I  H  G  K  V  P  S  G  Y  L  N  A  I  F  D  L  S  G  A  W  L  N  D  S  A  D  A  K  Y  L  A  F  D  G  Y  F  V  S  L  Y  Y  L  H  L  T  A  S  P  L  V  L  H  D  Q  V  K  K  A  V  P  P  H  W  D  P  A  S  L  S  R :   F  I  Q  A  Y  G  T  H  I  I  V  G  M  G  V  G  G  Q  D  L  L  C  V  K  Q  K  P  S  S  T  V  P  P  A  E  L  K  A  H  L  D  D  L  G  D  C  L  F  S  D  E  A  S  P  L  P  E  W  K  A  K  E  G  K  K  K  :  V  P  E  V  F  N  R  M  L  Q  S  H  T  M  Q  F  T  S  I  T  E  T  S  S  K  D  :  G  L  T  I  I  W  S  K  R  G  G  D  V  F  A  Q  S  H  S  K  W  L  Q  T  V  A  A  Y  P  D  G  I  L  F  K  L  V  P  I  T  S  L  L  T  G  I  P  G  S  G  Y  L  S  H  A  I  N  L  Y  L  R   : Y  K  P  A  L  E  D  L  Q  C  F  L  E  F  Q  V  P  S  Q  W  A  P  L  F  C  E  L  P  L  S  H  Q  R  K  V  A  S  C  P  A  L  Q  F  C  L  F  G  P  K  L  C  V  R  P  T  Q  :  V  T  S  G  Q  K  P  V  I  G  L  R  L  Y  L  E  G  K  K  C  N  H  L  A  I  H  V  Q  H  L  S  S  L  P  N  I  M  A  S  K  S  V  N  N  L  T  L  C  K  P  C  Q  W  R  G  S  D  D  Y  E  S  S  D  Q  F  L  D  P  V  R  W  P  R  Y  S  N  V  C  S  S  V  V  K  H  D  P  S  W  M  Q  G  E  T  S  G  V  F  V  V  T  G  A  H  L  V  S  K  G  K  W  P  K  T  V  L  H  L  R  L  L  F  T  Y  L  P  N  C  T  I  R  K  T  E  W  A  A  T  P  E  G  T  H  R  S  S  F  L  T  N  L  S  T  T  F  T  F  T  Q  R  T  K  T  D  A  A  P  K  Q  L  P  A  A  L  N  S  G  V  Y  P  D  G  P  P  V  P  V  R  S  T  K  L  L  K  Y  V  D  T  A  E  I  A  R  G  P  Y  D  T  P  G  H  W  L  V  T  A  A  K  L  V  T  E  G  G  K  I  G  L  H  V  K  F  A  L </first_frame>
            <second_frame>  F  L  P  S  F  *  Y  N  K  I  N  G  V  N  N  L  Q  T  K  H  L  V  K  S  Q  T  F  S  L  S  L  S  F  S  R  H  L  L  L  T  K  T  P  L  P  I  P  K  P  Y  T  P  H  F  L  K  W  V  F  L  K  I  S  I  F  C  T  F  F  Q  L  K  K  P  T  R  K  A  Q  A  T  T  F  L  S  *  W  M  K  N  S  R  G  R  G  L  K  L  R  L  W  K  L  W  A  V  G  L  I  L  L  A  I  S  G  *  S  S  *  K  D  V  Q  T  G  V  D  W  *  F  W  M  R  V  I  D  G  T  S  S  S  P  A  A  L  Q  F  P  M  Y  L  K  I  S  D  V  I  K  G  T  T  F  V  S  S  L  M  F  S  N  L  I  R :   C  Q  N  C  *  I  K  N  H  Q  Y  M  E  R  F  H  Q  A  I  *  M  P  F  L  I  *  V  E  P  G  *  M  I  Q  Q  M  L  S  T  S  R  L  M  V  I  L  S  R  Y  T  I  C  T  *  Q  H  P  H  *  Y  S  M  T  K  *  R  K  L  F  H  R  I  G  I  Q  H  P  Y  P   : D  L  F  R  L  M  G  H  T  *  L  W  V  W  V  L  E  A  R  T  Y  F  V  L  S  R  N  H  L  Q  Q  F  L  L  L  S  *  K  H  T  W  M  T  S  E  I  V  S  F  L  M  K  Q  A  L  C  L  S  G  R  Q  K  R  V  K  R  R :   S  P  R  Y  S  I  A  C  C  S  R  I  P  C  N  L  L  A  *  Q  R  H  Q  A  R  M :   V  S  L  *  F  G  Q  K  E  V  V  M  C  L  H  K  A  T  R  S  G  F  R  L  W  L  L  T  L  M  A  Y  S  S  N  L  Y  R  L  L  R  S  *  Q  E  Y  Q  E  A  V  I  S  A  M  Q  *  I  Y  I  Y  A  :  I  S  L  L  *  R  I  Y  S  V  S  S  S  F  K  F  L  A  S  G  R  H  C  S  A  S  C  L  L  A  I  K  E  K  W  H  L  A  L  H  C  S  S  V  Y  S  A  Q  S  F  V  *  D  L  P  R :   L  Q  V  V  K  N  P  S  L  V  C  A  C  I  *  K  G  R  N  A  T  T  *  P  Y  M  Y  N  I  F  L  V  Y  Q  T  L  W  H  L  S  L  L  I  T  *  P  Y  A  S  H  V  N  G  E  A  P  M  I  M  N  L  A  T  N  S  *  I  L  S  D  G  R  D  I  P  T  C  A  H  L  *  L  S  M  I  Q  A  G  C  R  A  K  R  V  A  S  L  W  *  L  V  H  T  L  S  A  K  G  S  G  L  R  Q  C  F  T  C  V  Y  F  S  P  I  F  L  T  A  Q  Y  E  R  Q  S  G  Q  L  H  Q  R  V  L  I  G  Q  V  S  *  Q  I  S  A  Q  L  L  L  S  L  S  G  Q  R  Q  M  L  H  Q  S  S  F  L  L  L  L  T  R  A  Y  I  Q  T  D  L  Q  Y  Q  F  D  Q  Q  S  C  S  S  M  *  I  R  L  R  L  H  E  G  H  T  T  L  L  D  I  G  W  *  L  L  L  S  L  L  Q  K  V  G  R  *  V  C  M  *  S  L  L   </second_frame>
            <third_frame>   S  F  L  L  F  S  I  T  R  L  M  E  S  T  I  Y  R  R  N  I  W  S  K  V  K  P  F  L  F  H  F  P  S  P  V  I  Y  F  *  P  K  P  L  Y  L  S  P  N  L  I  P  L  I  F  S  N  G  Y  F  L  K  F  P  F  F  V  L  F  F  S  S  K  N  Q  P  E  R  L  K  L  R  R  F  *  A  D  G  *  R  I  R  E  E  E  D  *  S  *  G  Y  G  S  F  G  L  W  V  *  F  C  *  R  F  Q  V  E  V  R  K  K  M  S  K  R  G  *  I  G  N  F  G  *  E  *  *  T  E  R  R  H  P  R  R  R  Y  N  S  R  C  I  *  K  Y  P  M  *  *  R  G  P  H  S  F  Q  V  *  C  S  R  I  *  S   : D  V  R  I  A  K  S  K  I  I  N  T  W  K  G  S  I  R  L  S  K  C  H  F  *  F  K  W  S  L  V  E  *  F  S  R  C  *  V  P  R  V  *  W  L  F  C  L  V  I  L  F  A  P  D  S  I  P  I  S  T  P  *  P  S  E  E  S  C  S  T  A  L  G  S  S  I  L  I  Q  :  I  Y  S  G  L  W  D  T  H  N  C  G  Y  G  C  W  R  P  G  P  T  L  C  *  A  E  T  I  F  N  S  S  S  C  *  A  K  S  T  L  G  *  P  R  R  L  S  L  F  *  *  S  K  P  S  A  *  V  E  G  K  R  G  *  K  E   : G  P  R  G  I  Q  S  H  V  A  V  A  Y  H  A  I  Y  *  H  N  R  D  I  K  Q  G   : W  S  H  Y  N  L  V  K  K  R  W  *  C  V  C  T  K  P  L  E  V  A  S  D  C  G  C  L  P  *  W  H  T  L  Q  T  C  T  D  Y  F  A  L  N  R  N  T  R  K  R  L  S  Q  P  C  N  K  F  I  S  T  L :   *  A  C  S  R  G  F  T  V  F  P  R  V  S  S  S  *  P  V  G  A  I  V  L  R  A  A  S  *  P  S  K  K  S  G  I  L  P  C  I  A  V  L  F  I  R  P  K  A  L  C  E  T  Y  P   : G  Y  K  W  S  K  T  R  H  W  F  A  L  V  F  R  R  E  E  M  Q  P  L  S  H  T  C  T  T  S  F  *  F  T  K  H  Y  G  I  *  V  C  *  *  P  N  L  M  Q  A  M  S  M  A  R  L  R  *  L  *  I  *  R  P  I  L  R  S  C  Q  M  A  E  I  F  Q  R  V  L  I  C  S  *  A  *  S  K  L  D  A  G  R  N  E  W  R  L  C  G  N  W  C  T  P  C  Q  Q  R  E  V  A  *  D  S  A  S  P  A  S  T  F  H  L  S  S  *  L  H  N  T  K  D  R  V  G  S  Y  T  R  G  Y  S  *  V  K  F  L  N  K  S  Q  H  N  F  Y  F  H  S  A  D  K  D  R  C  C  T  K  A  A  S  C  C  S  *  L  G  R  I  S  R  R  T  S  S  T  S  S  I  N  K  A  A  Q  V  C  R  Y  G  *  D  C  T  R  A  I  R  H  S  W  T  L  V  G  N  C  C  *  A  C  Y  R  R  W  E  D  R  F  A  C  E  V  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74238" stop="74573"/>
                    <exon start="75374" stop="75612"/>
                    <exon start="76169" stop="76367"/>
                    <exon start="76563" stop="76640"/>
                    <exon start="76723" stop="76906"/>
                    <exon start="77756" stop="77922"/>
                    <exon start="78098" stop="78796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1902</number_coding_nucleotides>
                  <number_encoded_amino_acids>634</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFHFLYFFSAQKTNQKGSSYDVFELMDEEFERKRIEVKAMEALGCGFDFASDFRLKFVKRCPNGGRLVILDESNRRNVVIPGGVTIPDVSENIRCDKGDHIRFKSDVLEFNQMSELLNQKSSIHGKVPSGYLNAIFDLSGAWLNDSADAKYLAFDGYFVSLYYLHLTASPLVLHDQVKKAVPPHWDPASLSRFIQAYGTHIIVGMGVGGQDLLCVKQKPSSTVPPAELKAHLDDLGDCLFSDEASPLPEWKAKEGKKKVPEVFNRMLQSHTMQFTSITETSSKDGLTIIWSKRGGDVFAQSHSKWLQTVAAYPDGILFKLVPITSLLTGIPGSGYLSHAINLYLRYKPALEDLQCFLEFQVPSQWAPLFCELPLSHQRKVASCPALQFCLFGPKLCVRPTQVTSGQKPVIGLRLYLEGKKCNHLAIHVQHLSSLPNIMASKSVNNLTLCKPCQWRGSDDYESSDQFLDPVRWPRYSNVCSSVVKHDPSWMQGETSGVFVVTGAHLVSKGKWPKTVLHLRLLFTYLPNCTIRKTEWAATPEGTHRSSFLTNLSTTFTFTQRTKTDAAPKQLPAALNSGVYPDGPPVPVRSTKLLKYVDTAEIARGPYDTPGHWLVTAAKLVTEGGKIGLHVKFAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77775" e_stop="78364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77775" e_stop="78364" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77775" stop="78364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACAGTGTTTCCTCGAGTTTCAAGTTCCTAGCCAGTGGGCGCCATTGTTCTGCGAGCTGCCTCTTAGCCATCAAAGAAAAGTGGCATCTTGCCCTGCATTGCAGTTCTGTTTATTCGGCCCAAAGCTTTGTGTGAGACCTACCCAGGTACTTCTTTGGTGTTTCTTTCTTAGCAAAAGGACCGCTGCTTTATTACAAAAATAATAAAAGTTGAAACTATATGTGCTTCATTCCAATGAGGTATTGGTCTTGCCATGGCTTCTAATGCACTAGTATTGATGTTCATGATGACACCTAATCGATATGTTCTTCTTATATGTAGGTTACAAGTGGTCAAAAACCCGTCATTGGTTTGCGCTTGTATTTAGAAGGGAAGAAATGCAACCACTTAGCCATACATGTACAACATCTTTCTAGTTTACCAAACATTATGGCATCTAAGTCTGTTAATAACCTAACCTTATGCAAGCCATGTCAATGGCGAGGCTCCGATGATTATGAATCTAGCGACCAATTCTTAGATCCTGTCAGATGGCCGAGATATTCCAACGTGTGCTCATCTGTAGTTAAGCATGATCCAAGCTGGATG</gDNA_template>
            <first_frame> F  T  V  F  P  R  V  S  S  S  *  P  V  G  A  I  V  L  R  A  A  S  *  P  S  K  K  S  G  I  L  P  C  I  A  V  L  F  I  R  P  K  A  L  C  E  T  Y  P  G  T  S  L  V  F  L  S  *  Q  K  D  R  C  F  I  T  K  I  I  K  V  E  T  I  C  A  S  F  Q  *  G  I  G  L  A  M  A  S  N  A  L  V  L  M  F  M  M  T  P  N  R  Y  V  L  L  I  C  R  L  Q  V  V  K  N  P  S  L  V  C  A  C  I  *  K  G  R  N  A  T  T  *  P  Y  M  Y  N  I  F  L  V  Y  Q  T  L  W  H  L  S  L  L  I  T  *  P  Y  A  S  H  V  N  G  E  A  P  M  I  M  N  L  A  T  N  S  *  I  L  S  D  G  R  D  I  P  T  C  A  H  L  *  L  S  M  I  Q  A  G   </first_frame>
            <second_frame>  L  Q  C  F  L  E  F  Q  V  P  S  Q  W  A  P  L  F  C  E  L  P  L  S  H  Q  R  K  V  A  S  C  P  A  L  Q  F  C  L  F  G  P  K  L  C  V  R  P  T  Q  V  L  L  W  C  F  F  L  S  K  R  T  A  A  L  L  Q  K  *  *  K  L  K  L  Y  V  L  H  S  N  E  V  L  V  L  P  W  L  L  M  H  *  Y  *  C  S  *  *  H  L  I  D  M  F  F  L  Y  V  G  Y  K  W  S  K  T  R  H  W  F  A  L  V  F  R  R  E  E  M  Q  P  L  S  H  T  C  T  T  S  F  *  F  T  K  H  Y  G  I  *  V  C  *  *  P  N  L  M  Q  A  M  S  M  A  R  L  R  *  L  *  I  *  R  P  I  L  R  S  C  Q  M  A  E  I  F  Q  R  V  L  I  C  S  *  A  *  S  K  L  D  </second_frame>
            <third_frame>   Y  S  V  S  S  S  F  K  F  L  A  S  G  R  H  C  S  A  S  C  L  L  A  I  K  E  K  W  H  L  A  L  H  C  S  S  V  Y  S  A  Q  S  F  V  *  D  L  P  R  Y  F  F  G  V  S  F  L  A  K  G  P  L  L  Y  Y  K  N  N  K  S  *  N  Y  M  C  F  I  P  M  R  Y  W  S  C  H  G  F  *  C  T  S  I  D  V  H  D  D  T  *  S  I  C  S  S  Y  M  *  V  T  S  G  Q  K  P  V  I  G  L  R  L  Y  L  E  G  K  K  C  N  H  L  A  I  H  V  Q  H  L  S  S  L  P  N  I  M  A  S  K  S  V  N  N  L  T  L  C  K  P  C  Q  W  R  G  S  D  D  Y  E  S  S  D  Q  F  L  D  P  V  R  W  P  R  Y  S  N  V  C  S  S  V  V  K  H  D  P  S  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78098" stop="78364"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTSGQKPVIGLRLYLEGKKCNHLAIHVQHLSSLPNIMASKSVNNLTLCKPCQWRGSDDYESSDQFLDPVRWPRYSNVCSSVVKHDPSWM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77776" stop="77979"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQCFLEFQVPSQWAPLFCELPLSHQRKVASCPALQFCLFGPKLCVRPTQVLLWCFFLSKRTAALLQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="78811" PGL_stop="79037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78811" e_stop="79037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="78811" e_stop="79037" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78811" stop="79037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATCATAATTTCTTGTGTGTACATATTCTGAGGTAGCCTTGTCCTTTTCTTTATATCATTTTTATTCAGTTACATTTAGTCTTATCAGCTTCCAATATCTTGATGATATATCATATTGTTTAATTTATCCAAGAAATGGCCAACAGGGGAGGAAAATGTTATAGTATTGTACAGAAGAATTTAGTGGAAGAATCGATTTATTTTTTGTTCTTTCCACCTTTTCAA</gDNA_template>
            <first_frame> R  I  I  I  S  C  V  Y  I  F  *  G  S  L  V  L  F  F  I  S  F  L  F  S  Y  I  *  S  Y  Q  L  P  I  S  *  *  Y  I  I  L  F  N  L  S  K  K  W  P  T  G  E  E  N  V  I  V  L  Y  R  R  I  *  W  K  N  R  F  I  F  C  S  F  H  L  F   </first_frame>
            <second_frame>  E  S  *  F  L  V  C  T  Y  S  E  V  A  L  S  F  S  L  Y  H  F  Y  S  V  T  F  S  L  I  S  F  Q  Y  L  D  D  I  S  Y  C  L  I  Y  P  R  N  G  Q  Q  G  R  K  M  L  *  Y  C  T  E  E  F  S  G  R  I  D  L  F  F  V  L  S  T  F  S  </second_frame>
            <third_frame>   N  H  N  F  L  C  V  H  I  L  R  *  P  C  P  F  L  Y  I  I  F  I  Q  L  H  L  V  L  S  A  S  N  I  L  M  I  Y  H  I  V  *  F  I  Q  E  M  A  N  R  G  G  K  C  Y  S  I  V  Q  K  N  L  V  E  E  S  I  Y  F  L  F  F  P  P  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0109D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="93459" PGL_stop="92547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93459" e_stop="93359"/>
            <exon e_start="93002" e_stop="92547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.083" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93459" e_stop="93359" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.083" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93358" i_stop="93003" i_length="356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93002" e_stop="92547" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93459" stop="93359"/>
              <exon start="93002" stop="92547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93454" stop="93359"/>
              <exon start="93002" stop="92612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93454" stop="93359"/>
              <exon start="93002" stop="92612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGGTGTTATTCCTCTTGTTGATGCAGATATACAAACCTCTGGTGCAAAAGCTGCTTCTTGTGCTCAATTAGCTTCACTGGCCACTTCTTCTACTAAAG : TTTATAGTGACCAAGGTGCACCAGCATCATTTAAAGTTCCTGCTGGAGCAGTTATTCCATTTGGTTCCATGGAAACGGCATTGGAAACGAACAAGTTAATGGAGACCTTCACATTGCTTGTTGAGCAGATAGAAACAGCTGAAATTGATGGCGGTGAACTTGATAAACACTGTGAGGATCTCCAGAAGTTAATATCTTCGTTATTGCCTGGACAAGATGTCATCGAAAGCTTGGGAGAAATATTTCCCGGTAATGCACGTTTAATAGTGCGTTCAAGTGCTAATGTCGAGGACTTGGCGGGGATGTCAGCAGCCGGACTTTATGATTCAATTCCTAATGTTAGCCCTTCAGATCCGGTAAGGTTTGGACATGCTGTAGCCCGTGTTTGGGCCTCGTTGTATACTAGAAGAGCAGTACTGAGCCGCAGAGCTGCTGGTGTGTCCCAGAAAGATGCTA</gDNA_template>
            <first_frame> *  R  C  Y  S  S  C  *  C  R  Y  T  N  L  W  C  K  S  C  F  L  C  S  I  S  F  T  G  H  F  F  Y  *  S :   L  *  *  P  R  C  T  S  I  I  *  S  S  C  W  S  S  Y  S  I  W  F  H  G  N  G  I  G  N  E  Q  V  N  G  D  L  H  I  A  C  *  A  D  R  N  S  *  N  *  W  R  *  T  *  *  T  L  *  G  S  P  E  V  N  I  F  V  I  A  W  T  R  C  H  R  K  L  G  R  N  I  S  R  *  C  T  F  N  S  A  F  K  C  *  C  R  G  L  G  G  D  V  S  S  R  T  L  *  F  N  S  *  C  *  P  F  R  S  G  K  V  W  T  C  C  S  P  C  L  G  L  V  V  Y  *  K  S  S  T  E  P  Q  S  C  W  C  V  P  E  R  C   </first_frame>
            <second_frame>  R  G  V  I  P  L  V  D  A  D  I  Q  T  S  G  A  K  A  A  S  C  A  Q  L  A  S  L  A  T  S  S  T  K   : V  Y  S  D  Q  G  A  P  A  S  F  K  V  P  A  G  A  V  I  P  F  G  S  M  E  T  A  L  E  T  N  K  L  M  E  T  F  T  L  L  V  E  Q  I  E  T  A  E  I  D  G  G  E  L  D  K  H  C  E  D  L  Q  K  L  I  S  S  L  L  P  G  Q  D  V  I  E  S  L  G  E  I  F  P  G  N  A  R  L  I  V  R  S  S  A  N  V  E  D  L  A  G  M  S  A  A  G  L  Y  D  S  I  P  N  V  S  P  S  D  P  V  R  F  G  H  A  V  A  R  V  W  A  S  L  Y  T  R  R  A  V  L  S  R  R  A  A  G  V  S  Q  K  D  A  </second_frame>
            <third_frame>   E  V  L  F  L  L  L  M  Q  I  Y  K  P  L  V  Q  K  L  L  L  V  L  N  *  L  H  W  P  L  L  L  L  K  :  F  I  V  T  K  V  H  Q  H  H  L  K  F  L  L  E  Q  L  F  H  L  V  P  W  K  R  H  W  K  R  T  S  *  W  R  P  S  H  C  L  L  S  R  *  K  Q  L  K  L  M  A  V  N  L  I  N  T  V  R  I  S  R  S  *  Y  L  R  Y  C  L  D  K  M  S  S  K  A  W  E  K  Y  F  P  V  M  H  V  *  *  C  V  Q  V  L  M  S  R  T  W  R  G  C  Q  Q  P  D  F  M  I  Q  F  L  M  L  A  L  Q  I  R  *  G  L  D  M  L  *  P  V  F  G  P  R  C  I  L  E  E  Q  Y  *  A  A  E  L  L  V  C  P  R  K  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93458" stop="93359"/>
                    <exon start="93002" stop="92548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGVIPLVDADIQTSGAKAASCAQLASLATSSTKVYSDQGAPASFKVPAGAVIPFGSMETALETNKLMETFTLLVEQIETAEIDGGELDKHCEDLQKLISSLLPGQDVIESLGEIFPGNARLIVRSSANVEDLAGMSAAGLYDSIPNVSPSDPVRFGHAVARVWASLYTRRAVLSRRAAGVSQKDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="96368" PGL_stop="93751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96368" e_stop="96220"/>
            <exon e_start="96131" e_stop="96013"/>
            <exon e_start="95444" e_stop="95374"/>
            <exon e_start="95239" e_stop="95122"/>
            <exon e_start="94731" e_stop="94645"/>
            <exon e_start="94536" e_stop="94450"/>
            <exon e_start="93969" e_stop="93893"/>
            <exon e_start="93792" e_stop="93751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.242" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96368" e_stop="96220" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96219" i_stop="96132" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96131" e_stop="96013" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.885">
            <gDNA_intron_boundary i_start="96012" i_stop="95445" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95444" e_stop="95374" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.242">
            <gDNA_intron_boundary i_start="95373" i_stop="95240" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95239" e_stop="95122" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95121" i_stop="94732" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94731" e_stop="94645" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="94644" i_stop="94537" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94536" e_stop="94450" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94449" i_stop="93970" i_length="480"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93969" e_stop="93893" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93892" i_stop="93793" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="0.976">
            <gDNA_exon_boundary e_start="93792" e_stop="93751" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96368" stop="96220"/>
              <exon start="96131" stop="96013"/>
              <exon start="95444" stop="95374"/>
              <exon start="95239" stop="95122"/>
              <exon start="94731" stop="94645"/>
              <exon start="94536" stop="94450"/>
              <exon start="93969" stop="93893"/>
              <exon start="93792" stop="93751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACGTTAGCTCTTGGAATGATCCAATTGGAGCACTTACAGTAGGAATCCAACAGCTAGGCCTATCTGGTTGGAAGCCCGAGGAGTGCAAAGCTGTTGGAAATGAACTTCTGTCATGGAAAGAAAGGGGTATTTCAGAAATTGAAG : GCAGCGAAGATGGTAAGACTATATGGGCATTAAGACTAAAAGCGACTCTTGATAGAAGTCGAAGGTTAACTGAGGAGTATTCCGAGACACTTATCCAAATATTCCCTGAAAAAGTACAG : ATTTTAGGAAAATCTTTGGGAATTCCTGAAAATACTGTCAGAACATTTACTGAAGCTGAAATTCGAGCAGG : TGTGGTTTTTCAGGTTTCGAAGTTTGCTACTCTACTTTTGAAGGCTGTTAGAAGGACAATTGGGTCATCGGGATGGGACGTTCTCGTTCCAGGAGATGCTTTTGGAGAGCTAATACAG : GTGGATAGAATTATCCCCGGCACTCTACCATCATCTGCAACAGGACCTGTTATTCTTGTAGTGAACAAAGCTGATGGAGATGAAGAG : GTGACTGCCGCAGGGAGTAACATATCTGGAGTTGTACTTCTACAGGAGCTACCACATTTATCTCATCTAGGTGTTAGGGCCCGGCAG : GAAAAGGTTGTTTTTGTGACCTGCGATGACGATGACAAAGTTTCTGATGTAAGACAGCTACTAGGAAAATATGTGAG : GTTAGAAGCATCATCAACTGGTGTAAAGTTAACTGCTTCTTC</gDNA_template>
            <first_frame> E  K  R  *  L  L  E  *  S  N  W  S  T  Y  S  R  N  P  T  A  R  P  I  W  L  E  A  R  G  V  Q  S  C  W  K  *  T  S  V  M  E  R  K  G  Y  F  R  N  *  R :   Q  R  R  W  *  D  Y  M  G  I  K  T  K  S  D  S  *  *  K  S  K  V  N  *  G  V  F  R  D  T  Y  P  N  I  P  *  K  S  T   : D  F  R  K  I  F  G  N  S  *  K  Y  C  Q  N  I  Y  *  S  *  N  S  S  R  :  C  G  F  S  G  F  E  V  C  Y  S  T  F  E  G  C  *  K  D  N  W  V  I  G  M  G  R  S  R  S  R  R  C  F  W  R  A  N  T   : G  G  *  N  Y  P  R  H  S  T  I  I  C  N  R  T  C  Y  S  C  S  E  Q  S  *  W  R  *  R   : G  D  C  R  R  E  *  H  I  W  S  C  T  S  T  G  A  T  T  F  I  S  S  R  C  *  G  P  A   : G  K  G  C  F  C  D  L  R  *  R  *  Q  S  F  *  C  K  T  A  T  R  K  I  C  E  :  V  R  S  I  I  N  W  C  K  V  N  C  F  F </first_frame>
            <second_frame>  K  N  V  S  S  W  N  D  P  I  G  A  L  T  V  G  I  Q  Q  L  G  L  S  G  W  K  P  E  E  C  K  A  V  G  N  E  L  L  S  W  K  E  R  G  I  S  E  I  E   : G  S  E  D  G  K  T  I  W  A  L  R  L  K  A  T  L  D  R  S  R  R  L  T  E  E  Y  S  E  T  L  I  Q  I  F  P  E  K  V  Q  :  I  L  G  K  S  L  G  I  P  E  N  T  V  R  T  F  T  E  A  E  I  R  A  G :   V  V  F  Q  V  S  K  F  A  T  L  L  L  K  A  V  R  R  T  I  G  S  S  G  W  D  V  L  V  P  G  D  A  F  G  E  L  I  Q  :  V  D  R  I  I  P  G  T  L  P  S  S  A  T  G  P  V  I  L  V  V  N  K  A  D  G  D  E  E  :  V  T  A  A  G  S  N  I  S  G  V  V  L  L  Q  E  L  P  H  L  S  H  L  G  V  R  A  R  Q  :  E  K  V  V  F  V  T  C  D  D  D  D  K  V  S  D  V  R  Q  L  L  G  K  Y  V  R :   L  E  A  S  S  T  G  V  K  L  T  A  S   </second_frame>
            <third_frame>   K  T  L  A  L  G  M  I  Q  L  E  H  L  Q  *  E  S  N  S  *  A  Y  L  V  G  S  P  R  S  A  K  L  L  E  M  N  F  C  H  G  K  K  G  V  F  Q  K  L  K  :  A  A  K  M  V  R  L  Y  G  H  *  D  *  K  R  L  L  I  E  V  E  G  *  L  R  S  I  P  R  H  L  S  K  Y  S  L  K  K  Y  R :   F  *  E  N  L  W  E  F  L  K  I  L  S  E  H  L  L  K  L  K  F  E  Q   : V  W  F  F  R  F  R  S  L  L  L  Y  F  *  R  L  L  E  G  Q  L  G  H  R  D  G  T  F  S  F  Q  E  M  L  L  E  S  *  Y  R :   W  I  E  L  S  P  A  L  Y  H  H  L  Q  Q  D  L  L  F  L  *  *  T  K  L  M  E  M  K  R :   *  L  P  Q  G  V  T  Y  L  E  L  Y  F  Y  R  S  Y  H  I  Y  L  I  *  V  L  G  P  G  R :   K  R  L  F  L  *  P  A  M  T  M  T  K  F  L  M  *  D  S  Y  *  E  N  M  *   : G  *  K  H  H  Q  L  V  *  S  *  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96367" stop="96220"/>
                    <exon start="96131" stop="96013"/>
                    <exon start="95444" stop="95374"/>
                    <exon start="95239" stop="95122"/>
                    <exon start="94731" stop="94645"/>
                    <exon start="94536" stop="94450"/>
                    <exon start="93969" stop="93893"/>
                    <exon start="93792" stop="93753"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNVSSWNDPIGALTVGIQQLGLSGWKPEECKAVGNELLSWKERGISEIEGSEDGKTIWALRLKATLDRSRRLTEEYSETLIQIFPEKVQILGKSLGIPENTVRTFTEAEIRAGVVFQVSKFATLLLKAVRRTIGSSGWDVLVPGDAFGELIQVDRIIPGTLPSSATGPVILVVNKADGDEEVTAAGSNISGVVLLQELPHLSHLGVRARQEKVVFVTCDDDDKVSDVRQLLGKYVRLEASSTGVKLTAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="101842" PGL_stop="96927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101842" e_stop="101642"/>
            <exon e_start="100259" e_stop="100173"/>
            <exon e_start="100103" e_stop="99972"/>
            <exon e_start="99129" e_stop="99004"/>
            <exon e_start="98892" e_stop="98714"/>
            <exon e_start="98016" e_stop="97932"/>
            <exon e_start="97054" e_stop="96927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="101842" e_stop="101642" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.994">
            <gDNA_intron_boundary i_start="101641" i_stop="100260" i_length="1382"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100259" e_stop="100173" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100172" i_stop="100104" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100103" e_stop="99972" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99971" i_stop="99130" i_length="842"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99129" e_stop="99004" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.897">
            <gDNA_intron_boundary i_start="99003" i_stop="98893" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98892" e_stop="98714" e_length="179"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="98713" i_stop="98017" i_length="697"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98016" e_stop="97932" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.882" acc_prob="0.955">
            <gDNA_intron_boundary i_start="97931" i_stop="97055" i_length="877"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="97054" e_stop="96927" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101842" stop="101642"/>
              <exon start="100259" stop="100173"/>
              <exon start="100103" stop="99972"/>
              <exon start="99129" stop="99004"/>
              <exon start="98892" stop="98714"/>
              <exon start="98016" stop="97932"/>
              <exon start="97054" stop="97020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101778" stop="101642"/>
              <exon start="100259" stop="100173"/>
              <exon start="100103" stop="99996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101672" stop="101642"/>
              <exon start="100259" stop="100173"/>
              <exon start="100103" stop="99972"/>
              <exon start="99129" stop="99004"/>
              <exon start="98892" stop="98714"/>
              <exon start="98016" stop="97932"/>
              <exon start="97054" stop="96927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100218" stop="100173"/>
              <exon start="100103" stop="99972"/>
              <exon start="99129" stop="99004"/>
              <exon start="98892" stop="98714"/>
              <exon start="98016" stop="97932"/>
              <exon start="97054" stop="96960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTACTAGCCAGGCAGTTGTTCCTGACGTAGTAACAAGTCCATTTGTGGAGCAATGGCAAGGGAGGGCTGCATCTTTTGTACGTTCAAACGACCAGCTGGATTCTGATAAAAATAGGAAGTGGGACACATCAGGTCTCACCGGAATTTCCCTAAAGCTTGTTGAAGGTGATAAGAATGCTCGAAACTGGTGGCGGAAG : CTTGAGGTTGTTCGAGAACTAGTTGTTGAAAACATGGATAGTTCACATCGCTTGGAGGCTCTCACGTATGCAGCTGTCTATCTAAAG : TGGATAAATACAGGGCAAATTCCTTGCCTTGAAGATGGGGGTCACCATCGACCAAATAGACATGCAGAGATTTCCAGGCTTATATTTCGTGAAGTAGAAAAAGTCTTGAGCAGGAAAGACACTACACTTCAG : GAAATACTTGTGATCCGCAAGATGCAACCGTGCTTGCCTTCTTTTAAAGCAGAATTCACTGCATCCGTTCCTTTAACGAGAATCAGGGACATCGCTCATAGGAATGATATTCCGCATGATCTTAAG : CAAGAAATCAAACATACTATACAAAACAAGCTCCATAGAAATGCTGGCCCTGAAGATCTAGTATCCACAGAAGCAATGCTCGAAAGAATTACCAAACAACCTGGACAATACAGTGAGGCATTTGTAGAGCAATTCAAGATTTTCCACAATGAACTAAAAGATTTCTTCAATGCTGGGAG : TCTTGATGAACAGCTGGAATCTATAAGAGAATCACTCGACGGAAGTAGCTTGACAATGCTTTCATCATTCTTGGAGTCCAAAAAG : GAATTGGTTAGATTGGATGAAAAACATAATGTTTCAGAGACTGAAAGAACTGGATTTCTAGTCAGGACTATCAACTCTCTGAATGCTCTTCGTGAAGTAATTTCCAAGGGTCTTGAAAGTGGCCTCCG</gDNA_template>
            <first_frame> T  I  T  S  Q  A  V  V  P  D  V  V  T  S  P  F  V  E  Q  W  Q  G  R  A  A  S  F  V  R  S  N  D  Q  L  D  S  D  K  N  R  K  W  D  T  S  G  L  T  G  I  S  L  K  L  V  E  G  D  K  N  A  R  N  W  W  R  K  :  L  E  V  V  R  E  L  V  V  E  N  M  D  S  S  H  R  L  E  A  L  T  Y  A  A  V  Y  L  K  :  W  I  N  T  G  Q  I  P  C  L  E  D  G  G  H  H  R  P  N  R  H  A  E  I  S  R  L  I  F  R  E  V  E  K  V  L  S  R  K  D  T  T  L  Q  :  E  I  L  V  I  R  K  M  Q  P  C  L  P  S  F  K  A  E  F  T  A  S  V  P  L  T  R  I  R  D  I  A  H  R  N  D  I  P  H  D  L  K  :  Q  E  I  K  H  T  I  Q  N  K  L  H  R  N  A  G  P  E  D  L  V  S  T  E  A  M  L  E  R  I  T  K  Q  P  G  Q  Y  S  E  A  F  V  E  Q  F  K  I  F  H  N  E  L  K  D  F  F  N  A  G  S :   L  D  E  Q  L  E  S  I  R  E  S  L  D  G  S  S  L  T  M  L  S  S  F  L  E  S  K  K  :  E  L  V  R  L  D  E  K  H  N  V  S  E  T  E  R  T  G  F  L  V  R  T  I  N  S  L  N  A  L  R  E  V  I  S  K  G  L  E  S  G  L   </first_frame>
            <second_frame>  Q  L  L  A  R  Q  L  F  L  T  *  *  Q  V  H  L  W  S  N  G  K  G  G  L  H  L  L  Y  V  Q  T  T  S  W  I  L  I  K  I  G  S  G  T  H  Q  V  S  P  E  F  P  *  S  L  L  K  V  I  R  M  L  E  T  G  G  G  S :   L  R  L  F  E  N  *  L  L  K  T  W  I  V  H  I  A  W  R  L  S  R  M  Q  L  S  I  *  S :   G  *  I  Q  G  K  F  L  A  L  K  M  G  V  T  I  D  Q  I  D  M  Q  R  F  P  G  L  Y  F  V  K  *  K  K  S  *  A  G  K  T  L  H  F  R :   K  Y  L  *  S  A  R  C  N  R  A  C  L  L  L  K  Q  N  S  L  H  P  F  L  *  R  E  S  G  T  S  L  I  G  M  I  F  R  M  I  L  S :   K  K  S  N  I  L  Y  K  T  S  S  I  E  M  L  A  L  K  I  *  Y  P  Q  K  Q  C  S  K  E  L  P  N  N  L  D  N  T  V  R  H  L  *  S  N  S  R  F  S  T  M  N  *  K  I  S  S  M  L  G   : V  L  M  N  S  W  N  L  *  E  N  H  S  T  E  V  A  *  Q  C  F  H  H  S  W  S  P  K  R :   N  W  L  D  W  M  K  N  I  M  F  Q  R  L  K  E  L  D  F  *  S  G  L  S  T  L  *  M  L  F  V  K  *  F  P  R  V  L  K  V  A  S  </second_frame>
            <third_frame>   N  Y  *  P  G  S  C  S  *  R  S  N  K  S  I  C  G  A  M  A  R  E  G  C  I  F  C  T  F  K  R  P  A  G  F  *  *  K  *  E  V  G  H  I  R  S  H  R  N  F  P  K  A  C  *  R  *  *  E  C  S  K  L  V  A  E   : A  *  G  C  S  R  T  S  C  *  K  H  G  *  F  T  S  L  G  G  S  H  V  C  S  C  L  S  K   : V  D  K  Y  R  A  N  S  L  P  *  R  W  G  S  P  S  T  K  *  T  C  R  D  F  Q  A  Y  I  S  *  S  R  K  S  L  E  Q  E  R  H  Y  T  S   : G  N  T  C  D  P  Q  D  A  T  V  L  A  F  F  *  S  R  I  H  C  I  R  S  F  N  E  N  Q  G  H  R  S  *  E  *  Y  S  A  *  S  *   : A  R  N  Q  T  Y  Y  T  K  Q  A  P  *  K  C  W  P  *  R  S  S  I  H  R  S  N  A  R  K  N  Y  Q  T  T  W  T  I  Q  *  G  I  C  R  A  I  Q  D  F  P  Q  *  T  K  R  F  L  Q  C  W  E  :  S  *  *  T  A  G  I  Y  K  R  I  T  R  R  K  *  L  D  N  A  F  I  I  L  G  V  Q  K   : G  I  G  *  I  G  *  K  T  *  C  F  R  D  *  K  N  W  I  S  S  Q  D  Y  Q  L  S  E  C  S  S  *  S  N  F  Q  G  S  *  K  W  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101842" stop="101642"/>
                    <exon start="100259" stop="100173"/>
                    <exon start="100103" stop="99972"/>
                    <exon start="99129" stop="99004"/>
                    <exon start="98892" stop="98714"/>
                    <exon start="98016" stop="97932"/>
                    <exon start="97054" stop="96929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TITSQAVVPDVVTSPFVEQWQGRAASFVRSNDQLDSDKNRKWDTSGLTGISLKLVEGDKNARNWWRKLEVVRELVVENMDSSHRLEALTYAAVYLKWINTGQIPCLEDGGHHRPNRHAEISRLIFREVEKVLSRKDTTLQEILVIRKMQPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLVSTEAMLERITKQPGQYSEAFVEQFKIFHNELKDFFNAGSLDEQLESIRESLDGSSLTMLSSFLESKKELVRLDEKHNVSETERTGFLVRTINSLNALREVISKGLESGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="109108" PGL_stop="107194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109108" e_stop="108228"/>
            <exon e_start="108117" e_stop="107836"/>
            <exon e_start="107614" e_stop="107194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.626" e_score="0.996"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109108" e_stop="108228" e_length="881"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108227" i_stop="108118" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="108117" e_stop="107836" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.626">
            <gDNA_intron_boundary i_start="107835" i_stop="107615" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="107614" e_stop="107194" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109108" stop="108711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109103" stop="108551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109073" stop="108527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109048" stop="108475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109048" stop="108519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109048" stop="108526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109047" stop="108599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108994" stop="108389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108893" stop="108239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108891" stop="108456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108849" stop="108273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108252" stop="108228"/>
              <exon start="108117" stop="107836"/>
              <exon start="107614" stop="107194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108040" stop="107836"/>
              <exon start="107614" stop="107194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107555" stop="107202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107555" stop="107202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGATTGATCATAATCACATCAAGTCCATGTTCATG : GACCTATTTGGTGCGGGTACTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGATAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAGAAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGCATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACTACATCATCCCAAAGGGCTCACAG : GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTACTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACATGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGTTGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATTGGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTACCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATTGCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCTAAATAATCATATATATGTATATTG</gDNA_template>
            <first_frame> L  W  I  T  I  H  L  C  L  C  Q  F  *  C  W  L  I  S  *  Q  K  Y  V  A  K  E  A  K  N  F  H  Q  V  H  H  H  G  Q  L  L  E  T  F  S  C  *  V  Q  N  L  I  Y  H  *  P  I  L  Q  K  I  M  V  Q  L  *  V  *  S  *  V  K  *  Q  Q  *  S  F  P  H  Q  P  L  Q  N  K  S  L  K  L  K  I  K  P  F  H  L  D  L  L  L  M  L  F  K  R  T  T  I  T  N  F  L  W  H  G  F  L  F  V  L  N  G  E  R  F  E  E  Y  *  T  L  T  S  Y  L  P  I  S  L  M  Q  I  N  I  *  G  L  K  R  *  N  N  *  L  I  I  V  T  N  V  V  N  K  V  K  L  W  I  *  V  K  L  F  S  R  L  V  L  I  C  C  Q  T  H  F  S  P  R  I  W  L  I  L  F  Q  I  Q  R  *  S  *  R  K  L  Y  G  V  S  W  L  R  *  G  S  L  I  *  *  I  F  S  P  Y  L  K  K  L  I  F  K  E  *  D  V  A  L  S  F  I  L  V  S  C  L  N  F  L  M  I  *  S  T  N  D  W  R  K  R  K  D  Q  D  S  W  K  R  A  M  F  L  K  Y  F  S  I  L  L  K  K  I  L  K  R  L  I  I  I  T  S  S  P  C  S  W :   T  Y  L  V  R  V  L  I  Q  P  Q  A  H  W  N  G  Q  W  Q  N  C  L  N  N  L  R  *  *  K  K  L  K  L  N  L  L  K  S  L  G  K  E  N  *  *  K  K  L  M  F  F  D  S  L  T  C  N  A  L  S  K  K  H  *  D  C  I  H  R  F  R  S  *  F  R  A  K  *  T  K  M  L  N  C  V  T  T  S  S  Q  R  A  H  R :   Y  *  L  M  C  G  R  L  V  E  I  L  L  F  G  R  I  L  *  S  L  N  L  R  D  F  *  I  W  I  W  T  C  E  D  K  I  L  S  *  F  H  L  V  L  D  E  E  Y  A  L  G  C  H  *  H  *  G  *  F  Q  *  C  W  A  H  C  *  I  H  S  I  G  N  L  M  Q  V  L  S  H  K  N  *  T  W  R  R  S  L  V  L  P  *  P  K  L  I  L  C  E  L  S  P  L  L  F  D  R  C  C  I  A  *  S  I  N  I  Y  M  Y  L  I  F  T  L  K  Q  V  F  *  S  K  *  S  Y  I  C  I  L </first_frame>
            <second_frame>  Y  G  L  L  Y  T  C  V  C  V  N  F  S  V  G  *  Y  H  S  K  N  M  *  Q  R  K  Q  K  T  S  T  R  S  I  T  M  A  N  Y  W  K  P  S  V  V  R  C  K  T  S  Y  I  T  S  Q  S  C  K  K  L  W  S  N  Y  E  F  K  V  R  S  N  N  N  N  S  H  F  L  I  N  H  C  K  T  S  P  *  N  S  R  S  S  L  F  I  *  I  C  S  *  C  S  S  S  A  Q  P  L  Q  I  F  C  G  M  A  S  C  L  S  S  M  A  N  A  S  K  N  I  E  H  *  P  L  I  F  Q  *  A  *  C  K  S  T  S  K  V  S  K  G  E  T  I  D  *  L  L  *  Q  M  *  S  T  R  *  S  F  G  Y  R  S  S  C  F  Q  D  *  S  *  F  V  V  K  H  T  F  L  Q  G  F  G  *  S  F  F  R  F  K  G  R  V  E  G  S  Y  M  G  Y  H  G  *  G  R  E  A  *  F  S  R  F  F  P  H  T  *  K  N  *  S  S  R  N  K  T  S  R  Y  H  S  F  W  *  V  V  *  T  F  *  *  F  D  Q  R  T  I  G  G  K  E  K  T  R  I  H  G  K  E  R  C  S  *  N  I  S  Q  Y  Y  *  K  K  S  S  R  D  *  S  *  S  H  Q  V  H  V  H   : G  P  I  W  C  G  Y  *  Y  N  H  K  H  I  G  M  G  N  G  R  I  A  *  T  T  *  D  N  K  K  S  S  S  *  T  C  *  N  H  W  E  R  K  I  N  R  R  S  *  C  F  S  T  P  L  L  A  M  H  Y  Q  R  N  I  K  I  A  S  T  G  S  A  L  S  S  A  Q  S  R  P  R  C  *  I  V  *  L  H  H  P  K  G  L  T   : G  T  S  *  C  V  G  D  W  S  R  F  Y  F  L  E  G  S  F  R  V  *  T  *  E  I  F  E  F  G  S  G  H  A  R  T  R  F  *  V  D  S  I  W  C  W  T  K  N  M  P  W  V  A  T  S  I  E  D  D  S  S  N  V  G  L  T  V  E  F  I  Q  L  E  T  *  C  R  Y  *  A  T  R  I  R  H  G  G  E  V  W  Y  Y  L  S  Q  S  S  S  F  A  S  Y  P  L  S  S  L  I  D  V  A  L  P  S  R  *  I  F  I  C  I  *  Y  L  R  *  S  K  Y  F  N  L  N  N  H  I  Y  V  Y   </second_frame>
            <third_frame>   M  D  Y  Y  T  L  V  F  V  S  I  L  V  L  A  N  I  I  A  K  I  C  S  K  G  S  K  K  L  P  P  G  P  S  P  W  P  I  I  G  N  L  Q  L  L  G  A  K  P  H  I  S  L  A  N  L  A  K  N  Y  G  P  I  M  S  L  K  L  G  Q  I  T  T  I  V  I  S  S  S  T  I  A  K  Q  V  L  K  T  Q  D  Q  A  F  S  S  R  F  A  P  N  A  L  Q  A  H  N  H  Y  K  F  S  V  A  W  L  P  V  C  P  Q  W  R  T  L  R  R  I  L  N  T  N  L  L  S  S  N  K  L  D  A  N  Q  H  L  R  S  Q  K  V  K  Q  L  I  D  Y  C  D  K  C  S  Q  Q  G  E  A  L  D  I  G  Q  V  V  F  K  T  S  L  N  L  L  S  N  T  L  F  S  K  D  L  A  D  P  F  S  D  S  K  V  E  L  K  E  V  I  W  G  I  M  A  E  V  G  K  P  N  L  V  D  F  F  P  I  L  E  K  I  D  L  Q  G  I  R  R  R  A  I  I  H  F  G  K  L  F  K  L  F  D  D  L  I  N  E  R  L  E  E  K  K  R  P  G  F  M  E  K  S  D  V  L  E  I  F  L  N  I  T  E  K  N  P  Q  E  I  D  H  N  H  I  K  S  M  F  M  :  D  L  F  G  A  G  T  D  T  T  T  S  T  L  E  W  A  M  A  E  L  L  K  Q  P  E  I  I  K  K  A  Q  V  E  L  A  E  I  I  G  K  G  K  L  I  E  E  A  D  V  F  R  L  P  Y  L  Q  C  I  I  K  E  T  L  R  L  H  P  P  V  P  L  L  V  P  R  K  V  D  Q  D  V  E  L  C  D  Y  I  I  P  K  G  S  Q  :  V  L  V  N  V  W  A  I  G  R  D  F  T  F  W  K  D  P  L  E  F  K  P  E  R  F  L  N  L  D  L  D  M  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  L  R  M  I  P  V  M  L  G  S  L  L  N  S  F  N  W  K  L  D  A  G  I  E  P  Q  E  L  D  M  E  E  K  F  G  I  T  L  A  K  A  H  P  L  R  A  I  P  S  P  L  *  S  M  L  H  C  L  V  D  K  Y  L  Y  V  F  D  I  Y  A  E  A  S  I  L  I  *  I  I  I  Y  M  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109106" stop="108228"/>
                    <exon start="108117" stop="107836"/>
                    <exon start="107614" stop="107291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1482</number_coding_nucleotides>
                  <number_encoded_amino_acids>494</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDYYTLVFVSILVLANIIAKICSKGSKKLPPGPSPWPIIGNLQLLGAKPHISLANLAKNYGPIMSLKLGQITTIVISSSTIAKQVLKTQDQAFSSRFAPNALQAHNHYKFSVAWLPVCPQWRTLRRILNTNLLSSNKLDANQHLRSQKVKQLIDYCDKCSQQGEALDIGQVVFKTSLNLLSNTLFSKDLADPFSDSKVELKEVIWGIMAEVGKPNLVDFFPILEKIDLQGIRRRAIIHFGKLFKLFDDLINERLEEKKRPGFMEKSDVLEIFLNITEKNPQEIDHNHIKSMFMDLFGAGTDTTTSTLEWAMAELLKQPEIIKKAQVELAEIIGKGKLIEEADVFRLPYLQCIIKETLRLHPPVPLLVPRKVDQDVELCDYIIPKGSQVLVNVWAIGRDFTFWKDPLEFKPERFLNLDLDMRGQDFELIPFGAGRRICPGLPLALRMIPVMLGSLLNSFNWKLDAGIEPQELDMEEKFGITLAKAHPLRAIPSPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="108599" PGL_stop="109047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108599" e_stop="109047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108599" e_stop="109047" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108599" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</gDNA_template>
            <first_frame> D  L  Y  P  K  L  H  L  V  D  Y  I  C  H  N  N  Q  S  I  V  S  P  F  E  T  L  D  V  D  L  H  Q  A  Y  W  K  I  R  G  *  C  S  I  F  F  E  A  F  A  I  E  D  K  Q  E  A  M  P  Q  K  I  C  N  G  C  A  L  E  E  H  *  E  Q  I  *  M  K  R  L  D  L  E  F  *  G  L  V  L  Q  W  L  M  R  K  *  L  L  L  L  F  D  L  T  L  N  S  *  L  D  H  N  F  L  Q  D  W  L  V  I  Y  E  V  L  H  L  T  T  E  G  F  Q  *  L  A  M  V  M  D  L  V  E  V  F  C  F  L  C  Y  I   </first_frame>
            <second_frame>  T  Y  I  Q  S  F  T  L  L  T  T  F  V  T  I  I  N  Q  L  F  H  L  L  R  P  *  M  L  I  C  I  K  L  I  G  R  *  E  V  S  V  Q  Y  S  S  K  R  S  P  L  R  T  N  R  K  P  C  H  R  K  F  V  M  V  V  R  L  K  S  I  R  S  K  S  R  *  K  G  L  I  L  S  F  K  D  L  F  C  N  G  *  *  G  N  D  Y  C  C  Y  L  T  *  L  *  T  H  N  W  T  I  I  F  C  K  I  G  *  *  Y  M  R  F  C  T  *  Q  L  K  V  S  N  N  W  P  W  *  W  T  W  W  K  F  F  A  S  F  A  T  Y  </second_frame>
            <third_frame>   P  I  S  K  A  S  P  C  *  L  H  L  S  Q  *  S  I  N  C  F  T  F  *  D  L  R  C  *  F  A  S  S  L  L  E  D  K  R  L  V  F  N  I  L  R  S  V  R  H  *  G  Q  T  G  S  H  A  T  E  N  L  *  W  L  C  A  *  R  A  L  G  A  N  L  D  E  K  A  *  S  *  V  L  R  T  C  F  A  M  V  D  E  E  M  T  I  V  V  I  *  P  N  F  K  L  I  I  G  P  *  F  F  A  R  L  A  S  D  I  *  G  F  A  P  N  N  *  R  F  P  I  I  G  H  G  D  G  P  G  G  S  F  L  L  P  L  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0109D11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="113400" PGL_stop="113118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113400" e_stop="113118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="113400" e_stop="113118" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113400" stop="113118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</gDNA_template>
            <first_frame> M  C  G  K  L  I  E  I  L  L  F  G  R  I  P  *  C  L  N  L  R  G  F  G  I  Q  I  *  T  C  E  D  K  I  L  N  *  S  H  L  V  R  V  E  E  C  A  L  P  C  H  L  H  C  E  *  F  Q  S  C  W  A  H  S  *  I  P  S  I  G  N  S  R  Q  A  L  D  Q  K  T  *  T  W  R  R  N  L  V  W  L  *  S  K  L  </first_frame>
            <second_frame>  C  V  G  N  *  *  R  F  Y  F  L  G  G  S  L  S  V  *  T  *  E  V  L  A  F  K  F  R  R  A  R  T  R  F  *  T  D  P  I  W  C  G  *  K  N  V  P  C  L  A  T  C  I  A  N  D  S  S  H  V  G  L  T  L  E  F  L  Q  L  E  T  R  G  R  H  *  T  R  R  P  R  H  G  G  E  I  W  F  G  F  S  Q  S  S </second_frame>
            <third_frame>   V  W  E  I  N  R  D  S  T  F  W  E  D  P  L  V  F  K  P  E  R  F  W  H  S  N  L  D  V  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  M  C  P  A  L  P  L  A  L  R  M  I  P  V  M  L  G  S  L  L  N  S  F  N  W  K  L  E  A  G  I  R  P  E  D  L  D  M  E  E  K  F  G  L  A  L  V  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0109D11.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113398" stop="113120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEINRDSTFWEDPLVFKPERFWHSNLDVRGQDFELIPFGAGRRMCPALPLALRMIPVMLGSLLNSFNWKLEAGIRPEDLDMEEKFGLALVKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 201 chains have been computed
$ 
$ memory statistics:
$ 1311472 bytes spliced alignments in total
$ 124 spliced alignments have been stored
$ 10576 bytes was the average size of a spliced alignment
$ 36328 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1513 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 242 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 14:47:31
-->
