<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:31:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332031" ref_strand="+" ref_description="SGN-E332031 [cTOD-16-H24]">
      <seq>caagctaacacaatgcacattatctgggatggttctcataaatggaagggcagaatctatccactcatacaagagaattacaggttttgttgcccaagatgatatagtccacggaaacctcactgtagaagagaaccttcgatttaatgcaagatgcagactagctgcagacttgccaaaggctgataaggttcttgtagtcgagagagttattgaatcattgggtcttcaggcagttagagattcactggttgggactgtagagaagcgtggaatttctggtggccagaggaaacgagtgaacgtggggatggaaatggtcatggaaccttcactgctaatcttggatgaacctacatctggtttagacagctcatcctcaaacttacttcttaaagctcttagacgtgaagctcttgaaggtgtaaacatttgcatggttcttcaccagccaagctataccttgtacaagatgttcgatgacttggtacttctagccaaaggtggtcttgttgcatatcacggccctgtgaagaaagcagaagaatactttgcaaatctgggaatcgcagtaccagatcgtgtaaatcctcctgaccatttcattgacgtccttgagggtatggtcaaaccaggtggaggtgtgaccgtggaacaacttcctgtccgatggatgcttcataatggttaccctgtacccccagatatgatgcaattgtgcgatcagattgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="12321" stop="8868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12021" g_stop="11863" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11862" i_stop="10458" i_length="1405">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.475" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10457" g_stop="10161" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="456" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10160" i_stop="9448" i_length="713">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9447" g_stop="9168" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="736" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E332031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12021" e_stop="11863"/>
          <exon e_start="10457" e_stop="10161"/>
          <exon e_start="9447" e_stop="9168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAGGTATCAGTTAGAATACACACTGCATTATTTTCAAGAAACTGACACTACTGGGAAAATAACATCCAATTTTTCTTCTTTCTAAAGTTCTTTTGTTTGTTGAAATGACATTATTTTGAATTGTTATATCGCCTTCCGTATTTCTTTGAACTTCTAGTTACCAAGTAAGTTTAAAAGATAATTGAAACAATTTTCACGTTTTCCAGAGTTCTGTAAGGATAATTTTTTTTATAAAAAATGGTAGAAGATCTTATCAATTAGTGAAAACTTGTGATGTTTCATTTATTTTTCTTACAATTTATCTTAATTAGGATTTAGTTGCACTTAACTCTTAAGCTATTTGTAAATGTGTATATGTTCTCCAGAAGTGCATAAACTTTGACAACTCTTTTAGTTTTTCACTCATGGTGATTGTGTCCTCTAAGGGTCAATGTCATCTGCATTAGTGCATCTCATCAAGCATTCTACACTTAGCAAGTGTTTATATGGCACTTAATATCTGTAGTTTCTTGTCCTTCAATTTTTTACTATCCGTTGTTTTTTGTACCTCGATTATCGTATTAATTTGTTGTAGTTTCTGCTTTGTTACTTTCTGCTATATTTGCTGTTGTCTGTTATTTCTTGTACTTCTGTTACTTCTTTTCGGGACTGTTTTCCTTGAGCAGAGGGTCTATTGGAACCAACCTCTCTACCGCTGAGGTAGGAGTATGGTCTGCGTACACTCTACGGCTCTACCTAGTGCCAAGTGCCATATCTTTATAATGCTTATAAATTATAAGTGTTCAACTAAGCATATATATTTGCATTTTTTTCTCCCGTTGCGCCTGTTTTCATTAAAGCCCATGTTTTATGCTTTGCGCTAAAAGCCCCCACAGACGTTAGAGCTTTTTTGCACTTTTAGCTCTTGATAACACTGGCTTACCCTCCCCAAACCCCACTTTGTGGGACTACACTGGGTATATGATTGTTGTTTGCCTTGTGTTTTGCAGCAACAACTGGTTTCTTCTCTTTTAAATCTTGTTTTATAAACTGTTATGTAGGGTGTGCTAATCTTAGGTTATACATACTCTATTTGGAATATCCACAAGTTACACGCCCTGAGTTTGTAGTTGAAAATTTGGGCCCTAATGTATAATAAACTTATCTATTCCTAGTTTGACGTGTATAGAAGGTTCAAATCATAAGCTGTTCCTATTGTGGATATGTCACGAAGGCTCTATTAATTATATCGTTCAACATTGTCTTAGTTGAAAATTTTGGCCTTCATGCATTATAGGTTTTGCTCATGCATAAGATGTTGTTCCAAGTTTACATTCATATCAAGTTTGATTAACTTGACATCTAAATGTTCATTCTCATTTTCTTATTGCCATTTTATGTCTTCTGCTGAACCTTCAACATCGTAAAGACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAGGTATGTGGAGTTTTTTCTCCCCTGTCAACTTCTAGAATTCTGCAGAAACTAGATATCCAATTTAGTAGTTTTATTTATCAAAAAAAAGTTTGACTTTTATATACCTTGCTTATGTTACAAATAGTGGATTAAGGGGTATTTGAAGCCTGTTTACAACTATACAGAGACATATATGTTGGAGATAAATAATTTAACTAAAAGTGTGATCTCTCTAGCAACTTAAGCTTTTAGGTTAGTTGGTTACACACTTCGACTTGGTTCGAGTTAGAATTTCGACGTGCTTGGCTCATGAAAAGGATTCAAGTCTGCACGTGAGGATCGTGTTGGAGATATAATTAATCAAAAGGTGTGCTCTCTTTAACAAATTAGGCTTTTAGATAAGATGGTCACACACTTCAACTGTAAAGAAAACAAAATAATCACCACAGAAATGTAATTTCCCTCTACCTAAATAAGTAGTTCTATTAAAACAGGATATTATAAGTTGAGAAATTTAGATAGTTAGAGATGCTTTTGCTTTTGTGTTTTCCCTTTCTTGCTCTATCAGTTTGTGGTTCCAGTTCACAGAAAAAAAATTGAGCTGGCTCAGTAGGTATGCCTTTTGAAATCATGTGACACTGAGACTATGTTGCAATATAAGGCAGAATTTCGTGCTGATATTTGGCTATATTGTATTGTAAGATGGTAGAATGACTTATCTTTCTTTCCTTCAGCTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</genome_strand>
        <mrna_strand>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330243" ref_strand="+" ref_description="SGN-E330243 [cTOD-4-I22]">
      <seq>atctttttgtgtttttgttttttttgtttatatttcctattctattgaaaaatttcatctttttggttcttgggttgtttctatttccattttattgaagaaaaaaaatcatctttttggttctttgtgttgtttcagttttcttgtaaaatatccttcatcccttgaaaaatttccactttttggcttcttggggttgtttctattttttagtttattcagttttatgttttatttagtggtggcattaatcttctttaggaattaatttatttggaatattagatgaaatgggtaaagttaggatatggttacccatttattatttgtttatgattcttgttttgggtttttctccatgtgtttggtgtgcacctcctagtaaacaaactcctcctgctaatgctaatgctaatcctactgctgtgcctgttcttgcatctttcatttatggccaacttgcaaatcttacaaaagtattccataaggatatcacccaggttttgggattttgcattgatgatgtggatgctgagttgtttgaggcatttaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="17767" stop="16531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17467" g_stop="16942" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16941" i_stop="16862" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16861" g_stop="16831" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="557" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E330243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17467" e_stop="16942"/>
          <exon e_start="16861" e_stop="16831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTGTGTTTTTGTTTTTTTTGTTTATATTTCCTATTCTATTGAAAAATTTCATCTTTTTGGTTCTTGGGTTGTTTCTATTTCCATTTTATTGAAGAAAAAAAATCATCTTTTTGGTTCTTTGTGTTGTTTCAGTTTTCTTGTAAAATATCCTTCATCCCTTGAAAAATTTCCACTTTTTGGCTTCTTGGGGTTGTTTCTATTTTTTAGTTTATTCAGTTTTATGTTTTATTTAGTGGTGGCATTAATCTTCTTTAGGAATTAATTTATTTGGAATATTAGATGAAATGGGTAAAGTTAGGATATGGTTACCCATTTATTATTTGTTTATGATTCTTGTTTTGGGTTTTTCTCCATGTGTTTGGTGTGCACCTCCTAGTAAACAAACTCCTCCTGCTAATGCTAATGCTAATCCTACTGCTGTGCCTGTTCTTGCATCTTTCATTTATGGCCAACTTGCAAATCTTACAAAAGTATTCCATAAGGATATCACCCAGGTTTTGGGATTTTGCATTGATGATGTGTAAGTTTTAATTGCATTATAGTTTAACATCTCCTAATTATCTATATTCTAATTAAAAACTTAATCTTTTCATGTTTTAGGGATGCTGAGTTGTTTGAGGCATTTAATTTT</genome_strand>
        <mrna_strand>ATCTTTTTGTGTTTTTGTTTTTTTTGTTTATATTTCCTATTCTATTGAAAAATTTCATCTTTTTGGTTCTTGGGTTGTTTCTATTTCCATTTTATTGAAGAAAAAAAATCATCTTTTTGGTTCTTTGTGTTGTTTCAGTTTTCTTGTAAAATATCCTTCATCCCTTGAAAAATTTCCACTTTTTGGCTTCTTGGGGTTGTTTCTATTTTTTAGTTTATTCAGTTTTATGTTTTATTTAGTGGTGGCATTAATCTTCTTTAGGAATTAATTTATTTGGAATATTAGATGAAATGGGTAAAGTTAGGATATGGTTACCCATTTATTATTTGTTTATGATTCTTGTTTTGGGTTTTTCTCCATGTGTTTGGTGTGCACCTCCTAGTAAACAAACTCCTCCTGCTAATGCTAATGCTAATCCTACTGCTGTGCCTGTTCTTGCATCTTTCATTTATGGCCAACTTGCAAATCTTACAAAAGTATTCCATAAGGATATCACCCAGGTTTTGGGATTTTGCATTGATGATGT................................................................................GGATGCTGAGTTGTTTGAGGCATTTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317642" ref_strand="+" ref_description="SGN-E317642 [cTOB-8-J1]">
      <seq>ccgtgtgaagacttttctcaagtcatctaaagtctttgccatctttgacaagataaaaccttttattggagctgaaagttttatcaagttccaaatagtactgcaatttttgataaaaattatggtgtgggttcagatttagtagcttaaaggaactgtaaaatttgagcttttgactattcaagaactggaaaagattgaatcttgcactttgtagatggtgggttttctacatttctgattgagataaagtttatgctgtgggttcagatttagcagcctaaaggaattgtaaaattgggcttttggctatccaagaactgaaaaagattgaatctcgtgtcccgtagatggtgggttttctacatttctgggagggtattttagtagcatacttaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="18230" stop="20693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18530" g_stop="18681" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18682" i_stop="18805" i_length="124">
            <donor d_prob="0.606" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18806" g_stop="18893" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="240" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18894" i_stop="19215" i_length="322">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19216" g_stop="19261" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="286" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19381" g_stop="19467" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19468" i_stop="20364" i_length="897">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20365" g_stop="20393" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="402" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E317642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18530" e_stop="18681"/>
          <exon e_start="18806" e_stop="18893"/>
          <exon e_start="19216" e_stop="19261"/>
          <exon e_start="19381" e_stop="19467"/>
          <exon e_start="20365" e_stop="20393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGTGAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAGGTGAAGTCTTTTTTAGATTTTGAGTTATTTTTGTGTTTATTGGGAGTTAAAAGTGAAAAGTTGAATGTGGGGTTTTATGGGTCATTGAGTTTTTGAAGGTTGTTTCACACCTTTGTATTTACAGGAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACTTTGTAGATGGTGGGTTTTCTACATTTCTGGTAATCTTTTACCTTGTTTCTGTTTTACTTTATTTATATGGTAACATATACATATGGAAATTTAATGTTGTGGAGAATCTTAGTAGCTGCCTGAACTTTCATGTTATTGATGAGGATGCGATTTCGCCACCTTGTAATCTTCTCCTGTCTTTAAAAAAGAAAAGAGAAGGAAGTTTAAGGTTGTATATTAGCTCTTGTGTTGATAATTAAGTATAGTTTTCAAGCTATTGGGTCAACTTTTGTTGTCCAAATGAAGTACAATGGGTATTGAGAATTCATATAACCAAGCTAATTAGTTTAATATATTTCCATTTATGAACAGATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAGGTGAGTCTTTTTTTAGGTTTTAAGTACTTAACTCTTTTATGTTTCAAAGTAAAATTTTGGATGAGGGATTTTTATGGATCATTGAGTTTTTAAAGTTTTTCTCTTCTCTGTATCCACAGGAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTGGTAATTTTACCTTTTCGGATGTTTCTGTTTTGTTTGGTTTTGATGGCAACAATACATATGGAAATTTAAGGTTGTATTTAGCTTTTATAGTGATGATCTAGTATTGTTTACAAGCTGATGGGTCAACTTTCGTTGTCCATATGTAACATAATGGATCTTGAGAATTCCTATAACCAAGATAATTAGTTTGGGATTGAGTAACGTTTCTGTTTCAAGGGTTTTCTAGCAGTTAGTAGGAAGCCGGGTGTTGTCGCTCTTTATGGGGGAGAGGTAGGGGATAGCCCCCTCGTTTCTTCTTTTCACTATTGATATTTGATAGTATTATTTAGTAATTGCGTAGTTTCATATTTTTCTATGTGTGGTACTATTTGTTGCTTCATTTGTTTTGTGTCTTGCTATTTGGTTTGCTATATTTTTCTTGCACTCCTGCTTGATAACATTCCTTTTGAGCCAAGGGTCTATCGGAAACAACTGCTCTACCCCACAGGTAGGGGCAATCTGCATGCGTCCTATCCTCACCAAGACTCCACTTGTGGGATTACACCGAGTATGTTGTTGTTGTATTTCCTTTGAAAGCCATGGAGCAATTGCCATTAGGTTTGGTAGGAAAGATTTGGTTTATAACTAATGGCTTCTCGTTTTGCATTTCCATGGATTGGTTGGTTAGTCTTCTACCTATTCATCATTTTCATTTGTATATTTCTTCCCCATGCTCTTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGA</genome_strand>
        <mrna_strand>CCGTGTGAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAG............................................................................................................................GAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACTTTGTAGATGGTGGGTTTTCTACATTTCTG..................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAG.......................................................................................................................GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGTATTTTAGTAGCATACTTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346804" ref_strand="+" ref_description="SGN-E346804 [cTOF-32-K14]">
      <seq>gaagacttttctcaagtcatctaaagtctttgccatctttgacaagataaaaccttttattggagctgaaagttttatcaagttccaaatagtactgcaatttttgataaaaattatggtgtgggttcagatttagtagcttaaaggaactgtaaaatttgagcttttgactattcaagaactggaaaagattgaatcttgcacattgtagatgattgagataaagtttatgctgtgggttcagatttagcagcctaaaggaattgtaaaattgggcttttggctatccaagaactgaaaaagattgaatctcgtgtcccgtagatgggagggtattttagtagcatacttaaggacatgaagtgttttccgttctacaatgctgagaagaaggaagaacctaaaaccacgaagtcaaatccagttctgtcctcctcttttggtctttttgatagtgaatttcggcattctcatcgtgagtccagctctcagaatgtatcagataccagctcagagtctagaggaaggagccaaattccaagcctatcagatagaccttctgatctcagggcatttacattctcagaactgaaagcagcaacaaagaatttcaaccgtactactaagattggggaaggtggatttggatgtgtatataaggccacagtaaagactggtgaggactcatcgaaaaagattgacgtggctataaaacaacttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="18236" stop="21061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18536" g_stop="18681" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18682" i_stop="18805" i_length="124">
            <donor d_prob="0.606" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18806" g_stop="18873" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="214" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18874" i_stop="19215" i_length="342">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19216" g_stop="19261" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="260" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19381" g_stop="19447" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="327" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19448" i_stop="20364" i_length="917">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20365" g_stop="20761" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="724" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E346804" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18536" e_stop="18681"/>
          <exon e_start="18806" e_stop="18873"/>
          <exon e_start="19216" e_stop="19261"/>
          <exon e_start="19381" e_stop="19447"/>
          <exon e_start="20365" e_stop="20761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAGGTGAAGTCTTTTTTAGATTTTGAGTTATTTTTGTGTTTATTGGGAGTTAAAAGTGAAAAGTTGAATGTGGGGTTTTATGGGTCATTGAGTTTTTGAAGGTTGTTTCACACCTTTGTATTTACAGGAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACTTTGTAGATGGTGGGTTTTCTACATTTCTGGTAATCTTTTACCTTGTTTCTGTTTTACTTTATTTATATGGTAACATATACATATGGAAATTTAATGTTGTGGAGAATCTTAGTAGCTGCCTGAACTTTCATGTTATTGATGAGGATGCGATTTCGCCACCTTGTAATCTTCTCCTGTCTTTAAAAAAGAAAAGAGAAGGAAGTTTAAGGTTGTATATTAGCTCTTGTGTTGATAATTAAGTATAGTTTTCAAGCTATTGGGTCAACTTTTGTTGTCCAAATGAAGTACAATGGGTATTGAGAATTCATATAACCAAGCTAATTAGTTTAATATATTTCCATTTATGAACAGATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAGGTGAGTCTTTTTTTAGGTTTTAAGTACTTAACTCTTTTATGTTTCAAAGTAAAATTTTGGATGAGGGATTTTTATGGATCATTGAGTTTTTAAAGTTTTTCTCTTCTCTGTATCCACAGGAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTGGTAATTTTACCTTTTCGGATGTTTCTGTTTTGTTTGGTTTTGATGGCAACAATACATATGGAAATTTAAGGTTGTATTTAGCTTTTATAGTGATGATCTAGTATTGTTTACAAGCTGATGGGTCAACTTTCGTTGTCCATATGTAACATAATGGATCTTGAGAATTCCTATAACCAAGATAATTAGTTTGGGATTGAGTAACGTTTCTGTTTCAAGGGTTTTCTAGCAGTTAGTAGGAAGCCGGGTGTTGTCGCTCTTTATGGGGGAGAGGTAGGGGATAGCCCCCTCGTTTCTTCTTTTCACTATTGATATTTGATAGTATTATTTAGTAATTGCGTAGTTTCATATTTTTCTATGTGTGGTACTATTTGTTGCTTCATTTGTTTTGTGTCTTGCTATTTGGTTTGCTATATTTTTCTTGCACTCCTGCTTGATAACATTCCTTTTGAGCCAAGGGTCTATCGGAAACAACTGCTCTACCCCACAGGTAGGGGCAATCTGCATGCGTCCTATCCTCACCAAGACTCCACTTGTGGGATTACACCGAGTATGTTGTTGTTGTATTTCCTTTGAAAGCCATGGAGCAATTGCCATTAGGTTTGGTAGGAAAGATTTGGTTTATAACTAATGGCTTCTCGTTTTGCATTTCCATGGATTGGTTGGTTAGTCTTCTACCTATTCATCATTTTCATTTGTATATTTCTTCCCCATGCTCTTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTA</genome_strand>
        <mrna_strand>GAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAG............................................................................................................................GAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACATTGTAGATG......................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAG.......................................................................................................................GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397100" ref_strand="+" ref_description="SGN-E397100 [TUS-44-L12]">
      <seq>ttatgctgtgggttcagatttagcagcctaaaggaattgtaaaattgggcttttggctatccaagaactgaaaaagattgaatctcgtgtcccgtagatgggagggtattttagtagcatacttaaggacatgaagtgttttccgttctactgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="18929" stop="20721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19229" g_stop="19261" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19381" g_stop="19447" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="100" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19448" i_stop="20364" i_length="917">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20365" g_stop="20421" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="157" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E397100" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19229" e_stop="19261"/>
          <exon e_start="19381" e_stop="19447"/>
          <exon e_start="20365" e_stop="20421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTGTGGGTTCAGATTTAGCAGCCTAAAGGTGAGTCTTTTTTTAGGTTTTAAGTACTTAACTCTTTTATGTTTCAAAGTAAAATTTTGGATGAGGGATTTTTATGGATCATTGAGTTTTTAAAGTTTTTCTCTTCTCTGTATCCACAGGAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTGGTAATTTTACCTTTTCGGATGTTTCTGTTTTGTTTGGTTTTGATGGCAACAATACATATGGAAATTTAAGGTTGTATTTAGCTTTTATAGTGATGATCTAGTATTGTTTACAAGCTGATGGGTCAACTTTCGTTGTCCATATGTAACATAATGGATCTTGAGAATTCCTATAACCAAGATAATTAGTTTGGGATTGAGTAACGTTTCTGTTTCAAGGGTTTTCTAGCAGTTAGTAGGAAGCCGGGTGTTGTCGCTCTTTATGGGGGAGAGGTAGGGGATAGCCCCCTCGTTTCTTCTTTTCACTATTGATATTTGATAGTATTATTTAGTAATTGCGTAGTTTCATATTTTTCTATGTGTGGTACTATTTGTTGCTTCATTTGTTTTGTGTCTTGCTATTTGGTTTGCTATATTTTTCTTGCACTCCTGCTTGATAACATTCCTTTTGAGCCAAGGGTCTATCGGAAACAACTGCTCTACCCCACAGGTAGGGGCAATCTGCATGCGTCCTATCCTCACCAAGACTCCACTTGTGGGATTACACCGAGTATGTTGTTGTTGTATTTCCTTTGAAAGCCATGGAGCAATTGCCATTAGGTTTGGTAGGAAAGATTTGGTTTATAACTAATGGCTTCTCGTTTTGCATTTCCATGGATTGGTTGGTTAGTCTTCTACCTATTCATCATTTTCATTTGTATATTTCTTCCCCATGCTCTTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCT</genome_strand>
        <mrna_strand>TTATGCTGTGGGTTCAGATTTAGCAGCCTAAAG.......................................................................................................................GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288381" ref_strand="+" ref_description="SGN-E288381 [cLES-16-M21]">
      <seq>tatgctgtgggttcagatttagcagcctaaaggaattgtaaaattgggcttttggctatccaagaactgaaaaagattgaatctcgtgtcccgtagatgggagggtattttagtagcatacttaaggacatgaagtgttttccgttctacaatgctgagaagaaggaagaacctaaaaccacgaagtcaaatccagttctgtcctcctcttttggtctttttgatagtgaatttcggcattctcatcgtgagtccagctctcagaatgtatcagataccagctcagagtctagaggaaggagccaaattccaagcctatcagatagaccttctgatctcagggcatttacattctcagaactgaaagcagcaacaaagaatttcaaccgtactactaagattggggaaggtggatttggatgtgtatataaggccacagtaaagactggtgaggactcatcgaaaaagattgacgtggctataaaacaacttggtaggagaggattacagggacacaaagagtgggtgacagaagtcaatgttctcggtgttgctgaacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="18930" stop="23433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19230" g_stop="19261" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19381" g_stop="19447" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="99" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19448" i_stop="20364" i_length="917">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20365" g_stop="20775" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="510" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20776" i_stop="23079" i_length="2304">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23080" g_stop="23133" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="564" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E288381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19230" e_stop="19261"/>
          <exon e_start="19381" e_stop="19447"/>
          <exon e_start="20365" e_stop="20775"/>
          <exon e_start="23080" e_stop="23133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTGTGGGTTCAGATTTAGCAGCCTAAAGGTGAGTCTTTTTTTAGGTTTTAAGTACTTAACTCTTTTATGTTTCAAAGTAAAATTTTGGATGAGGGATTTTTATGGATCATTGAGTTTTTAAAGTTTTTCTCTTCTCTGTATCCACAGGAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTGGTAATTTTACCTTTTCGGATGTTTCTGTTTTGTTTGGTTTTGATGGCAACAATACATATGGAAATTTAAGGTTGTATTTAGCTTTTATAGTGATGATCTAGTATTGTTTACAAGCTGATGGGTCAACTTTCGTTGTCCATATGTAACATAATGGATCTTGAGAATTCCTATAACCAAGATAATTAGTTTGGGATTGAGTAACGTTTCTGTTTCAAGGGTTTTCTAGCAGTTAGTAGGAAGCCGGGTGTTGTCGCTCTTTATGGGGGAGAGGTAGGGGATAGCCCCCTCGTTTCTTCTTTTCACTATTGATATTTGATAGTATTATTTAGTAATTGCGTAGTTTCATATTTTTCTATGTGTGGTACTATTTGTTGCTTCATTTGTTTTGTGTCTTGCTATTTGGTTTGCTATATTTTTCTTGCACTCCTGCTTGATAACATTCCTTTTGAGCCAAGGGTCTATCGGAAACAACTGCTCTACCCCACAGGTAGGGGCAATCTGCATGCGTCCTATCCTCACCAAGACTCCACTTGTGGGATTACACCGAGTATGTTGTTGTTGTATTTCCTTTGAAAGCCATGGAGCAATTGCCATTAGGTTTGGTAGGAAAGATTTGGTTTATAACTAATGGCTTCTCGTTTTGCATTTCCATGGATTGGTTGGTTAGTCTTCTACCTATTCATCATTTTCATTTGTATATTTCTTCCCCATGCTCTTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAGGTAGCTAATTTCTTTTTAAGCTCGAATAATTATGTATTACAAATATTAGGATCCTGCACTTTGACATCACTATTTATTAGGTGTTGGCACTTTGCAGTTGATACACACTTCAATCATCTCTTATCTTTTTAGCTGCATGGAACTAAATCTTAATGTTACTTCAACTGCTGTCATTTCTCTTACCATTTAAGTTTCACTTGTGGAGCTGTATTAGAAACTTTTGGGAATCTTTTGGGAGTACAGAAAACCAGGAAGAATGAAGCAAACTGTTCCATAGTATGAACTATGAAATTGCTAGGGAAATATTTTAACTTTATAACGGATGGCATTTACCTTATCAAAAAAATATTTCAACTTAAACTTTTTGTACATTGATAGACACATTCAACAACATATATACTAACTAATTTGAATTGGCTTGGCGTTATTCAAAATGTGTGATCTGACTGTGCACATGGAAGTTCATGGATTTGAATGATCTCTTATGTTAAAATACTTCCTTTTTGTTACCTTTCCTCTGTTCTTTTGTGGTGTAGTGATGTACTCATGGCTTTCCCCCATCTAACCGATTAAAAGGATGACCATAGATTGAAAAATCTTATAGATGGCAAAGTCTACTCCTTTGAACTTAGAAAAGTGATGAACCCCAGAACTTATTTCCATTTTAGAAAGAAGTGCTGAACCCCGGAAGTATAGTTGGTATAGTTCTTCCAATATGTAATGGCTCCATTCAATGCAGTTCTTTCAGAAGCACTAACCGCTTACTCTGGCCTAGTGAGAAAATCTTCTAATGGTTGAGGACCACCTGATAAATAGTTGTTTAGCTTGCCACATTGAAACATTCTTCTCAGTGATTGGTGCTGGTATTTGTTTTAGATTGTTTACTAGTCCGAAGAGAACATTTTCCACAGTGGGGGTTTGTCCAATATGACCTTTTAGATCTAAAAATGAGAATTGGAGTACGAAAATGATTAAATTTACCCAACTTCATAGATGGATAAGCATGATGAAGTTCAATCATAATTATCTCCAATAGCTTTTTGATTGAGATGCCTAATGTCTACGCACTTTCTTATGCTTGGGTTCATCTTATATGCGGCTGAAGCGCCATGATGCTGAACTTCCATTTTTCTTATTCCAGTATCAACATGTTATTCTTCATTGGAGTTTTATTGAAACCCCATACTTATCTGTTACATAACTTCAGAAGAGCGAATGGTGCAGAGAATTCATAAATCTGAACAGACTAGTTTGGGATTGAGTTGTAGTGAGTGTTATTATTTATTGAAGATGACCCCTGTTTTAATCATGGATTGAAGTTCTAATTTATCTTCAAGTATAATAATACTTCCTCTATTCCCTGTTGTTGACCTAGTTACTATTTGGTGAGTCAATAAAATGCTTTCATGATTGCTATTTTATTACTCCCTCCGTTTCAATTTGTTTGTTTGGTTTTGACTTGACTCCGAGTTCAAGAAAGTAAGGAAGACTTTTGAATCTTGTAGTCTTAAATAGGTCATATGGAAGGTTATAAATTATAGAGTTACCAAAAAATGAAAGAGACTTTGAAATGGAGTAAATAGGGAAGTAAGACAAACAAACTGAAACAGAGGGAGAAATTTTTCTTCTTCTTATTTTTTAGCTTAAATATTAGATGAAGTAGATGCTTTTCATCTTGTTTCTAAGTATATCATTTTTATTGAGGAAGAAGCTGCTATTCAGCATCCAAAACTACACCAAAAATGTAATATTGTCAACTCTGATAAACTTAATAGGTCATACGATTGTGGAAAGAGGTCGTAAATATTGAATCTTCTGCTCTGTATATAATTGATTAATTGTACATTGTCAACTCATGAATAAGGTACCTGGAAAGCTGCTTTCACGTCAGCTTTTGACGTTCTACGATGTCCTTACTTTGGTCACTAGGACCAAGCGTTGATGGTAATGGTGAAGCTTCTGCATAATAATTGGTACTGGGACTGCCACTCATATAGCAATTTTTGACATTCTACTATTTCTTTACTTTAATCACTAGGAGAACACCTTGATGGTTATAGTGAACCTTCTGCAGAATTATTAACTTATTTCACATGTTTATTGCGAGATTTGCGACTTACCCACCAGTTTTCAGGTTTTTACTTACTGTTTAGTTAATTGTTTGTCGTAACTTTGGTGAAAACGATTAAGAACCAGTCTGTTTACAATAGTTCTGTGGAATGAACCATGATTATAAATAAAACACGATAATCATGTCCTTGTTCCAACTTGTAGTAATGTACTCTTCTTGATTCTATTCAATAGGGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAA</genome_strand>
        <mrna_strand>TATGCTGTGGGTTCAGATTTAGCAGCCTAAAG.......................................................................................................................GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213866" ref_strand="+" ref_description="SGN-E213866 [cLEC-76-B8]">
      <seq>ttatttttactttaacaaggcatgtgaactttcctgctccttaaagtcttggataaattttgcaggcatcagtgtgattagatattcaaatacgatatacttcagtacattcctagtattaccgatttacctttatgtgaaattacttgaatattaattgaccattctggttgaacctgcagggagggtattttagtagcatacttaaggacatgaagtgttttccgttctacaatgctgagaagaaggaagaacctaaaaccacgaagtcaaatccagttctgtcctcctcttttggtctttttgatagtgaatttcggcattctcatcgtgagtccagctctcagaatgtatcagataccagctcagagtctagaggaaggagccaaattccaagcctatcagatagaccttctgatctcaaggcatttacattctcagaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="19883" stop="20930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20183" g_stop="20630" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E213866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20183" e_stop="20630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAA</genome_strand>
        <mrna_strand>TTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAAGGCATTTACATTCTCAGAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247074" ref_strand="+" ref_description="SGN-E247074 [cLEF-41-P5]">
      <seq>tctgtcctccacttttggtcttatagatagtgaatttcggcattctcatcgtgagtccagctctcagaatgtatcagataccagctcagagtctagaggaaggagccaaattccaagcctatcagatagaccttctgatctcagggcatttacattctcagaactgaaagcagcaacaaagaatttcaaccgtactactaagattggggaaggtggatttggatgtgtatataaggccacagtaaagactggtgaggactcatcgaaaaagattgacgtggctataaaacaacttggtaggagaggattacagggacacaaagagtgggtgacagaagtcaatgttctcggtgttgctgaacataaaaacctcgtcaaattagttggctactgtgcagaagatgacgagagaagaattcagcggcttttggtgtatgaatacatgcctaacagaagtgtcgaaaaccatttgtcagctaggtcagaaacccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="20163" stop="23560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20463" g_stop="20775" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20776" i_stop="23079" i_length="2304">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23080" g_stop="23260" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="494" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E247074" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20463" e_stop="20775"/>
          <exon e_start="23080" e_stop="23260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAGGTAGCTAATTTCTTTTTAAGCTCGAATAATTATGTATTACAAATATTAGGATCCTGCACTTTGACATCACTATTTATTAGGTGTTGGCACTTTGCAGTTGATACACACTTCAATCATCTCTTATCTTTTTAGCTGCATGGAACTAAATCTTAATGTTACTTCAACTGCTGTCATTTCTCTTACCATTTAAGTTTCACTTGTGGAGCTGTATTAGAAACTTTTGGGAATCTTTTGGGAGTACAGAAAACCAGGAAGAATGAAGCAAACTGTTCCATAGTATGAACTATGAAATTGCTAGGGAAATATTTTAACTTTATAACGGATGGCATTTACCTTATCAAAAAAATATTTCAACTTAAACTTTTTGTACATTGATAGACACATTCAACAACATATATACTAACTAATTTGAATTGGCTTGGCGTTATTCAAAATGTGTGATCTGACTGTGCACATGGAAGTTCATGGATTTGAATGATCTCTTATGTTAAAATACTTCCTTTTTGTTACCTTTCCTCTGTTCTTTTGTGGTGTAGTGATGTACTCATGGCTTTCCCCCATCTAACCGATTAAAAGGATGACCATAGATTGAAAAATCTTATAGATGGCAAAGTCTACTCCTTTGAACTTAGAAAAGTGATGAACCCCAGAACTTATTTCCATTTTAGAAAGAAGTGCTGAACCCCGGAAGTATAGTTGGTATAGTTCTTCCAATATGTAATGGCTCCATTCAATGCAGTTCTTTCAGAAGCACTAACCGCTTACTCTGGCCTAGTGAGAAAATCTTCTAATGGTTGAGGACCACCTGATAAATAGTTGTTTAGCTTGCCACATTGAAACATTCTTCTCAGTGATTGGTGCTGGTATTTGTTTTAGATTGTTTACTAGTCCGAAGAGAACATTTTCCACAGTGGGGGTTTGTCCAATATGACCTTTTAGATCTAAAAATGAGAATTGGAGTACGAAAATGATTAAATTTACCCAACTTCATAGATGGATAAGCATGATGAAGTTCAATCATAATTATCTCCAATAGCTTTTTGATTGAGATGCCTAATGTCTACGCACTTTCTTATGCTTGGGTTCATCTTATATGCGGCTGAAGCGCCATGATGCTGAACTTCCATTTTTCTTATTCCAGTATCAACATGTTATTCTTCATTGGAGTTTTATTGAAACCCCATACTTATCTGTTACATAACTTCAGAAGAGCGAATGGTGCAGAGAATTCATAAATCTGAACAGACTAGTTTGGGATTGAGTTGTAGTGAGTGTTATTATTTATTGAAGATGACCCCTGTTTTAATCATGGATTGAAGTTCTAATTTATCTTCAAGTATAATAATACTTCCTCTATTCCCTGTTGTTGACCTAGTTACTATTTGGTGAGTCAATAAAATGCTTTCATGATTGCTATTTTATTACTCCCTCCGTTTCAATTTGTTTGTTTGGTTTTGACTTGACTCCGAGTTCAAGAAAGTAAGGAAGACTTTTGAATCTTGTAGTCTTAAATAGGTCATATGGAAGGTTATAAATTATAGAGTTACCAAAAAATGAAAGAGACTTTGAAATGGAGTAAATAGGGAAGTAAGACAAACAAACTGAAACAGAGGGAGAAATTTTTCTTCTTCTTATTTTTTAGCTTAAATATTAGATGAAGTAGATGCTTTTCATCTTGTTTCTAAGTATATCATTTTTATTGAGGAAGAAGCTGCTATTCAGCATCCAAAACTACACCAAAAATGTAATATTGTCAACTCTGATAAACTTAATAGGTCATACGATTGTGGAAAGAGGTCGTAAATATTGAATCTTCTGCTCTGTATATAATTGATTAATTGTACATTGTCAACTCATGAATAAGGTACCTGGAAAGCTGCTTTCACGTCAGCTTTTGACGTTCTACGATGTCCTTACTTTGGTCACTAGGACCAAGCGTTGATGGTAATGGTGAAGCTTCTGCATAATAATTGGTACTGGGACTGCCACTCATATAGCAATTTTTGACATTCTACTATTTCTTTACTTTAATCACTAGGAGAACACCTTGATGGTTATAGTGAACCTTCTGCAGAATTATTAACTTATTTCACATGTTTATTGCGAGATTTGCGACTTACCCACCAGTTTTCAGGTTTTTACTTACTGTTTAGTTAATTGTTTGTCGTAACTTTGGTGAAAACGATTAAGAACCAGTCTGTTTACAATAGTTCTGTGGAATGAACCATGATTATAAATAAAACACGATAATCATGTCCTTGTTCCAACTTGTAGTAATGTACTCTTCTTGATTCTATTCAATAGGGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAAAACCTCGTCAAATTAGTTGGCTACTGTGCAGAAGATGACGAGAGAGGAATTCAGCGGCTTTTGGTGTATGAATACATGCCTAACAGAAGTGTCGAAAACCATTTGTCAGCTAGGTCAGAAACCCCTC</genome_strand>
        <mrna_strand>TCTGTCCTCCACTTTTGGTCTTATAGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAAAACCTCGTCAAATTAGTTGGCTACTGTGCAGAAGATGACGAGAGAAGAATTCAGCGGCTTTTGGTGTATGAATACATGCCTAACAGAAGTGTCGAAAACCATTTGTCAGCTAGGTCAGAAACCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324519" ref_strand="+" ref_description="SGN-E324519 [cTOC-9-A6]">
      <seq>gaagctcttatagtgggtaaagccatacatatcanattctgggaagtttcaggggagaatatacccaaggcttgatggtaagatctcaaggtcagctcanaagctctctatagtcgccaaccgctgcttagtcagacatgcaaagacacgtccaaaaatgagcgaagtcctggaaatggtgaacaaagttgtcgagacatcaacaggaataggaaaccctggaccacctgtgagaatcgcggaaccaacttcaccagaatctacaaggaaaggtaagaggaaggtagacaccaaactcggagatggtagccggttagtacgtatatggtcaacaaagcttacaaacacttgttaatacaatagtttccaatatgcacaaagagaaaacagagttgaaaaggtaatgaagaagcacagattatataactagttcccaatatgaatgagggcttctccattattggcttatatctatatataatataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="23606" stop="24692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23906" g_stop="24392" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E324519" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23906" e_stop="24392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCTTAGAGTGGGTAAAGCCATACATATCAGATTCTAAGAAGTTTCAGCAGATAATAGACCCAAGGCTTGATGGTAAGATCTCAAGGTCAGCTCAGAAGCTCTCTATAGTCGCCAACCGCTGCTTAGTCAGACATGCAAAGACACGTCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGA</genome_strand>
        <mrna_strand>GAAGCTCTTATAGTGGGTAAAGCCATACATATCANATTCTGGGAAGTTTCAGGGGAGAATATACCCAAGGCTTGATGGTAAGATCTCAAGGTCAGCTCANAAGCTCTCTATAGTCGCCAACCGCTGCTTAGTCAGACATGCAAAGACACGTCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGGCTTCTCCATTATTGGCTTATATCTATATATAATATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259742" ref_strand="+" ref_description="SGN-E259742 [cLEG-42-D16]">
      <seq>taagatctcaaggtcagctcagaagctctctatagtcgccaaccgctgcttagtcagacatgcaaagacacgtccaaaaatgagcgaagtcctggaaatggtgaacaaagttgtcgagacatcaacaggaataggaaaccctggaccacctgtgagaatcgcggaaccaacttcaccagaatctacaaggaaaggtaagaggaaggtagacaccaaactcggagatggtagccggttagtacgtatatggtcaacaaagcttacaaacacttgttaatacaatagtttccaatatgcacaaagagaaaacagagttgaaaaggtaatgaagaagcacagattatataactagttcccaatatgaatgaggtcttctccattattgtcttatatttatatataatatagatgtttaaatttatagagaaaatcgtaatcattcaaatgtacattcaaatttagacgtgtttaacaaatgaggcataagtgttgctatttgtatganaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="23684" stop="24787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23984" g_stop="24488" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="517"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E259742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23984" e_stop="24488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATCTCAAGGTCAGCTCAGAAGCTCTCTATAGTCGCCAACCGCTGCTTAGTCAGACATGCAAAGACACGTCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGATGTTTAAATTTATAGAGAAAATCGTAATCATTCAAATGTACATTCAAATTTAGACGTGTTTAACAAATGAGGCATAAGTGTTGCTATTTGTATGAA</genome_strand>
        <mrna_strand>TAAGATCTCAAGGTCAGCTCAGAAGCTCTCTATAGTCGCCAACCGCTGCTTAGTCAGACATGCAAAGACACGTCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGATGTTTAAATTTATAGAGAAAATCGTAATCATTCAAATGTACATTCAAATTTAGACGTGTTTAACAAATGAGGCATAAGTGTTGCTATTTGTATGAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226535" ref_strand="+" ref_description="SGN-E226535 [cLEL-26-H20](-)">
      <seq>tccaaaaatgagcgaagtcctggaaatggtgaacaaagttgtcgagacatcaacaggaataggaaaccctggaccacctgtgagaatcgcggaaccaacgtcaccagaatctacaaggaaaggtaagaggaaggtagaccccaaactcggtgatggtagccggttagtacgtatatggtcaacaaagcttacaaacacttgttaatacaatagtttccaatatgcacaaaaagaaaacagagttgaaaaggtaatgaagaagcacagattatataactagttccccatatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="23756" stop="24648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24056" g_stop="24352" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="309"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E226535" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24056" e_stop="24352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAG</genome_strand>
        <mrna_strand>TCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACGTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACCCCAAACTCGGTGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAAAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCCATATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226704" ref_strand="+" ref_description="SGN-E226704 [cLEL-26-H10](-)">
      <seq>aacatcaacaggaataggaaaccctggaccacctgtgagaatcgcggaaccaacttcaccagaatctacaaggaaaggtaagaggaaggtagacaccaaactcggagatggtagccggttagtacgtatatggtcaacaaagcttacaaacacttgttaatacaatagtttccaatatgcacaaagagaaaacagagttgaaaaggtaatgaagaagcacagattatataactagttcccaatatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="23802" stop="24648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24101" g_stop="24352" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="253" polyA_stop="264"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E226704" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24101" e_stop="24352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAG</genome_strand>
        <mrna_strand>AACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398674" ref_strand="+" ref_description="SGN-E398674 [TUS-44-L12](-)">
      <seq>caaggaaaggtaagaggaaggtagacaccaaactcggagatggtagccggttagtacgtatatggtcaacaaagcttacaaacacttgttaatacaatagtttccaatatgcacaaagagaaaacagagttgaaaaggtaatgaagaagcacagattatataactagttcccaatatgaatgaggtcttctccattattgtcttatatttatatataatatagatgtttaaatttatagagaaaatcgtaatcattcaaatgtacattcaaatttagacgtgtttaagaaatgaggcataagtgttgctatttgtatgaagttaagcagtattgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="23869" stop="24804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24169" g_stop="24501" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="346"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E398674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24169" e_stop="24501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGATGTTTAAATTTATAGAGAAAATCGTAATCATTCAAATGTACATTCAAATTTAGACGTGTTTAACAAATGAGGCATAAGTGTTGCTATTTGTATGAAGTTAAGCATTATT</genome_strand>
        <mrna_strand>CAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGATGTTTAAATTTATAGAGAAAATCGTAATCATTCAAATGTACATTCAAATTTAGACGTGTTTAAGAAATGAGGCATAAGTGTTGCTATTTGTATGAAGTTAAGCAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541834" ref_strand="+" ref_description="SGN-E541834 [TUS-62-N7]">
      <seq>aatccttaaaaaaaatataaaaaataaataaatactttcatacacaaattcctctataaattaaaatctcttttttacgtttcaaaccaaaaaaaaactttgtaaattcgcttttttttttcttactctatatataaatttcatttttctctccataaaaaataattatcatctttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30324" stop="33249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30624" g_stop="30869" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32757" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="639" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32830" g_stop="32949" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="759" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E541834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30624" e_stop="30869"/>
          <exon e_start="32365" e_stop="32757"/>
          <exon e_start="32830" e_stop="32949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTG</genome_strand>
        <mrna_strand>AATCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297085" ref_strand="+" ref_description="SGN-E297085 [cLEW-2-I6]">
      <seq>atccttaaaaaaaatataaaaaataaataaatactttcatacacaaattcctctataaattaaaatctcttttttacgtttcaaaccaaaaaaaaactttgtaaattcgcttttttttttcttactctatatataaatttcatttttctctccataaaaaataattatcatctttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30325" stop="32971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30625" g_stop="30869" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32671" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="552" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E297085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30625" e_stop="30869"/>
          <exon e_start="32365" e_stop="32671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGC</genome_strand>
        <mrna_strand>ATCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338665" ref_strand="+" ref_description="SGN-E338665 [cTOE-15-D16]">
      <seq>tccttaaaaaaaatataaaaaataaataaatactttcatacacaaattcctctataaattaaaatctcttttttacgtttcaaaccaaaaaaaaactttgtaaattcgcttttttttttcttactctatatataaatttcatttttctctccataaaaaataattatcatctttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtaccaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30326" stop="32933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30626" g_stop="30869" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32633" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="514" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E338665" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30626" e_stop="30869"/>
          <exon e_start="32365" e_stop="32633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTA-CAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTA</genome_strand>
        <mrna_strand>TCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359229" ref_strand="+" ref_description="SGN-E359229 [cLHT-11-F10]">
      <seq>tttcatacacaaattcctctataaattaaaatctcttttttacgtttcaaactaaaaaaaaaactttgtaaattccctttttttttcttactctatatataaatttcattttttctctccataaaaaaataattatcatctttatcactgctcattttcttcttatacaacacaaatttttaacttttttttgtatagcatatgaacagagttgaagtggaattgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtataatgtcgtgtgagccggaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgaccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30359" stop="32997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30659" g_stop="30811" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30812" i_stop="30987" i_length="176">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.845" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30988" g_stop="30997" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="165" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30998" i_stop="31318" i_length="321">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.915" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31319" g_stop="31363" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="0.511"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31364" i_stop="31897" i_length="534">
            <donor d_prob="0.000" d_score="0.51"/>
            <acceptor a_prob="0.582" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31898" g_stop="31921" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="233" r_length="23" r_score="0.625"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31922" i_stop="32364" i_length="443">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32365" g_stop="32697" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="566" r_length="333" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E359229" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30659" e_stop="30811"/>
          <exon e_start="30988" e_stop="30997"/>
          <exon e_start="31319" e_stop="31363"/>
          <exon e_start="31898" e_stop="31921"/>
          <exon e_start="32365" e_stop="32697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAAC-CAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCA-TTTTTCTCTCCAT-AAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGT</genome_strand>
        <mrna_strand>TTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACTAAAAAAAAAACTTTGTAAATTCCCTTTTTT-TTTCTTACTCTATATATAAATTTCATTTTTTCTCTCCATAAAAAAATAATTATCATCTTTATCACTGCTCAT................................................................................................................................................................................TTTCTTCTTA.................................................................................................................................................................................................................................................................................................................................TACAACACAAATTTTTAACTTTTTTTTGTATAGCATATGAACAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGTGGAATTGAAT-TAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTATAATGTCGTGTGAGCCGGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGACCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577875" ref_strand="+" ref_description="SGN-E577875 [LE08AG09]">
      <seq>cttttttttttcttactctatatataaatttcatttttctctccataaaaaataattatcatctttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttgagattgatggagaagtagggaagagaataaaccagctgagtgctattcctcatgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30434" stop="33299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30734" g_stop="30869" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32757" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="529" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32830" g_stop="32999" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="699" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E577875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30734" e_stop="30869"/>
          <exon e_start="32365" e_stop="32757"/>
          <exon e_start="32830" e_stop="32999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT</genome_strand>
        <mrna_strand>CTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710137" ref_strand="+" ref_description="SGN-E710137 [FA54BE01]">
      <seq>cgataaatttcatttttctctccataaaaaataattatcatctttatcactgcttatacaacacaaatttataattttttttttatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaaaacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccaaaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttgagattgatggagaagtagggaagagaataaaccagctgagtgctattcctcatgttcctagaataaacggagacataccttcagttgatgaagcaacatctgaccaccaaaggctgctagatagattgcaattatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30457" stop="33907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30755" g_stop="30869" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="0.96"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32757" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="506" r_length="393" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32830" g_stop="32999" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="676" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33517" g_stop="33590" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="750" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E710137" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30755" e_stop="30869"/>
          <exon e_start="32365" e_stop="32757"/>
          <exon e_start="32830" e_stop="32999"/>
          <exon e_start="33517" e_stop="33590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCTGTAAGTGCTGTCTGTTAGTAAATTGTAGGAGCTTTGATGAGCTTGAAATTCCCCTCTTCTTTGGGACTTTCATTGTAACTTTCTGAGTGGCTGCTTTGTGCGAGTAACTAGACAACTAATTCACTGTGTATGAGGACTTGTATGGTGCTCTGTACCTGTGACCATTTACTTGGCACTGGTTACATATATGTTTAGCTTTGTTGAATAATATCATCAGATCATTACCTTCTTAAATCAGCAGCCAACCAGCTACCCAAATATTTCTATTCATCTGGATACCGACTGTATTATATTAAAGGATATGATAAACCATATTTGTTTTTCAAGAACAAATACTTGATAAAAGATAGAGACTGTTAGATGAAATTGTCTTTACAGTCATATACATACTTGGTATGTTGTGAATGTACTGAAATAGGAAGCCTTTTGCTTTGACCATGTAGACTTTTTTGTGTGGATATACCTTCTTGAATGTTTCTTTAGTTTCTTATAATAATTTGTATTATTAACCGTGCAGCATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG</genome_strand>
        <mrna_strand>CGATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTT-TTTTTT-TATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAAACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAAAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391770" ref_strand="+" ref_description="SGN-E391770 [TUS-24-K24]">
      <seq>ctttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttgagattgatggagaagtagggaagagaataaaccagctgagtgctattcctcatgttcctagaataaacggagacatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30496" stop="33846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30796" g_stop="30869" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32757" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="467" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32830" g_stop="32999" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="637" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33517" g_stop="33546" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="667" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E391770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30796" e_stop="30869"/>
          <exon e_start="32365" e_stop="32757"/>
          <exon e_start="32830" e_stop="32999"/>
          <exon e_start="33517" e_stop="33546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCTGTAAGTGCTGTCTGTTAGTAAATTGTAGGAGCTTTGATGAGCTTGAAATTCCCCTCTTCTTTGGGACTTTCATTGTAACTTTCTGAGTGGCTGCTTTGTGCGAGTAACTAGACAACTAATTCACTGTGTATGAGGACTTGTATGGTGCTCTGTACCTGTGACCATTTACTTGGCACTGGTTACATATATGTTTAGCTTTGTTGAATAATATCATCAGATCATTACCTTCTTAAATCAGCAGCCAACCAGCTACCCAAATATTTCTATTCATCTGGATACCGACTGTATTATATTAAAGGATATGATAAACCATATTTGTTTTTCAAGAACAAATACTTGATAAAAGATAGAGACTGTTAGATGAAATTGTCTTTACAGTCATATACATACTTGGTATGTTGTGAATGTACTGAAATAGGAAGCCTTTTGCTTTGACCATGTAGACTTTTTTGTGTGGATATACCTTCTTGAATGTTTCTTTAGTTTCTTATAATAATTTGTATTATTAACCGTGCAGCATGTTCCTAGAATAAACGGAGACATACCT</genome_strand>
        <mrna_strand>CTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCCTAGAATAAACGGAGACATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246500" ref_strand="+" ref_description="SGN-E246500 [cLEF-45-E3]">
      <seq>tttatcactgcttatacaacacaaatttataattttttttttgtatagcatatgaagtggaatcgaattaaaggtacaagtgattgatccaatttaggggtgagaagacgtttttgactttggcaactttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagaatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtanggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="30497" stop="33232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30797" g_stop="30869" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32365" g_stop="32757" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="467" r_length="394" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32830" g_stop="32932" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="570" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E246500" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30797" e_stop="30869"/>
          <exon e_start="32365" e_stop="32757"/>
          <exon e_start="32830" e_stop="32932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAGGTTAGTTTTTTGATGATTATTTTTCTGATTGATTTGTGATTAGTTCCTATTTTCATGATTTTTAGTTATTATTTTTTCAAGTTTGTTGATTTTTTTGCTGAATTGTTTTATGTTAAAGTTTCGAATTACTTCGTCAATAGGGAAAACGTGTAAATGGAGTAATTGGTGGTATTTTTTTAATTTTTTTTTGTATTTTGTATGGTTTTAGTGTAATTTGTTTTATTTTTATGGATTTTGGCGGGGAGAAGGGTTGAGGAGGAGGATTTATTTATTTGTTTGTAATTAAAAAGTTAGAAATTAGGTTTAAAATATTTGTATTGTATTAGTTGGTGAAAAATGAAGAATTAGACTGAAAGTTGAATTTTTGAAAGTCAAATGTAGAAATTAGAACTAGGGATGGCTATAAGATGGAAGAAATTTAGAACAAAAATGTTTAATGGGTGTTTTAGGGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGAATGAATTTATTTAAGTTGAGCAAAGGGTTTATCGGAAATAGTCTCTCTATCTTTGAGGTATGGATAATATCTGTGTACATCGTACTCTTCTCAAACCTCGCTTTGTGGGACTACGCTGAGTATGTTGTTGTTATTTAAGTGAAATGGATATACTTGGTAAAACATAAAATGTATTTGATGAGAATATTTTTCATAAAGAATTGTTTTTTTAACCCGGTAAATTTGTTGGATATAATAGTAGGTGATATTTGGTAATTGTACAAAGTGGTGGATTGGGTATGAAGATGATATTTTGGTGATATTGCTGAGTAATAAAGGTTGAAATATTAATAAAACAAGTAAATATGGAGTATGAATTAGAATATTTGCGAAGAAAAATGACTTCGGTAATAGAAGTCATTTTCCCTTTTTGGTAAAAGATTATCACTTTGTGAAAGGATCTTCTATAATTCAAGGTGGGGAAAATGCTGGAAAATGATATCATCTTGAGAAATTGTTTTTTGCAATACTGAGCAATAACTTTTAGGTAATTAGGCTGGTGAGCCAATGACTCTAAAGGTTGAGTTGATCCTTTCGTTTCTCTTTTCATGCTTTAGTTCTTTATCTAGGTAAGTTGTCGTTGGTATCGCCCAAAAATGTTTTACGAAAGTAAAATGCTTCCAAGATCAACTTTTTAGTGGGCTATAACAGTTGGTGTTGTATAACAGCAGTGCAGGTAGGTTGCAGTGGTGCTTTGTGATAATAACAAGTAATAAGAGGAATGTTTGATATATTGGTAGGGACTGCGGTATGGAGAAGGATAGAATTTTTTTTGGCAATCGAGCTGGCGGCTATGTTGTTTAAATATAGTCTATTGAACAATTATTCTAGTACCATCACCAGTATTTGTGTATAAAGAAGTACAATTGCGTGATCTTCCATTCCAACTGTTAAAAAACAAAAATCAGAGTTATCTTAGCCTTCTTAGCTGAGCCCTGCATTAACGTGCTCACTCTATTCAGGTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAG-ATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGA</genome_strand>
        <mrna_strand>TTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGAATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTANGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699481" ref_strand="+" ref_description="SGN-E699481 [FA10BB03]">
      <seq>ccctttttctgaaaggtgtaatgtcgtgtgagccagaatatgatgctgctcgtggggttcttagttttctcgatgtggaccaactttttagttccaactattacggtgacagtacacagcatgacattgaaatctgtcatgaacaatattccacagaaaacccttatcacccatcatattgcaatgttgacaatgatgaggttattgctcatgctctacaagaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttgagattgatggagaagtagggaagagaataaaccagctgagtgctattcctcatgttcctagaataaacggagacataccttcagttgatgaagcaacatctgaccaccaaaggctgctagatagattgcaattatttgacttggtggagcacaaagtgcaaggggatggaaattgtcagttccgtgctttatcagatcaattctatcgtggtcctgagcaccacaaatttgtcagacagcaagtagtcaatgagcttaaagaacatccggagatatatgaggggtatgtcccaatggcatatgatgaatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="32118" stop="35254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32416" g_stop="32757" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32830" g_stop="32999" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="512" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33517" g_stop="33590" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="586" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33591" i_stop="34208" i_length="618">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34209" g_stop="34263" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="641" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34264" i_stop="34697" i_length="434">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34698" g_stop="34772" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="716" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34773" i_stop="34893" i_length="121">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34894" g_stop="34954" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="777" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E699481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32416" e_stop="32757"/>
          <exon e_start="32830" e_stop="32999"/>
          <exon e_start="33517" e_stop="33590"/>
          <exon e_start="34209" e_stop="34263"/>
          <exon e_start="34698" e_stop="34772"/>
          <exon e_start="34894" e_stop="34954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCTGTAAGTGCTGTCTGTTAGTAAATTGTAGGAGCTTTGATGAGCTTGAAATTCCCCTCTTCTTTGGGACTTTCATTGTAACTTTCTGAGTGGCTGCTTTGTGCGAGTAACTAGACAACTAATTCACTGTGTATGAGGACTTGTATGGTGCTCTGTACCTGTGACCATTTACTTGGCACTGGTTACATATATGTTTAGCTTTGTTGAATAATATCATCAGATCATTACCTTCTTAAATCAGCAGCCAACCAGCTACCCAAATATTTCTATTCATCTGGATACCGACTGTATTATATTAAAGGATATGATAAACCATATTTGTTTTTCAAGAACAAATACTTGATAAAAGATAGAGACTGTTAGATGAAATTGTCTTTACAGTCATATACATACTTGGTATGTTGTGAATGTACTGAAATAGGAAGCCTTTTGCTTTGACCATGTAGACTTTTTTGTGTGGATATACCTTCTTGAATGTTTCTTTAGTTTCTTATAATAATTTGTATTATTAACCGTGCAGCATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAGGTATCTCTTGATCCGTCCGACTTAGGTTTTCAAGTGAACATTTTTTTTTGGTTTATGAAGAACTTAATGACATCTTTCCTAAAGGCAGTGCTTTGCGTAATTCTCTCCAATGTCCTGAGAACTTTTCGAGCTAATGAAATAAAGCTTCACTGCGAGAAATGTAAACCTGTCTTGTGATAGCTGTCTCACGTCTCCAGAAGCTTTTCTGGGTCTTCTTTTCTTAGGTTTTTCCTTTGTTTATAACTGGCCTTTCTAATTCCTGGTTGTTCCTAGAGCCTGCTATTCGAAAAGTAACACCTAACTCCCGAAGCATTTTATGAAAAAGCGAATCAAATAGGAGAGATGGGACTTGAGACAAGCACAGGAAACAATTGGTGTGCATTGAGCAAGCTAGCTTTCTGTTGCTTTGAATACTTATGAAGCATATTCAAGTAGATATTGTGATTTCTTTGTCCATAAAGTCACAGGACACCATGAATGTGTTCTTTTCTTTTTGGTTTTACTCCACATAAGTATAATCTGAAGTTGATATTTTTTCTAATTCAATGGATTGTTAATATTATTGCTTTTAAGTTATTTTCTGCTAAGCATCCTATGCTCTGGTTTTTCTAACTTCAGATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAGGTTACCCTCTTACCTGGTTCATTTGTGTTGTAGTAATGATACTAAACTGTCTAGATGGGGCTTTCATGTGTTGATTTTAAGTTGAAGCTAAATATTTATACTTCCGTTTCTCAAATGACTTGTAACATAGTTATCAATCATACACAAAAGAAGGCACCAGAATTGTTTTAAGTTTGTATTGAGAACTCAAAATGAGATATTGTTGGGCTGCTTACCCTGCCAAATTATTATAATTAGCTGTGAAATCTCATTAGTTAGACAAGTGGACAAATTAAATTTTCTTAACCTTATAATGCTTTTATGGGGTTTGGAAAGATGGCCCAGCTTTCCTTCTGTGGGATTAGTCTTCTTCAGGGAATCTAAGCTTGTTGAAATAAGGTGACATCCTACATGTTTCTTTTGCATATCTACTGACCTGTTCACTTTTGTTTCAGTTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAGGTGCTTGTTTAAGTGAATATGATTATCTTCTTTCTGATACTCTGGTTTTATACTTGAATTATTTCAAAAATTCGAATGCATTTTACTAAGTAGGTTTTGTAAAATCATTTGGTTTGATCAGCTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGA</genome_strand>
        <mrna_strand>CCCTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAG.........................................................................................................................CTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710867" ref_strand="+" ref_description="SGN-E710867 [FA57AF09]">
      <seq>aatgatgaggttattgctcatgctctaccctaagaatggtcagagttgtgcattacagaagatgctcaatcttcacatgcagatgatcagtacttgcaagcctccactggtgtacagcattggcatggttctccaagggagtactatgctgggcatgatgctggtgtggaagctaatgatgtagggccttcaagttcttgctctagtcctggagacagatcatacgatggagaagagtatgcttacacattggaaatacaagatgaatttgagattgatggagaagtagggaagagaataaaccagctgagtgctattcctcatgttcctagaataaacggagacataccttcagttgatgaagcaacatctgaccaccaaaggctgctagatagattgcaattatttgacttggtggagcacaaagtgcaaggggatggaaattgtcagttccgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="32307" stop="34574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32607" g_stop="32757" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32830" g_stop="32999" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="321" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33517" g_stop="33590" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="395" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33591" i_stop="34208" i_length="618">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34209" g_stop="34263" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="450" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E710867" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32607" e_stop="32757"/>
          <exon e_start="32830" e_stop="32999"/>
          <exon e_start="33517" e_stop="33590"/>
          <exon e_start="34209" e_stop="34263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTGGTATATTTCTTGTTTCCAATTTTGGGATGTCTCTCGAGTTCAAACATTCGCTAATATGCATATGATTCACAGGGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCTGTAAGTGCTGTCTGTTAGTAAATTGTAGGAGCTTTGATGAGCTTGAAATTCCCCTCTTCTTTGGGACTTTCATTGTAACTTTCTGAGTGGCTGCTTTGTGCGAGTAACTAGACAACTAATTCACTGTGTATGAGGACTTGTATGGTGCTCTGTACCTGTGACCATTTACTTGGCACTGGTTACATATATGTTTAGCTTTGTTGAATAATATCATCAGATCATTACCTTCTTAAATCAGCAGCCAACCAGCTACCCAAATATTTCTATTCATCTGGATACCGACTGTATTATATTAAAGGATATGATAAACCATATTTGTTTTTCAAGAACAAATACTTGATAAAAGATAGAGACTGTTAGATGAAATTGTCTTTACAGTCATATACATACTTGGTATGTTGTGAATGTACTGAAATAGGAAGCCTTTTGCTTTGACCATGTAGACTTTTTTGTGTGGATATACCTTCTTGAATGTTTCTTTAGTTTCTTATAATAATTTGTATTATTAACCGTGCAGCATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAGGTATCTCTTGATCCGTCCGACTTAGGTTTTCAAGTGAACATTTTTTTTTGGTTTATGAAGAACTTAATGACATCTTTCCTAAAGGCAGTGCTTTGCGTAATTCTCTCCAATGTCCTGAGAACTTTTCGAGCTAATGAAATAAAGCTTCACTGCGAGAAATGTAAACCTGTCTTGTGATAGCTGTCTCACGTCTCCAGAAGCTTTTCTGGGTCTTCTTTTCTTAGGTTTTTCCTTTGTTTATAACTGGCCTTTCTAATTCCTGGTTGTTCCTAGAGCCTGCTATTCGAAAAGTAACACCTAACTCCCGAAGCATTTTATGAAAAAGCGAATCAAATAGGAGAGATGGGACTTGAGACAAGCACAGGAAACAATTGGTGTGCATTGAGCAAGCTAGCTTTCTGTTGCTTTGAATACTTATGAAGCATATTCAAGTAGATATTGTGATTTCTTTGTCCATAAAGTCACAGGACACCATGAATGTGTTCTTTTCTTTTTGGTTTTACTCCACATAAGTATAATCTGAAGTTGATATTTTTTCTAATTCAATGGATTGTTAATATTATTGCTTTTAAGTTATTTTCTGCTAAGCATCCTATGCTCTGGTTTTTCTAACTTCAGATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG</genome_strand>
        <mrna_strand>AATGATGAGGTTATTGCTCATGCTCTACCCTAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG........................................................................GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397818" ref_strand="+" ref_description="SGN-E397818 [TUS-24-K24](-)">
      <seq>gatagattgcaattatttgacttggtggagcacaaagtgcaaggggatggaaattgtcagttccgtgctttatcagatcaattctatcgtggtcctgagcaccacaaatttgtcagacagcaagtagtcaatgagcttaaagaacatccggagatatatgaggggtatgtcccaatggcatatgatgaatacttgaagaggatgtccaagaatggggaatggggagatcatgttacgttgcaggctgccgctgactcgtatggcgtgaaaattcttgttataacttcattcaaagacacatgttacattgagatccttccgaagaatcaaaagtcaaatagagtcatatacttgagtttctgggcggaggtgcactacaactcaatctaccctcaaggagacttcctgccatgtgatgatttcaagaagaagaagaagaagtggagtttttggaacaagcattaagagttcttgacctgttttattcaagctgaactttacctacctgcaatggcatcatctcggttacggtacagaggttccgggtcacgtacttactttacattacaacaacagctatgcctcaatcccgaacaagttgggggtcaagtagctttgcattattttttctatatgataaatagtacttaactttatattcttataattgttcacataattattattaacatatagtactagtttgttctaagttggcataataagatcatattgttatattcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="33907" stop="37159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34209" g_stop="34263" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="60" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34264" i_stop="34697" i_length="434">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34698" g_stop="34772" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="135" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34773" i_stop="34893" i_length="121">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34894" g_stop="34967" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="209" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35050" g_stop="35098" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="258" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35099" i_stop="35559" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35560" g_stop="35644" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="343" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35645" i_stop="36049" i_length="405">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36050" g_stop="36106" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="400" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36107" i_stop="36513" i_length="407">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36514" g_stop="36858" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="745" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="756"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E397818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34209" e_stop="34263"/>
          <exon e_start="34698" e_stop="34772"/>
          <exon e_start="34894" e_stop="34967"/>
          <exon e_start="35050" e_stop="35098"/>
          <exon e_start="35560" e_stop="35644"/>
          <exon e_start="36050" e_stop="36106"/>
          <exon e_start="36514" e_stop="36858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAGGTTACCCTCTTACCTGGTTCATTTGTGTTGTAGTAATGATACTAAACTGTCTAGATGGGGCTTTCATGTGTTGATTTTAAGTTGAAGCTAAATATTTATACTTCCGTTTCTCAAATGACTTGTAACATAGTTATCAATCATACACAAAAGAAGGCACCAGAATTGTTTTAAGTTTGTATTGAGAACTCAAAATGAGATATTGTTGGGCTGCTTACCCTGCCAAATTATTATAATTAGCTGTGAAATCTCATTAGTTAGACAAGTGGACAAATTAAATTTTCTTAACCTTATAATGCTTTTATGGGGTTTGGAAAGATGGCCCAGCTTTCCTTCTGTGGGATTAGTCTTCTTCAGGGAATCTAAGCTTGTTGAAATAAGGTGACATCCTACATGTTTCTTTTGCATATCTACTGACCTGTTCACTTTTGTTTCAGTTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAGGTGCTTGTTTAAGTGAATATGATTATCTTCTTTCTGATACTCTGGTTTTATACTTGAATTATTTCAAAAATTCGAATGCATTTTACTAAGTAGGTTTTGTAAAATCATTTGGTTTGATCAGCTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAAGTAATTAACATACCTTTGTTTCTCTATGTTGAAACTTCTTTTCTCCTTTAATCTAAATCTGCTTTTATTTTGGTCTAACCAGGAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCGGTATTGATTATTGCTCTTACTTTGCTTCCTTTGTTTTATTTCTCTCCATTTGATTGTGGTCTTTTGGTTGGTCACTTTACTGTGGAAATAAGAACTTTAAGCTATTGCTAGACAGACCATAATTTGAATGTCCTGGTCCTGGTATAGAGGCATTGGATATTCAAGTAGCTTGTTAATTGCACATTGATGGGCGTTGAGGAAGTAAACATGCTTCTATATAATCTTTACTCGTGGTCACGTAGTTGTTCATGACCGGATATTAACCATTTATTTTTTAATGTGGAAGAAAATGCACGTCAGCGTCCCTCTCCATCTTGTATTTCCTTCTTTCACTCTATCATGTGTGGTCTTGATGCATTCTTTCAAGATTTTGCTTGTGGTGATCTAAGATCAGAATCCATTGGTTTATAAATGAACTTATTTCTGTTGCACATTTGACTGTCTTTTTGCCTTGTGGGCAGTATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAGGTAACTAGTTCTCAAATTTTCAATTGCTTTTACCTTTCTGTAATATATCCTCTATTTAAAGAATGTGATTGAACAATTTTTACTTTTTTTTAAAAAAAAAAGAGAATTTGGAATTGGGAGTTTATATTTAGTGACAATAGAAAGCTTGAAACTGTAATAAACAGGGCAAACTTTATATCGGTTAATGCATCCTTGTCATCTATTCTACGCCATTGTATAATCAATACCTCTACTGTAAATCTGGAGATTGCTTGGAAAAGGAATTGAAGTTTGAATAAAAATGTTTGTTGACGGGTATTTTGTGGCGGGGCTGCAAACTAGATGAAAGAGCGGTGTTTGAAGTCTTGATATCTTGATTCCGTCAAAGAAACTTAATTGTTTCTCTTTGTTCTTTTCTTCGTGCAGTCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAGGTTATTACTTTTGTACATTTTTGCCCTCTTTCCATATGATTTGTCTTAGCATTGTTAAGTCGTCTATAGGAAGGAAGAAAACGAAGATCTTGAAAAGCCGGAGGGGGTACATGCACATTTTCCCTGAATTAACATATACTCCCTTCCTTCCTGTTTACGTGATACTATTTCCTTATTAGTCTATTCCAAAAGATCGACACAGTTCTATATCTAGAAACAATTAAACTGTGTACTTCAATTTCACACCTAATCAGAAATGATGTTATCGTATGTTTCAAAAGTCTTCATTTTTTCTTGAATTCCGCGTTGATTCAAAACTATGTCACGTAAATCGGGACTTTGGGATGAAGGGAGAATTTTTGTCACTTGCTTTCTTCATTTACATTATCCTAAATGCTGCATTCCAGACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTCAT</genome_strand>
        <mrna_strand>ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAG.........................................................................................................................CTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAA..................................................................................GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................TCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331592" ref_strand="-" ref_description="SGN-E331592 [cTOD-9-L14]">
      <seq>tatatgaggggtatgtcccaatggcatatgatgaatacttgaagaggatgtccaagaatggggaatggggagatcatgttacgttgcaggctgccgctgactcgtatggcgtgaaaattcttgttataacttcattcaaagacacatgttacattgagatccttccgaagaatcaaaagtcaaatagagtcatatacttgagtttctgggcggaggtgcactacaactcaatctaccctcaaggagacttcctgccatgtgatgatttcaagaagaagaagaagaagtggagtttttggaacaagcattaagagttcttgacctgttttattcaagctgaactttacctacctgcaatggcatcatctcggttacggtacagaggttccgggtcacgtacttactttacattacaacaacagctatgcctcaatcccgaacaagttgggggtcaagtagctttgcattattttttctatatgataaatagtacttaactttatattcttataattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="34613" stop="37085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34913" g_stop="34967" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35050" g_stop="35098" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="104" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35099" i_stop="35559" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35560" g_stop="35644" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="189" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35645" i_stop="36049" i_length="405">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36050" g_stop="36106" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="246" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36107" i_stop="36513" i_length="407">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36514" g_stop="36785" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="518" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E331592" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331592" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34913" e_stop="34967"/>
          <exon e_start="35050" e_stop="35098"/>
          <exon e_start="35560" e_stop="35644"/>
          <exon e_start="36050" e_stop="36106"/>
          <exon e_start="36514" e_stop="36785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAAGTAATTAACATACCTTTGTTTCTCTATGTTGAAACTTCTTTTCTCCTTTAATCTAAATCTGCTTTTATTTTGGTCTAACCAGGAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCGGTATTGATTATTGCTCTTACTTTGCTTCCTTTGTTTTATTTCTCTCCATTTGATTGTGGTCTTTTGGTTGGTCACTTTACTGTGGAAATAAGAACTTTAAGCTATTGCTAGACAGACCATAATTTGAATGTCCTGGTCCTGGTATAGAGGCATTGGATATTCAAGTAGCTTGTTAATTGCACATTGATGGGCGTTGAGGAAGTAAACATGCTTCTATATAATCTTTACTCGTGGTCACGTAGTTGTTCATGACCGGATATTAACCATTTATTTTTTAATGTGGAAGAAAATGCACGTCAGCGTCCCTCTCCATCTTGTATTTCCTTCTTTCACTCTATCATGTGTGGTCTTGATGCATTCTTTCAAGATTTTGCTTGTGGTGATCTAAGATCAGAATCCATTGGTTTATAAATGAACTTATTTCTGTTGCACATTTGACTGTCTTTTTGCCTTGTGGGCAGTATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAGGTAACTAGTTCTCAAATTTTCAATTGCTTTTACCTTTCTGTAATATATCCTCTATTTAAAGAATGTGATTGAACAATTTTTACTTTTTTTTAAAAAAAAAAGAGAATTTGGAATTGGGAGTTTATATTTAGTGACAATAGAAAGCTTGAAACTGTAATAAACAGGGCAAACTTTATATCGGTTAATGCATCCTTGTCATCTATTCTACGCCATTGTATAATCAATACCTCTACTGTAAATCTGGAGATTGCTTGGAAAAGGAATTGAAGTTTGAATAAAAATGTTTGTTGACGGGTATTTTGTGGCGGGGCTGCAAACTAGATGAAAGAGCGGTGTTTGAAGTCTTGATATCTTGATTCCGTCAAAGAAACTTAATTGTTTCTCTTTGTTCTTTTCTTCGTGCAGTCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAGGTTATTACTTTTGTACATTTTTGCCCTCTTTCCATATGATTTGTCTTAGCATTGTTAAGTCGTCTATAGGAAGGAAGAAAACGAAGATCTTGAAAAGCCGGAGGGGGTACATGCACATTTTCCCTGAATTAACATATACTCCCTTCCTTCCTGTTTACGTGATACTATTTCCTTATTAGTCTATTCCAAAAGATCGACACAGTTCTATATCTAGAAACAATTAAACTGTGTACTTCAATTTCACACCTAATCAGAAATGATGTTATCGTATGTTTCAAAAGTCTTCATTTTTTCTTGAATTCCGCGTTGATTCAAAACTATGTCACGTAAATCGGGACTTTGGGATGAAGGGAGAATTTTTGTCACTTGCTTTCTTCATTTACATTATCCTAAATGCTGCATTCCAGACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTT</genome_strand>
        <mrna_strand>TATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAA..................................................................................GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................TCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256924" ref_strand="+" ref_description="SGN-E256924 [cLEG-44-M1]">
      <seq>aagaatggggaatggggagatcatgttacgttgcaggctgccgctgactcggtattgattattgctcttactttgcttcctttgttttatttctctccatttgattgtggtcttttggttggtcactttactgtggaaataagaactttaagctattgctagacagaccataatttgaatgtcctggtcctggtatagaggcattggatattcaagtagcttgttaattgcacattgatgggcgttgaggaagtaaacatgcttctatataatctttactcgtggtcacgtagttgttcatgaccggatattaaccatttattttttaatgtggaagaaaatgcacgtcagcgtccctctccatcttgtatttccttctttcactctatcatgtgtggtcttgatgcattctttcaagattttgcttgaggtgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="34748" stop="35785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34966" g_stop="34967" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35050" g_stop="35485" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="438" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E256924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34966" e_stop="34967"/>
          <exon e_start="35050" e_stop="35485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAATTAACATACCTTTGTTTCTCTATGTTGAAACTTCTTTTCTCCTTTAATCTAAATCTGCTTTTATTTTGGTCTAACCAGGAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCGGTATTGATTATTGCTCTTACTTTGCTTCCTTTGTTTTATTTCTCTCCATTTGATTGTGGTCTTTTGGTTGGTCACTTTACTGTGGAAATAAGAACTTTAAGCTATTGCTAGACAGACCATAATTTGAATGTCCTGGTCCTGGTATAGAGGCATTGGATATTCAAGTAGCTTGTTAATTGCACATTGATGGGCGTTGAGGAAGTAAACATGCTTCTATATAATCTTTACTCGTGGTCACGTAGTTGTTCATGACCGGATATTAACCATTTATTTTTTAATGTGGAAGAAAATGCACGTCAGCGTCCCTCTCCATCTTGTATTTCCTTCTTTCACTCTATCATGTGTGGTCTTGATGCATTCTTTCAAGATTTTGCTTGTGGTGATCTA</genome_strand>
        <mrna_strand>AA..................................................................................GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCGGTATTGATTATTGCTCTTACTTTGCTTCCTTTGTTTTATTTCTCTCCATTTGATTGTGGTCTTTTGGTTGGTCACTTTACTGTGGAAATAAGAACTTTAAGCTATTGCTAGACAGACCATAATTTGAATGTCCTGGTCCTGGTATAGAGGCATTGGATATTCAAGTAGCTTGTTAATTGCACATTGATGGGCGTTGAGGAAGTAAACATGCTTCTATATAATCTTTACTCGTGGTCACGTAGTTGTTCATGACCGGATATTAACCATTTATTTTTTAATGTGGAAGAAAATGCACGTCAGCGTCCCTCTCCATCTTGTATTTCCTTCTTTCACTCTATCATGTGTGGTCTTGATGCATTCTTTCAAGATTTTGCTTGAGGTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541832" ref_strand="+" ref_description="SGN-E541832 [TUS-62-N7](-)">
      <seq>gaggttattacttttgtacatttttgccctcttcccatatgatttgtcttagcattgttaagtcgtctataggaaggaagaaaacgaagatcttgaaaagccggagggggtacatgcacattttccctgaattaacatatactcccttccttcctgtttacgtgatactatttccttattagtctattccaaaagatcgacacagttctatatctagaaacaattaaactgtgtacttcaatttcacacctaatcagaaatgatgttatcgtatgtttcaaaagtcttcattttttcttgaattccgcgttgattcaaaactatgtcacgtaaatcgggactttgggatgaagggagaatttttgtcacttgctttcttcatttacattatcctaaatgctgcattccagacttcctgccatgtgatgatttcaagaagaagaagaagaagtggagtttttggaacaagcattaagagttcttgacctgttttattcaagctgaactttacctacctgcaatggcatcatctcggttacggtacagaggttccgggtcacgtacttactttacattacaacaacagctatgcctcaatcccgaacaagttgggggtcaagtagctttgcattattttttctatatgataaatagtacttaactttatattcttataattgttcacataattattattaacatatagtactagtttgttctaagttggcataataagatcatattgttatattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="35804" stop="37159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36104" g_stop="36856" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="764"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E541832" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36104" e_stop="36856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTATTACTTTTGTACATTTTTGCCCTCTTTCCATATGATTTGTCTTAGCATTGTTAAGTCGTCTATAGGAAGGAAGAAAACGAAGATCTTGAAAAGCCGGAGGGGGTACATGCACATTTTCCCTGAATTAACATATACTCCCTTCCTTCCTGTTTACGTGATACTATTTCCTTATTAGTCTATTCCAAAAGATCGACACAGTTCTATATCTAGAAACAATTAAACTGTGTACTTCAATTTCACACCTAATCAGAAATGATGTTATCGTATGTTTCAAAAGTCTTCATTTTTTCTTGAATTCCGCGTTGATTCAAAACTATGTCACGTAAATCGGGACTTTGGGATGAAGGGAGAATTTTTGTCACTTGCTTTCTTCATTTACATTATCCTAAATGCTGCATTCCAGACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTC</genome_strand>
        <mrna_strand>GAGGTTATTACTTTTGTACATTTTTGCCCTCTTCCCATATGATTTGTCTTAGCATTGTTAAGTCGTCTATAGGAAGGAAGAAAACGAAGATCTTGAAAAGCCGGAGGGGGTACATGCACATTTTCCCTGAATTAACATATACTCCCTTCCTTCCTGTTTACGTGATACTATTTCCTTATTAGTCTATTCCAAAAGATCGACACAGTTCTATATCTAGAAACAATTAAACTGTGTACTTCAATTTCACACCTAATCAGAAATGATGTTATCGTATGTTTCAAAAGTCTTCATTTTTTCTTGAATTCCGCGTTGATTCAAAACTATGTCACGTAAATCGGGACTTTGGGATGAAGGGAGAATTTTTGTCACTTGCTTTCTTCATTTACATTATCCTAAATGCTGCATTCCAGACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540170" ref_strand="+" ref_description="SGN-E540170 [TUS-60-E22]">
      <seq>cggcaatttggctgcgattgtggagtcatagagaaaaatccaccacctaccggaaatccagaaacaggcgtagctcgtgttaacggagctaaaaccgacggttgtgactgagacaacggtatgttctccgacgtcgtagtgacttgagtcgccggaaccgtacctgttcctgtagcagcgatgattgctggttcagcgttacggagaagccactctatcgtttctccgtcagtcctatgacctagttccttcgttaattgaaaaacacgcgccgcgcataacgccggcatccttacgcgccgtcctctaccattgacttttgtatgcctgtctttgctagatgaaacggataacgcattcttcttcttcgtcggaacgaccgcgagcgcagttttgccatttgtttctgagttaacgctaccgttcccgacgccggagattgcaccggaaacaactatttctgaacccatttttagggtttttttttttttttttgaatggagggaaaagtagtactttgtgctttagggatgaattttgatttttaatagaccccacaaaaatggaaaagagtttttataggaaaaaaaaattgatgtgagagtttctgtatcttcttgggaagtgtgtttggacttgaagggcccattaagcttcatgggcccaatactatgttgtggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="37479" stop="38759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37779" g_stop="38459" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E540170" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37779" e_stop="38459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAATTTGGCTGCGATTGTGGAGTCATAGAGAAAAATCCACCACCTACCGGAAATCCAGAAACAGGCGTAGCTCGTGTTAACGGAGCTAAAACCGACGGTTGTGACTGAGACAACGGTATGTTCTCCGACGTCGTAGTGACTTGAGTCGCCGGAACCGTACCTGTTCCTGTAGCAGCGATGATTGCTGGTTCAGCGTTACGGAGAAGCCACTCTATCGTTTCTCCGTCAGTCCTATGACCTAGTTCCTTCGTTAATTGAAAAACACGCGCCGCGCATAACGCCGGCATCCTTACGCGCCGTCCTCTACCATTGACTTTTGTATGCCTGTCTTTGCTAGATGAAACGGATAACGCATTCTTCTTCTTCGTCGGAACGACCGCGAGCGCAGTTTTGCCATTTGTTTCTGAGTTAACGCTACCGTTCCCGACGCCGGAGATTGCACCGGAAACAACTATTTCTGAACCCATTTTTAGGG---TTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAATAGACCCCACAAAAATGGAAAAGAGTTTTTATAGGAAAAAAAAATTGATGTGAGAGTTTCTGTATCTTCTTGGGAAGTGTGTTTGGACTGAAAGGGCCCATTAAGCTTCATGGGCCCAATACTATGTTGTGGATCC</genome_strand>
        <mrna_strand>CGGCAATTTGGCTGCGATTGTGGAGTCATAGAGAAAAATCCACCACCTACCGGAAATCCAGAAACAGGCGTAGCTCGTGTTAACGGAGCTAAAACCGACGGTTGTGACTGAGACAACGGTATGTTCTCCGACGTCGTAGTGACTTGAGTCGCCGGAACCGTACCTGTTCCTGTAGCAGCGATGATTGCTGGTTCAGCGTTACGGAGAAGCCACTCTATCGTTTCTCCGTCAGTCCTATGACCTAGTTCCTTCGTTAATTGAAAAACACGCGCCGCGCATAACGCCGGCATCCTTACGCGCCGTCCTCTACCATTGACTTTTGTATGCCTGTCTTTGCTAGATGAAACGGATAACGCATTCTTCTTCTTCGTCGGAACGACCGCGAGCGCAGTTTTGCCATTTGTTTCTGAGTTAACGCTACCGTTCCCGACGCCGGAGATTGCACCGGAAACAACTATTTCTGAACCCATTTTTAGGGTTTTTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAATAGACCCCACAAAAATGGAAAAGAGTTTTTATAGGAAAAAAAAATTGATGTGAGAGTTTCTGTATCTTCTTGGGAAGTGTGTTTGGACTTGAAGGGCCCATTAAGCTTCATGGGCCCAATACTATGTTGTGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286514" ref_strand="+" ref_description="SGN-E286514 [cLES-12-D23]">
      <seq>ggcaatttggctgcgattgtggagtcatagagaaaaatccaccacctaccggaaatccagaaacaggcgtagctcgtgttaacggagctaaaaccgacggttgtgactgagacaacggtatgttctccgacgtcgtagtgacttgagtcgccggaaccgtacctgttcctgtagcagcgatgattgctggttcagcgttacggagaagccactctatcgtttctccgtcagtcctatgacctagttccttcgttaattgaaaaacacgcgccgcgcataacgccggcatccttacgcgccgtcctctaccattgacttttgtatgcctgtctttgctagatgaaacggataacgcattcttcttcttcgtcggaacgaccgcgagcgcagttttgccatttgtttctgagttaacgctaccgttcccgacgccggagattgcaccggaaacaactatttctgaacccatttttagggtttttttttttttttttgaatggagggaaaagtagtactttgtgctttagggatgaattttgatttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="37480" stop="38624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37780" g_stop="38324" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E286514" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37780" e_stop="38324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTTGGCTGCGATTGTGGAGTCATAGAGAAAAATCCACCACCTACCGGAAATCCAGAAACAGGCGTAGCTCGTGTTAACGGAGCTAAAACCGACGGTTGTGACTGAGACAACGGTATGTTCTCCGACGTCGTAGTGACTTGAGTCGCCGGAACCGTACCTGTTCCTGTAGCAGCGATGATTGCTGGTTCAGCGTTACGGAGAAGCCACTCTATCGTTTCTCCGTCAGTCCTATGACCTAGTTCCTTCGTTAATTGAAAAACACGCGCCGCGCATAACGCCGGCATCCTTACGCGCCGTCCTCTACCATTGACTTTTGTATGCCTGTCTTTGCTAGATGAAACGGATAACGCATTCTTCTTCTTCGTCGGAACGACCGCGAGCGCAGTTTTGCCATTTGTTTCTGAGTTAACGCTACCGTTCCCGACGCCGGAGATTGCACCGGAAACAACTATTTCTGAACCCATTTTTAGGG---TTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAAT</genome_strand>
        <mrna_strand>GGCAATTTGGCTGCGATTGTGGAGTCATAGAGAAAAATCCACCACCTACCGGAAATCCAGAAACAGGCGTAGCTCGTGTTAACGGAGCTAAAACCGACGGTTGTGACTGAGACAACGGTATGTTCTCCGACGTCGTAGTGACTTGAGTCGCCGGAACCGTACCTGTTCCTGTAGCAGCGATGATTGCTGGTTCAGCGTTACGGAGAAGCCACTCTATCGTTTCTCCGTCAGTCCTATGACCTAGTTCCTTCGTTAATTGAAAAACACGCGCCGCGCATAACGCCGGCATCCTTACGCGCCGTCCTCTACCATTGACTTTTGTATGCCTGTCTTTGCTAGATGAAACGGATAACGCATTCTTCTTCTTCGTCGGAACGACCGCGAGCGCAGTTTTGCCATTTGTTTCTGAGTTAACGCTACCGTTCCCGACGCCGGAGATTGCACCGGAAACAACTATTTCTGAACCCATTTTTAGGGTTTTTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540167" ref_strand="+" ref_description="SGN-E540167 [TUS-60-E22](-)">
      <seq>gaacccatttttagggtttttttttttttttttgaatggagggaaaagtagtactttgtgctttagggatgaattttgatttttaatagaccccacaaaaatggaaaagagtttttataggaaaaaaaaattgatgtgagagtttctgtatcttcttgggaagtgtgtttggactgaaagggcccattaagcttcatgggcccaatactatgttgtggatcccacttcagacaattattctttttttttttaaataaaaataacactttagttgtttaaaaaatagaaaacaaatttgttgaaataaatagggaaaatgcactgcctctcaaactatgctcgaaattccagagacacacttatactatactaaagtcctattaccctctgaacttattttataaataattttctactctttttcgacttacgtgacactaatttgaaaaaaaagtcaatcagtgttggacccacaagatagtgccacgtaggctgaaaagaagtagaaaaattgttaataaaataaattcaggggataataagacattagtatagtataagtgtgtctttgagatttcgtgcataggttgaatggttacctgtgcattatcccaaacaaaaacatagtatttttttttttggttttgcatttgtatgaatttaaggggatgagagaaaataatgcatatatggagattttgtatttgtgagtgtatgaaaagatatttaaggttatagttatgaaattaaagcacaagctattataataaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="37941" stop="53465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38241" g_stop="39017" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39018" i_stop="40521" i_length="1504">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.684" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40522" g_stop="40534" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="792" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E540167" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38241" e_stop="39017"/>
          <exon e_start="40522" e_stop="40534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCATTTTTAGGGT--TT-TTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAATAGACCCCACAAAAATGGAAAAGAGTTTTTATAGGAAAAAAAAATTGATGTGAGAGTTTCTGTATCTTCTTGGGAAGTGTGTTTGGACTGAAAGGGCCCATTAAGCTTCATGGGCCCAATACTATGTTGTGGATCCCACTTCAGACAATTATTCTTTTTTTTTTTAAATAAAAATAACACTTTAGTTGTTTAAAAAATAGAAAACAAATTTGTTGAAATAAATAGGGAAAATGCACTGCCTCTCAAACTATGCTCGAAATTCCAGAGACACACTTATACTATACTAAAGTCCTATTACCCTCTGAACTTATTTTATAAATAATTTTCTACTCTTTTTCGACTTACGTGACACTAATTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGCCACGTAGGCTGAAAAGAAGTAGAAAAATTGTTAATAAAATAAATTCAGGGGATAATAAGACATTAGTATAGTATAAGTGTGTCTTTGAGATTTCGTGCATAGGTTGAATGGTTACCTGTGCATTATCCCAAACAAAAACATAGTATTTTTTTTTTTTGGTTTTGCATTTGTATGAATTTAAGGGGATGAGAGAAAATAATGCATATATGGAGATTTTGTATTTGTGAGTGTATGAAAAGATATTTAAGGTTATAGTTATGAAATTAAAGCACAAGCTATTATAATAAAGAGAAATGGTGATTTTGTTTTTTATTTGTTTCGAAAGTTTTTGAATTGTTTTTTATAATAGGATAACGAGTGATTACTCGTGATAGTTATTGTTGTATCATATTCTAAATTTAATAATCTTTATAAATCTCATGTTACAATTGTCTTGGACCAATTTTGAAACTATTTTTAATAGTTTGTATATGCATAAATCATATTGTATTCTTTGAGATACGTCGATTGTGTTATATTATTTCATCATAAATAAATGATCTTATTATAAGGGAAAATGCGGATGAAAAAACACTTTAAGATTTATCTACGGTAAATTTATTAGATTTTAAAATTATGAATATATTTAGAACGAAAACATATCCCTTACAATTAAAATTCGGTTTATATGAGTATATTAGTTATTACAAAAAGACACCAATCAAACAATGTAGTATCTTTATTACGGTTTACTTATCATATTTTTGAATAAGAAATAAACGTGCTAAAACATGTATTGTTATAAAAAATAAAAAGGATTTTGATTTTTTTCTTTAATTTTATTTTACTTTAATAATCGTGAAGAACAATTGATACGAGGTTACAGAAAATATGGATTATTAAATAAAGTTAACTAGATAGTTAAAGGCATTGTCTCTTGACTTTCACTTATTGTTACTAGTTATTAGTCATAACATTACTTTTGTAATTTCTTATGTTTTGATTTTGATTATTATTTATCGTTTTTTTGGTACGTTGATTATTATCTTGTCATGATTACTATATAGATTTATTTGTCAAGTTATCTATAGTATTTTATCAGTACTTTTTTATTTTTACTAATCTTTTTTCTAGACTACTTTACACTATTTTTTCTTGTGGAACTGAGGATCTATTGAAACAATTTCTCTATCTCCAAGCTAAAGACAAAATCTGCATACATTTTATTCTTTCCAAATATTATTTTATAAAATTACGTCAAATATATTATTATTGTACATATTTTTATAGGTAATGCATAGAGCAAAATATTAGCAATATTATAGGGTGAAAGTGTATTAACAATGTTACTTTCCCAAAATATGAATAAAATAAACAATGTCCAAATCTACCTAAACTCAATTATAAATTTTACATCATCACAATTCAAATATTCAACTATTATAAAAGGGAATCAAATTTTCTTGTGGTATATAAATTGTTAGATATTTATAATTACACACTAAAAGCTTATAATTATATCAAAAGGAATATAATGTACCAAAATATTTTAATTACTATGATTTATGACAAGGGCATGTTTTAGAAAAAAAGTAAAAGATGGAGGGGTATTATAGTAAAGACAAAATAAAAAATCTCATCCTGTTGGGTTTTATCAAATTCTTGAGGCAAAGAACAAGTTCAAACATTTGCAAAAGCCATCACTTCCATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAG</genome_strand>
        <mrna_strand>GAACCCATTTTTAGGGTTTTTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAATAGACCCCACAAAAATGGAAAAGAGTTTTTATAGGAAAAAAAAATTGATGTGAGAGTTTCTGTATCTTCTTGGGAAGTGTGTTTGGACTGAAAGGGCCCATTAAGCTTCATGGGCCCAATACTATGTTGTGGATCCCACTTCAGACAATTATTCTTTTTTTTTTTAAATAAAAATAACACTTTAGTTGTTTAAAAAATAGAAAACAAATTTGTTGAAATAAATAGGGAAAATGCACTGCCTCTCAAACTATGCTCGAAATTCCAGAGACACACTTATACTATACTAAAGTCCTATTACCCTCTGAACTTATTTTATAAATAATTTTCTACTCTTTTTCGACTTACGTGACACTAATTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGCCACGTAGGCTGAAAAGAAGTAGAAAAATTGTTAATAAAATAAATTCAGGGGATAATAAGACATTAGTATAGTATAAGTGTGTCTTTGAGATTTCGTGCATAGGTTGAATGGTTACCTGTGCATTATCCCAAACAAAAACATAGTA-TTTTTTTTTTTGGTTTTGCATTTGTATGAATTTAAGGGGATGAGAGAAAATAATGCATATATGGAGATTTTGTATTTGTGAGTGTATGAAAAGATATTTAAGGTTATAGTTATGAAATTAAAGCACAAGCTATTATAATAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244352" ref_strand="+" ref_description="SGN-E244352 [cLEF-3-K5]">
      <seq>agccatcacttccattcatcttcaatcttcaaatgaagcttttttaattcaagaaaatactcatgctagcactaaaacccctcttaattctgaaaaaagatatcttttttacaccccacataccagaaaaatagtgaagagtttcacaagatagcttagcttaaagctatggaggctgctggaagaaaccttctttcttcaccaccaactttttctcagaaaacccaactcaggaattgttcttcttcagttctgatgcttcatgagcatgctgctcctgtgctttcttcagtgccccatacttatttgggtcgatatgttcctgcatcagctatcggtccggagcagcattttgagaatcggctgcaattgcacctagtaaaggaagagaaaacatccctggcaacaatagataggaggcttgtggaagctgcatcctcagaattggaagagaatgatgctgttgattcagagcaaaatataaatgctttgcaagtgcagctacttcattggcctggtccatcatattcgtaagatgaagtttcccccgtattatctgaagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="40096" stop="43684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40396" g_stop="40645" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40646" i_stop="42817" i_length="2172">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42818" g_stop="42969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="402" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42970" i_stop="43129" i_length="160">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43130" g_stop="43267" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="540" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43268" i_stop="43358" i_length="91">
            <donor d_prob="0.355" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43359" g_stop="43384" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="566" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E244352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40396" e_stop="40645"/>
          <exon e_start="42818" e_stop="42969"/>
          <exon e_start="43130" e_stop="43267"/>
          <exon e_start="43359" e_stop="43384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCACTTCCATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAGGTGAATTGTTGAATTTTGCCCAAATGGGATATAATAGAACAGTGAGGATTCATGTAGCTGAATTTTAACTAGTTTGGATGAGGGTAATTGTTGTTTTATCAATGCATTTCTGTATTTATGGTTCTTCTAGTGTAGTAGCATCCCATTTTATTGATATTTGTGGCTTTGGTTTTGTAAAGTTAATGCCCTTAGTGAGCACCCAAGGTGTGGCCTGAAGTGAGTTGAGAATGATGATGTCTTAGGTTCAACTTCCAATTAAGACAAAAAAAAACACTAGATGATTACTTACCATATGCCGTAGCTGGTGGGAGGTGGCAGGTAAAAAAGTTGATGGCTTTAGTGAAATGAGGCGCCACAGTTGCTGAATTAGCTATTTAATGTGCTTTCTAGTTATGAGGATTCATGTAACCCAATTCAACTAGTTTTGGTTGAAGAGTAGTTGTTGTTGTACATGCGTGGAATCCCAATGTTTTTGCTTTGTTTGGTTATTCTAGCATTCCCATTTATCAATATTTGTGGCTTTAGTTTTATAAAGTTAATACCTTAGTGTTGAATTTTTGGAATGGACCTTGTCCAAATGGAGCAGAAATGAAGAATGGATAAAGAGGATTCATGTAGCCGAACCCAGCTAATAAATTGAAGGGTAATTGTTGTTGTAAATGTGTTCAAATTCTCATTGTTTTTCCTTCTTGTTCTTCTAACATTCCCATTTATCAATATTTGTAGTTTTAGTTTTTTAAAGTTAATGCCTTTAGTGAAATGTGTTGAATTATTGGAATGAACTTGTCCAAATGGAGAAGAAATGAAGAATGGATAATGACAATTCATTTAGCCAAATCCAACTAGATTAAATTGAAGCATGATTATTGTTGTAAATGCGTTGAAGTCCCGTTGGTTTTGCCTTCTTGATTTTTCTAGCATTCCCAATCATCGATATTTGCAACTTTAGTTTTATTATGTTAATGTGTTTTATATTTTGAAATGAAACTTGTTCAAATGGAGAAGGAAAGCAGAACAGGTAGTGAGGATTCATATAGCTGAATTCTGTTAGTTTAGATTGAAGCATAATTGTTGTTGTAAATGTTGAATTCCCACTGTTTTTGGCTTGGTTTTTCTAGCAGTCCAGTTATACATGTTTGAAACTTTAGTTTTATAAAGTTAATGCCTTAAGTGAAATGTGGCATTTACTTGATTTAATGTGCTTCTAGATCACTTCATTGTTATGATATTGATGCTAGATTGTTGCTTACTCAGTTGATAGAAAAGACCATTAATTCTATATTAAGTTATCAGTGTTGGTGGAAGACTGTTGTCTCATTTTATGGTCTTGGGCAATCCTTGACTCATGAGCTAGCTTTTTGAGTTGAGTTATATACATGCATTTTTGAATTATCTTAAAGGTTTTTCTTACCGGGATTCGATTATGCTGTTCTGTTAACAAAATGTTTCCATCTCCCACTATATTTCTATTCTCTCCTTATCATTATTTTATCAGAATGATAGAGAAGTGTCATTATTTGGTCAAAAGTCACACATTCTTTTGTGTTATGCTATGATGGTCAGACTATCCTAGTCTTTTACACAATATGATGACCGTCACCAACCACAGATTGAAGGTTCAATATTGAAATGGTCGATAATAGACATAAGAATTTAAGTATATTTAACTAAAATTGTTCTTCTTTAGGATTGATAATTGTAGATGCCATAAGAATTATTTTCTTAATCAGATGTCTTTAGTTTCATCTTTCATGTAACCACTTCTTACTACAGAAGAAACAATGAGTTTCTAGTTTTAATAGCTTATGGGATTGTCCATTACTAAAGACGTGTATAAAATAGTAGGCTAGAATCCTGAATCCGATGTGAAATATTAACCTGTCTGCTAAGAGGGCTAACTATCTGAGATACCAGAAATATCCCAAAGTTGGCTAGGATGAATGATTGTTAGAAGGATAATCCCAAGAAACTCGGTGCAGTTTAGTACTACGTATCGCCATTTCAAAAAATAATACCACAGTATTGCTTCCTTAGAGGTGTTTTTTAATACTTATAAAGTAGGAACCATTGACATATCTTCTTCCGCTTTTATGGCTGTAGCTCTCAATCGTTAATGCAAATAATCCTGTTCTTTAAGGATATATGTTTAATTTTACATTATGAAACTTGCAGTTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTGGTGAGACTCTTGGTGTTTTTTTGACTTAGAATTTAGAAACATTCGATGTTGTTTCATTGTATTATGGTTCTTAGGTAGGTGGTAGCGACATTATGTGCATACAACATTCTGTCTTCTTCTGATCACTAATTTAAAGTGGCTCTGATTTTTCTTGCTGAAGGCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTAAGATGAAGTGATTACATCTGTTGATTTTAGTATTTGTGTAAATAGCATTCTTTCTAGTGCAGTCATTTCATTAGCTCACTTTGTGGTTTTGCTGTTAGGTTTCCCCCGTATTATCTGAAGGGAA</genome_strand>
        <mrna_strand>AGCCATCACTTCCATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTG................................................................................................................................................................GCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTAAGATGAA...........................................................................................GTTTCCCCCGTATTATCTGAAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245395" ref_strand="+" ref_description="SGN-E245395 [cLEF-53-B2]">
      <seq>attcatcttcaatcttcaaatgaagcttttttaattcaagaggggactcatgctagcactaaaggccctcttaattctgaaaaaagatatcttttttacaccccacataccagaaaaatagtgaagagtttcacaagatagcttagcttaaagctatggaggctgctggaagaaaccttctttcttcaccaccaactttttctcagaaaacccaactcaggaattgttcttcttcagttctgatgcttcatgagcatgctgctcctgtgctttcttcagtgccccatacttatttgggtcgatatgttcctgcatcagctatcggtccggagcagcattttgagaatcggctgcaattgcacctagtaaaggaagagaaaacatcctctgcaacaatagataggaggcttgtggaagctgcatcctcagaattggaagagaatgatgctgttgattcagagcaaaatataaatgctttgcaagtgcagctacttcattggcctggtccatcatattcgtttcccccgtattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="40109" stop="43559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40409" g_stop="40645" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40646" i_stop="42817" i_length="2172">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42818" g_stop="42969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="389" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42970" i_stop="43129" i_length="160">
            <donor d_prob="0.741" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43130" g_stop="43257" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="517" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="43358" i_length="101">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43359" g_stop="43376" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="535" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E245395" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40409" e_stop="40645"/>
          <exon e_start="42818" e_stop="42969"/>
          <exon e_start="43130" e_stop="43257"/>
          <exon e_start="43359" e_stop="43376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAGGTGAATTGTTGAATTTTGCCCAAATGGGATATAATAGAACAGTGAGGATTCATGTAGCTGAATTTTAACTAGTTTGGATGAGGGTAATTGTTGTTTTATCAATGCATTTCTGTATTTATGGTTCTTCTAGTGTAGTAGCATCCCATTTTATTGATATTTGTGGCTTTGGTTTTGTAAAGTTAATGCCCTTAGTGAGCACCCAAGGTGTGGCCTGAAGTGAGTTGAGAATGATGATGTCTTAGGTTCAACTTCCAATTAAGACAAAAAAAAACACTAGATGATTACTTACCATATGCCGTAGCTGGTGGGAGGTGGCAGGTAAAAAAGTTGATGGCTTTAGTGAAATGAGGCGCCACAGTTGCTGAATTAGCTATTTAATGTGCTTTCTAGTTATGAGGATTCATGTAACCCAATTCAACTAGTTTTGGTTGAAGAGTAGTTGTTGTTGTACATGCGTGGAATCCCAATGTTTTTGCTTTGTTTGGTTATTCTAGCATTCCCATTTATCAATATTTGTGGCTTTAGTTTTATAAAGTTAATACCTTAGTGTTGAATTTTTGGAATGGACCTTGTCCAAATGGAGCAGAAATGAAGAATGGATAAAGAGGATTCATGTAGCCGAACCCAGCTAATAAATTGAAGGGTAATTGTTGTTGTAAATGTGTTCAAATTCTCATTGTTTTTCCTTCTTGTTCTTCTAACATTCCCATTTATCAATATTTGTAGTTTTAGTTTTTTAAAGTTAATGCCTTTAGTGAAATGTGTTGAATTATTGGAATGAACTTGTCCAAATGGAGAAGAAATGAAGAATGGATAATGACAATTCATTTAGCCAAATCCAACTAGATTAAATTGAAGCATGATTATTGTTGTAAATGCGTTGAAGTCCCGTTGGTTTTGCCTTCTTGATTTTTCTAGCATTCCCAATCATCGATATTTGCAACTTTAGTTTTATTATGTTAATGTGTTTTATATTTTGAAATGAAACTTGTTCAAATGGAGAAGGAAAGCAGAACAGGTAGTGAGGATTCATATAGCTGAATTCTGTTAGTTTAGATTGAAGCATAATTGTTGTTGTAAATGTTGAATTCCCACTGTTTTTGGCTTGGTTTTTCTAGCAGTCCAGTTATACATGTTTGAAACTTTAGTTTTATAAAGTTAATGCCTTAAGTGAAATGTGGCATTTACTTGATTTAATGTGCTTCTAGATCACTTCATTGTTATGATATTGATGCTAGATTGTTGCTTACTCAGTTGATAGAAAAGACCATTAATTCTATATTAAGTTATCAGTGTTGGTGGAAGACTGTTGTCTCATTTTATGGTCTTGGGCAATCCTTGACTCATGAGCTAGCTTTTTGAGTTGAGTTATATACATGCATTTTTGAATTATCTTAAAGGTTTTTCTTACCGGGATTCGATTATGCTGTTCTGTTAACAAAATGTTTCCATCTCCCACTATATTTCTATTCTCTCCTTATCATTATTTTATCAGAATGATAGAGAAGTGTCATTATTTGGTCAAAAGTCACACATTCTTTTGTGTTATGCTATGATGGTCAGACTATCCTAGTCTTTTACACAATATGATGACCGTCACCAACCACAGATTGAAGGTTCAATATTGAAATGGTCGATAATAGACATAAGAATTTAAGTATATTTAACTAAAATTGTTCTTCTTTAGGATTGATAATTGTAGATGCCATAAGAATTATTTTCTTAATCAGATGTCTTTAGTTTCATCTTTCATGTAACCACTTCTTACTACAGAAGAAACAATGAGTTTCTAGTTTTAATAGCTTATGGGATTGTCCATTACTAAAGACGTGTATAAAATAGTAGGCTAGAATCCTGAATCCGATGTGAAATATTAACCTGTCTGCTAAGAGGGCTAACTATCTGAGATACCAGAAATATCCCAAAGTTGGCTAGGATGAATGATTGTTAGAAGGATAATCCCAAGAAACTCGGTGCAGTTTAGTACTACGTATCGCCATTTCAAAAAATAATACCACAGTATTGCTTCCTTAGAGGTGTTTTTTAATACTTATAAAGTAGGAACCATTGACATATCTTCTTCCGCTTTTATGGCTGTAGCTCTCAATCGTTAATGCAAATAATCCTGTTCTTTAAGGATATATGTTTAATTTTACATTATGAAACTTGCAGTTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTGGTGAGACTCTTGGTGTTTTTTTGACTTAGAATTTAGAAACATTCGATGTTGTTTCATTGTATTATGGTTCTTAGGTAGGTGGTAGCGACATTATGTGCATACAACATTCTGTCTTCTTCTGATCACTAATTTAAAGTGGCTCTGATTTTTCTTGCTGAAGGCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTAAGATGAAGTGATTACATCTGTTGATTTTAGTATTTGTGTAAATAGCATTCTTTCTAGTGCAGTCATTTCATTAGCTCACTTTGTGGTTTTGCTGTTAGGTTTCCCCCGTATTATCT</genome_strand>
        <mrna_strand>ATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAGGGGACTCATGCTAGCACTAAAGGCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCTCT................................................................................................................................................................GCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTC.....................................................................................................GTTTCCCCCGTATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245365" ref_strand="+" ref_description="SGN-E245365 [cLEF-53-B14]">
      <seq>attcatcttcaatcttcaaatgaagcttttttaattcaagagggtactcatgctagcactaaaacccctcttaattctgaaaaaagatatcttttttacaccccacataccagaaaaatagtgaagagtttcacaagatagcttagcttaaagctatggaggctgctggaagaaaccttctttcttcaccaccaactttttctcagaaaacccaactcaggaattgttcttcttcagttctgatgcttcatgagcatgctgctcctgtgctttcttcagtgccccatacttatttgggtcgatatgttcctgcatcagctatcggtccggagcagcattttgagaatcggctgcaattgcacctagtaaaggaagagaaaacatccctggcaacaatagataggaggcttggggaagctgcatcctcagaattggaagagaatgatgctgttgattcagagcaaaatataaatgctttgcaagtgcagctacttcattggcctggtccatcatattcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="40109" stop="43559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40409" g_stop="40645" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40646" i_stop="42817" i_length="2172">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42818" g_stop="42969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="389" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42970" i_stop="43129" i_length="160">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43130" g_stop="43257" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="517" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E245365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40409" e_stop="40645"/>
          <exon e_start="42818" e_stop="42969"/>
          <exon e_start="43130" e_stop="43257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAGGTGAATTGTTGAATTTTGCCCAAATGGGATATAATAGAACAGTGAGGATTCATGTAGCTGAATTTTAACTAGTTTGGATGAGGGTAATTGTTGTTTTATCAATGCATTTCTGTATTTATGGTTCTTCTAGTGTAGTAGCATCCCATTTTATTGATATTTGTGGCTTTGGTTTTGTAAAGTTAATGCCCTTAGTGAGCACCCAAGGTGTGGCCTGAAGTGAGTTGAGAATGATGATGTCTTAGGTTCAACTTCCAATTAAGACAAAAAAAAACACTAGATGATTACTTACCATATGCCGTAGCTGGTGGGAGGTGGCAGGTAAAAAAGTTGATGGCTTTAGTGAAATGAGGCGCCACAGTTGCTGAATTAGCTATTTAATGTGCTTTCTAGTTATGAGGATTCATGTAACCCAATTCAACTAGTTTTGGTTGAAGAGTAGTTGTTGTTGTACATGCGTGGAATCCCAATGTTTTTGCTTTGTTTGGTTATTCTAGCATTCCCATTTATCAATATTTGTGGCTTTAGTTTTATAAAGTTAATACCTTAGTGTTGAATTTTTGGAATGGACCTTGTCCAAATGGAGCAGAAATGAAGAATGGATAAAGAGGATTCATGTAGCCGAACCCAGCTAATAAATTGAAGGGTAATTGTTGTTGTAAATGTGTTCAAATTCTCATTGTTTTTCCTTCTTGTTCTTCTAACATTCCCATTTATCAATATTTGTAGTTTTAGTTTTTTAAAGTTAATGCCTTTAGTGAAATGTGTTGAATTATTGGAATGAACTTGTCCAAATGGAGAAGAAATGAAGAATGGATAATGACAATTCATTTAGCCAAATCCAACTAGATTAAATTGAAGCATGATTATTGTTGTAAATGCGTTGAAGTCCCGTTGGTTTTGCCTTCTTGATTTTTCTAGCATTCCCAATCATCGATATTTGCAACTTTAGTTTTATTATGTTAATGTGTTTTATATTTTGAAATGAAACTTGTTCAAATGGAGAAGGAAAGCAGAACAGGTAGTGAGGATTCATATAGCTGAATTCTGTTAGTTTAGATTGAAGCATAATTGTTGTTGTAAATGTTGAATTCCCACTGTTTTTGGCTTGGTTTTTCTAGCAGTCCAGTTATACATGTTTGAAACTTTAGTTTTATAAAGTTAATGCCTTAAGTGAAATGTGGCATTTACTTGATTTAATGTGCTTCTAGATCACTTCATTGTTATGATATTGATGCTAGATTGTTGCTTACTCAGTTGATAGAAAAGACCATTAATTCTATATTAAGTTATCAGTGTTGGTGGAAGACTGTTGTCTCATTTTATGGTCTTGGGCAATCCTTGACTCATGAGCTAGCTTTTTGAGTTGAGTTATATACATGCATTTTTGAATTATCTTAAAGGTTTTTCTTACCGGGATTCGATTATGCTGTTCTGTTAACAAAATGTTTCCATCTCCCACTATATTTCTATTCTCTCCTTATCATTATTTTATCAGAATGATAGAGAAGTGTCATTATTTGGTCAAAAGTCACACATTCTTTTGTGTTATGCTATGATGGTCAGACTATCCTAGTCTTTTACACAATATGATGACCGTCACCAACCACAGATTGAAGGTTCAATATTGAAATGGTCGATAATAGACATAAGAATTTAAGTATATTTAACTAAAATTGTTCTTCTTTAGGATTGATAATTGTAGATGCCATAAGAATTATTTTCTTAATCAGATGTCTTTAGTTTCATCTTTCATGTAACCACTTCTTACTACAGAAGAAACAATGAGTTTCTAGTTTTAATAGCTTATGGGATTGTCCATTACTAAAGACGTGTATAAAATAGTAGGCTAGAATCCTGAATCCGATGTGAAATATTAACCTGTCTGCTAAGAGGGCTAACTATCTGAGATACCAGAAATATCCCAAAGTTGGCTAGGATGAATGATTGTTAGAAGGATAATCCCAAGAAACTCGGTGCAGTTTAGTACTACGTATCGCCATTTCAAAAAATAATACCACAGTATTGCTTCCTTAGAGGTGTTTTTTAATACTTATAAAGTAGGAACCATTGACATATCTTCTTCCGCTTTTATGGCTGTAGCTCTCAATCGTTAATGCAAATAATCCTGTTCTTTAAGGATATATGTTTAATTTTACATTATGAAACTTGCAGTTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTGGTGAGACTCTTGGTGTTTTTTTGACTTAGAATTTAGAAACATTCGATGTTGTTTCATTGTATTATGGTTCTTAGGTAGGTGGTAGCGACATTATGTGCATACAACATTCTGTCTTCTTCTGATCACTAATTTAAAGTGGCTCTGATTTTTCTTGCTGAAGGCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTC</genome_strand>
        <mrna_strand>ATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAGGGTACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTG................................................................................................................................................................GCAACAATAGATAGGAGGCTTGGGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330459" ref_strand="+" ref_description="SGN-E330459 [cTOD-4-L11]">
      <seq>agaattggaagagaatgatgctgttgattcagagcaaaatataaatgctttgcaagtgcagctacttcattggcctggtccatcatattcgtttcccccgtattatctgaagggaaaaggaccattatctccaaataaggaacctcttcacagtaagggagataaattaatgaactttgaaccacacagtgtggttgctcttgccagaaaagctttgttggcatcaaaagaggcagctttattagctgaagactccaaattacttgatgattctcattttccaaagtatgttcctttgtccgtcttgataatatccttgtttattttcacacctgctagtagtattagtattattttcagtatttttattattttactatttccgtatttctcattcttaagttttctattgctacttgctgtctcttatgcctctattttcttactatcgngtttttgatactgctcatgtcttcataaatgttgtgtttttgcattctttgagctgagggtctctctacgtgacaaggtaggggtaagtttcctatccacgcatttggttgatgataaactgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="42868" stop="44255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43168" g_stop="43257" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43258" i_stop="43358" i_length="101">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43359" g_stop="43808" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="540" r_length="450" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43809" i_stop="43917" i_length="109">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43918" g_stop="43955" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="578" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E330459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43168" e_stop="43257"/>
          <exon e_start="43359" e_stop="43808"/>
          <exon e_start="43918" e_stop="43955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTAAGATGAAGTGATTACATCTGTTGATTTTAGTATTTGTGTAAATAGCATTCTTTCTAGTGCAGTCATTTCATTAGCTCACTTTGTGGTTTTGCTGTTAGGTTTCCCCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCAAATAAGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAAGTATGTTCCTTTGTCCGTCTTGATAATATCCTTGTTTATTTTCACACCTGCTAGTAGTATTAGTATTATTTTCAGTATTTTTATTATTTTACTATTTCCGTATTTCTCATTCTTAAGTTTTCTATTGCTACTTGCTGTCTCTTATGCCTCTATTTTCTTACTATCGTGTTTTTGATACTGCTCATGTCTTCATAAATGTTGTGTTTTTGCATTCTTTGAGCTGAGGGTCTCTCTACGTGACAAGGTAGGGGTAAGGTCCATACACTCTACCCTCCCCGGATCCTGCTTGTGTTTTTGCTTATGTTTTCATTTTGACAGTTATCTTCAATCTTCATAACTTATCTCCTCTCTGATTGATTTTCAGTTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAG</genome_strand>
        <mrna_strand>AGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTC.....................................................................................................GTTTCCCCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCAAATAAGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAAGTATGTTCCTTTGTCCGTCTTGATAATATCCTTGTTTATTTTCACACCTGCTAGTAGTATTAGTATTATTTTCAGTATTTTTATTATTTTACTATTTCCGTATTTCTCATTCTTAAGTTTTCTATTGCTACTTGCTGTCTCTTATGCCTCTATTTTCTTACTATCGNGTTTTTGATACTGCTCATGTCTTCATAAATGTTGTGTTTTTGCATTCTTTGAGCTGAGGGTCTCTCTACGTGACAAGGTAGGGGTAAG.............................................................................................................TTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242891" ref_strand="+" ref_description="SGN-E242891 [cLED-31-A14]">
      <seq>aggaacctcttcacagtaagggagataaattaatgaactttgaaccacacagtgtgggtgctcttgccagaaaagctttgttggcatcaaaagaggcagctttattagctgaagactccaaattacttgatgattctcattttccaaatttcctatccacgcatttggttgatgataaactgaaagagcaacgtacagtaagatcaacacgttttatagagaggcagtctagaaaaaggggagctccaaagccaatacaagaagttcaggagacaaataatcgttcaggcaggccagatgtgcggagaaaagtgaacgaatctattgatctaaatgatcctcttcgaatgttcctatggggtcccgaaactaaacaactcttaaccgccaaagaggagtctgaattgattgtcaagatacagatctccatgaaattacaagaagtaaagcatcagcttcagattcagtttgctcgtgaaccaacatcgcttgagtgggctgaagctgcaaggattacttctcgagaattgaaatcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="43106" stop="44698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43406" g_stop="43553" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43554" i_stop="43917" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43918" g_stop="44191" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="422" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44192" i_stop="44279" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44280" g_stop="44398" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="541" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E242891" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43406" e_stop="43553"/>
          <exon e_start="43918" e_stop="44191"/>
          <exon e_start="44280" e_stop="44398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAAGTATGTTCCTTTGTCCGTCTTGATAATATCCTTGTTTATTTTCACACCTGCTAGTAGTATTAGTATTATTTTCAGTATTTTTATTATTTTACTATTTCCGTATTTCTCATTCTTAAGTTTTCTATTGCTACTTGCTGTCTCTTATGCCTCTATTTTCTTACTATCGTGTTTTTGATACTGCTCATGTCTTCATAAATGTTGTGTTTTTGCATTCTTTGAGCTGAGGGTCTCTCTACGTGACAAGGTAGGGGTAAGGTCCATACACTCTACCCTCCCCGGATCCTGCTTGTGTTTTTGCTTATGTTTTCATTTTGACAGTTATCTTCAATCTTCATAACTTATCTCCTCTCTGATTGATTTTCAGTTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAGAGCAACGTACAGTAAGATCAACACGTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACAAGAAGTTCAGGAGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGAATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACTCTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAGGTATTTTGCTCTTCTTGTCTCTGTTCCTGTAGAAATTGTTTTTTCACAAAGAAAAAAGGAGTTAAATCAATGTCCGGTCATGTTTCAGATCTCCATGAAATTACAAGAAGTAAAGCATCAGCTTCAGATTCAGTTTGCTCGTGAACCAACATCGCTTGAGTGGGCTGAAGCTGCAGGGATTACTTCTCGAGAATTGAAATCACAACT</genome_strand>
        <mrna_strand>AGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGGTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAA............................................................................................................................................................................................................................................................................................................................................................................TTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAGAGCAACGTACAGTAAGATCAACACGTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACAAGAAGTTCAGGAGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGAATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACTCTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAG........................................................................................ATCTCCATGAAATTACAAGAAGTAAAGCATCAGCTTCAGATTCAGTTTGCTCGTGAACCAACATCGCTTGAGTGGGCTGAAGCTGCAAGGATTACTTCTCGAGAATTGAAATCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734211" ref_strand="+" ref_description="SGN-E734211 [LB12AC10]">
      <seq>caacagtcagtgtggtcagatcaagatactactttccaggaaattactgctgacaatgcaattgaagcaccagaactgagtgtatcaaaacaacttatgaggcgtcacatacgcggcctcctaaatgtcctgagtccaaaggaaaggaaaataatccgacttagatttggcattggagatggcaaaccaaagtctctatccgaaataggcgctgtttttggactgtcaaaggaacgagtacgacaactagagacccgagctctatacaagctaaagcagaatcttaacaagcatggcctcgatgcatattccgatttgctcttttaaatcacagtctcttcaatttacataaaacgactcgagttgttactgtggctgatgtagcagatgttactttgaaatcaacagtagatacaagttgctcacatccttgtaagtatggagcaaacattcaaattccagcggagacaaaaacaccaggtgattcttcccatctatcttagccttgatcgacaaagttgcatgtcatatacctattgctgatgagaggtgataggtatcccgtagagtcagtcgaggtgcgtgaaagctgacctggatgcccggaaaaaaatatggggtaaatgtttagctgtttttagttttgctttacaaaatacttgtgatgtgaacgtgttattcctgttcttaccttttttatcttgtaaagtatcaagttgtaaaattttttttttttttttcatccaaacttttatttaaatgaaagttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="45314" stop="49967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45614" g_stop="45652" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45653" i_stop="46333" i_length="681">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46334" g_stop="47030" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="735" r_length="696" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E734211" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45614" e_stop="45652"/>
          <exon e_start="46334" e_stop="47030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTCAGTGTGGTCAGATCAAGATACTACTTTCCAGGTGATGATTCGTTGCACCACTTCATGCTTTTTGAGGAACTTACTAAGTAAATCACAATCAGGATGATTTCTTTTCGTTTGTCCAAGCCTTTTTTTGACTTGCATGTAATACTGGTAGTCCAAGGGGATATAAAATCTGGTAGAAAATAGGTTTATTGCCAGAGGACTTAATAATTAGCAAGTGTTTTCCGTGTTTATGACTTTTCTTTGCTTTCTGCAACCCTTTCTTAGAAACTCTTCCCTAGAACTACTCCGCGCTTTTGACTATGTGCTATTGAATGTTATCTTGCTTTCCTGCGAGGTAGGATAGGTGGGGGTATTCGGGTACCTACTCTCTTACCAGTAGTATTAGCACTATTCTCGTTGTTTATTGTTTTTCTATTGTTGTTATCATCTGTGATTTCTATGCTTCGGTTATTGCACTAGTTCATGTTGTTATTGTTCTTTCTCTGTAGCGCTATATTTTTAGTTGCTATTACTGCATTTCATTTCTGCATTCTCCTTAGTAATTACTTTGAGATGCTTTAGCCTTTACTTGAGTAGAGGGTCTATTGGAAATAACTTCTCTATCTCTAGTACACTTTAACTTTTCCCAAACCCCACTCGGATACTCCGCTTGTCAGATTACTTCGATCATGTTTTGGCGATTGCTAAAGAGAGGATATCATTTTTCTCAATCCAGGAAATTACTGCTGACAATGCAATTGAAGCACCAGAACTGAGTGTATCAAAACAACTTATGAGGCGTCACATACGCGGCCTCCTAAATGTCCTGAGTCCAAAGGAAAGGAAAATAATCCGACTTAGATTTGGCATTGGAGATGGCAAACCAAAGTCTCTATCCGAAATAGGCGCTGTTTTTGGACTGTCAAAGGAACGAGTACGACAACTAGAGACCCGAGCACTATACAAGCTAAAGCAGAATCTTAACAAGCATGGCCTCGATGCATATTCCGATTTGCTCTTTTAAATCACAGTCTCTTCAATTTACATAAAACGACTCGAGTTGTTACTGTGGCTGATGTAGCAGATGTTACTTTGAAATCAACAGTAGATACAAGTTGCTCACATCCTTGTAAGTATGGAGCAAACATTCAAATTCCAGCGGAGACAAAAACACCAGGTGATTCTTCCCATCTATCTTAGCCTTGATCGACAAAGTTGCATGTCATATACCTATTGCTGATGAGAGGTGATAGGTATCCCGTAGAGTCAGTCGAGGTGCGTGAAAGCTGACCTGGACGCCCGGAAAAAAAATATGGGATAAGTGTTTAGCTGTTTTTAGTTTTGCTTTACAAAATACTTGTGATGTGAACATGTTATTCCTGTTCTTACCTTTTTTATCTTGTAAAGTATCAAGTTGTAAATTATTTTTTTTC</genome_strand>
        <mrna_strand>CAACAGTCAGTGTGGTCAGATCAAGATACTACTTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTACTGCTGACAATGCAATTGAAGCACCAGAACTGAGTGTATCAAAACAACTTATGAGGCGTCACATACGCGGCCTCCTAAATGTCCTGAGTCCAAAGGAAAGGAAAATAATCCGACTTAGATTTGGCATTGGAGATGGCAAACCAAAGTCTCTATCCGAAATAGGCGCTGTTTTTGGACTGTCAAAGGAACGAGTACGACAACTAGAGACCCGAGCTCTATACAAGCTAAAGCAGAATCTTAACAAGCATGGCCTCGATGCATATTCCGATTTGCTCTTTTAAATCACAGTCTCTTCAATTTACATAAAACGACTCGAGTTGTTACTGTGGCTGATGTAGCAGATGTTACTTTGAAATCAACAGTAGATACAAGTTGCTCACATCCTTGTAAGTATGGAGCAAACATTCAAATTCCAGCGGAGACAAAAACACCAGGTGATTCTTCCCATCTATCTTAGCCTTGATCGACAAAGTTGCATGTCATATACCTATTGCTGATGAGAGGTGATAGGTATCCCGTAGAGTCAGTCGAGGTGCGTGAAAGCTGACCTGGATGCCCGG-AAAAAAATATGGGGTAAATGTTTAGCTGTTTTTAGTTTTGCTTTACAAAATACTTGTGATGTGAACGTGTTATTCCTGTTCTTACCTTTTTTATCTTGTAAAGTATCAAGTTGTAAAATTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325966" ref_strand="+" ref_description="SGN-E325966 [cTOC-12-J20]">
      <seq>aaaaaagcttcatcctcatgccttggtaattccatgtccatatcaaggtcatataaacccaacaattcatctagccttaaaacttgcttcaaaaggattcattataacttttatcaacacacaatttattcattcccaaataacaaaagcccattcaccttcctcgtcagagccgtcggggctcgaaaatatcttctcaaaaccctgtgaatctgggcttgatatacgttatttaactatttccgatggatttccgttggaattcgatcggaatatgaattcgttgccatttttggaaggtttaataaatgggttttcgaattatgttgataaactagttggggatttagcgaaagaggattgtgttgatccaattaattgtttgattgctgatactttcttcgtttggccatcgattatcgcaaaaaaatatgagattgttcatgtttcattcttcactgagccagctttggtttttgctctctattatcacttggatttgcttgaagaaaatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48182" stop="50254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48482" g_stop="49014" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="49954" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="593" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E325966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48482" e_stop="49014"/>
          <exon e_start="49895" e_stop="49954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACT</genome_strand>
        <mrna_strand>AAAAAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375938" ref_strand="+" ref_description="SGN-E375938 [TUS-40-C10]">
      <seq>aaagcttcatcctcatgccttggtaattccatgtccatatcaaggtcatataaacccaacaattcatctagccttaaaacttgcttcaaaaggattcattataacttttatcaacacacaatttattcattcccaaataacaaaagcccattcaccttcctcgtcagagccgtcggggctcgaaaatatcttctcaaaaccctgtgaatctgggcttgatatacgttatttaactatttccgatggatttccgttggaattcgatcggaatatgaattcgttgccatttttggaaggtttaataaatgggttttcgaattatgttgataaactagttggggatttagcgaaagaggattgtgttgatccaattaattgtttgattgctgatactttcttcgtttggccatcgattatcgcaaaaaaatatgagattgttcatgtttcattcttcactgagccagctttggtttttgctctctattatcacttggatttgcttgaagaaaatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgacttgccatccttgtaccaaaattcggtggtgcaccaattaatctacaaggcatttcaagatgttcgaaaagccgatataataatagccaacactgttcaggagctcgaacctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48185" stop="50369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48485" g_stop="49014" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="50069" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="705" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E375938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48485" e_stop="49014"/>
          <exon e_start="49895" e_stop="50069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAAC</genome_strand>
        <mrna_strand>AAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321194" ref_strand="+" ref_description="SGN-E321194 [cTOB-13-F6]">
      <seq>aaagcttcatcctcatgccttggtaattccatgtccatatcaaggtcatataaacccaacaattcatctagccttaaaacttgcttcaaaaggattcattataacttttatcaacacacaatttattcattcccaaataacaaaagcccattcaccttcctcgtcagagccgtcggggctcgaaaatatcttctcaaaaccctgtgaatctgggcttgatatacgttatttaactatttccgatggatttccgttggaattcgatcggaatatgaattcgttgccatttttggaaggtttaataaatgggttttcgaattatgttgataaactagttggggatttagcgaaagaggattgtgttgatccaattaattgtttgattgctgatactttcttcgattggccatcgattatcgcaaaaaaatatgagattgttcatgtttcattcttcactgagccagctttggtttttgctctctattatcacttggatttgcttgaagaaaatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgacttgccatccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48185" stop="50266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48485" g_stop="49014" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="49966" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="602" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E321194" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48485" e_stop="49014"/>
          <exon e_start="49895" e_stop="49966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGT</genome_strand>
        <mrna_strand>AAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGATTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704569" ref_strand="+" ref_description="SGN-E704569 [FA24CF05]">
      <seq>aatttattcattcccaaataacaaaagcccattcaccttcctcttcagagccgtcggggctcgaaaatatcttctcaaaaccctgtgaatctgggcttgatatacgttatttaactatttccgatggatttccgttggaattcgatcggaatatgaattcgttgccatttttggaaggtttaataaatgggttttcgaattatgttgataaactagttggggatttagcgaaagaggattgtgttgatccaattaattgtttgattgctgatactttcttcgtttggccatcgattatcgcaaaaaaatatgagattgttcatgtttcattcttcactgagccagctttggtttttgctctctattatcacttggatttgcttgaagaaaatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgacttgccatccttgtaccaaaattcggtggtgcaccaattaatctacaaggcatttcaagatgttcgaaaagccgatataataatagccaacactgttcaggagctcgaacctgaaaccatcacatcgattcaagaaaagcacaagttctacgccattggtccaattgtgtccgcgaatttcactgaactaactatttcgagtagcctatggtccgagcacgattgcacccaatggctcgatgccaagcctcgtggttcggtcttatacgtctcgtttgggagtgtggctcttgttaacaaagaggatattcttgaattagctcatgcacttatgcttagggaagtgaatttcatttgggtacttaggtttaaggtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48304" stop="50631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48604" g_stop="49014" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="50331" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="848" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E704569" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48604" e_stop="49014"/>
          <exon e_start="49895" e_stop="50331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAGGTTTAATGTTTTA</genome_strand>
        <mrna_strand>AATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCTTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGCACTTATGCTTAGGGAAGTGAATTTCATTTGGGTACTTAGGTTTAAGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724630" ref_strand="+" ref_description="SGN-E724630 [FC24CG10]">
      <seq>attggcggccaaatcggccgattgattcccaaataacccatcccattcaccttcctcttcagagccgtcggggctcgaaaatatcttctcaaaaccctgtgaatctgggcttgatatacgttatttaactatttccgatggatttccgttggaattcgatcggaatatgaattcgttgccatttttggaaggtttaataaatgggttttcgaattatgttgataaactagttggggatttagcgaaagaggattgtgttgatccaattaattgtttgattgctgatactttcttcgtttggccatcgattatcgcaaaaaaatatgagattgttcatgtttcattcttcactgagccagctttggtttttgctctctattatcacttggatttgcttgaagaaaatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgacttgccatccttgtaccaaaattcggtggtgcaccaattaatctacaaggcatttcaagatgttcgaaaagccgatataataatagccaacactgttcaggagctcgaacctgaaaccatcacatcgattcaagaaaagcacaagttctacgccattggtccaattgtgtccgcgaatttcactgaactaactatttcgagtagcctatggtccgagcacgattgcacccaatggctcgatgccaagcctcgtggttcggtcttatacgtctcgtttgggagtgtggctcttgttaacaaagaggatattcttgaattagctcatgcacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48329" stop="50585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48609" g_stop="49014" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="425" r_length="405" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="50285" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="816" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E724630" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48609" e_stop="49014"/>
          <exon e_start="49895" e_stop="50285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTAT</genome_strand>
        <mrna_strand>ATTGATTCCCAAATAAC-CCATCCCATTCACCTTCCTCTTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGCACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710342" ref_strand="+" ref_description="SGN-E710342 [FA55AE10]">
      <seq>acaatatggtcactctggctctcatgaaaataggaaagatattgttgattatattcctggagttaaatcaatcaaatcaagtgacttgccatccttgtaccaaaattcggtggtgcaccaattaatctacaaggcatttcaagatgttcgaaaagccgatataataatagccaacactgttcaggagctcgaacctgaaaccatcacatcgattcaagaaaagcacaagttctacgccattggtccaattgtgtccgcgaatttcactgaactaactatttcgagtagcctatggtccgagcacgattgcacccaatggctcgatgccaagcctcgtggttcggtcttatacgtctcgtttgggagtgtggctcttgttaacaaagaggatattcttgaattacctcatgcacttatgcttagtgaagtgaatttcatttgggtacttaagtttaatgttttaggtcaagacgaaaatgatattttgcccgttggatataaacaaaaagtgaaggatcgagggttgattgtgccatggtgcaaccaacccaaggtgatttcacattcagcagttggaggtttcttgagtccctgtggatggaattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="48691" stop="50777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48989" g_stop="49014" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49895" g_stop="50477" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="609" r_length="583" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E710342" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48989" e_stop="49014"/>
          <exon e_start="49895" e_stop="50477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGTCACTCTGGCTCTCATGGTGAGTTTTTCTTTTTTGCTCTTTTGACTCGAAAGATTTATCAGAAACAATCTCACATACTATTAGATATAAGAATATTGCTTATTTTTAGCTTAGCATCATAAAATTCAAAATGTTTATTTATATATCAAAAAGAAAAAAAAGTCAAAAATATAGCTTGAATTATCATAAATGGTATATAGATATCTATATCATATTTTTGATGCAATCTAAAAACTAGAACATACATATCTATACTGGATCTGGTGATTGAAACTGATACTCCTTCGTTCAAGTGGAAAGGCATAGTTTTTGTCAAGAATGAGCAACTTTAAATATATATCTTTTAGATGTAAAATTTGATATATATATATATACAGAACGTAATTTTTCTGACGAAGGGTGTCCACCTTGCATCACTGTATATTCTTTATATTAACAGACATACACGAGTTATAATTTATCCATCAAGTTGATATTTATAAAATATCGGATCAACAGATAAGATTGTGCTAGGTGTCTCTATGATGTCCCTATATATTTAGTGTTTCGCTAGAGTGAGTGACATATATACTTTAGTTTTTGAACGGCAGCGCCATTAATGTCTCAAAAATATGACAGAGATATCTGCGTATCATTTATTAAAAAAAAGGATTTTTTTTTTTTTTTGTATCTTCGTCTTCTTACATAATCTGTTATACTGATTAGAAAAGAATGGTAGTCTCTTCTATTTATTTGTGACATATGATCTCCATATTTTTAATTAGCAACTTCCATGAATTAGTAAAATTAAATACTTTTGTATGTACAGTGTCACTGAGTGATGCCATCTCACTAATCTTGTTGTTAGAATATAGAAATATATTAAACTGATAATTTTCTTAAAATCATTTTTTAACAGAAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAGGTTTAATGTTTTAGGTCAAGACGAAAATGATATTTTGCCCGTTGGATATAAAGAAAAAGTGAAGGATCGAGGGTTGATCGTGCCATGGTGCAACCAACCGAGGGTGATTTCACATTCAGCAGTTGGAGGTTTCTTGAGTCACTGTGGATGGAATTCTGT</genome_strand>
        <mrna_strand>ACAATATGGTCACTCTGGCTCTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTACCTCATGCACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAAGTTTAATGTTTTAGGTCAAGACGAAAATGATATTTTGCCCGTTGGATATAAACAAAAAGTGAAGGATCGAGGGTTGATTGTGCCATGGTGCAACCAACCCAAGGTGATTTCACATTCAGCAGTTGGAGGTTTCTTGAGTCCCTGTGGATGGAATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354990" ref_strand="+" ref_description="SGN-E354990 [cTOS-19-H5]">
      <seq>tcaagaaacctccaactgctgaatgtgaaatcaccctcggttggttgcaccatggcacgatcaaccctcgatccttcactttttctttatatccaacgggcaaaatatcattttcgtcttgacctaaaacattaaacctaagtacccaaatgaaattcacttcactaagcataagtccatgagctaattcaagaatatcctctttgttaacaagagccacactcccaaacgagacgtataagaccgaaccacgaggcttggcatcgagccattgggtgcaatcgtgctcggaccataggctactcgaaatagttagttcagtgaaattcgcggacacaattggaccaatggcgtagaacttgtgcttttcttgaatcgatgtgatggtttcaggttcgagctcctgaacagtgttggctattattatatcggcttttcgaacatcttgaaatgccttgtagattaattggtgcaccaccgaattttggtacaaggatggcaagtcacttgatttgattgatttaactccaggaatataatcaacaatatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="50755" stop="49602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50455" g_stop="49902" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E354990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50455" e_stop="49902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAACCTCCAACTGCTGAATGTGAAATCACCCTCGGTTGGTTGCACCATGGCACGATCAACCCTCGATCCTTCACTTTTTCTTTATATCCAACGGGCAAAATATCATTTTCGTCTTGACCTAAAACATTAAACCTAAGTACCCAAATGAAATTCACTTCACTAAGCATAAGTCCATGAGCTAATTCAAGAATATCCTCTTTGTTAACAAGAGCCACACTCCCAAACGAGACGTATAAGACCGAACCACGAGGCTTGGCATCGAGCCATTGGGTGCAATCGTGCTCGGACCATAGGCTACTCGAAATAGTTAGTTCAGTGAAATTCGCGGACACAATTGGACCAATGGCGTAGAACTTGTGCTTTTCTTGAATCGATGTGATGGTTTCAGGTTCGAGCTCCTGAACAGTGTTGGCTATTATTATATCGGCTTTTCGAACATCTTGAAATGCCTTGTAGATTAATTGGTGCACCACCGAATTTTGGTACAAGGATGGCAAGTCACTTGATTTGATTGATTTAACTCCAGGAATATAATCAACAATATCTTTC</genome_strand>
        <mrna_strand>TCAAGAAACCTCCAACTGCTGAATGTGAAATCACCCTCGGTTGGTTGCACCATGGCACGATCAACCCTCGATCCTTCACTTTTTCTTTATATCCAACGGGCAAAATATCATTTTCGTCTTGACCTAAAACATTAAACCTAAGTACCCAAATGAAATTCACTTCACTAAGCATAAGTCCATGAGCTAATTCAAGAATATCCTCTTTGTTAACAAGAGCCACACTCCCAAACGAGACGTATAAGACCGAACCACGAGGCTTGGCATCGAGCCATTGGGTGCAATCGTGCTCGGACCATAGGCTACTCGAAATAGTTAGTTCAGTGAAATTCGCGGACACAATTGGACCAATGGCGTAGAACTTGTGCTTTTCTTGAATCGATGTGATGGTTTCAGGTTCGAGCTCCTGAACAGTGTTGGCTATTATTATATCGGCTTTTCGAACATCTTGAAATGCCTTGTAGATTAATTGGTGCACCACCGAATTTTGGTACAAGGATGGCAAGTCACTTGATTTGATTGATTTAACTCCAGGAATATAATCAACAATATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375937" ref_strand="+" ref_description="SGN-E375937 [TUS-40-C10](-)">
      <seq>gagcacgattgcacccaatggctcgatgccaagcctcgtggttcggtcttatacgtctcgtttgggagtgtggctcttgttaacaaagaggatattcttgaattagctcatggacttatgcttagtgaagtgaatttcatttgggtacttaggtttaatgttttaggtcaagacgaaaatgatattttgcccgttggatataaagaaaaagtgaaggatcgagggttgatcgtgccatggtgcaaccaaccgagggtgatttcacattcagcagttggaggtttcttgagtcactgtggatggaattctgtagtggagagcatttggtgtggggtgccgttgatttgttctccgcttgtcaccgatcaactcgctaatcggaaattagtggtttatgattggaaagttggaattaatcttcgtgacgaggaatcaatcacgagagaagaagtacgcagtaagattaaatatttgatgaacgaagagacttcgaataatttaaggaagaatgttgcacaagtgaaagagacatttcataatacattagctacgaatggatcatcaaatgtttattttaataagtttgttgaagagttgaagataaagattagtttagcttgagatgatctaatcttaaaccactgtattcacgtgaattcaataaattttatttaagtagtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="49867" stop="51150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50167" g_stop="50849" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="693"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E375937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50167" e_stop="50849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAGGTTTAATGTTTTAGGTCAAGACGAAAATGATATTTTGCCCGTTGGATATAAAGAAAAAGTGAAGGATCGAGGGTTGATCGTGCCATGGTGCAACCAACCGAGGGTGATTTCACATTCAGCAGTTGGAGGTTTCTTGAGTCACTGTGGATGGAATTCTGTAGTGGAGAGCATTTGGTGTGGGGTGCCGTTGATTTGTTCTCCGCTTGTCACCGATCAACTCGCTAATCGGAAATTAGTGGTTTATGATTGGAAAGTTGGAATTAATCTTCGTGACGAGGAATCAATCACGAGAGAAGAAGTACGCAGTAAGATTAAATATTTGATGAACGAAGAGACTTCGAATAATTTAAGGAAGAATGTTGCACAAGTGAAAGAGACATTTCATAATACATTAGCTACGAATGGATCATCAAATGTTTATTTTAATAAGTTTGTTGAAGAGTTGAAGATAAAGATTAGTTTAGCTTGAGATGATCTAATCTTAAACCACTGTATTCACGTGAATTCAATAAATTTTATTTAAGTAGTGTA</genome_strand>
        <mrna_strand>GAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAGGTTTAATGTTTTAGGTCAAGACGAAAATGATATTTTGCCCGTTGGATATAAAGAAAAAGTGAAGGATCGAGGGTTGATCGTGCCATGGTGCAACCAACCGAGGGTGATTTCACATTCAGCAGTTGGAGGTTTCTTGAGTCACTGTGGATGGAATTCTGTAGTGGAGAGCATTTGGTGTGGGGTGCCGTTGATTTGTTCTCCGCTTGTCACCGATCAACTCGCTAATCGGAAATTAGTGGTTTATGATTGGAAAGTTGGAATTAATCTTCGTGACGAGGAATCAATCACGAGAGAAGAAGTACGCAGTAAGATTAAATATTTGATGAACGAAGAGACTTCGAATAATTTAAGGAAGAATGTTGCACAAGTGAAAGAGACATTTCATAATACATTAGCTACGAATGGATCATCAAATGTTTATTTTAATAAGTTTGTTGAAGAGTTGAAGATAAAGATTAGTTTAGCTTGAGATGATCTAATCTTAAACCACTGTATTCACGTGAATTCAATAAATTTTATTTAAGTAGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549549" ref_strand="+" ref_description="SGN-E549549 [TUS-71-H3]">
      <seq>atcatcatcatcatcaacaatggcgaatcatcaccaaaaacctcatgctattatgattccatatccatatcaaggtcacattactccttttgtgtatttagctataaaattagcttcacatggtttcacaatcacttttgtaaacactcattatatacattctaagatttccaattcacaatctagagaaaattctcaaatgaaaaacaaagatgatttgtttgctagagctcgtgaatctgggcttgatattcgttatgcaacggtgaatgatgggtttcctttagggtttgataggtcattgaatcatgaccaatttgttgagggtttgttgcacgttttttcagcgcattttgatgaattggttggggatttggtgaaatccgatccgccggtgacgtgtttgatcgctgatacgttttatgtatggccggcgatgatcgccgagaagtataatttggtttatgtttcgttttggacggaacctgctctggtttttaatctgtattatcatatggaattgctcaaaaaaaatggacattttgcttctcaagataaccgaaaggacactatagactacataccaggagttaaagctattgaaccaagagacttgatgtcttatctccaagcaactgatatttggactgtggttcatagggtaatctacaaggcctttacagatattaaaaaggctgatatcatcatttgtaacacagtccaagaacttgaatttgatactctctcagccctaaacaaaaaccagcccacatatgctattggtcccattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="52877" stop="56638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53177" g_stop="53730" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53731" i_stop="56099" i_length="2369">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56100" g_stop="56338" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="793" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E549549" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53177" e_stop="53730"/>
          <exon e_start="56100" e_stop="56338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAATCATCATCAACAATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCACATTACTCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGCTTCACAATCACTTTTGTAAACACTCATTATATACATTCTAAGATTTCCAATTCACAATCTAGAGAAAATTCTCAAATAAAAAACAAAGATGATTTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTATGCAACGGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATTTGTTGAGGGTTTGTTGCACGTTTTTTCAGCGCATTTTGATGAATTGGTTGGGGATTTGGTGAAATCCGATCCGCCGGTGACGTGTTTGATCGCTGATACGTTTTATGTATGGCCGGCGATGATCGCCGAGAAGTATAATTTGGTTTATGTTTCGTTTTGGACGGAACCTGCTCTGGTTTTTAATCTGTATTATCATATGGAATTGCTCAAAAAAAATGGACATTTTGCTTCTCAAGGTTCGTGTTCCCCTTCTCAGTTATCTTCGTTTTATCTTTAGGTCACGAATTCGAGCTAAAAAAGAATTACATTTATTAATATTTGCATTATTATGTTAAGTTGTCTATGTCACATCACTTCGTTTCAGCTTTTACCTTACCTGTGTGAACGTGAAATGCTTTTATGATTATAGAAGTTGATTTTGTCTCAATTTTTGTGACACGACTACTTTCGTCTCGATAATGAAATGATAATTTACTTGGATATAGTATAGCTCTTGGCGATCCATACTACTTTTTAGGAAAAAGTGCCACTTGATATGGAATCGATTATAATATAAATGTATGTATTTAAAAATATATATGTAACTGACTCCCCGTAGAATAAATATCAATCGGAAAGTGAAGTCTCAAAGACAACTAATAGTCTTTGTTTAAAAAATATAATGTATTATCATATTTTCGGTTAGCTTACATCTCGACTAATTCTATAGGATATATATTGCTTCTTTAGCAACAAATATTTTAAACTCTGTTCATAAGCTTGACATATAGGAAAAATGTATAATATTTTTACCCTCATTGAAATTTGAATCTAGAACCTTATGATTCTCGACTCACTTTATTGATCAACAAAGACACAACCAACACTTGTAAATTGGATTGTGACCATGTACCAACATAATTGGTGTAAAATGTTGGTTAGGCCAGTGGGTCTCTCCTTCCTTCTTTTTGTTTTTGTCCTGTTTTAGGTTGTGGGATCCAATGAAAGTTGGTGGTAATAATGGTGGTTAGTTGAGATACCACTTCACTACTAATAACTACTATTTGATTTTCAGAACAAACAACTAATTTTCTAAAAATAGTTTATATCTTAATTAAAACAAAACATGTTTTTGTTTTTTTAATTTTGAAAACATTTATGGTTGATGGTTAAGAGATGCCTACAAAAAAAAAGTTTTTGTATGTAACAAGAGTTTTCACATTATCAGAGAGGGATTAGTCAAATTGGTCTAGTGGTGTCTTTAATTTGATCTTTTGTCTGTTATTGCATGTGGACATTATAATAAAATAGGTGTTCACACTTGGAGATATATCTTAAGAATTAAAAATTAGGATGTTTTTACACTGCACAACAGCTCTACAAAATAATCATAATTACAATCTTTTTATAAGTTTTAACCAGTATACAGTATGTAACTAATGTATAATATGTGTTTTATATTGATTAAGGTCGAAGGTTAGTAGATAGTTGTATGTTGTGTAACTTCTTCTTTCATATAAGTAATAGTAGTATTTACTATCGTAGGCTCTTGTGTGGTGGAATTACACAGAATATGTAATTGTTATATTTCATGTTTTTCTTATCTTTTTGCTATGGCTTCTGCAATTCCGATTTCTTTTTCCTGAGTCGAGGGTCTATCGAAAAAGAAAAAACTTAGCCTGTGCATATTTGGTGGACTAAAGATATTCATTTTACTATTTGAATAGCTGCCTTCTTTGACCTCCTAACAAGGCCTTGACCCCCACTTGGTTGTCACATCTGTATCATATTAGAAAAAAAGGTTTATTAATAAGTTTGTACATGTAATATTTTAAAAACTGGACTACAGGGTTGGAGCATAAATTTTTAATTGAAATTTTTATAAAGGTAGCTATGCTAATCAGTGTTATATTGAGAATCTAGCATTGATTCCTTTACTAACTAATTATTGGTCCTGAGTGGGATTGGTGAGTCTACTTGAAATTATTTTATGTTAGTGATGTGACTTTTCAGCTTCTGAGTAGGCCTCTTTGTCTCAATATGTGCTACAAGTACCTCAACAGACAACAACCCATTATATGTAAAAAATTGTTGTGGGGTCTAAAACTATGGTAATGACTAATGAATCCTATCATACTCATTGCGCTGTGCTTGTATGAACTAGTCTTCCAAATGCCAATGTTAAGATGAGACTTGCCCTTCTTTAGTGGTTCTCGTGCCATCACAATGGCATGACGTTGAAAGAGCAATTGGAACATGTTCCTGGTCAGCTCGTTAGTTTTGCATCTTGATGCTGGTAGGCTCCTTCCTCTTAAACATATAGTAAGATTATTGTGAGTCTAACTAGTCCTATCACATTCCTAGTGTCGTACTTGGATGCACTAGTCTTTCACATGTCTGTGATGAGATGAAAGTTGTCCCTGTTTGATAGTTCTCGTGTCACCACAATGGCATCACATTTAACGAATGACAAGAACCTGCCACTCATCCGGTTGTTGGTAGGCACATTGTGGCATCAAAAGCAAGTCTTTTTCTTGTGCTGCTGTCTGTGAAATCTGTTCTTTCTTTCTAAACATTACGTCTTAATCAGTAGATAATTTGATTAAATTATATTCTTATTTTTCAGATAACCGAAAGGACACTATAGACTACATACCAGGAGTTAAAGCTATTGAACCAAGAGACTTGATGTCTTATCTCCAAGCAACTGAGATTTGGACTGTGGTTCATAGGGTAATCTACAAGGCCTTTACAGATATTAAAAAGGCTGATATCATCATTTGTAACACAGTCCAAGAACTTGAATTTGATACTCTCTCAGCCCTAAACAAAAACCAGCCCACATATGCTATTGGTCCCATTTTC</genome_strand>
        <mrna_strand>ATCATCATCATCATCAACAATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCACATTACTCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGTTTCACAATCACTTTTGTAAACACTCATTATATACATTCTAAGATTTCCAATTCACAATCTAGAGAAAATTCTCAAATGAAAAACAAAGATGATTTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTATGCAACGGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATTTGTTGAGGGTTTGTTGCACGTTTTTTCAGCGCATTTTGATGAATTGGTTGGGGATTTGGTGAAATCCGATCCGCCGGTGACGTGTTTGATCGCTGATACGTTTTATGTATGGCCGGCGATGATCGCCGAGAAGTATAATTTGGTTTATGTTTCGTTTTGGACGGAACCTGCTCTGGTTTTTAATCTGTATTATCATATGGAATTGCTCAAAAAAAATGGACATTTTGCTTCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGAAAGGACACTATAGACTACATACCAGGAGTTAAAGCTATTGAACCAAGAGACTTGATGTCTTATCTCCAAGCAACTGATATTTGGACTGTGGTTCATAGGGTAATCTACAAGGCCTTTACAGATATTAAAAAGGCTGATATCATCATTTGTAACACAGTCCAAGAACTTGAATTTGATACTCTCTCAGCCCTAAACAAAAACCAGCCCACATATGCTATTGGTCCCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360220" ref_strand="+" ref_description="SGN-E360220 [cLPP-14-G14]">
      <seq>catcatcatcatcaacaatggcgaatcatcaccaaaaacctcatgctattatgattccatatccatatcaagggcacattactccttttgtgtatttagctataaaattagcttcacatggtttcacaatcacttttgtaaacactcattatatacattctaagatttccaattcacaatctatagaaaattctcaaatgaaaaacaaagatgatttgtttgctagagctcgtgaatctgggcttgatattcgttatgcaacggtgaatgatgggtttactttagggattgataggtcattgaatcatgaccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="52879" stop="53794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53179" g_stop="53494" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E360220" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53179" e_stop="53494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATCATCATCAACAATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCACATTACTCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGCTTCACAATCACTTTTGTAAACACTCATTATATACATTCTAAGATTTCCAATTCACAATCTAGAGAAAATTCTCAAATAAAAAACAAAGATGATTTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTATGCAACGGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATT</genome_strand>
        <mrna_strand>CATCATCATCATCAACAATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGGCACATTACTCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGTTTCACAATCACTTTTGTAAACACTCATTATATACATTCTAAGATTTCCAATTCACAATCTATAGAAAATTCTCAAATGAAAAACAAAGATGATTTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTATGCAACGGTGAATGATGGGTTTACTTTAGGGATTGATAGGTCATTGAATCATGACCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316374" ref_strand="+" ref_description="SGN-E316374 [cTOA-25-M4]">
      <seq>aaccacatggtggcccatagaagagaacacccttagaaggagacataccaaacttctcgaacttctcgggatgttccacaggatattgaacagtctacaaaacaaataaaagattaggtcaggtaaatcaacaaggttaacaggttagcagatcataatattcatcattttatgtttagtatatatgtacctcttgaagctcacgcttgacattctcaaggcctccaatgtcctcccaggagatattaggaacttcaacaacctgttccgccatacgtcataattaggaaacgagtggaggatatgtagtaggagaagccttgaacgaaaagaaatgtagacttacagtttcacgcagggcagatggattgcttgtcccaagagcagttgagaagtgctcgttggtcacagccattggatttaatatctctgcgtcgatagattcatcttccaaatcaatcacatccatcttctctctgatgcactgaagtgcagcctcagtacacaaagctgccaaatccgcaccaacataaccatgtgtttctttgcaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="62494" stop="61343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62285" g_stop="62277" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62276" i_stop="62189" i_length="88">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62188" g_stop="61643" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="555" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E316374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62285" e_stop="62277"/>
          <exon e_start="62188" e_stop="61643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACATGGTAAGCAATTCTGGACCCTTGATACTAATAAAATTGGCCTGGCATTCGTTTGCAATAGCCTTCGCCAACAAAGTTTTCCCGCATCCAGGTGGCCCATAGAAGAGAACACCCTTAGAAGGAGACATACCAAACTTCTCGAACTTCTCGGGATGTTCCACAGGATATTGAACAGTCTACAAAACAAATAAAAGATTAGGTCAGGTAAATCAACAAGGTTAACAGGTTAGCAGATCATAATATTCATCATTTTATGTTTAGTATATATGTACCTCTTGAAGCTCACGCTTGACATTCTCAAGGCCTCCAATGTCCTCCCAGGAGATATTAGGAACTTCAACAACCTGTTCCGCCATACGTCATAATTAGGAAACGAGTGGAGGATATGTAGTAGGAGAAGCCTTGAACGAAAAGAAATGTAGACTTACAGTTTCACGCAGGGCAGATGGATTGCTTGTCCCAAGAGCAGTTGAGAAGTGCTCGTTGGTCACAGCCATTGAATTTAATATCTCTGCGTCGATAGATTCATCTTCCAAATCAATCACATCCATCTTCTCTCTGATGCACTGAAGTGCAGCCTCAGTACACAAAGCTGCCAAATCCGCACCAACATAACCATGTGTTTCTTTGCAAATCC</genome_strand>
        <mrna_strand>AACCACATG........................................................................................GTGGCCCATAGAAGAGAACACCCTTAGAAGGAGACATACCAAACTTCTCGAACTTCTCGGGATGTTCCACAGGATATTGAACAGTCTACAAAACAAATAAAAGATTAGGTCAGGTAAATCAACAAGGTTAACAGGTTAGCAGATCATAATATTCATCATTTTATGTTTAGTATATATGTACCTCTTGAAGCTCACGCTTGACATTCTCAAGGCCTCCAATGTCCTCCCAGGAGATATTAGGAACTTCAACAACCTGTTCCGCCATACGTCATAATTAGGAAACGAGTGGAGGATATGTAGTAGGAGAAGCCTTGAACGAAAAGAAATGTAGACTTACAGTTTCACGCAGGGCAGATGGATTGCTTGTCCCAAGAGCAGTTGAGAAGTGCTCGTTGGTCACAGCCATTGGATTTAATATCTCTGCGTCGATAGATTCATCTTCCAAATCAATCACATCCATCTTCTCTCTGATGCACTGAAGTGCAGCCTCAGTACACAAAGCTGCCAAATCCGCACCAACATAACCATGTGTTTCTTTGCAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244964" ref_strand="+" ref_description="SGN-E244964 [cLEF-2-M16]">
      <seq>gtcaatgtctttgctgaagctccttgataaaaaaaaaagtaattatattttgtaagtgatacgtatttattatctgttttaatttgtgagatgtgaataatagatgttgttacgtgtgagtacaatcagttgaatttgttgtttttagcttgatatgtagatacaacgttattcctttaaaaaaaaaactttttatctgttgaatttattttgaatttactagttatatatttctaagaaacaattttgttgaaataatagtggataagattttatctacaatattaaagataatatttgttattgaagtcaaagtctttgttaaagtttcttgaaaaattattatttgtaagtttgtaatgtatggggtataattagttttaattttagggcttaatttgtggtgatgattaaaaatttcccatttaattagagatttatttgaggagtgttagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="79930" stop="80990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80230" g_stop="80690" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E244964" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80230" e_stop="80690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTCTTTGCTGAAGCTCCTTGATAAAAAAAATAATAATTATATTTTGTAAGTGATACGTATTTATTATCTGTTTTAATTTGTGAGATGTGAATAATAGATGTTATTACGTGTGAGTACAATCAGTTGAATTTGTTGTTTTTAGCTTGATATGTAGATACAACGTTATTCCTTTAAAAAAAAAAAAACCTTTTATCTGTTGAATTTATTTTGAATTTACTAGTTATATATTTCCAAGGAACAATTTTGTTGAAATAATAGTGGATAAGATTTTATCTACAATATTAAAGATAATATTTGTTATTGAAGTCAAAGTCTTTGTTAAAGTTTCTTGAAAAATTATTATTTGTAAGTTTGTAATATATGGGGTATAATTAGTTTTAATTTTAGGGCTTAATTTGCGGTGATGATTAAAAATTTTCGATTTAATTAGAGATTTATTTGAGGAGTGTTAGTAG</genome_strand>
        <mrna_strand>GTCAATGTCTTTGCTGAAGCTCCTTGATAAAAAAAAAAGTAATTATATTTTGTAAGTGATACGTATTTATTATCTGTTTTAATTTGTGAGATGTGAATAATAGATGTTGTTACGTGTGAGTACAATCAGTTGAATTTGTTGTTTTTAGCTTGATATGTAGATACAACGTTATTCCTTT---AAAAAAAAAACTTTTTATCTGTTGAATTTATTTTGAATTTACTAGTTATATATTTCTAAGAAACAATTTTGTTGAAATAATAGTGGATAAGATTTTATCTACAATATTAAAGATAATATTTGTTATTGAAGTCAAAGTCTTTGTTAAAGTTTCTTGAAAAATTATTATTTGTAAGTTTGTAATGTATGGGGTATAATTAGTTTTAATTTTAGGGCTTAATTTGTGGTGATGATTAAAAATTTCCCATTTAATTAGAGATTTATTTGAGGAGTGTTAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540249" ref_strand="+" ref_description="SGN-E540249 [TUS-60-G20]">
      <seq>tttttttaaaaaaatgttttcttcttcttcatcatcatcaaatccatctctccgggtgaaaattccggtgaccggagaaggaaaattgagaataaatgtgaaatctccgacgtcggagatgtatacggaggttaaagaatcagataaagtgaaagatttggagaaattgattaaaaaagcatggggagataatgataattatgtatcactttattataattcaattaaaatgaatagtgattatttattatctttttataatttgagagatggctctattattaccgtatctcttctcgctgaaccacctcatcatcatcatcatcgtcttcatcatcaatcgaaattttcatgtgaaaccaagaaaaatgtcaaatttcaagaggagacaaacagcacctccaatggtgaaattaatggttgtcaaagctttttatttcatatggcaaagatgtcatctcaattttgctcttccatattttcaagacattaaattatgtatctgagagaaagtggaaggagttcgaaagacgaatcgtcgttacagatatcaataaaatcgagttaatatgtcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="81799" stop="105466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82099" g_stop="82441" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82442" i_stop="84681" i_length="2240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84682" g_stop="84909" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="571" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84910" i_stop="89716" i_length="4807">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89717" g_stop="89737" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="592" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E540249" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82099" e_stop="82441"/>
          <exon e_start="84682" e_stop="84909"/>
          <exon e_start="89717" e_stop="89737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAAAAAAATGTTTTCTTCTTCTTCAGCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCGGTACGTTTATTTCTGACTTTCTTCTCACTCGAGTTCATTTTTAGGATAATTGCATTTTTAGTCGTTCAATTATGAAATTATTATATTTTGATCCTTATAGTCATCTTGTTAAAGTCATTGTTAGGATGATTTATCTTATATGTGGTATTTTATCATGATCGTTTTCATTTACGTTATTGCCTTTTATCTTGAGTTGAGAATCTGTTCAAAACAGCCTCTCTGTCACTAATTAGTGATATAAACTCTAGAACTTCTATCCTTTTCATATTTTATTTCGAAATATTATACCAAATTTATTGATATTGTTATTGTTATATTGAATTGTATTGTCTTAATTAAATAGTGAAATAGTAGATAATTATGTTAAATTTTGTGAATATTTATGAGGAAAGTGATGAAAAACATATTTTAAGTAATTAAAGTTGAATATATTTATTTAGATATGATAATATTCAAAACTAAAATTTATTAGTAAATGAGGGACCAAAAATGTTATTAACCATTTTCTTTTTAAAAAATTGCATCTTTTGTCTCTTAATTATTCATGATTTTTTATTGTAGTTTTTGTGATATTTGAGAAAATATATTTGGTGTGCTATTAATTGAAACACGTGTTTTTAGTTATTTTATATAGAAAAATATGTTATATTTGCATTATTTAATTATTTTACTATAAAACATGGAGTAATAATATATATGAAAAAATAAATAGTAGAATAGTTGATAATTGTGATAAATTGGGTAGATATTGCATCAATTAAGAAATCAAAAGCAATACATTTGAAATAATAGAATGTTAAATATTCTTAATCATACATCACAATTACTGAAAATATAATTTATCAATAATTGAGATACTAAAAATAATATTACCTTTTTTTTTATTTTGTAAAATCTTGAATTCCTTTTACTTTAAGTTAATTGTCATTTTACCAAATTTGTTGAAAATTTAATTTTCAATTTCAGAAATTAATTGATACAATTCAAAAGATAAATTGACAGTTGAATAGATTGCAGCATGTGACCTACTTATCTTATCTTATCCAATTAATTAATTACTTGCTTTTTATTTCTTTTACTTATTTTGTCTTCACATATTAATTTCCAATATATTTTTTAAAATTATTAAAAGTGCAAATTATATTGATTTTGACATTGAGCCTTATGTATATGAGATTTATAGTTGATTGAAATAATAAGAATTTTTTTTCCATACCCAAGGAACAAAATCTCTAAGTAGATGATAAATAATTTAATGAATATCGATTCTTTTTAATTACAATTCATGATTTATGTTATTTGTCTTTTCAAAATTAACATAAAAATGTATAATTACGTAAAATATAATATATTTTTTAAAAATTTAACACTAATACAACGATATTTTTTAAAGAGTCAAAATAATATTTAACTTCTAGCTGATTGCAATTTTTAATTTAGAAATTTGGAAATAATATTTAATTTAGGAGTTGCTTAGTTTTCGAATTTCTCATCTTTGGAATTTGGAAATTTGACCAAATGTACTTTGACTAAATCAACTATTAGTCCTTTTTAGATGTATTTTTATTAAAAAAATATATCACTTTCCATTTTCGCGTAATTAGATATTTTAAAACTATAGATAAAGTATCGATATTCTAAAACTATAGGTAAAGTATTTTATTTGTTCAATAATATTTGTTTATTATTGATTTTGTGTATTTTTTAAAAAATTATAAATAAAATATAATATCTTGAATAATGTAAATAAATGATTATAATTAATGATGAGGAAAAATAAGAAACTCAATGTAAAATTATTTATTGATTTCATAAAATATTTCAAAATAATATAGTGAATAACTATTGTTGAACAGAAAAAGTAAATAAATACAAACAATTAAATCTCTTGAAATTATCACATAAAAGATGTAAATAAAGGATAAAAATGAATAAAAATTCCAACAACTCTCTTGGGGAATATTACTTTAGCTCATTAAGAAAAGTTGCAATAACTAATTACTAAATTATTTCTATTTATTTTATATCGTAAATTAAGCAATATTAATAAAAATATTCTCTTAATATGAGGGTTTGGTTGTAAACAATTTTTCTGTCACGAATTTTTAAAGCAATATATGTTACGACGAACAAATAACTGTCGTTAAAATAATATTTATTTTGAAATAAAGAAAGTACCACATGTTTATTTTATATTTTTTTAAAAATATTTATTTAATGTTTGTGTCTTGGAAATGCAGAAATCTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACATATATCAATAAAATCGAGTTAATATGTTATTACTATCGATATTTATTAACTAAACATTCTAAGATTTTACGTTAGTTTTTTCTACTTTATTTGTACTCCTATAAGATCTACTTATTTTGACATTAGTCTTCATTCTCTCTTAGGGTTTTAAATATTTTGAAAGTTAAATCGGGCGAAAAACATATAAAATATTTTGTCTTTTTGAGTTTCATATTCGAAATTCGAATTATTAGTTGTATAAGTTTTTCATCTGAACTATTCTTAAATATTTATCAAAATGTTTAGTAATTGTAATATATTTATTTAATTATTTCAATCGAATATCTTAACCTAAGCTCTAGTATATCTAAGTATATACTACCAAACAAAATTTATTATATTAGTTTTAATAAATGAATAATCTCATTCGTAATCAACAATCAAATCAAACGAACTCTTAGAGTGAAATCTTAAATTTAAAATTATAGAATTTTCAATATGAAGCTTTTTTTTTTATTTGGAATTTTACTATAATTGATAAGGTGTCATTCTAAAATAAAAACAATAGTACAATTTTCATTTTCTATTTATATAAACAATATGATTAAAAAAAGATAAGAAATCCCAAAAACAATTGTGACATTCAAGGCTTTATTACAAAAGTAGCCAATATAATGTAGATTAAGTTTTAAAAAATAACCATTTTTGTTTTGGCCATTACATCCTCAACAAACAAATCAAAGTTTTTCTCTGAACTTCCATTGGCTAATATTGCAATTTCCATAGTTTTCTTCACTTCCTTTATAACCTTCCTCAAATCTTTTGAGTTTTCTTCACTCATAAGAAAATTAATCTTTTTTGCTATTTCCTCCTTTGTAATAATTGATTTATTATTAATATCATAATTATCACAAAGATTAATCCCAACTTTCCAATCATCAACCACCAACTTTCTATTAGTTTGTTGATCAACACTTATAAGATGACATACCATTGGTACACTTGCCCATAAGCTCTCTTACACCATTTTTTGGGTGATCCGGATTTCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGACATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTTGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCTGACATCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGCTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCAAAGCGAGCATACGCCTCATTTCGACGATTATCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTAAAAAATGCCAAATTTTTTCATGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTACGGCCCATTTGGAGGGTCAAATGAGCCCCGAAGCGAGCATACGCCTCATTTCGATGATTTTCGTGTGCTATAGCACACCATTTTTTGAATGATCCGGATTCCGACGTCAAAAATGCAAAATTTTTTCGTGGACGTCCGTCAAGACCTTCTCTATGCATACGGTTGGTCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTTGTGTGCTATAGCACATCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGTTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCAACAATTTTCGTGTGCTGTAGCACACCATTTTTTGGGTGATCTGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCATGGCTTGTTCGACCCATTTAGAGGGTCAAAGGAGCCCCGAAGCGAGCATACACCTCATTTCGACGATTTTCGTGTGCTATAAGCACACCATTTTTTGGGTGATCCGATTCCGACGTCAAAAATGCCAAAAATTTTCGTGGACGTCCTTCAAGACCTTGTCTATGTATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGCCTCATTTTGACGATTTTCGTGTGCTATAGCACACCATTTATTGGGTGATCCGGATTCCGACGTCACAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTCCAACCCATTTGGAGGGTCAAACGAGCCCTGAAGCGAGCATACGCCTCATTTCGACGATTTTGGTGTGCTATAGCACGCCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCTTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCTGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGCATTCCGACTTCAAAAATGCCATATTTTTTCGTAGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTATGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAATTGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCTATTTGGAGGGTCAAACAAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGTTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGACAAGACCTTGTCTATGCATAGGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTTATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGATGATTTGGATTCCGACGTCAAAAATGCCAAATTTTTATGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGATTCCGACGTCAAAAATGCCAAAAATTTTCGTGGACGTCCTTCAAGACCTTGTCTATGTATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTATTGGGTGATCCGGATTCCGACGTCACAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTCCAACCCATTTGGAGGGTCAAACGAGCCCTGAAGCGAGCATACGCCTCATTTCGACGATTTTGGTGTGCTATAGCACGCCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCTTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCTGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGCATTCCGACTTCAAAAATGCCATATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTATGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAATTGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCTATTTGGAGGGTCAAACAAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGTTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCTTCAAGACCTTGTCTATGCATACGGTTGGCCATCACAGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCAGACGCCTCATTTCGACGATTTTCGTATGCTATAGCACACTATTTTTTAGGTGATCCGGATTCCGACGTCAAAATTGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGATGATTTTCGTGTGCTATAGCACACTATTTTTTGGGTGATCCGGACTCAGACGTCAAAAATGAAAAAAAATTT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGTTTTCTTCTTCTTCATCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACAGATATCAATAAAATCGAGTTAATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540246" ref_strand="+" ref_description="SGN-E540246 [TUS-60-G20](-)">
      <seq>tttttttaaaaaaatgttttcttcttcttcatcatcatcaaatccatctctccgggtgaaaattccggtgaccggagaaggaaaattgagaataaatgtgaaatctccgacgtcggagatgtatacggaggttaaagaatcagataaagtgaaagatttggagaaattgattaaaaaagcatggggagataatgataattatgtatcactttattataattcaattaaaatgaatagtgattatttattatctttttataatttgagagatggctctattattaccgtatctcttctcgctgaaccacctcatcatcatcatcatcgtcttcatcatcaatcgaaattttcatgtgaaaccaagaaaaatgtcaaatttcaagaggagacaaacagcacctccaatggtgaaattaatggttgtcaaagctttttatttcatatggcaaagatgtcatctcaattttgctcttccatattttcaagacattaaattatgtatctgagagaaagtggaaggagttcgaaagacgaatcgtcgttacagatatcaataaaatcgagttaatagtcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="81799" stop="105466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82099" g_stop="82441" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82442" i_stop="84681" i_length="2240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84682" g_stop="84907" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="569" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84908" i_stop="86449" i_length="1542">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86450" g_stop="86472" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="592" r_length="23" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E540246" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82099" e_stop="82441"/>
          <exon e_start="84682" e_stop="84907"/>
          <exon e_start="86450" e_stop="86472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAAAAAAATGTTTTCTTCTTCTTCAGCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCGGTACGTTTATTTCTGACTTTCTTCTCACTCGAGTTCATTTTTAGGATAATTGCATTTTTAGTCGTTCAATTATGAAATTATTATATTTTGATCCTTATAGTCATCTTGTTAAAGTCATTGTTAGGATGATTTATCTTATATGTGGTATTTTATCATGATCGTTTTCATTTACGTTATTGCCTTTTATCTTGAGTTGAGAATCTGTTCAAAACAGCCTCTCTGTCACTAATTAGTGATATAAACTCTAGAACTTCTATCCTTTTCATATTTTATTTCGAAATATTATACCAAATTTATTGATATTGTTATTGTTATATTGAATTGTATTGTCTTAATTAAATAGTGAAATAGTAGATAATTATGTTAAATTTTGTGAATATTTATGAGGAAAGTGATGAAAAACATATTTTAAGTAATTAAAGTTGAATATATTTATTTAGATATGATAATATTCAAAACTAAAATTTATTAGTAAATGAGGGACCAAAAATGTTATTAACCATTTTCTTTTTAAAAAATTGCATCTTTTGTCTCTTAATTATTCATGATTTTTTATTGTAGTTTTTGTGATATTTGAGAAAATATATTTGGTGTGCTATTAATTGAAACACGTGTTTTTAGTTATTTTATATAGAAAAATATGTTATATTTGCATTATTTAATTATTTTACTATAAAACATGGAGTAATAATATATATGAAAAAATAAATAGTAGAATAGTTGATAATTGTGATAAATTGGGTAGATATTGCATCAATTAAGAAATCAAAAGCAATACATTTGAAATAATAGAATGTTAAATATTCTTAATCATACATCACAATTACTGAAAATATAATTTATCAATAATTGAGATACTAAAAATAATATTACCTTTTTTTTTATTTTGTAAAATCTTGAATTCCTTTTACTTTAAGTTAATTGTCATTTTACCAAATTTGTTGAAAATTTAATTTTCAATTTCAGAAATTAATTGATACAATTCAAAAGATAAATTGACAGTTGAATAGATTGCAGCATGTGACCTACTTATCTTATCTTATCCAATTAATTAATTACTTGCTTTTTATTTCTTTTACTTATTTTGTCTTCACATATTAATTTCCAATATATTTTTTAAAATTATTAAAAGTGCAAATTATATTGATTTTGACATTGAGCCTTATGTATATGAGATTTATAGTTGATTGAAATAATAAGAATTTTTTTTCCATACCCAAGGAACAAAATCTCTAAGTAGATGATAAATAATTTAATGAATATCGATTCTTTTTAATTACAATTCATGATTTATGTTATTTGTCTTTTCAAAATTAACATAAAAATGTATAATTACGTAAAATATAATATATTTTTTAAAAATTTAACACTAATACAACGATATTTTTTAAAGAGTCAAAATAATATTTAACTTCTAGCTGATTGCAATTTTTAATTTAGAAATTTGGAAATAATATTTAATTTAGGAGTTGCTTAGTTTTCGAATTTCTCATCTTTGGAATTTGGAAATTTGACCAAATGTACTTTGACTAAATCAACTATTAGTCCTTTTTAGATGTATTTTTATTAAAAAAATATATCACTTTCCATTTTCGCGTAATTAGATATTTTAAAACTATAGATAAAGTATCGATATTCTAAAACTATAGGTAAAGTATTTTATTTGTTCAATAATATTTGTTTATTATTGATTTTGTGTATTTTTTAAAAAATTATAAATAAAATATAATATCTTGAATAATGTAAATAAATGATTATAATTAATGATGAGGAAAAATAAGAAACTCAATGTAAAATTATTTATTGATTTCATAAAATATTTCAAAATAATATAGTGAATAACTATTGTTGAACAGAAAAAGTAAATAAATACAAACAATTAAATCTCTTGAAATTATCACATAAAAGATGTAAATAAAGGATAAAAATGAATAAAAATTCCAACAACTCTCTTGGGGAATATTACTTTAGCTCATTAAGAAAAGTTGCAATAACTAATTACTAAATTATTTCTATTTATTTTATATCGTAAATTAAGCAATATTAATAAAAATATTCTCTTAATATGAGGGTTTGGTTGTAAACAATTTTTCTGTCACGAATTTTTAAAGCAATATATGTTACGACGAACAAATAACTGTCGTTAAAATAATATTTATTTTGAAATAAAGAAAGTACCACATGTTTATTTTATATTTTTTTAAAAATATTTATTTAATGTTTGTGTCTTGGAAATGCAGAAATCTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACATATATCAATAAAATCGAGTTAATATGTTATTACTATCGATATTTATTAACTAAACATTCTAAGATTTTACGTTAGTTTTTTCTACTTTATTTGTACTCCTATAAGATCTACTTATTTTGACATTAGTCTTCATTCTCTCTTAGGGTTTTAAATATTTTGAAAGTTAAATCGGGCGAAAAACATATAAAATATTTTGTCTTTTTGAGTTTCATATTCGAAATTCGAATTATTAGTTGTATAAGTTTTTCATCTGAACTATTCTTAAATATTTATCAAAATGTTTAGTAATTGTAATATATTTATTTAATTATTTCAATCGAATATCTTAACCTAAGCTCTAGTATATCTAAGTATATACTACCAAACAAAATTTATTATATTAGTTTTAATAAATGAATAATCTCATTCGTAATCAACAATCAAATCAAACGAACTCTTAGAGTGAAATCTTAAATTTAAAATTATAGAATTTTCAATATGAAGCTTTTTTTTTTATTTGGAATTTTACTATAATTGATAAGGTGTCATTCTAAAATAAAAACAATAGTACAATTTTCATTTTCTATTTATATAAACAATATGATTAAAAAAAGATAAGAAATCCCAAAAACAATTGTGACATTCAAGGCTTTATTACAAAAGTAGCCAATATAATGTAGATTAAGTTTTAAAAAATAACCATTTTTGTTTTGGCCATTACATCCTCAACAAACAAATCAAAGTTTTTCTCTGAACTTCCATTGGCTAATATTGCAATTTCCATAGTTTTCTTCACTTCCTTTATAACCTTCCTCAAATCTTTTGAGTTTTCTTCACTCATAAGAAAATTAATCTTTTTTGCTATTTCCTCCTTTGTAATAATTGATTTATTATTAATATCATAATTATCACAAAGATTAATCCCAACTTTCCAATCATCAACCACCAACTTTCTATTAGTTTGTTGATCAACACTTATAAGATGACATACCATTGGTACACTTGCCCATAAGCTCTCTTACACCATTTTTTGGGTGATCCGGATTTCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGACATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTTGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCTGACATCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGCTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCAAAGCGAGCATACGCCTCATTTCGACGATTATCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTAAAAAATGCCAAA</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGTTTTCTTCTTCTTCATCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACAGATATCAATAAAATCGAGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285904" ref_strand="+" ref_description="SGN-E285904 [cLES-13-I7]">
      <seq>ttttttaaaaaaatgttttcttcttcttcatcatcatcaaatccatctctccgggtgaaaattccggtgaccggagaaggaaaattgagaataaatgtgaaatctccgacgtcggagatgtatacggaggttaaagaatcagataaagtgaaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="+" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="81800" stop="82557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82100" g_stop="82257" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="+" ref_id="SGN-E285904" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82100" e_stop="82257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAAAAAATGTTTTCTTCTTCTTCAGCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTT</genome_strand>
        <mrna_strand>TTTTTTAAAAAAATGTTTTCTTCTTCTTCATCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546044" ref_strand="+" ref_description="SGN-E546044 [TUS-69-D8](-)">
      <seq>agtattatatttttcacttggtagcttgtgtagtccaagcaaagaaaatgttatagaatttgctcaaggaatattgcttagcaaagtggaatattttatttgggtacttagacctaatttggcggttacgaacgaaacggataattatttcccagctggatttcgagaaaatatagatcgagggttgattgtaccgtggtgcgatcaacgagccgtactgtcgcacccggcgatcggaaggtttttgacgcactgtggatggaactcaattctggagagcttatgggcaagtgtaccaatgatatgtcatcctataagtgttgatcaacaaactaatagaaagttggtggttgatgattggaaagttgggattaatctttgtgataattatgatattaataataaattaattattccaaaggaggaaatagcaaaaaagattaattttcttatgagtgaagaaaattcaaaagatttgaggaaggttataaaggaagtgaagaaaactatggaaattgcattattagccaatggaagttcagagaaaaactttgatttgtttgttgaggatgtaatggccaaaacaaaaatggctattttttaaaacttaatctacactatattggctacttttgtaataaagccttgttgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="96761" stop="85208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96461" g_stop="96341" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96340" i_stop="95645" i_length="696">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95644" g_stop="95616" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="151" r_length="30" r_score="0.517"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95615" i_stop="91320" i_length="4296">
            <donor d_prob="0.839" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91319" g_stop="91269" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="198" r_length="47" r_score="0.549"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91268" i_stop="87448" i_length="3821">
            <donor d_prob="0.525" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87447" g_stop="87392" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="253" r_length="55" r_score="0.607"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87391" i_stop="86039" i_length="1353">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86038" g_stop="86017" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="275" r_length="22" r_score="0.545"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86016" i_stop="85881" i_length="136">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85880" g_stop="85507" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="649" r_length="374" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="700"/>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E546044" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96461" e_stop="96341"/>
          <exon e_start="95644" e_stop="95616"/>
          <exon e_start="91319" e_stop="91269"/>
          <exon e_start="87447" e_stop="87392"/>
          <exon e_start="86038" e_stop="86017"/>
          <exon e_start="85880" e_stop="85507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTATATTTTTCACTTGGTAGCTTGTTTAGTCCAAGCAAACAAGATGTTATGGAATTTGCTCAAGGAATATTGCTTAGCAAAGTGGAATATTTTATTTGGGTACTTAGACCTAATTTGGTATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAAATCGTCGAAATGAGCCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCAGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGCGTGCTATAGCACACCAAAATCGTCGAAATGAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACCGTATGCATAGAAAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTGTGACGTCGGAATCCGGATCACCCAATAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATACATAGACAAGGTCTTGAAGGACGTCCACGAAAATTTTTGGCATTTTTGACGTCGGAATCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACG-TCCACATAAAAATTTGGCATTTTTGACGTCGGAATCCAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCCTATGCATAGACAAGGTCTTGTCAGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGGGGCTTGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGATGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATTCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCAAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGCACAAGCCGTGACGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAATCCGGATCACCCAAAAAATGGTGTGTTATAGCACATGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACTGTATGAATAGACAAGGTATTAACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCATATGCATAGACAAGGTCTTGACGGACGTCCACATAAAAATTTGGCATTTTTGACTTCGGAATCCAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCCTGATGGCCAACCATATGCATAGACAAGGTCTTGACAGACATCCACGAAAAAATTTGGCATTTTTGACGTCGGAATACGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCATCGAAATGAGGCATATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGAAATCTGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCATCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGACGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAATTTTTTGCATTTTTGACGTCTGAGTCCGGATCACCCAAAAAATAGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATATGGCATTTTTGACGTCGGAATCCGGATCACCAAAAAATGGTGTGCTATATCACACGAAAATCGTCGAAATGAGCCGTATGCTAGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTTAGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGGCTTGGAGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCTAAAAAATGGCGTGCTATAGCACACCAAAATCGTCGAAATGAGGCGCATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCGACCGTATGCATAGAAAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTGTGACGTCGGAATCCGGATCACCCAATAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAATTTTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGATCTTGACGGACGTCCACATAAAAATTTGGCATTTTTGACGTCGGAATCCAAATCATCCAAAAAATGGTATGCTATAGCACACGAAAATCATCGAAATAAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACATGGTCTTGTCAGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGGGGCTTGTTAGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATTCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCAAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGTACAAGCCGTGACGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAATCCGGATCACCCAAAAAATGGTGTGTTATAGCACATGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACCGTATGAATAGACAAGGTCTTAACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTTGGAATCCGGATCACCCAAAAAATGGTGTGCTATAACACACGAAAATCATCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCATATGCATAGACAAGGTCTTGACGGACGTCCACATAAAAATTTGGCATTTTTGACTTCGGAATCCAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACAGACATCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCATTGAAATGAGGCGTATGATTGCTTCGGGGCTTGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGAAATCTGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGACTGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTTACATTTTTGACGTCTGAGTCCGGATCACCCAAAAAATAGTGTGCTATAGCACACGAAAATCATCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTTATGGACCACGAAAAAATTTGACAATTTTAACGTCGAAATCAGGATCACCCAAAAAATATTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTTTGCATAGACAAGGTCTTGACGGACGTCCACAAAAAATATGGCATTTTTGAAGTCGGAATGCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCATATGCTTGCTTCGGGGCTCGTTTGACCCACAATATGGGTCGGACAAGCCGTGATGGACAACCGTGTGCATAGACAAGGTCTTGACGGACGTCCATGAAAAAATTTGGCATTTTTGACGTCGGAATCTGGATCACCTAAAAAATAGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTCTGCTCGTTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCTGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATTTGGCATTTTTAACGTCGGAATCCGGATCAACCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCTAAATGGGTCGTACAAGCCGTGATGGCCAACCGTATGCATAGACAAAGTCTTGACGGACGTCCACGAAAAAATGTGGCATTTTGTGACGTCAGAATTCGGATCACCCAATAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGTGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCATGATGGCCAACCGTATGCATAGACAAGGTCATGAAGGACGTCCACAAATTTTTTTTGCATTTTTGACGTCGGAATCCGTATCACCCAAAAATTGGTGTGTTATAGCACATGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCATTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACCGTATGAATAGAAAAGGTCTTAACGGACGTCCACGAAAAAATTTTGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGTTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATACATAGACAAGGTCTTGATGGACGTCCAGAAAAAAATTTGGCATTTTTGACGTCAGAATCAAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAACAGGTCGGACAAGCCGTGATGGCCAACCATATGCATAGACAAGGTCTTGACGGACGTCCACATAAAAATTTGGCATTTTTGACTTCGGAATCCAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCTTCTTCAGATCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACAGACATCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCCATAGCACACGAAAATCGTCGAAATGAGGCGTATGATTGCTTCGGGGCTTGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGACATTTTTGACGTCGAAATATGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGACGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAATTTTTTTTCATTTTTGACGTCTGAGTCCGGATCACCCAAAAAATAGTGTGCTATAGCACACGAAAATCATCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGACAATTTTGACGTCGGAATCCGGATCACCTAAAAAATAGTGTGCTATAGCATACGAAAATCGTCGAAATGAGGCGTCTGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCTGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCAACCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTTGTTTGACCCTCCAAATAGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGACAATTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCATACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATATGGCATTTTTGAAGTCGGAATGCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCAGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGCGTGCTATAGCACACCAAAATCGTCGAAATGAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACCGTATGCATAGAAAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTGTGACGTCGGAATCCGGATCACCCAATAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATACATAGACAAGGTCTTGAAGGACGTCCACGAAAATTTTTGGCATTTTTGACGTCGGAATCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACATAAAAATTTGGCATTTTTGACGTCGGAATCCAAATCATCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATAAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCCTATGCATAGACAAGGTCTTGTCAGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCAACCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTTGTTTGACCCTCCAAATAGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGACAATTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCATACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCTACGAAAAAATATGGCATTTTTGAAGTCGGAATGCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGTCAGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGAAGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGCGTGCTATAGCACACCAAAATCGTCGAAATGAGGCGTATGCTCGCTTCAGGGCTCGTTTGACCCTCCAAATGGGTTGGACAAGCCGTGATGGCCAACCGTATGCATAGAAAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTGTGACGTCGGAATCCGGATCACCCAATAAATGGTGTGCTATAGCACACGAAAATCGTCAAAATGAGGCGTATGCTTGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATACATAGACAAGGTCTTGAAGGACGTCCACGAAAATTTTTGGCATTTTTGACGTCGGAATCGGATCACCCAAAAAATGGTGTGCTTATAGCACACGAAAATCGTCGAAATGAGGTGTATGCTCGCTTCGGGGCTCCTTTGACCCTCTAAATGGGTCGAACAAGCCATGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCAGATCACCCAAAAAATGGTGTGCTACAGCACACGAAAATTGTTGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGAACCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACAAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGATGTGCTATAGCACACAAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGACCAACCGTATGCATAGAGAAGGTCTTGACGGACGTCCACGAAAAAATTTTGCATTTTTGACGTCGGAATCCGGATCATTCAAAAAATGGTGTGCTATAGCACACGAAAATCATCGAAATGAGGCGTATGCTCGCTTCGGGGCTCATTTGACCCTCCAAATGGGCCGTACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCATGAAAAAATTTGGCATTTTTTACGTCGGAATCTGGATCACCCAAAAAATGGTGTGCTATAGCACACGATAATCGTCGAAATGAGGCGTATGCTCGCTTTGGGGCTCGTTTGACCCTCCAAATGGGTCGGACAAGCCGTGATGGCCAAGCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGATGTCAGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCAAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGGCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGGAATCCGGATCACCCAAAAAATGGTGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTATGCTCGCTTCGGGGCTCGTTTGACCCTCCAAATGGGCCGGACAAGCCGTGATGTCCAACCGTATGCATAGACAAGGTCTTGACGGACGTCCACGAAAAAATTTGGCATTTTTGACGTCGAAATCCGGATCACCCAAAAAATGGTGTAAGAGAGCTTATGGGCAAGTGTACCAATGGTATGTCATCTTATAAGTGTTGATCAACAAACTAATAGAAAGTTGGTGGTTGATGATTGGAAAGTTGGGATTAATCTTTGTGATAATTATGATATTAATAATAAATCAATTATTACAAAGGAGGAAATAGCAAAAAAGATTAATTTTCTTATGAGTGAAGAAAACTCAAAAGATTTGAGGAAGGTTATAAAGGAAGTGAAGAAAACTATGGAAATTGCAATATTAGCCAATGGAAGTTCAGAGAAAAACTTTGATTTGTTTGTTGAGGATGTAATGGCCAAAACAAAAATGGTTATTTTTTAAAACTTAATCTACATTATATTGGCTACTTTTGTAATAAAGCCTTGA</genome_strand>
        <mrna_strand>AGTATTATATTTTTCACTTGGTAGCTTGTGTAGTCCAAGCAAAGAAAATGTTATAGAATTTGCTCAAGGAATATTGCTTAGCAAAGTGGAATATTTTATTTGGGTACTTAGACCTAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTACGAACGAAACGGATAATTATTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTGGATTTCGAGAAAAT-ATAG-ATCGAGG-GT-TGATTGTACCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATCAACGAGCCGTACTGTCGCACCCGGCG-ATCGGAAGGTTTTTGACGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGATGGAACTCAATTCTGG........................................................................................................................................AGAGCTTATGGGCAAGTGTACCAATGATATGTCATCCTATAAGTGTTGATCAACAAACTAATAGAAAGTTGGTGGTTGATGATTGGAAAGTTGGGATTAATCTTTGTGATAATTATGATATTAATAATAAATTAATTATTCCAAAGGAGGAAATAGCAAAAAAGATTAATTTTCTTATGAGTGAAGAAAATTCAAAAGATTTGAGGAAGGTTATAAAGGAAGTGAAGAAAACTATGGAAATTGCATTATTAGCCAATGGAAGTTCAGAGAAAAACTTTGATTTGTTTGTTGAGGATGTAATGGCCAAAACAAAAATGGCTATTTTTTAAAACTTAATCTACACTATATTGGCTACTTTTGTAATAAAGCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546045" ref_strand="+" ref_description="SGN-E546045 [TUS-69-D8]">
      <seq>aagcaaccaaaaacctcatgcaatagtaattccatgcccatttcaaggccacataaaccctagtattcacctttcactaaaacttgcaacaaaaggctttaccataacatttatcaacacaaagtatagccatgcccaaataaccaaatcacaaaaattagaccaaactcataacatatttgcaaaatttcaagaacttggccttgacatacattatcaaacagtttgtgatggttttcccttagaattcgatcgattttcggtgtcgaataccgagaagttttgcgaaggatttttactaaattacccttttcatgttgatgaaattgttgggaagttagtagaattggatagccctaggccaacttgtttgattgttgacactttctatggttgggggacaacaattgctaataagtatggacttgttagtgtttcattcttcactcaacctgccttggtgtttactatagactatcatcttgaccttttgctcaaaaatggtcattttggctcaattgataatagaaaggataccatatattatctaccaggaatttcagcaattgatccaagtgatttaccttcatatttacaaacaaaagagacatcaactattcttcatcaaattatctacaaaggttttgaagaagccaagaatcagacattataatttgtaacacaatacaagaacttgaaatcaaagtaatttcaatattccaagaaaaaacaaaaaaaccctttttttgctattggtccattttttcatgatcatcaattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="98539" stop="96246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98239" g_stop="97719" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97718" i_stop="96808" i_length="911">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96807" g_stop="96546" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="783" r_length="262" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E546045" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98239" e_stop="97719"/>
          <exon e_start="96807" e_stop="96546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACCAAAAACCTCATGCAATAGTAATTCCATGCCCATTTCAAGGCCACATAAACCCTAGTATTCACCTTTCACTAAAACTTGCAACAAAAGGCTTTACCATAACATTTATCAACACAAAGTATAGCCATGCCCAAATAACCAAATCACAAAAATTAGACCAAACTCATAACATATTTGCAAAATTTCAAGAACTTGGCCTTGACATACATTATCAAACAGTTTGTGATGGTTTTCCCTTAGAATTCGATCGATTTTCGGGGTCGAATACCGAGAAGTTTTGGGAAGGATTTTTACTAAATTACCCTTTTCATGTTGATGAAATTGTTGGGAAGTTAGTAGAATTGGATAGCCCTAGGCCAACTTGTTTGATTGTTGACACTTTCTATGGTTGGGGGACAACAATTGCTAATAAGTATGGACTTGTTAGTGTTTCATTCTTCACTCAACCTGCCTTGGTGTTTACTATAGACTATCATCTTGACCTTTTGCTCAAAAATGGTCATTTTGGCTAAATTGGTAAAGTTTCATTCTACCACTTTGTCTCTCTATTGTTCAGGCTCGTAAAAAAATGTTATCTTATTTGTGTCTGATATGATCCTCTATACTAGATTGGCTTTGAAAGATCTGATACACACCCTTCGACATTTTTCTAGAGTACGAGAGTAACATATATCACATGTTCATACAAAATTATTTACTTGTATTGATCAACTAACTTATAAGATAGTAGTAATTTCACTTCTTTTTTTTTTCTCTAAACAATAACACCATTTATGTACCGGAAATTTTTTGTTGGATTATTGGGTAGTGTAAAAATTCCTTACAATTAATTTGATTAAGTAAAAACAAAAATTTGAACAATCCACCTTTGCTATAACACGTTAGAATACACTGATCGTGTAAAAATACTTTACACTACGCAGGGGTATGAATAAGATTAAGATATATGAACTTTCTACGTCCTTAACCAAAGATCTAGTGTAAAAATACTTAAAAGGGATATTGGTTTCCCCTTTATTAGGGTCTACGTTGATCGAATCTCAATTAGTTGAGAAGTGCTAAATGGCCAGAAAATTTGGCCAAAAATTTTTAAAAACTATAATATCTTTTTTATTTAAAAAAAAAATCAATCTTTTTTTTTATTTTTTTAGTAAAAGGTATTAAAGATAAAAGGGTAAAAATGTTATAAAAAAGTAAAATTACATTAAAAAAATTTCATTTTGACCAAATTTTCTGGCCAAAAAGATTTTTCCATTCCGAATACCCTATAGTTATTATATATGAAAAAAAAAAAACTTACATTATTTATGTTTAATTAACTTCATTATGATGTTGATTACTAGGCTAACTTTTGCTATTTTTTAATTTTTTTAAATGATGTTGATTACTAGGCTAACTTTTGCTACTTTTTTTTTTTATTTTTTTAGATAATAGGAAGGATACCATATATTCTATACCAGGAATTTCAGCAATTGATCCAAGTGATTTACCTTCATATTTACAAACAAAAGAGACATCAACTATTCTTCATCAAATTATCTACAAAGGTTTTGAAGAAGCCAAGAAATCAGACATTATAATTTGTAACACAATACAAGAACTTGAATCCAAAGTAATTTCAATATTCCAAGAAAAAACAAAAAAACCC-TTTTTTGCTATTGGTCCAATTTTTCATGATCATCAAGTCAA</genome_strand>
        <mrna_strand>AAGCAACCAAAAACCTCATGCAATAGTAATTCCATGCCCATTTCAAGGCCACATAAACCCTAGTATTCACCTTTCACTAAAACTTGCAACAAAAGGCTTTACCATAACATTTATCAACACAAAGTATAGCCATGCCCAAATAACCAAATCACAAAAATTAGACCAAACTCATAACATATTTGCAAAATTTCAAGAACTTGGCCTTGACATACATTATCAAACAGTTTGTGATGGTTTTCCCTTAGAATTCGATCGATTTTCGGTGTCGAATACCGAGAAGTTTTGCGAAGGATTTTTACTAAATTACCCTTTTCATGTTGATGAAATTGTTGGGAAGTTAGTAGAATTGGATAGCCCTAGGCCAACTTGTTTGATTGTTGACACTTTCTATGGTTGGGGGACAACAATTGCTAATAAGTATGGACTTGTTAGTGTTTCATTCTTCACTCAACCTGCCTTGGTGTTTACTATAGACTATCATCTTGACCTTTTGCTCAAAAATGGTCATTTTGGCTCAATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAAAGGATACCATATATTATCTACCAGGAATTTCAGCAATTGATCCAAGTGATTTACCTTCATATTTACAAACAAAAGAGACATCAACTATTCTTCATCAAATTATCTACAAAGGTTTTGAAGAAGCCAAG-AATCAGACATTATAATTTGTAACACAATACAAGAACTTGAAATCAAAGTAATTTCAATATTCCAAGAAAAAACAAAAAAACCCTTTTTTTGCTATTGGTCCATTTTTTCATGATCATCAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355913" ref_strand="+" ref_description="SGN-E355913 [cLHT-12-N2]">
      <seq>agcaaccaaaaacctcatgcaatagtaattccatgcccatttcaaggccacataaaccctagtattcacctttcactaaaacttgcaacaaaaggctttaccataacatttatcaacacaaagtatagccatgcccaaataaccaaatcacaaaaattagaccaaactcataacatatttgcaaaatttcaagaacttggccttgacatacattatcaaacagtttgtgatggttttcccttagaattcgatcgattttcggtgtcgaataccgagaagttttgcgaaggatttatactaaattacccttttcatgttgatgaaattgttgggaagttagtagaattggatagccctaggccaacttgtttgattgttgacactttctatggttgggggacaacaattgctaataagtatggacttgttagtgtttcattcttcactcaacctgccttggtgtttactatagactatcatcttgaccttttgctcaaaaatggtcattttggctcaattgataatagaaaggataccatatattatctaccaggaatttcagcaattgatccaagtgatttaccttcatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="98538" stop="96434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98238" g_stop="97719" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97718" i_stop="96808" i_length="911">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96807" g_stop="96734" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="594" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E355913" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98238" e_stop="97719"/>
          <exon e_start="96807" e_stop="96734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACCAAAAACCTCATGCAATAGTAATTCCATGCCCATTTCAAGGCCACATAAACCCTAGTATTCACCTTTCACTAAAACTTGCAACAAAAGGCTTTACCATAACATTTATCAACACAAAGTATAGCCATGCCCAAATAACCAAATCACAAAAATTAGACCAAACTCATAACATATTTGCAAAATTTCAAGAACTTGGCCTTGACATACATTATCAAACAGTTTGTGATGGTTTTCCCTTAGAATTCGATCGATTTTCGGGGTCGAATACCGAGAAGTTTTGGGAAGGATTTTTACTAAATTACCCTTTTCATGTTGATGAAATTGTTGGGAAGTTAGTAGAATTGGATAGCCCTAGGCCAACTTGTTTGATTGTTGACACTTTCTATGGTTGGGGGACAACAATTGCTAATAAGTATGGACTTGTTAGTGTTTCATTCTTCACTCAACCTGCCTTGGTGTTTACTATAGACTATCATCTTGACCTTTTGCTCAAAAATGGTCATTTTGGCTAAATTGGTAAAGTTTCATTCTACCACTTTGTCTCTCTATTGTTCAGGCTCGTAAAAAAATGTTATCTTATTTGTGTCTGATATGATCCTCTATACTAGATTGGCTTTGAAAGATCTGATACACACCCTTCGACATTTTTCTAGAGTACGAGAGTAACATATATCACATGTTCATACAAAATTATTTACTTGTATTGATCAACTAACTTATAAGATAGTAGTAATTTCACTTCTTTTTTTTTTCTCTAAACAATAACACCATTTATGTACCGGAAATTTTTTGTTGGATTATTGGGTAGTGTAAAAATTCCTTACAATTAATTTGATTAAGTAAAAACAAAAATTTGAACAATCCACCTTTGCTATAACACGTTAGAATACACTGATCGTGTAAAAATACTTTACACTACGCAGGGGTATGAATAAGATTAAGATATATGAACTTTCTACGTCCTTAACCAAAGATCTAGTGTAAAAATACTTAAAAGGGATATTGGTTTCCCCTTTATTAGGGTCTACGTTGATCGAATCTCAATTAGTTGAGAAGTGCTAAATGGCCAGAAAATTTGGCCAAAAATTTTTAAAAACTATAATATCTTTTTTATTTAAAAAAAAAATCAATCTTTTTTTTTATTTTTTTAGTAAAAGGTATTAAAGATAAAAGGGTAAAAATGTTATAAAAAAGTAAAATTACATTAAAAAAATTTCATTTTGACCAAATTTTCTGGCCAAAAAGATTTTTCCATTCCGAATACCCTATAGTTATTATATATGAAAAAAAAAAAACTTACATTATTTATGTTTAATTAACTTCATTATGATGTTGATTACTAGGCTAACTTTTGCTATTTTTTAATTTTTTTAAATGATGTTGATTACTAGGCTAACTTTTGCTACTTTTTTTTTTTATTTTTTTAGATAATAGGAAGGATACCATATATTCTATACCAGGAATTTCAGCAATTGATCCAAGTGATTTACCTTCATATTTA</genome_strand>
        <mrna_strand>AGCAACCAAAAACCTCATGCAATAGTAATTCCATGCCCATTTCAAGGCCACATAAACCCTAGTATTCACCTTTCACTAAAACTTGCAACAAAAGGCTTTACCATAACATTTATCAACACAAAGTATAGCCATGCCCAAATAACCAAATCACAAAAATTAGACCAAACTCATAACATATTTGCAAAATTTCAAGAACTTGGCCTTGACATACATTATCAAACAGTTTGTGATGGTTTTCCCTTAGAATTCGATCGATTTTCGGTGTCGAATACCGAGAAGTTTTGCGAAGGATTTATACTAAATTACCCTTTTCATGTTGATGAAATTGTTGGGAAGTTAGTAGAATTGGATAGCCCTAGGCCAACTTGTTTGATTGTTGACACTTTCTATGGTTGGGGGACAACAATTGCTAATAAGTATGGACTTGTTAGTGTTTCATTCTTCACTCAACCTGCCTTGGTGTTTACTATAGACTATCATCTTGACCTTTTGCTCAAAAATGGTCATTTTGGCTCAATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAAAGGATACCATATATTATCTACCAGGAATTTCAGCAATTGATCCAAGTGATTTACCTTCATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342812" ref_strand="+" ref_description="SGN-E342812 [cTOF-7-L11]">
      <seq>aaaaatgttgctttcagtgacaaatcgcagtgttcatccagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatatattggacagactctttaggaccgctagaactggacgctccttcatgtagatatcatagtgaagacataactctgagtgatagtcttggtggttttaaccgcctcatagttaacagtctagatgcattccaaaattgctcgttctttgggttggacaaaacagagcctggatctactgttgaacctgtaaagacttcagatttgaagatcggcgctgaagtctaagcttctcgactaaaaaacttagttcggctaactttataggtatctctcaacaatctcaagtccagaatttcgtgcatgtgtgcaacgcgcaagtatgcatagcactttaaaagagaaaaaaaggttgaaatgggacaaaggttccctctctaatgtacaaaatataactctngagagtacttcaggtgtctctgaatgtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101160" stop="99704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100860" g_stop="100750" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100544" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="243" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.512" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100425" g_stop="100004" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="665" r_length="422" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E342812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100860" e_stop="100750"/>
          <exon e_start="100675" e_stop="100544"/>
          <exon e_start="100425" e_stop="100004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGGGTAAATCTTTCCTGCCTTTCTGCTATTAGTGATGTTTGCATCATTTATATATACAGCCATATAGTGTGTCAGCTTTAAGGGCATGTGTTTACCGAGTTCATCTCTTTCAACTCTGCAGACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAACTTAGTTCGGCTAACTTTATAGGTATGTCTCAACAATCTCAAGTCCAGAATTTCGTGCATGTGTGCAACGCGCAAGTATGCATAGCACTTTAAAAGAGAAAAAAAGGTTGAAATGGGACAAAGGTTCCCTCTCTAATGTACAAAATATAACTCTTGAGAGTACTTCAGGTGTCTCTGAATGTGTGT</genome_strand>
        <mrna_strand>AAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG......................................................................................................................ACAGACTCTTTAGGACCGCTAGAACTGGACGCTCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAACTTAGTTCGGCTAACTTTATAGGTATCTCTCAACAATCTCAAGTCCAGAATTTCGTGCATGTGTGCAACGCGCAAGTATGCATAGCACTTTAAAAGAGAAAAAAAGGTTGAAATGGGACAAAGGTTCCCTCTCTAATGTACAAAATATAACTCTNGAGAGTACTTCAGGTGTCTCTGAATGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261965" ref_strand="+" ref_description="SGN-E261965 [cLEG-58-G24]">
      <seq>tcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcagtgacaaatcgcagtgttcatccagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatatattggacagactctttaggaccgctagaactggacgctccttcatgtagatatcatagtgaagacataactctgagtgatagtcttggtggttttaaccgcctcatagttaacagtctagatgcattccaaaattgctcgttctttgggttggacaaaacagagcctggatctactgttgaacctgtaaagacttcagatttgaagatcggcgctgaagtctaagcttctcgactaaaaaacttagttcggctaactttataggtatctctcaacaatctcaagtccagaatttcgtgcatgtgtgcaacgcgcaagtatgcatagcattttaaaagagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101289" stop="99787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100989" g_stop="100750" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100544" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.512" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100425" g_stop="100087" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="711" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E261965" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100989" e_stop="100750"/>
          <exon e_start="100675" e_stop="100544"/>
          <exon e_start="100425" e_stop="100087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGGGTAAATCTTTCCTGCCTTTCTGCTATTAGTGATGTTTGCATCATTTATATATACAGCCATATAGTGTGTCAGCTTTAAGGGCATGTGTTTACCGAGTTCATCTCTTTCAACTCTGCAGACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAACTTAGTTCGGCTAACTTTATAGGTATGTCTCAACAATCTCAAGTCCAGAATTTCGTGCATGTGTGCAACGCGCAAGTATGCATAGCACTTTAAAAGAGAAAAA</genome_strand>
        <mrna_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG......................................................................................................................ACAGACTCTTTAGGACCGCTAGAACTGGACGCTCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAACTTAGTTCGGCTAACTTTATAGGTATCTCTCAACAATCTCAAGTCCAGAATTTCGTGCATGTGTGCAACGCGCAAGTATGCATAGCATTTTAAAAGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262159" ref_strand="+" ref_description="SGN-E262159 [cLEG-58-N13]">
      <seq>tcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcagtgacaaatcgcagtgttcatccagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatatattggacagactctttaggaccgctagaactggacgctccttcatgtagatatcatagtgaagacataactctgagtgatagtcttggtggttttaaccgcctcatagttaacagtctagatgcattccaaaattgctcgttctttgggttggacaaaacagagcctggatctactgttngacctgtaaagacttcagatttgaagatcggcgctgaagtctaagcttctcgactaaaaaaacttagttcggctaactttataggtatctctcaacaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101289" stop="99850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100989" g_stop="100750" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100544" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.512" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100425" g_stop="100150" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="649" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E262159" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100989" e_stop="100750"/>
          <exon e_start="100675" e_stop="100544"/>
          <exon e_start="100425" e_stop="100150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGGGTAAATCTTTCCTGCCTTTCTGCTATTAGTGATGTTTGCATCATTTATATATACAGCCATATAGTGTGTCAGCTTTAAGGGCATGTGTTTACCGAGTTCATCTCTTTCAACTCTGCAGACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACT-AAAAAACTTAGTTCGGCTAACTTTATAGGTATGTCTCAACAATCTC</genome_strand>
        <mrna_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG......................................................................................................................ACAGACTCTTTAGGACCGCTAGAACTGGACGCTCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTNGACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAAACTTAGTTCGGCTAACTTTATAGGTATCTCTCAACAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258580" ref_strand="+" ref_description="SGN-E258580 [cLEG-47-D22]">
      <seq>tcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcagtgacaaatcgcagtgttcatccagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatatattggacagactctttaggaccgctagaactggacgctccttcatgtagatatcatagtgaagacataactctgagtgatagtcttggtggttttaaccgcctcatagttaacagtctagatgcattccaaaattgctcgttccttgggatggacaacacagagcctggatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101289" stop="99957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100989" g_stop="100750" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100544" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.512" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100425" g_stop="100257" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="541" r_length="169" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E258580" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100989" e_stop="100750"/>
          <exon e_start="100675" e_stop="100544"/>
          <exon e_start="100425" e_stop="100257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGGGTAAATCTTTCCTGCCTTTCTGCTATTAGTGATGTTTGCATCATTTATATATACAGCCATATAGTGTGTCAGCTTTAAGGGCATGTGTTTACCGAGTTCATCTCTTTCAACTCTGCAGACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTA</genome_strand>
        <mrna_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG......................................................................................................................ACAGACTCTTTAGGACCGCTAGAACTGGACGCTCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCCTTGGGATGGACAACACAGAGCCTGGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256010" ref_strand="+" ref_description="SGN-E256010 [cLEG-35-F23]">
      <seq>tcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcagtgacaaatcgcagtgttcatccagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatatattggacagactctttaggaccgctagaactggacgctccttcatgtagatatcatagtgaagacataactctgagtgatagtcttggtggttttaaccgcctcatagttaacagtctagatgcattccaaaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101289" stop="99992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100989" g_stop="100750" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100544" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.512" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100425" g_stop="100292" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="506" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E256010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100989" e_stop="100750"/>
          <exon e_start="100675" e_stop="100544"/>
          <exon e_start="100425" e_stop="100292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGGGTAAATCTTTCCTGCCTTTCTGCTATTAGTGATGTTTGCATCATTTATATATACAGCCATATAGTGTGTCAGCTTTAAGGGCATGTGTTTACCGAGTTCATCTCTTTCAACTCTGCAGACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTC</genome_strand>
        <mrna_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG......................................................................................................................ACAGACTCTTTAGGACCGCTAGAACTGGACGCTCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252556" ref_strand="+" ref_description="SGN-E252556 [cLEG-20-P20]">
      <seq>tcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcaggacaatcgcaggcatcagcaatgttggtgcagagaattcccagcggattgctcagtcatcttccctggtattggatgcagtaatcaaggatttgcctgggaacatggagtcctttaacggtgaacctgctcatgatgacgcagtggatgagtgtcaatcggatgcacaggcgttggatggttcttcaaaggatcttaatgggctctctggcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="101289" stop="100248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100989" g_stop="100750" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100675" g_stop="100548" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="362" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E252556" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100989" e_stop="100750"/>
          <exon e_start="100675" e_stop="100548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAGGTAGAATCTCATGAAAAATCACTTTGTGCTAGTTCAATATGGAGCGTATTCATCATTTTTTATTTCTTTTGCAGGATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATA</genome_strand>
        <mrna_strand>TCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAG-GAC-AATCGCAG-G--CAT-CAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG..........................................................................GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708127" ref_strand="+" ref_description="SGN-E708127 [FA34DF12]">
      <seq>cgcttactctaagtaatcgaaaaaagatgtcatccgttttggagcatctcaatcgtaaatggggaagttcgagcatagcaactggagaactggtgctttttccttaccatgtacagatggaaaacctggtgcaatccctgagatggaccaaagataccacacagagtgcggctgatgtgcataatctgatcggaagccctccagtttttcgtctcagatatggttggtttccaaatgctgagcttggaacacctcttgaactattgtcatctgccattccgtttatgcaaaatattaaccctaacatcacaaatgaaaataatgcggaaatactagcatcatcccctggtaaacttgtacgattttctaaagaaccactagcttctaacccaagaatgactgtgacatcctcctcaatcaagctgtctggtgagtcaaacttgcaagcaagcatgggtctaaatacctacacttatgatcatgatggaactctgccattgaatagaagggagaatggggatgcaaccacagcagaacaagctgagatgcatgatatgcagggaagcaaggccagtgctttgtcggcaggggattgggaagatagccttaccaacataagtgtcggagatcttctctttgatgcacctgatgatgaggaaacagactgtattgactcagctttgtgcggaagctctcattttctctcacagatgccattaagctgtgactcgtttgatgcagcgattgctgctcatatatataaacatcaaagcaaagctgattctcagatggctcttccacctcaagcatcttccatttggaatgctgaagatacatgtgatgcttttgcattcaagaaaaatgttgctttcagtgacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="103315" stop="100536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103016" g_stop="102800" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102799" i_stop="102715" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102714" g_stop="102384" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="548" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102383" i_stop="101170" i_length="1214">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101169" g_stop="100836" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="882" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E708127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103016" e_stop="102800"/>
          <exon e_start="102714" e_stop="102384"/>
          <exon e_start="101169" e_stop="100836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGACCAAAGATACCACACAGAGTGCGGCTGATGTGCATAATCTGATCGGAAGCCCTCCAGTTTTTCGTCTCAGGTCCATGTTTTACGTTTTCTTTTTTATCTTTCAGAATATTATTTCTACAATAGTCGTGGGACTGATTTATTTATCCTTCTTTTAGATATGGTTGGTTTCCAAATGCTGAGCTTGGAACACCTCTTGAACTATTGTCATCTGCCATTCCGTTTATGCAAAATATTAACCCTAACATCACAAATGAAAATAATGCGGAAATACTAGCATCATCCCCTGGTAAACTTGTACGATTTTCTAAAGAACCACTAGCTTCTAACCCAAGAATGACTGTGACATCCTCCTCAATCAAGCTGTCTGGTGAGTCAAACTTGCAAGCAAGCATGGGTCTAAATACCTACACTTATGATCATGATGGAACTCTGCCATTGAATAGAAGGGAGAATGGGGATGCAACCACAGCAGAACAAGCTGAGATGGTATTTTTTTTCTGTAGTTCCATTCTCATTCTGGCTTCATTTGCTTAATAGAAACTCAGAGAACTGGCAATTCAGTTGAATTACTTTTGGCTCTTTTACTTTCAGCTTATCCTTATGTTTGCTTTTATTGTCTGCATTTTTGAGTGATGAATAAAGTCATAGCACTCCTTTCAACGTTACCAATTTTTTCTAAGAAGGGTCATAACACACCTTTCTGAAACTTACTGAGTTGTCCTATTACATGATGAACTTCAGCAAACTTGGTTGTCAGCTTTATAGGTGAGATATGTTGAAGACCACCTCATCTTGATGATGCAATAGCTTATTAAGGAAACAATTTTAGGTACAAATTTTTAAAGAGATGGTTGGCGATTTTGTCTAAGGTAGGAATCAAAGTAAAATCTGCTGGAAAATCATGTCGAAGAGGATAAGGACTTCCATAGGAAGAAACCACCTATTTGAGGTTGCATCCCAGGAGAGGTCATTTATAAAGGAGGGCACTTATCATGAAGATATGTTGATATGATCAGGGAGCAAATTATTGACAAAATTGGTCCAAGTAGAAAACCAGCCTACTTTAAGCTCACTGCTCTAGAGGGAGTGATTGAGGGGATCTAGGAACCAAGTGTTATTCCCAATTTAGACTGGACTGATCCTCTGCTGCTGTCTTGAGAAGTTTGTCCCGTGAAAAATATTTGAGTTAATTTTTACAGTCTAATTTATTCGAAAGATTGCCCAAAGGCTAAAAGCCTGAGTAGTTGATCCGGATATCTCTAAAATGATCAGTAAAATCCCTCCTGTTAAATTACCCATTGCAGAAGGAGCACTATTAGATAATAAGAAATTGTCCCCTTCAGATCAGCCATTAAAGAACTGGTACTCAGTACCCGATTTAGTGAAACTCAAGGGATATTGTAATACATTCTTCACTTAGCTCGTTTGTGTCTGATCGGTAAATAAAGCTATCAGTTTCGAATTCATGCCAATACAATGATTGTGTAAAACATGTTTTACTTGTTGGGGAGAAATTGAAGTCCTATCTTCAAATGTTCAAGTTGAAGCAAATGGATTTTGAGGTTCTCCCTGTTTGATTCTTTTTTCTTTTGGGATGTGTGTTGAAGGGATGTTTTGGAAGGATGTTGGATTGCATATCAATGAATTAGTTGCGAGTTGCTCATTATTCTTTTCCTGAATTTTTACTTGCTTCCTATTAGCATGATATGCAGGGAAGCAAGGCCAGTGCTTTGTCGGCAGGGGATTGGGAAGATAGCCTTACCAACATAAGTGTCGGAGATCTTCTCTTTGATGCACCTGATGATGAGGAAACAGACTGTATTGACTCAGCTTTGTGCGGAAGCTCTCATTTTCTCTCACAGATGCCATTAAGCTGTGACTCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAAT</genome_strand>
        <mrna_strand>CGCTTACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGACCAAAGATACCACACAGAGTGCGGCTGATGTGCATAATCTGATCGGAAGCCCTCCAGTTTTTCGTCTCAG.....................................................................................ATATGGTTGGTTTCCAAATGCTGAGCTTGGAACACCTCTTGAACTATTGTCATCTGCCATTCCGTTTATGCAAAATATTAACCCTAACATCACAAATGAAAATAATGCGGAAATACTAGCATCATCCCCTGGTAAACTTGTACGATTTTCTAAAGAACCACTAGCTTCTAACCCAAGAATGACTGTGACATCCTCCTCAATCAAGCTGTCTGGTGAGTCAAACTTGCAAGCAAGCATGGGTCTAAATACCTACACTTATGATCATGATGGAACTCTGCCATTGAATAGAAGGGAGAATGGGGATGCAACCACAGCAGAACAAGCTGAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATATGCAGGGAAGCAAGGCCAGTGCTTTGTCGGCAGGGGATTGGGAAGATAGCCTTACCAACATAAGTGTCGGAGATCTTCTCTTTGATGCACCTGATGATGAGGAAACAGACTGTATTGACTCAGCTTTGTGCGGAAGCTCTCATTTTCTCTCACAGATGCCATTAAGCTGTGACTCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261143" ref_strand="+" ref_description="SGN-E261143 [cLEG-65-P3]">
      <seq>tctgcttcaacagctgcatacaaaaggtgggagaaggctgcaattgctggagtttcattggtagctgatgcagcagaacatttggaacgagcaactattgataaagatgtcggactggtccagaattcgcaggctataaatggttttgaacatgttggcaaaaatgtgcattctttgccgactttatcccaaaatctgctaaacgagactaatttacagagttgtatgaaactcaagctccagctgtttcctgttgatgaaggaactagatgatccctggaaatggataatcataacccttacttggagctcactctaagtaatcgaaaaaagatgtcatccgttttggagcatctcaatcgtaaatggggaagttcgagcatagcaactggagaactggtgctttttccttaccctgtacagatggaaaacctggtgcaatccctgagatggaccaaagataccacacggagtgcggctgatgtgcataatctgatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="103819" stop="102524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103519" g_stop="103387" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103386" i_stop="103289" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103288" g_stop="103137" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="285" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103136" i_stop="103039" i_length="98">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103038" g_stop="102824" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="500" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E261143" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103519" e_stop="103387"/>
          <exon e_start="103288" e_stop="103137"/>
          <exon e_start="103038" e_stop="102824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCATCAACAGCTGCATACAAAAGGTGGGAGAAGGCTGCAATTGCTGGAGTTTCATTGGTAGCTGATGCAGCAGAACATTTGGAACGAGCAACTATTGATAAAGATGTCGGACTGGTCCAGAATTCGCAGGGTGGGTAGTTAATTGAAGCTTTCTTGTTCCCATTAAGGGTTGTTGATTCCGTCAAATGCATCTAACTTGCAGCTATCCTTTATATGAATAACTTGCAGCTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGTTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGAAGATCCCTGGAAATGGTAGGTTAAGTAAATCTCTTTGCTGTTCTGTCATTAATTGGTTATAACATCTGATGTAAAACTTATTTGCCATCACTTCTCTTTCCATTCTGTGTCAGGATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGACCAAAGATACCACACAGAGTGCGGCTGATGTGCATAATCTGATCGG</genome_strand>
        <mrna_strand>TCTGCTTCAACAGCTGCATACAAAAGGTGGGAGAAGGCTGCAATTGCTGGAGTTTCATTGGTAGCTGATGCAGCAGAACATTTGGAACGAGCAACTATTGATAAAGATGTCGGACTGGTCCAGAATTCGCAGG..................................................................................................CTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGCTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGATGATCCCTGGAAATG..................................................................................................GATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCCTGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGACCAAAGATACCACACGGAGTGCGGCTGATGTGCATAATCTGATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332433" ref_strand="+" ref_description="SGN-E332433 [cTOD-17-B11]">
      <seq>ctgcatggacacgtcaggaggaagaaagctttttctctgcactgcgacaagttgggaagaattttgagaaaattactagtcgcgtgcagagcaaaaacaaggatcaggtcagacattattattatcgtctagtgaggcgtatgaacaagttgttgggtccagaactttgtcttgatgccaaaaattccaaggatactaatgctgcaatgttgcgatggtggtctttactggaaaaatatagctgtaaagcctcaaagcttcatttgaaaccacggaggtttaaaatatttattgaaactttggagagtcagctgttgaaagaccggaaaaagaatgtaagaaggcgtccttctcaaggagaaagtagttctacagctgctggatctccttcaagtcatggcagagtgtcaactaatgatagtcggacagttaaagtggttcttcttgacaaccaggatgtacagaaatttggatctggaaaaggctcttctataaaacgccatgtcatgggtgtcaatagaagcaatgcaaaagtagactcttctgtgaaaaatgctagacatcgccgaaggacaggttctgcatcaacagctgcatacaaaaggtgggagaaggctgcaattgctggagtttcattggtagctgatgcagcagaacatttggaacgagncactatttgataagatgtcggactggtccagaattcgcaggctataaatggttttgaacatgttggncaaaatgtgcattctttgccgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0116C14-Kce7P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0116C14.2" temp_strand="-" temp_description="C09HBa0116C14.2  EF647604.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0116C14 upload_account_name:spain">
        <position start="105753" stop="102938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105453" g_stop="105395" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105394" i_stop="105286" i_length="109">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105285" g_stop="105238" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="107" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105237" i_stop="105120" i_length="118">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105119" g_stop="105010" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="217" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105009" i_stop="104545" i_length="465">
            <donor d_prob="0.320" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104544" g_stop="104460" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104459" i_stop="104358" i_length="102">
            <donor d_prob="0.459" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104357" g_stop="104084" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="576" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104083" i_stop="103522" i_length="562">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103521" g_stop="103387" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="711" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103386" i_stop="103289" i_length="98">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103288" g_stop="103238" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="762" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0116C14.2" gen_strand="-" ref_id="SGN-E332433" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0116C14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105453" e_stop="105395"/>
          <exon e_start="105285" e_stop="105238"/>
          <exon e_start="105119" e_stop="105010"/>
          <exon e_start="104544" e_stop="104460"/>
          <exon e_start="104357" e_stop="104084"/>
          <exon e_start="103521" e_stop="103387"/>
          <exon e_start="103288" e_stop="103238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATGGACACGTCAGGAGGAAGAAAGCTTTTTCTCTGCACTGCGACAAGTTGGGAAGGTAATTCACTATTTTGGTGTTATATACAGGCATAAAGCTGGCTTCCTCTTTTGTTTTATTTTTCTTGTGGGATCAATACTTACTGTGGTTGCGGCACTTTCTTTTTCAGAATTTTGAGAAAATTACTAGTCGCGTGCAGAGCAAAAACAAGGATCAGGTGATATATGGCAAGATGTATTTATTTATTTACTTATCCACATATCTTTTCTTCTACGCTTTTTGCTTCACTTATCTTTTTTTTTTTTTTGAACATATCTATTCCTTTGATTTGGCAGGTCAGACATTATTATTATCGTCTAGTGAGGCGTATGAACAAGTTGTTGGGTCCAGAACTTTGTCTTGATGCCAAAAATTCCAAGGATACTAATGCTGCAATGTTGCGATGGTATGTGGTAGCCGTTATCTAGTCATTGATCTCTCTCACGGTTGTTTCAAACTGATGAAACTATTGGCTTGAAATTTTTTGTGCTATTTCATTAGCAGCACGATCCTCTTTTGGTCCATTTTTTATGACATAGAAGCAGGGTTTGCATTAAATGTAAGGATGGTGTTGTGTGTGAAGAAATGAAGTTATGAGATCAGTGCTGTCCTTTTTTAAGCTTTTAAAATGTAGTGTTTTTTTCTGTGATAATTATGCATTAGACGCATGCTATACTTGTACGTCTTTCCTATGGTGAAGTAAACCAGCAATATATCCTATTTGCTGGTTTGGAGGAGTAAACCACGAACTTTGTCTTATTCACAACAAAATCTATTTTGTAAACTTGGAGCAAAATGTAGCTTAGTTGTGACACTTGTTCATGTTAGTAGCTCCTTCTAATGATATAGCTAAATTTGACTTTGTCTGTAGGTGGTCTTTACTGGAAAAATATAGCTGTAAAGCCTCAAAGCTTCATTTGAAACCACGGAGGTTTAAAATATTTATTGAAACTTTGGTCAGTCAAAAGCTCAACTTTTCGTCCTTTATAACACTCCATGTTTCAGCATGATTTCTTACATTTTTAGCTGGGACTGAAGTACATTATATTGTCATAAAGGAGAGTCAGCTGTTGAAAGACCGGAAAAAGAATGTAAGAAGGCGTCCTTCTCAAGGAGAAAGTAGTTCTACAGCTGCTGGATCTCCTTCAAGTCATGGCAGAGTGTCAACTAATGATAGTCGGACAGTTAAAGTGGTTCTTCTTGACAACCAGGATGTACAGAAATTTGGATCTGGAAAAGGCTCTTCTATAAAACGCCATGTCATGGGTGTCAATAGAAGCAATGCAAAAGTAGACTCTTCTGTGAAAAATGCTAGACATCGCCGAAGGACAGGTTTGTTGTTTATAAAGTTCATGAATGAATTACATTTGTTGCTTCTTTGGCTTTTATGCTTTCCCTGCATCCTTTTACAAAGCATATGTTAGAGATATACATTGCTTCATATTGGATATGTTTGGGTATAAGTGGATTTTAAAGGTCTTAGGCTACTACTCTCTTTCCATATGTTTTGAGGTGGTTACTCAGATTCTCTTACATGTAGGAAGAATTATTCATGGTATGGACTATTATATAAGAATGAGTATAGATGTTTTACTTTTACATTGGAGTATTTGTTTTGTTCTCCTTACACTACTTCTAGATGGCTATATGGCATCATAAAAATATTTGACCTACATGTCATTGCAGTGGCAAGCCAACCCATTGTCTTCCTCCCACCCTCCATACCTTAATTGAGATGTTTAGAGGAGTGTTATTAGTGATATTTCTATGACTGATATAGTCTGCCTTACTGTTTTGGCTCTTTTTCTTTTAGTTGTTCTTTTGCTATTCATTTTCTTAAATAACAAAGCTATCTCTGAGCTCAATCCTCTGTTGTATTGTCTCTGGGTTGCAGGTTCTGCATCAACAGCTGCATACAAAAGGTGGGAGAAGGCTGCAATTGCTGGAGTTTCATTGGTAGCTGATGCAGCAGAACATTTGGAACGAGCAACTA-TTGATAAAGATGTCGGACTGGTCCAGAATTCGCAGGGTGGGTAGTTAATTGAAGCTTTCTTGTTCCCATTAAGGGTTGTTGATTCCGTCAAATGCATCTAACTTGCAGCTATCCTTTATATGAATAACTTGCAGCTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTT</genome_strand>
        <mrna_strand>CTGCATGGACACGTCAGGAGGAAGAAAGCTTTTTCTCTGCACTGCGACAAGTTGGGAAG.............................................................................................................AATTTTGAGAAAATTACTAGTCGCGTGCAGAGCAAAAACAAGGATCAG......................................................................................................................GTCAGACATTATTATTATCGTCTAGTGAGGCGTATGAACAAGTTGTTGGGTCCAGAACTTTGTCTTGATGCCAAAAATTCCAAGGATACTAATGCTGCAATGTTGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCTTTACTGGAAAAATATAGCTGTAAAGCCTCAAAGCTTCATTTGAAACCACGGAGGTTTAAAATATTTATTGAAACTTTG......................................................................................................GAGAGTCAGCTGTTGAAAGACCGGAAAAAGAATGTAAGAAGGCGTCCTTCTCAAGGAGAAAGTAGTTCTACAGCTGCTGGATCTCCTTCAAGTCATGGCAGAGTGTCAACTAATGATAGTCGGACAGTTAAAGTGGTTCTTCTTGACAACCAGGATGTACAGAAATTTGGATCTGGAAAAGGCTCTTCTATAAAACGCCATGTCATGGGTGTCAATAGAAGCAATGCAAAAGTAGACTCTTCTGTGAAAAATGCTAGACATCGCCGAAGGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCATCAACAGCTGCATACAAAAGGTGGGAGAAGGCTGCAATTGCTGGAGTTTCATTGGTAGCTGATGCAGCAGAACATTTGGAACGAGNCACTATTTGAT-AAGATGTCGGACTGGTCCAGAATTCGCAGG..................................................................................................CTATAAATGGTTTTGAACATGTTGGNCAAAATGTGCATTCTTTGCCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>63</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12021" PGL_stop="9168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12021" e_stop="11863"/>
            <exon e_start="10457" e_stop="10161"/>
            <exon e_start="9447" e_stop="9168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.475" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12021" e_stop="11863" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.475">
            <gDNA_intron_boundary i_start="11862" i_stop="10458" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10457" e_stop="10161" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="10160" i_stop="9448" i_length="713"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9447" e_stop="9168" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12021" stop="11863"/>
              <exon start="10457" stop="10161"/>
              <exon start="9447" stop="9168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAG : ACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAG : CTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</gDNA_template>
            <first_frame> Q  A  N  T  M  H  I  I  W  D  G  S  H  K  W  K  G  R  I  Y  P  L  I  Q  E  N  Y  R  F  C  C  P  R  *  Y  S  P  R  K  P  H  C  R  R  E  P  S  I  *  C  K  M  Q  :  T  S  C  R  L  A  K  G  *  *  G  S  C  S  R  E  S  Y  *  I  I  G  S  S  G  S  *  R  F  T  G  W  D  C  R  E  A  W  N  F  W  W  P  E  E  T  S  E  R  G  D  G  N  G  H  G  T  F  T  A  N  L  G  *  T  Y  I  W  F  R  Q  L  I  L  K  L  T  S  *  S  S  *  T  *  S  S  *  R  C  K  H  L  H  G  S  S  P  A  K  :  L  Y  L  V  Q  D  V  R  *  L  G  T  S  S  Q  R  W  S  C  C  I  S  R  P  C  E  E  S  R  R  I  L  C  K  S  G  N  R  S  T  R  S  C  K  S  S  *  P  F  H  *  R  P  *  G  Y  G  Q  T  R  W  R  C  D  R  G  T  T  S  C  P  M  D  A  S  *  W  L  P  C  T  P  R  Y  D  A  I  V  R  S  D  C  N  </first_frame>
            <second_frame>  K  L  T  Q  C  T  L  S  G  M  V  L  I  N  G  R  A  E  S  I  H  S  Y  K  R  I  T  G  F  V  A  Q  D  D  I  V  H  G  N  L  T  V  E  E  N  L  R  F  N  A  R  C  R :   L  A  A  D  L  P  K  A  D  K  V  L  V  V  E  R  V  I  E  S  L  G  L  Q  A  V  R  D  S  L  V  G  T  V  E  K  R  G  I  S  G  G  Q  R  K  R  V  N  V  G  M  E  M  V  M  E  P  S  L  L  I  L  D  E  P  T  S  G  L  D  S  S  S  S  N  L  L  L  K  A  L  R  R  E  A  L  E  G  V  N  I  C  M  V  L  H  Q  P  S :   Y  T  L  Y  K  M  F  D  D  L  V  L  L  A  K  G  G  L  V  A  Y  H  G  P  V  K  K  A  E  E  Y  F  A  N  L  G  I  A  V  P  D  R  V  N  P  P  D  H  F  I  D  V  L  E  G  M  V  K  P  G  G  G  V  T  V  E  Q  L  P  V  R  W  M  L  H  N  G  Y  P  V  P  P  D  M  M  Q  L  C  D  Q  I  A  M </second_frame>
            <third_frame>   S  *  H  N  A  H  Y  L  G  W  F  S  *  M  E  G  Q  N  L  S  T  H  T  R  E  L  Q  V  L  L  P  K  M  I  *  S  T  E  T  S  L  *  K  R  T  F  D  L  M  Q  D  A   : D  *  L  Q  T  C  Q  R  L  I  R  F  L  *  S  R  E  L  L  N  H  W  V  F  R  Q  L  E  I  H  W  L  G  L  *  R  S  V  E  F  L  V  A  R  G  N  E  *  T  W  G  W  K  W  S  W  N  L  H  C  *  S  W  M  N  L  H  L  V  *  T  A  H  P  Q  T  Y  F  L  K  L  L  D  V  K  L  L  K  V  *  T  F  A  W  F  F  T  S  Q   : A  I  P  C  T  R  C  S  M  T  W  Y  F  *  P  K  V  V  L  L  H  I  T  A  L  *  R  K  Q  K  N  T  L  Q  I  W  E  S  Q  Y  Q  I  V  *  I  L  L  T  I  S  L  T  S  L  R  V  W  S  N  Q  V  E  V  *  P  W  N  N  F  L  S  D  G  C  F  I  M  V  T  L  Y  P  Q  I  *  C  N  C  A  I  R  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12020" stop="11863"/>
                    <exon start="10457" stop="10161"/>
                    <exon start="9447" stop="9168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTQCTLSGMVLINGRAESIHSYKRITGFVAQDDIVHGNLTVEENLRFNARCRLAADLPKADKVLVVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTSGLDSSSSNLLLKALRREALEGVNICMVLHQPSYTLYKMFDDLVLLAKGGLVAYHGPVKKAEEYFANLGIAVPDRVNPPDHFIDVLEGMVKPGGGVTVEQLPVRWMLHNGYPVPPDMMQLCDQIAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17467" PGL_stop="16831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17467" e_stop="16942"/>
            <exon e_start="16861" e_stop="16831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17467" e_stop="16942" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16941" i_stop="16862" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16861" e_stop="16831" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17467" stop="16942"/>
              <exon start="16861" stop="16831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTTTGTGTTTTTGTTTTTTTTGTTTATATTTCCTATTCTATTGAAAAATTTCATCTTTTTGGTTCTTGGGTTGTTTCTATTTCCATTTTATTGAAGAAAAAAAATCATCTTTTTGGTTCTTTGTGTTGTTTCAGTTTTCTTGTAAAATATCCTTCATCCCTTGAAAAATTTCCACTTTTTGGCTTCTTGGGGTTGTTTCTATTTTTTAGTTTATTCAGTTTTATGTTTTATTTAGTGGTGGCATTAATCTTCTTTAGGAATTAATTTATTTGGAATATTAGATGAAATGGGTAAAGTTAGGATATGGTTACCCATTTATTATTTGTTTATGATTCTTGTTTTGGGTTTTTCTCCATGTGTTTGGTGTGCACCTCCTAGTAAACAAACTCCTCCTGCTAATGCTAATGCTAATCCTACTGCTGTGCCTGTTCTTGCATCTTTCATTTATGGCCAACTTGCAAATCTTACAAAAGTATTCCATAAGGATATCACCCAGGTTTTGGGATTTTGCATTGATGATGT : GGATGCTGAGTTGTTTGAGGCATTTAATTTT</gDNA_template>
            <first_frame> I  F  L  C  F  C  F  F  C  L  Y  F  L  F  Y  *  K  I  S  S  F  W  F  L  G  C  F  Y  F  H  F  I  E  E  K  K  S  S  F  W  F  F  V  L  F  Q  F  S  C  K  I  S  F  I  P  *  K  I  S  T  F  W  L  L  G  V  V  S  I  F  *  F  I  Q  F  Y  V  L  F  S  G  G  I  N  L  L  *  E  L  I  Y  L  E  Y  *  M  K  W  V  K  L  G  Y  G  Y  P  F  I  I  C  L  *  F  L  F  W  V  F  L  H  V  F  G  V  H  L  L  V  N  K  L  L  L  L  M  L  M  L  I  L  L  L  C  L  F  L  H  L  S  F  M  A  N  L  Q  I  L  Q  K  Y  S  I  R  I  S  P  R  F  W  D  F  A  L  M  M   : W  M  L  S  C  L  R  H  L  I   </first_frame>
            <second_frame>  S  F  C  V  F  V  F  F  V  Y  I  S  Y  S  I  E  K  F  H  L  F  G  S  W  V  V  S  I  S  I  L  L  K  K  K  N  H  L  F  G  S  L  C  C  F  S  F  L  V  K  Y  P  S  S  L  E  K  F  P  L  F  G  F  L  G  L  F  L  F  F  S  L  F  S  F  M  F  Y  L  V  V  A  L  I  F  F  R  N  *  F  I  W  N  I  R  *  N  G  *  S  *  D  M  V  T  H  L  L  F  V  Y  D  S  C  F  G  F  F  S  M  C  L  V  C  T  S  *  *  T  N  S  S  C  *  C  *  C  *  S  Y  C  C  A  C  S  C  I  F  H  L  W  P  T  C  K  S  Y  K  S  I  P  *  G  Y  H  P  G  F  G  I  L  H  *  *  C  :  G  C  *  V  V  *  G  I  *  F  </second_frame>
            <third_frame>   L  F  V  F  L  F  F  L  F  I  F  P  I  L  L  K  N  F  I  F  L  V  L  G  L  F  L  F  P  F  Y  *  R  K  K  I  I  F  L  V  L  C  V  V  S  V  F  L  *  N  I  L  H  P  L  K  N  F  H  F  L  A  S  W  G  C  F  Y  F  L  V  Y  S  V  L  C  F  I  *  W  W  H  *  S  S  L  G  I  N  L  F  G  I  L  D  E  M  G  K  V  R  I  W  L  P  I  Y  Y  L  F  M  I  L  V  L  G  F  S  P  C  V  W  C  A  P  P  S  K  Q  T  P  P  A  N  A  N  A  N  P  T  A  V  P  V  L  A  S  F  I  Y  G  Q  L  A  N  L  T  K  V  F  H  K  D  I  T  Q  V  L  G  F  C  I  D  D  V :   D  A  E  L  F  E  A  F  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17216" stop="16942"/>
                    <exon start="16861" stop="16831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLGINLFGILDEMGKVRIWLPIYYLFMILVLGFSPCVWCAPPSKQTPPANANANPTAVPVLASFIYGQLANLTKVFHKDITQVLGFCIDDVDAELFEAFNF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17466" stop="17200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFCVFVFFVYISYSIEKFHLFGSWVVSISILLKKKNHLFGSLCCFSFLVKYPSSLEKFPLFGFLGLFLFFSLFSFMFYLVVALIFFRN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17131" stop="16942"/>
                    <exon start="16861" stop="16833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFWVFLHVFGVHLLVNKLLLLMLMLILLLCLFLHLSFMANLQILQKYSIRISPRFWDFALMMWMLSCLRHLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18530" PGL_stop="23260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18536" e_stop="18681"/>
            <exon e_start="18806" e_stop="18873"/>
            <exon e_start="19216" e_stop="19261"/>
            <exon e_start="19381" e_stop="19447"/>
            <exon e_start="20365" e_stop="20775"/>
            <exon e_start="23080" e_stop="23260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.606" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.870" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18536" e_stop="18681" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.606" acc_prob="0.987">
            <gDNA_intron_boundary i_start="18682" i_stop="18805" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="18806" e_stop="18873" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.935" acc_prob="0.870">
            <gDNA_intron_boundary i_start="18874" i_stop="19215" i_length="342"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19216" e_stop="19261" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19381" e_stop="19447" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19448" i_stop="20364" i_length="917"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20365" e_stop="20775" e_length="411"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20776" i_stop="23079" i_length="2304"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="23080" e_stop="23260" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18536" stop="18681"/>
              <exon start="18806" stop="18873"/>
              <exon start="19216" stop="19261"/>
              <exon start="19381" stop="19447"/>
              <exon start="20365" stop="20761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19229" stop="19261"/>
              <exon start="19381" stop="19447"/>
              <exon start="20365" stop="20421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19230" stop="19261"/>
              <exon start="19381" stop="19447"/>
              <exon start="20365" stop="20775"/>
              <exon start="23080" stop="23133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20775"/>
              <exon start="23080" stop="23260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAG : GAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACTTTGTAGATG : ATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAG : GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATG : GGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAG : GGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAAAACCTCGTCAAATTAGTTGGCTACTGTGCAGAAGATGACGAGAGAGGAATTCAGCGGCTTTTGGTGTATGAATACATGCCTAACAGAAGTGTCGAAAACCATTTGTCAGCTAGGTCAGAAACCCCTC</gDNA_template>
            <first_frame> E  D  F  S  Q  V  I  *  S  L  C  H  L  *  Q  D  K  T  F  Y  W  S  *  K  F  Y  Q  V  P  N  S  T  A  I  F  D  K  N  Y  G  V  G  S  D  L  V  A  *  R :   N  C  K  I  *  A  F  D  Y  S  R  T  G  K  D  *  I  L  H  F  V  D   : D  *  D  K  V  Y  A  V  G  S  D  L  A  A  *  R :   N  C  K  I  G  L  L  A  I  Q  E  L  K  K  I  E  S  R  V  P  *  M  :  G  G  Y  F  S  S  I  L  K  D  M  K  C  F  P  F  Y  N  A  E  K  K  E  E  P  K  T  T  K  S  N  P  V  L  S  S  S  F  G  L  F  D  S  E  F  R  H  S  H  R  E  S  S  S  Q  N  V  S  D  T  S  S  E  S  R  G  R  S  Q  I  P  S  L  S  D  R  P  S  D  L  R  A  F  T  F  S  E  L  K  A  A  T  K  N  F  N  R  T  T  K  I  G  E  G  G  F  G  C  V  Y  K  A  T  V  K  T  G  E  D  S  S  K  K  I  D  V  A  I  K  Q  L  G  R  R  G  L  Q  :  G  H  K  E  W  V  T  E  V  N  V  L  G  V  A  E  H  K  N  L  V  K  L  V  G  Y  C  A  E  D  D  E  R  G  I  Q  R  L  L  V  Y  E  Y  M  P  N  R  S  V  E  N  H  L  S  A  R  S  E  T  P  </first_frame>
            <second_frame>  K  T  F  L  K  S  S  K  V  F  A  I  F  D  K  I  K  P  F  I  G  A  E  S  F  I  K  F  Q  I  V  L  Q  F  L  I  K  I  M  V  W  V  Q  I  *  *  L  K   : G  T  V  K  F  E  L  L  T  I  Q  E  L  E  K  I  E  S  C  T  L  *  M  :  I  E  I  K  F  M  L  W  V  Q  I  *  Q  P  K   : G  I  V  K  L  G  F  W  L  S  K  N  *  K  R  L  N  L  V  S  R  R  W :   E  G  I  L  V  A  Y  L  R  T  *  S  V  F  R  S  T  M  L  R  R  R  K  N  L  K  P  R  S  Q  I  Q  F  C  P  P  L  L  V  F  L  I  V  N  F  G  I  L  I  V  S  P  A  L  R  M  Y  Q  I  P  A  Q  S  L  E  E  G  A  K  F  Q  A  Y  Q  I  D  L  L  I  S  G  H  L  H  S  Q  N  *  K  Q  Q  Q  R  I  S  T  V  L  L  R  L  G  K  V  D  L  D  V  Y  I  R  P  Q  *  R  L  V  R  T  H  R  K  R  L  T  W  L  *  N  N  L  V  G  E  D  Y  R :   D  T  K  S  G  *  Q  K  S  M  F  S  V  L  L  N  I  K  T  S  S  N  *  L  A  T  V  Q  K  M  T  R  E  E  F  S  G  F  W  C  M  N  T  C  L  T  E  V  S  K  T  I  C  Q  L  G  Q  K  P  L </second_frame>
            <third_frame>   R  L  F  S  S  H  L  K  S  L  P  S  L  T  R  *  N  L  L  L  E  L  K  V  L  S  S  S  K  *  Y  C  N  F  *  *  K  L  W  C  G  F  R  F  S  S  L  K  :  E  L  *  N  L  S  F  *  L  F  K  N  W  K  R  L  N  L  A  L  C  R  * :   L  R  *  S  L  C  C  G  F  R  F  S  S  L  K  :  E  L  *  N  W  A  F  G  Y  P  R  T  E  K  D  *  I  S  C  P  V  D   : G  R  V  F  *  *  H  T  *  G  H  E  V  F  S  V  L  Q  C  *  E  E  G  R  T  *  N  H  E  V  K  S  S  S  V  L  L  F  W  S  F  *  *  *  I  S  A  F  S  S  *  V  Q  L  S  E  C  I  R  Y  Q  L  R  V  *  R  K  E  P  N  S  K  P  I  R  *  T  F  *  S  Q  G  I  Y  I  L  R  T  E  S  S  N  K  E  F  Q  P  Y  Y  *  D  W  G  R  W  I  W  M  C  I  *  G  H  S  K  D  W  *  G  L  I  E  K  D  *  R  G  Y  K  T  T  W  *  E  R  I  T   : G  T  Q  R  V  G  D  R  S  Q  C  S  R  C  C  *  T  *  K  P  R  Q  I  S  W  L  L  C  R  R  *  R  E  R  N  S  A  A  F  G  V  *  I  H  A  *  Q  K  C  R  K  P  F  V  S  *  V  R  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19445" stop="19447"/>
                    <exon start="20365" stop="20775"/>
                    <exon start="23080" stop="23259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGGYFSSILKDMKCFPFYNAEKKEEPKTTKSNPVLSSSFGLFDSEFRHSHRESSSQNVSDTSSESRGRSQIPSLSDRPSDLRAFTFSELKAATKNFNRTTKIGEGGFGCVYKATVKTGEDSSKKIDVAIKQLGRRGLQGHKEWVTEVNVLGVAEHKNLVKLVGYCAEDDERGIQRLLVYEYMPNRSVENHLSARSETP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20183" e_stop="20775"/>
            <exon e_start="23080" e_stop="23260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20183" e_stop="20775" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20776" i_stop="23079" i_length="2304"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="23080" e_stop="23260" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20183" stop="20630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20775"/>
              <exon start="23080" stop="23260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTTACTTTAACAAGGCATGTGAACTTTCCTGCTCCTTAAAGTCTTGGATAAATTTTGCAGGCATCAGTGTGATTAGATATTCAAATACGATATACTTCAGTACATTCCTAGTATTACCGATTTACCTTTATGTGAAATTACTTGAATATTAATTGACCATTCTGGTTGAACCTGCAGGGAGGGTATTTTAGTAGCATACTTAAGGACATGAAGTGTTTTCCGTTCTACAATGCTGAGAAGAAGGAAGAACCTAAAACCACGAAGTCAAATCCAGTTCTGTCCTCCTCTTTTGGTCTTTTTGATAGTGAATTTCGGCATTCTCATCGTGAGTCCAGCTCTCAGAATGTATCAGATACCAGCTCAGAGTCTAGAGGAAGGAGCCAAATTCCAAGCCTATCAGATAGACCTTCTGATCTCAGGGCATTTACATTCTCAGAACTGAAAGCAGCAACAAAGAATTTCAACCGTACTACTAAGATTGGGGAAGGTGGATTTGGATGTGTATATAAGGCCACAGTAAAGACTGGTGAGGACTCATCGAAAAAGATTGACGTGGCTATAAAACAACTTGGTAGGAGAGGATTACAG : GGACACAAAGAGTGGGTGACAGAAGTCAATGTTCTCGGTGTTGCTGAACATAAAAACCTCGTCAAATTAGTTGGCTACTGTGCAGAAGATGACGAGAGAGGAATTCAGCGGCTTTTGGTGTATGAATACATGCCTAACAGAAGTGTCGAAAACCATTTGTCAGCTAGGTCAGAAACCCCTC</gDNA_template>
            <first_frame> L  F  L  L  *  Q  G  M  *  T  F  L  L  L  K  V  L  D  K  F  C  R  H  Q  C  D  *  I  F  K  Y  D  I  L  Q  Y  I  P  S  I  T  D  L  P  L  C  E  I  T  *  I  L  I  D  H  S  G  *  T  C  R  E  G  I  L  V  A  Y  L  R  T  *  S  V  F  R  S  T  M  L  R  R  R  K  N  L  K  P  R  S  Q  I  Q  F  C  P  P  L  L  V  F  L  I  V  N  F  G  I  L  I  V  S  P  A  L  R  M  Y  Q  I  P  A  Q  S  L  E  E  G  A  K  F  Q  A  Y  Q  I  D  L  L  I  S  G  H  L  H  S  Q  N  *  K  Q  Q  Q  R  I  S  T  V  L  L  R  L  G  K  V  D  L  D  V  Y  I  R  P  Q  *  R  L  V  R  T  H  R  K  R  L  T  W  L  *  N  N  L  V  G  E  D  Y  R :   D  T  K  S  G  *  Q  K  S  M  F  S  V  L  L  N  I  K  T  S  S  N  *  L  A  T  V  Q  K  M  T  R  E  E  F  S  G  F  W  C  M  N  T  C  L  T  E  V  S  K  T  I  C  Q  L  G  Q  K  P  L </first_frame>
            <second_frame>  Y  F  Y  F  N  K  A  C  E  L  S  C  S  L  K  S  W  I  N  F  A  G  I  S  V  I  R  Y  S  N  T  I  Y  F  S  T  F  L  V  L  P  I  Y  L  Y  V  K  L  L  E  Y  *  L  T  I  L  V  E  P  A  G  R  V  F  *  *  H  T  *  G  H  E  V  F  S  V  L  Q  C  *  E  E  G  R  T  *  N  H  E  V  K  S  S  S  V  L  L  F  W  S  F  *  *  *  I  S  A  F  S  S  *  V  Q  L  S  E  C  I  R  Y  Q  L  R  V  *  R  K  E  P  N  S  K  P  I  R  *  T  F  *  S  Q  G  I  Y  I  L  R  T  E  S  S  N  K  E  F  Q  P  Y  Y  *  D  W  G  R  W  I  W  M  C  I  *  G  H  S  K  D  W  *  G  L  I  E  K  D  *  R  G  Y  K  T  T  W  *  E  R  I  T   : G  T  Q  R  V  G  D  R  S  Q  C  S  R  C  C  *  T  *  K  P  R  Q  I  S  W  L  L  C  R  R  *  R  E  R  N  S  A  A  F  G  V  *  I  H  A  *  Q  K  C  R  K  P  F  V  S  *  V  R  N  P   </second_frame>
            <third_frame>   I  F  T  L  T  R  H  V  N  F  P  A  P  *  S  L  G  *  I  L  Q  A  S  V  *  L  D  I  Q  I  R  Y  T  S  V  H  S  *  Y  Y  R  F  T  F  M  *  N  Y  L  N  I  N  *  P  F  W  L  N  L  Q  G  G  Y  F  S  S  I  L  K  D  M  K  C  F  P  F  Y  N  A  E  K  K  E  E  P  K  T  T  K  S  N  P  V  L  S  S  S  F  G  L  F  D  S  E  F  R  H  S  H  R  E  S  S  S  Q  N  V  S  D  T  S  S  E  S  R  G  R  S  Q  I  P  S  L  S  D  R  P  S  D  L  R  A  F  T  F  S  E  L  K  A  A  T  K  N  F  N  R  T  T  K  I  G  E  G  G  F  G  C  V  Y  K  A  T  V  K  T  G  E  D  S  S  K  K  I  D  V  A  I  K  Q  L  G  R  R  G  L  Q  :  G  H  K  E  W  V  T  E  V  N  V  L  G  V  A  E  H  K  N  L  V  K  L  V  G  Y  C  A  E  D  D  E  R  G  I  Q  R  L  L  V  Y  E  Y  M  P  N  R  S  V  E  N  H  L  S  A  R  S  E  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20344" stop="20775"/>
                    <exon start="23080" stop="23259"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFWLNLQGGYFSSILKDMKCFPFYNAEKKEEPKTTKSNPVLSSSFGLFDSEFRHSHRESSSQNVSDTSSESRGRSQIPSLSDRPSDLRAFTFSELKAATKNFNRTTKIGEGGFGCVYKATVKTGEDSSKKIDVAIKQLGRRGLQGHKEWVTEVNVLGVAEHKNLVKLVGYCAEDDERGIQRLLVYEYMPNRSVENHLSARSETP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18530" e_stop="18681"/>
            <exon e_start="18806" e_stop="18893"/>
            <exon e_start="19216" e_stop="19261"/>
            <exon e_start="19381" e_stop="19467"/>
            <exon e_start="20365" e_stop="20393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.606" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18530" e_stop="18681" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.606" acc_prob="0.987">
            <gDNA_intron_boundary i_start="18682" i_stop="18805" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18806" e_stop="18893" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="0.870">
            <gDNA_intron_boundary i_start="18894" i_stop="19215" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19216" e_stop="19261" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19262" i_stop="19380" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19381" e_stop="19467" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.705" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19468" i_stop="20364" i_length="897"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20365" e_stop="20393" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18530" stop="18681"/>
              <exon start="18806" stop="18893"/>
              <exon start="19216" stop="19261"/>
              <exon start="19381" stop="19467"/>
              <exon start="20365" stop="20393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGTGAAGACTTTTCTCAAGTCATCTAAAGTCTTTGCCATCTTTGACAAGATAAAACCTTTTATTGGAGCTGAAAGTTTTATCAAGTTCCAAATAGTACTGCAATTTTTGATAAAAATTATGGTGTGGGTTCAGATTTAGTAGCTTAAAG : GAACTGTAAAATTTGAGCTTTTGACTATTCAAGAACTGGAAAAGATTGAATCTTGCACTTTGTAGATGGTGGGTTTTCTACATTTCTG : ATTGAGATAAAGTTTATGCTGTGGGTTCAGATTTAGCAGCCTAAAG : GAATTGTAAAATTGGGCTTTTGGCTATCCAAGAACTGAAAAAGATTGAATCTCGTGTCCCGTAGATGGTGGGTTTTCTACATTTCTG : GGAGGGTATTTTAGTAGCATACTTAAGGA</gDNA_template>
            <first_frame> P  C  E  D  F  S  Q  V  I  *  S  L  C  H  L  *  Q  D  K  T  F  Y  W  S  *  K  F  Y  Q  V  P  N  S  T  A  I  F  D  K  N  Y  G  V  G  S  D  L  V  A  *  R :   N  C  K  I  *  A  F  D  Y  S  R  T  G  K  D  *  I  L  H  F  V  D  G  G  F  S  T  F  L  :  I  E  I  K  F  M  L  W  V  Q  I  *  Q  P  K   : G  I  V  K  L  G  F  W  L  S  K  N  *  K  R  L  N  L  V  S  R  R  W  W  V  F  Y  I  S   : G  R  V  F  *  *  H  T  *  G </first_frame>
            <second_frame>  R  V  K  T  F  L  K  S  S  K  V  F  A  I  F  D  K  I  K  P  F  I  G  A  E  S  F  I  K  F  Q  I  V  L  Q  F  L  I  K  I  M  V  W  V  Q  I  *  *  L  K   : G  T  V  K  F  E  L  L  T  I  Q  E  L  E  K  I  E  S  C  T  L  *  M  V  G  F  L  H  F  * :   L  R  *  S  L  C  C  G  F  R  F  S  S  L  K  :  E  L  *  N  W  A  F  G  Y  P  R  T  E  K  D  *  I  S  C  P  V  D  G  G  F  S  T  F  L  :  G  G  Y  F  S  S  I  L  K   </second_frame>
            <third_frame>   V  *  R  L  F  S  S  H  L  K  S  L  P  S  L  T  R  *  N  L  L  L  E  L  K  V  L  S  S  S  K  *  Y  C  N  F  *  *  K  L  W  C  G  F  R  F  S  S  L  K  :  E  L  *  N  L  S  F  *  L  F  K  N  W  K  R  L  N  L  A  L  C  R  W  W  V  F  Y  I  S   : D  *  D  K  V  Y  A  V  G  S  D  L  A  A  *  R :   N  C  K  I  G  L  L  A  I  Q  E  L  K  K  I  E  S  R  V  P  *  M  V  G  F  L  H  F  W :   E  G  I  L  V  A  Y  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0116C14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23906" PGL_stop="24501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23906" e_stop="24501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="23906" e_stop="24501" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23906" stop="24392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23984" stop="24488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24056" stop="24352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24101" stop="24352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24169" stop="24501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCTCTTAGAGTGGGTAAAGCCATACATATCAGATTCTAAGAAGTTTCAGCAGATAATAGACCCAAGGCTTGATGGTAAGATCTCAAGGTCAGCTCAGAAGCTCTCTATAGTCGCCAACCGCTGCTTAGTCAGACATGCAAAGACACGTCCAAAAATGAGCGAAGTCCTGGAAATGGTGAACAAAGTTGTCGAGACATCAACAGGAATAGGAAACCCTGGACCACCTGTGAGAATCGCGGAACCAACTTCACCAGAATCTACAAGGAAAGGTAAGAGGAAGGTAGACACCAAACTCGGAGATGGTAGCCGGTTAGTACGTATATGGTCAACAAAGCTTACAAACACTTGTTAATACAATAGTTTCCAATATGCACAAAGAGAAAACAGAGTTGAAAAGGTAATGAAGAAGCACAGATTATATAACTAGTTCCCAATATGAATGAGGTCTTCTCCATTATTGTCTTATATTTATATATAATATAGATGTTTAAATTTATAGAGAAAATCGTAATCATTCAAATGTACATTCAAATTTAGACGTGTTTAACAAATGAGGCATAAGTGTTGCTATTTGTATGAAGTTAAGCATTATT</gDNA_template>
            <first_frame> E  A  L  R  V  G  K  A  I  H  I  R  F  *  E  V  S  A  D  N  R  P  K  A  *  W  *  D  L  K  V  S  S  E  A  L  Y  S  R  Q  P  L  L  S  Q  T  C  K  D  T  S  K  N  E  R  S  P  G  N  G  E  Q  S  C  R  D  I  N  R  N  R  K  P  W  T  T  C  E  N  R  G  T  N  F  T  R  I  Y  K  E  R  *  E  E  G  R  H  Q  T  R  R  W  *  P  V  S  T  Y  M  V  N  K  A  Y  K  H  L  L  I  Q  *  F  P  I  C  T  K  R  K  Q  S  *  K  G  N  E  E  A  Q  I  I  *  L  V  P  N  M  N  E  V  F  S  I  I  V  L  Y  L  Y  I  I  *  M  F  K  F  I  E  K  I  V  I  I  Q  M  Y  I  Q  I  *  T  C  L  T  N  E  A  *  V  L  L  F  V  *  S  *  A  L   </first_frame>
            <second_frame>  K  L  L  E  W  V  K  P  Y  I  S  D  S  K  K  F  Q  Q  I  I  D  P  R  L  D  G  K  I  S  R  S  A  Q  K  L  S  I  V  A  N  R  C  L  V  R  H  A  K  T  R  P  K  M  S  E  V  L  E  M  V  N  K  V  V  E  T  S  T  G  I  G  N  P  G  P  P  V  R  I  A  E  P  T  S  P  E  S  T  R  K  G  K  R  K  V  D  T  K  L  G  D  G  S  R  L  V  R  I  W  S  T  K  L  T  N  T  C  *  Y  N  S  F  Q  Y  A  Q  R  E  N  R  V  E  K  V  M  K  K  H  R  L  Y  N  *  F  P  I  *  M  R  S  S  P  L  L  S  Y  I  Y  I  *  Y  R  C  L  N  L  *  R  K  S  *  S  F  K  C  T  F  K  F  R  R  V  *  Q  M  R  H  K  C  C  Y  L  Y  E  V  K  H  Y  </second_frame>
            <third_frame>   S  S  *  S  G  *  S  H  T  Y  Q  I  L  R  S  F  S  R  *  *  T  Q  G  L  M  V  R  S  Q  G  Q  L  R  S  S  L  *  S  P  T  A  A  *  S  D  M  Q  R  H  V  Q  K  *  A  K  S  W  K  W  *  T  K  L  S  R  H  Q  Q  E  *  E  T  L  D  H  L  *  E  S  R  N  Q  L  H  Q  N  L  Q  G  K  V  R  G  R  *  T  P  N  S  E  M  V  A  G  *  Y  V  Y  G  Q  Q  S  L  Q  T  L  V  N  T  I  V  S  N  M  H  K  E  K  T  E  L  K  R  *  *  R  S  T  D  Y  I  T  S  S  Q  Y  E  *  G  L  L  H  Y  C  L  I  F  I  Y  N  I  D  V  *  I  Y  R  E  N  R  N  H  S  N  V  H  S  N  L  D  V  F  N  K  *  G  I  S  V  A  I  C  M  K  L  S  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23907" stop="24260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLEWVKPYISDSKKFQQIIDPRLDGKISRSAQKLSIVANRCLVRHAKTRPKMSEVLEMVNKVVETSTGIGNPGPPVRIAEPTSPESTRKGKRKVDTKLGDGSRLVRIWSTKLTNTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30624" PGL_stop="36858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30624" e_stop="30869"/>
            <exon e_start="32365" e_stop="32757"/>
            <exon e_start="32830" e_stop="32999"/>
            <exon e_start="33517" e_stop="33590"/>
            <exon e_start="34209" e_stop="34263"/>
            <exon e_start="34698" e_stop="34772"/>
            <exon e_start="34894" e_stop="34967"/>
            <exon e_start="35050" e_stop="35098"/>
            <exon e_start="35560" e_stop="35644"/>
            <exon e_start="36050" e_stop="36106"/>
            <exon e_start="36514" e_stop="36858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.268" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30624" e_stop="30869" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.268" acc_prob="0.852">
            <gDNA_intron_boundary i_start="30870" i_stop="32364" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32365" e_stop="32757" e_length="393"/>
          </exon>
          <intron i_serial="2" don_prob="0.903" acc_prob="0.950">
            <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32830" e_stop="32999" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.855" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33517" e_stop="33590" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.924" acc_prob="0.987">
            <gDNA_intron_boundary i_start="33591" i_stop="34208" i_length="618"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34209" e_stop="34263" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.941" acc_prob="0.987">
            <gDNA_intron_boundary i_start="34264" i_stop="34697" i_length="434"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34698" e_stop="34772" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34773" i_stop="34893" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34894" e_stop="34967" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35050" e_stop="35098" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.844">
            <gDNA_intron_boundary i_start="35099" i_stop="35559" i_length="461"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35560" e_stop="35644" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35645" i_stop="36049" i_length="405"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36050" e_stop="36106" e_length="57"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.932">
            <gDNA_intron_boundary i_start="36107" i_stop="36513" i_length="407"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36514" e_stop="36858" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30624" stop="30869"/>
              <exon start="32365" stop="32757"/>
              <exon start="32830" stop="32949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30625" stop="30869"/>
              <exon start="32365" stop="32671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30626" stop="30869"/>
              <exon start="32365" stop="32633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30734" stop="30869"/>
              <exon start="32365" stop="32757"/>
              <exon start="32830" stop="32999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30755" stop="30869"/>
              <exon start="32365" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30869"/>
              <exon start="32365" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30797" stop="30869"/>
              <exon start="32365" stop="32757"/>
              <exon start="32830" stop="32932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32416" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33590"/>
              <exon start="34209" stop="34263"/>
              <exon start="34698" stop="34772"/>
              <exon start="34894" stop="34954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32607" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33590"/>
              <exon start="34209" stop="34263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34209" stop="34263"/>
              <exon start="34698" stop="34772"/>
              <exon start="34894" stop="34967"/>
              <exon start="35050" stop="35098"/>
              <exon start="35560" stop="35644"/>
              <exon start="36050" stop="36106"/>
              <exon start="36514" stop="36858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34913" stop="34967"/>
              <exon start="35050" stop="35098"/>
              <exon start="35560" stop="35644"/>
              <exon start="36050" stop="36106"/>
              <exon start="36514" stop="36785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331592" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTTAAAAAAAATATAAAAAATAAATAAATACTTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTATACAACACAAATTTATAATTTTTTTTTTGTATAGCATATGAAGTGGAATCGAATTAAAG : GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG : GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT : CATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG : ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG : TTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAG : CTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAA : GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCG : TATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAG : TCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAG : ACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTCAT</gDNA_template>
            <first_frame> N  P  *  K  K  Y  K  K  *  I  N  T  F  I  H  K  F  L  Y  K  L  K  S  L  F  Y  V  S  N  Q  K  K  T  L  *  I  R  F  F  F  S  Y  S  I  Y  K  F  H  F  S  L  H  K  K  *  L  S  S  L  S  L  L  I  Q  H  K  F  I  I  F  F  L  Y  S  I  *  S  G  I  E  L  K  :  V  Q  V  I  D  P  I  *  G  *  E  D  V  F  D  F  G  N  F  F  *  K  V  *  C  R  V  S  Q  N  M  M  L  L  V  G  F  L  V  F  S  M  W  T  N  F  L  V  P  T  I  T  V  T  V  H  S  M  T  L  K  S  V  M  N  N  I  P  Q  K  T  L  I  T  H  H  I  A  M  L  T  M  M  R  L  L  L  M  L  Y  K  K  N  G  Q  S  C  A  L  Q  K  M  L  N  L  H  M  Q  M  I  S  T  C  K  P  P  L  V  Y  S  I  G  M  V  L  Q  G  S  T  M  L  :  G  M  M  L  V  W  K  L  M  M  *  G  L  Q  V  L  A  L  V  L  E  T  D  H  T  M  E  K  S  M  L  T  H  W  K  Y  K  M  N  L  R  L  M  E  K  *  G  R  E  *  T  S  *  V  L  F  L :   M  F  L  E  *  T  E  T  Y  L  Q  L  M  K  Q  H  L  T  T  K  G  C  *  I   : D  C  N  Y  L  T  W  W  S  T  K  C  K  G  M  E  I  V  S :   S  V  L  Y  Q  I  N  S  I  V  V  L  S  T  T  N  L  S  D  S  K  *  S  M  S :   L  K  N  I  R  R  Y  M  R  G  M  S  Q  W  H  M  M  N  T  *  R  G  C  P   : R  M  G  N  G  E  I  M  L  R  C  R  L  P  L  T  R :   M  A  *  K  F  L  L  *  L  H  S  K  T  H  V  T  L  R  S  F  R  R  I  K  S  Q  I  E  :  S  Y  T  *  V  S  G  R  R  C  T  T  T  Q  S  T  L  K  E  :  T  S  C  H  V  M  I  S  R  R  R  R  R  S  G  V  F  G  T  S  I  K  S  S  *  P  V  L  F  K  L  N  F  T  Y  L  Q  W  H  H  L  G  Y  G  T  E  V  P  G  H  V  L  T  L  H  Y  N  N  S  Y  A  S  I  P  N  K  L  G  V  K  *  L  C  I  I  F  S  I  *  *  I  V  L  N  F  I  F  L  *  L  F  T  *  L  L  L  T  Y  S  T  S  L  F  *  V  G  I  I  R  S  Y  C  Y  I  H </first_frame>
            <second_frame>  I  L  K  K  N  I  K  N  K  *  I  L  S  Y  T  N  S  S  I  N  *  N  L  F  F  T  F  Q  T  K  K  K  L  C  K  F  A  F  F  F  L  T  L  Y  I  N  F  I  F  L  S  I  K  N  N  Y  H  L  Y  H  C  L  Y  N  T  N  L  *  F  F  F  C  I  A  Y  E  V  E  S  N  *  R :   Y  K  *  L  I  Q  F  R  G  E  K  T  F  L  T  L  A  T  F  S  E  R  C  N  V  V  *  A  R  I  *  C  C  S  W  G  S  *  F  S  R  C  G  P  T  F  *  F  Q  L  L  R  *  Q  Y  T  A  *  H  *  N  L  S  *  T  I  F  H  R  K  P  L  S  P  I  I  L  Q  C  *  Q  *  *  G  Y  C  S  C  S  T  R  R  M  V  R  V  V  H  Y  R  R  C  S  I  F  T  C  R  *  S  V  L  A  S  L  H  W  C  T  A  L  A  W  F  S  K  G  V  L  C  W :   A  *  C  W  C  G  S  *  *  C  R  A  F  K  F  L  L  *  S  W  R  Q  I  I  R  W  R  R  V  C  L  H  I  G  N  T  R  *  I  *  D  *  W  R  S  R  E  E  N  K  P  A  E  C  Y  S   : S  C  S  *  N  K  R  R  H  T  F  S  *  *  S  N  I  *  P  P  K  A  A  R  *  :  I  A  I  I  *  L  G  G  A  Q  S  A  R  G  W  K  L  S   : V  P  C  F  I  R  S  I  L  S  W  S  *  A  P  Q  I  C  Q  T  A  S  S  Q  *   : A  *  R  T  S  G  D  I  *  G  V  C  P  N  G  I  *  *  I  L  E  E  D  V  Q  :  E  W  G  M  G  R  S  C  Y  V  A  G  C  R  *  L   : V  W  R  E  N  S  C  Y  N  F  I  Q  R  H  M  L  H  *  D  P  S  E  E  S  K  V  K  *  S :   H  I  L  E  F  L  G  G  G  A  L  Q  L  N  L  P  S  R  R :   L  P  A  M  *  *  F  Q  E  E  E  E  E  V  E  F  L  E  Q  A  L  R  V  L  D  L  F  Y  S  S  *  T  L  P  T  C  N  G  I  I  S  V  T  V  Q  R  F  R  V  T  Y  L  L  Y  I  T  T  T  A  M  P  Q  S  R  T  S  W  G  S  S  S  F  A  L  F  F  L  Y  D  K  *  Y  L  T  L  Y  S  Y  N  C  S  H  N  Y  Y  *  H  I  V  L  V  C  S  K  L  A  *  *  D  H  I  V  I  F   </second_frame>
            <third_frame>   S  L  K  K  I  *  K  I  N  K  Y  F  H  T  Q  I  P  L  *  I  K  I  S  F  L  R  F  K  P  K  K  N  F  V  N  S  L  F  F  F  L  L  Y  I  *  I  S  F  F  S  P  *  K  I  I  I  I  F  I  T  A  Y  T  T  Q  I  Y  N  F  F  F  V  *  H  M  K  W  N  R  I  K   : G  T  S  D  *  S  N  L  G  V  R  R  R  F  *  L  W  Q  L  F  L  K  G  V  M  S  C  E  P  E  Y  D  A  A  R  G  V  L  S  F  L  D  V  D  Q  L  F  S  S  N  Y  Y  G  D  S  T  Q  H  D  I  E  I  C  H  E  Q  Y  S  T  E  N  P  Y  H  P  S  Y  C  N  V  D  N  D  E  V  I  A  H  A  L  Q  E  E  W  S  E  L  C  I  T  E  D  A  Q  S  S  H  A  D  D  Q  Y  L  Q  A  S  T  G  V  Q  H  W  H  G  S  P  R  E  Y  Y  A   : G  H  D  A  G  V  E  A  N  D  V  G  P  S  S  S  C  S  S  P  G  D  R  S  Y  D  G  E  E  Y  A  Y  T  L  E  I  Q  D  E  F  E  I  D  G  E  V  G  K  R  I  N  Q  L  S  A  I  P  :  H  V  P  R  I  N  G  D  I  P  S  V  D  E  A  T  S  D  H  Q  R  L  L  D  R :   L  Q  L  F  D  L  V  E  H  K  V  Q  G  D  G  N  C  Q  :  F  R  A  L  S  D  Q  F  Y  R  G  P  E  H  H  K  F  V  R  Q  Q  V  V  N  E  :  L  K  E  H  P  E  I  Y  E  G  Y  V  P  M  A  Y  D  E  Y  L  K  R  M  S  K :   N  G  E  W  G  D  H  V  T  L  Q  A  A  A  D  S  :  Y  G  V  K  I  L  V  I  T  S  F  K  D  T  C  Y  I  E  I  L  P  K  N  Q  K  S  N  R   : V  I  Y  L  S  F  W  A  E  V  H  Y  N  S  I  Y  P  Q  G   : D  F  L  P  C  D  D  F  K  K  K  K  K  K  W  S  F  W  N  K  H  *  E  F  L  T  C  F  I  Q  A  E  L  Y  L  P  A  M  A  S  S  R  L  R  Y  R  G  S  G  S  R  T  Y  F  T  L  Q  Q  Q  L  C  L  N  P  E  Q  V  G  G  Q  V  A  L  H  Y  F  F  Y  M  I  N  S  T  *  L  Y  I  L  I  I  V  H  I  I  I  I  N  I  *  Y  *  F  V  L  S  W  H  N  K  I  I  L  L  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32409" stop="32757"/>
                    <exon start="32830" stop="32999"/>
                    <exon start="33517" stop="33590"/>
                    <exon start="34209" stop="34263"/>
                    <exon start="34698" stop="34772"/>
                    <exon start="34894" stop="34967"/>
                    <exon start="35050" stop="35098"/>
                    <exon start="35560" stop="35644"/>
                    <exon start="36050" stop="36106"/>
                    <exon start="36514" stop="36578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWQLFLKGVMSCEPEYDAARGVLSFLDVDQLFSSNYYGDSTQHDIEICHEQYSTENPYHPSYCNVDNDEVIAHALQEEWSELCITEDAQSSHADDQYLQASTGVQHWHGSPREYYAGHDAGVEANDVGPSSSCSSPGDRSYDGEEYAYTLEIQDEFEIDGEVGKRINQLSAIPHVPRINGDIPSVDEATSDHQRLLDRLQLFDLVEHKVQGDGNCQFRALSDQFYRGPEHHKFVRQQVVNELKEHPEIYEGYVPMAYDEYLKRMSKNGEWGDHVTLQAAADSYGVKILVITSFKDTCYIEILPKNQKSNRVIYLSFWAEVHYNSIYPQGDFLPCDDFKKKKKKWSFWNKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30659" e_stop="30811"/>
            <exon e_start="30988" e_stop="30997"/>
            <exon e_start="31319" e_stop="31363"/>
            <exon e_start="31898" e_stop="31921"/>
            <exon e_start="32365" e_stop="32757"/>
            <exon e_start="32830" e_stop="32999"/>
            <exon e_start="33517" e_stop="33590"/>
            <exon e_start="34209" e_stop="34263"/>
            <exon e_start="34698" e_stop="34772"/>
            <exon e_start="34894" e_stop="34967"/>
            <exon e_start="35050" e_stop="35098"/>
            <exon e_start="35560" e_stop="35644"/>
            <exon e_start="36050" e_stop="36106"/>
            <exon e_start="36514" e_stop="36858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.845" e_score="0.935"/>
          <exon-intron don_prob="0.000" acc_prob="0.915" e_score="0.700"/>
          <exon-intron don_prob="0.000" acc_prob="0.582" e_score="0.511"/>
          <exon-intron don_prob="0.961" acc_prob="0.852" e_score="0.625"/>
          <exon-intron don_prob="0.903" acc_prob="0.950" e_score="0.994"/>
          <exon-intron don_prob="0.855" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="30659" e_stop="30811" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.845">
            <gDNA_intron_boundary i_start="30812" i_stop="30987" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="30988" e_stop="30997" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="30998" i_stop="31318" i_length="321"/>
          </intron>
          <exon e_serial="3" e_score="0.511">
            <gDNA_exon_boundary e_start="31319" e_stop="31363" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.582">
            <gDNA_intron_boundary i_start="31364" i_stop="31897" i_length="534"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="31898" e_stop="31921" e_length="24"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.852">
            <gDNA_intron_boundary i_start="31922" i_stop="32364" i_length="443"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="32365" e_stop="32757" e_length="393"/>
          </exon>
          <intron i_serial="5" don_prob="0.903" acc_prob="0.950">
            <gDNA_intron_boundary i_start="32758" i_stop="32829" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32830" e_stop="32999" e_length="170"/>
          </exon>
          <intron i_serial="6" don_prob="0.855" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33000" i_stop="33516" i_length="517"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33517" e_stop="33590" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.924" acc_prob="0.987">
            <gDNA_intron_boundary i_start="33591" i_stop="34208" i_length="618"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34209" e_stop="34263" e_length="55"/>
          </exon>
          <intron i_serial="8" don_prob="0.941" acc_prob="0.987">
            <gDNA_intron_boundary i_start="34264" i_stop="34697" i_length="434"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34698" e_stop="34772" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34773" i_stop="34893" i_length="121"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34894" e_stop="34967" e_length="74"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="35050" e_stop="35098" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.844">
            <gDNA_intron_boundary i_start="35099" i_stop="35559" i_length="461"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="35560" e_stop="35644" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35645" i_stop="36049" i_length="405"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="36050" e_stop="36106" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.932">
            <gDNA_intron_boundary i_start="36107" i_stop="36513" i_length="407"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="36514" e_stop="36858" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30659" stop="30811"/>
              <exon start="30988" stop="30997"/>
              <exon start="31319" stop="31363"/>
              <exon start="31898" stop="31921"/>
              <exon start="32365" stop="32697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32416" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33590"/>
              <exon start="34209" stop="34263"/>
              <exon start="34698" stop="34772"/>
              <exon start="34894" stop="34954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32607" stop="32757"/>
              <exon start="32830" stop="32999"/>
              <exon start="33517" stop="33590"/>
              <exon start="34209" stop="34263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34209" stop="34263"/>
              <exon start="34698" stop="34772"/>
              <exon start="34894" stop="34967"/>
              <exon start="35050" stop="35098"/>
              <exon start="35560" stop="35644"/>
              <exon start="36050" stop="36106"/>
              <exon start="36514" stop="36858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34913" stop="34967"/>
              <exon start="35050" stop="35098"/>
              <exon start="35560" stop="35644"/>
              <exon start="36050" stop="36106"/>
              <exon start="36514" stop="36785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331592" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATACACAAATTCCTCTATAAATTAAAATCTCTTTTTTACGTTTCAAACCAAAAAAAAACTTTGTAAATTCGCTTTTTTTTTTCTTACTCTATATATAAATTTCATTTTTCTCTCCATAAAAAATAATTATCATCTTTATCACTGCTTAT : TTTCGAATTA : GGGTAAACGAAATTGAAATTTTTTTATGCGGGTTGTGGGAAAGGA : GCTGGTGAGCCAATGACTCTAAAG : GTACAAGTGATTGATCCAATTTAGGGGTGAGAAGACGTTTTTGACTTTGGCAACTTTTTCTGAAAGGTGTAATGTCGTGTGAGCCAGAATATGATGCTGCTCGTGGGGTTCTTAGTTTTCTCGATGTGGACCAACTTTTTAGTTCCAACTATTACGGTGACAGTACACAGCATGACATTGAAATCTGTCATGAACAATATTCCACAGAAAACCCTTATCACCCATCATATTGCAATGTTGACAATGATGAGGTTATTGCTCATGCTCTACAAGAAGAATGGTCAGAGTTGTGCATTACAGAAGATGCTCAATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGGGAGTACTATGCTG : GGCATGATGCTGGTGTGGAAGCTAATGATGTAGGGCCTTCAAGTTCTTGCTCTAGTCCTGGAGACAGATCATACGATGGAGAAGAGTATGCTTACACATTGGAAATACAAGATGAATTTGAGATTGATGGAGAAGTAGGGAAGAGAATAAACCAGCTGAGTGCTATTCCT : CATGTTCCTAGAATAAACGGAGACATACCTTCAGTTGATGAAGCAACATCTGACCACCAAAGGCTGCTAGATAG : ATTGCAATTATTTGACTTGGTGGAGCACAAAGTGCAAGGGGATGGAAATTGTCAG : TTCCGTGCTTTATCAGATCAATTCTATCGTGGTCCTGAGCACCACAAATTTGTCAGACAGCAAGTAGTCAATGAG : CTTAAAGAACATCCGGAGATATATGAGGGGTATGTCCCAATGGCATATGATGAATACTTGAAGAGGATGTCCAA : GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCG : TATGGCGTGAAAATTCTTGTTATAACTTCATTCAAAGACACATGTTACATTGAGATCCTTCCGAAGAATCAAAAGTCAAATAGAG : TCATATACTTGAGTTTCTGGGCGGAGGTGCACTACAACTCAATCTACCCTCAAGGAG : ACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTCAT</gDNA_template>
            <first_frame> F  H  T  Q  I  P  L  *  I  K  I  S  F  L  R  F  K  P  K  K  N  F  V  N  S  L  F  F  F  L  L  Y  I  *  I  S  F  F  S  P  *  K  I  I  I  I  F  I  T  A  Y  :  F  R  I   : R  V  N  E  I  E  I  F  L  C  G  L  W  E  R   : S  W  *  A  N  D  S  K   : G  T  S  D  *  S  N  L  G  V  R  R  R  F  *  L  W  Q  L  F  L  K  G  V  M  S  C  E  P  E  Y  D  A  A  R  G  V  L  S  F  L  D  V  D  Q  L  F  S  S  N  Y  Y  G  D  S  T  Q  H  D  I  E  I  C  H  E  Q  Y  S  T  E  N  P  Y  H  P  S  Y  C  N  V  D  N  D  E  V  I  A  H  A  L  Q  E  E  W  S  E  L  C  I  T  E  D  A  Q  S  S  H  A  D  D  Q  Y  L  Q  A  S  T  G  V  Q  H  W  H  G  S  P  R  E  Y  Y  A   : G  H  D  A  G  V  E  A  N  D  V  G  P  S  S  S  C  S  S  P  G  D  R  S  Y  D  G  E  E  Y  A  Y  T  L  E  I  Q  D  E  F  E  I  D  G  E  V  G  K  R  I  N  Q  L  S  A  I  P  :  H  V  P  R  I  N  G  D  I  P  S  V  D  E  A  T  S  D  H  Q  R  L  L  D  R :   L  Q  L  F  D  L  V  E  H  K  V  Q  G  D  G  N  C  Q  :  F  R  A  L  S  D  Q  F  Y  R  G  P  E  H  H  K  F  V  R  Q  Q  V  V  N  E  :  L  K  E  H  P  E  I  Y  E  G  Y  V  P  M  A  Y  D  E  Y  L  K  R  M  S  K :   N  G  E  W  G  D  H  V  T  L  Q  A  A  A  D  S  :  Y  G  V  K  I  L  V  I  T  S  F  K  D  T  C  Y  I  E  I  L  P  K  N  Q  K  S  N  R   : V  I  Y  L  S  F  W  A  E  V  H  Y  N  S  I  Y  P  Q  G   : D  F  L  P  C  D  D  F  K  K  K  K  K  K  W  S  F  W  N  K  H  *  E  F  L  T  C  F  I  Q  A  E  L  Y  L  P  A  M  A  S  S  R  L  R  Y  R  G  S  G  S  R  T  Y  F  T  L  Q  Q  Q  L  C  L  N  P  E  Q  V  G  G  Q  V  A  L  H  Y  F  F  Y  M  I  N  S  T  *  L  Y  I  L  I  I  V  H  I  I  I  I  N  I  *  Y  *  F  V  L  S  W  H  N  K  I  I  L  L  Y  S  </first_frame>
            <second_frame>  F  I  H  K  F  L  Y  K  L  K  S  L  F  Y  V  S  N  Q  K  K  T  L  *  I  R  F  F  F  S  Y  S  I  Y  K  F  H  F  S  L  H  K  K  *  L  S  S  L  S  L  L  I :   F  E  L  :  G  *  T  K  L  K  F  F  Y  A  G  C  G  K  G  :  A  G  E  P  M  T  L  K  :  V  Q  V  I  D  P  I  *  G  *  E  D  V  F  D  F  G  N  F  F  *  K  V  *  C  R  V  S  Q  N  M  M  L  L  V  G  F  L  V  F  S  M  W  T  N  F  L  V  P  T  I  T  V  T  V  H  S  M  T  L  K  S  V  M  N  N  I  P  Q  K  T  L  I  T  H  H  I  A  M  L  T  M  M  R  L  L  L  M  L  Y  K  K  N  G  Q  S  C  A  L  Q  K  M  L  N  L  H  M  Q  M  I  S  T  C  K  P  P  L  V  Y  S  I  G  M  V  L  Q  G  S  T  M  L  :  G  M  M  L  V  W  K  L  M  M  *  G  L  Q  V  L  A  L  V  L  E  T  D  H  T  M  E  K  S  M  L  T  H  W  K  Y  K  M  N  L  R  L  M  E  K  *  G  R  E  *  T  S  *  V  L  F  L :   M  F  L  E  *  T  E  T  Y  L  Q  L  M  K  Q  H  L  T  T  K  G  C  *  I   : D  C  N  Y  L  T  W  W  S  T  K  C  K  G  M  E  I  V  S :   S  V  L  Y  Q  I  N  S  I  V  V  L  S  T  T  N  L  S  D  S  K  *  S  M  S :   L  K  N  I  R  R  Y  M  R  G  M  S  Q  W  H  M  M  N  T  *  R  G  C  P   : R  M  G  N  G  E  I  M  L  R  C  R  L  P  L  T  R :   M  A  *  K  F  L  L  *  L  H  S  K  T  H  V  T  L  R  S  F  R  R  I  K  S  Q  I  E  :  S  Y  T  *  V  S  G  R  R  C  T  T  T  Q  S  T  L  K  E  :  T  S  C  H  V  M  I  S  R  R  R  R  R  S  G  V  F  G  T  S  I  K  S  S  *  P  V  L  F  K  L  N  F  T  Y  L  Q  W  H  H  L  G  Y  G  T  E  V  P  G  H  V  L  T  L  H  Y  N  N  S  Y  A  S  I  P  N  K  L  G  V  K  *  L  C  I  I  F  S  I  *  *  I  V  L  N  F  I  F  L  *  L  F  T  *  L  L  L  T  Y  S  T  S  L  F  *  V  G  I  I  R  S  Y  C  Y  I  H </second_frame>
            <third_frame>   S  Y  T  N  S  S  I  N  *  N  L  F  F  T  F  Q  T  K  K  K  L  C  K  F  A  F  F  F  L  T  L  Y  I  N  F  I  F  L  S  I  K  N  N  Y  H  L  Y  H  C  L   : F  S  N  * :   G  K  R  N  *  N  F  F  M  R  V  V  G  K  E :   L  V  S  Q  *  L  *  R :   Y  K  *  L  I  Q  F  R  G  E  K  T  F  L  T  L  A  T  F  S  E  R  C  N  V  V  *  A  R  I  *  C  C  S  W  G  S  *  F  S  R  C  G  P  T  F  *  F  Q  L  L  R  *  Q  Y  T  A  *  H  *  N  L  S  *  T  I  F  H  R  K  P  L  S  P  I  I  L  Q  C  *  Q  *  *  G  Y  C  S  C  S  T  R  R  M  V  R  V  V  H  Y  R  R  C  S  I  F  T  C  R  *  S  V  L  A  S  L  H  W  C  T  A  L  A  W  F  S  K  G  V  L  C  W :   A  *  C  W  C  G  S  *  *  C  R  A  F  K  F  L  L  *  S  W  R  Q  I  I  R  W  R  R  V  C  L  H  I  G  N  T  R  *  I  *  D  *  W  R  S  R  E  E  N  K  P  A  E  C  Y  S   : S  C  S  *  N  K  R  R  H  T  F  S  *  *  S  N  I  *  P  P  K  A  A  R  *  :  I  A  I  I  *  L  G  G  A  Q  S  A  R  G  W  K  L  S   : V  P  C  F  I  R  S  I  L  S  W  S  *  A  P  Q  I  C  Q  T  A  S  S  Q  *   : A  *  R  T  S  G  D  I  *  G  V  C  P  N  G  I  *  *  I  L  E  E  D  V  Q  :  E  W  G  M  G  R  S  C  Y  V  A  G  C  R  *  L   : V  W  R  E  N  S  C  Y  N  F  I  Q  R  H  M  L  H  *  D  P  S  E  E  S  K  V  K  *  S :   H  I  L  E  F  L  G  G  G  A  L  Q  L  N  L  P  S  R  R :   L  P  A  M  *  *  F  Q  E  E  E  E  E  V  E  F  L  E  Q  A  L  R  V  L  D  L  F  Y  S  S  *  T  L  P  T  C  N  G  I  I  S  V  T  V  Q  R  F  R  V  T  Y  L  L  Y  I  T  T  T  A  M  P  Q  S  R  T  S  W  G  S  S  S  F  A  L  F  F  L  Y  D  K  *  Y  L  T  L  Y  S  Y  N  C  S  H  N  Y  Y  *  H  I  V  L  V  C  S  K  L  A  *  *  D  H  I  V  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32409" stop="32757"/>
                    <exon start="32830" stop="32999"/>
                    <exon start="33517" stop="33590"/>
                    <exon start="34209" stop="34263"/>
                    <exon start="34698" stop="34772"/>
                    <exon start="34894" stop="34967"/>
                    <exon start="35050" stop="35098"/>
                    <exon start="35560" stop="35644"/>
                    <exon start="36050" stop="36106"/>
                    <exon start="36514" stop="36578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWQLFLKGVMSCEPEYDAARGVLSFLDVDQLFSSNYYGDSTQHDIEICHEQYSTENPYHPSYCNVDNDEVIAHALQEEWSELCITEDAQSSHADDQYLQASTGVQHWHGSPREYYAGHDAGVEANDVGPSSSCSSPGDRSYDGEEYAYTLEIQDEFEIDGEVGKRINQLSAIPHVPRINGDIPSVDEATSDHQRLLDRLQLFDLVEHKVQGDGNCQFRALSDQFYRGPEHHKFVRQQVVNELKEHPEIYEGYVPMAYDEYLKRMSKNGEWGDHVTLQAAADSYGVKILVITSFKDTCYIEILPKNQKSNRVIYLSFWAEVHYNSIYPQGDFLPCDDFKKKKKKWSFWNKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36104" e_stop="36856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36104" e_stop="36856" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36104" stop="36856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGTTATTACTTTTGTACATTTTTGCCCTCTTTCCATATGATTTGTCTTAGCATTGTTAAGTCGTCTATAGGAAGGAAGAAAACGAAGATCTTGAAAAGCCGGAGGGGGTACATGCACATTTTCCCTGAATTAACATATACTCCCTTCCTTCCTGTTTACGTGATACTATTTCCTTATTAGTCTATTCCAAAAGATCGACACAGTTCTATATCTAGAAACAATTAAACTGTGTACTTCAATTTCACACCTAATCAGAAATGATGTTATCGTATGTTTCAAAAGTCTTCATTTTTTCTTGAATTCCGCGTTGATTCAAAACTATGTCACGTAAATCGGGACTTTGGGATGAAGGGAGAATTTTTGTCACTTGCTTTCTTCATTTACATTATCCTAAATGCTGCATTCCAGACTTCCTGCCATGTGATGATTTCAAGAAGAAGAAGAAGAAGTGGAGTTTTTGGAACAAGCATTAAGAGTTCTTGACCTGTTTTATTCAAGCTGAACTTTACCTACCTGCAATGGCATCATCTCGGTTACGGTACAGAGGTTCCGGGTCACGTACTTACTTTACATTACAACAACAGCTATGCCTCAATCCCGAACAAGTTGGGGGTCAAGTAGCTTTGCATTATTTTTTCTATATGATAAATAGTACTTAACTTTATATTCTTATAATTGTTCACATAATTATTATTAACATATAGTACTAGTTTGTTCTAAGTTGGCATAATAAGATCATATTGTTATATTC</gDNA_template>
            <first_frame> E  V  I  T  F  V  H  F  C  P  L  S  I  *  F  V  L  A  L  L  S  R  L  *  E  G  R  K  R  R  S  *  K  A  G  G  G  T  C  T  F  S  L  N  *  H  I  L  P  S  F  L  F  T  *  Y  Y  F  L  I  S  L  F  Q  K  I  D  T  V  L  Y  L  E  T  I  K  L  C  T  S  I  S  H  L  I  R  N  D  V  I  V  C  F  K  S  L  H  F  F  L  N  S  A  L  I  Q  N  Y  V  T  *  I  G  T  L  G  *  R  E  N  F  C  H  L  L  S  S  F  T  L  S  *  M  L  H  S  R  L  P  A  M  *  *  F  Q  E  E  E  E  E  V  E  F  L  E  Q  A  L  R  V  L  D  L  F  Y  S  S  *  T  L  P  T  C  N  G  I  I  S  V  T  V  Q  R  F  R  V  T  Y  L  L  Y  I  T  T  T  A  M  P  Q  S  R  T  S  W  G  S  S  S  F  A  L  F  F  L  Y  D  K  *  Y  L  T  L  Y  S  Y  N  C  S  H  N  Y  Y  *  H  I  V  L  V  C  S  K  L  A  *  *  D  H  I  V  I  F </first_frame>
            <second_frame>  R  L  L  L  L  Y  I  F  A  L  F  P  Y  D  L  S  *  H  C  *  V  V  Y  R  K  E  E  N  E  D  L  E  K  P  E  G  V  H  A  H  F  P  *  I  N  I  Y  S  L  P  S  C  L  R  D  T  I  S  L  L  V  Y  S  K  R  S  T  Q  F  Y  I  *  K  Q  L  N  C  V  L  Q  F  H  T  *  S  E  M  M  L  S  Y  V  S  K  V  F  I  F  S  *  I  P  R  *  F  K  T  M  S  R  K  S  G  L  W  D  E  G  R  I  F  V  T  C  F  L  H  L  H  Y  P  K  C  C  I  P  D  F  L  P  C  D  D  F  K  K  K  K  K  K  W  S  F  W  N  K  H  *  E  F  L  T  C  F  I  Q  A  E  L  Y  L  P  A  M  A  S  S  R  L  R  Y  R  G  S  G  S  R  T  Y  F  T  L  Q  Q  Q  L  C  L  N  P  E  Q  V  G  G  Q  V  A  L  H  Y  F  F  Y  M  I  N  S  T  *  L  Y  I  L  I  I  V  H  I  I  I  I  N  I  *  Y  *  F  V  L  S  W  H  N  K  I  I  L  L  Y   </second_frame>
            <third_frame>   G  Y  Y  F  C  T  F  L  P  S  F  H  M  I  C  L  S  I  V  K  S  S  I  G  R  K  K  T  K  I  L  K  S  R  R  G  Y  M  H  I  F  P  E  L  T  Y  T  P  F  L  P  V  Y  V  I  L  F  P  Y  *  S  I  P  K  D  R  H  S  S  I  S  R  N  N  *  T  V  Y  F  N  F  T  P  N  Q  K  *  C  Y  R  M  F  Q  K  S  S  F  F  L  E  F  R  V  D  S  K  L  C  H  V  N  R  D  F  G  M  K  G  E  F  L  S  L  A  F  F  I  Y  I  I  L  N  A  A  F  Q  T  S  C  H  V  M  I  S  R  R  R  R  R  S  G  V  F  G  T  S  I  K  S  S  *  P  V  L  F  K  L  N  F  T  Y  L  Q  W  H  H  L  G  Y  G  T  E  V  P  G  H  V  L  T  L  H  Y  N  N  S  Y  A  S  I  P  N  K  L  G  V  K  *  L  C  I  I  F  S  I  *  *  I  V  L  N  F  I  F  L  *  L  F  T  *  L  L  L  T  Y  S  T  S  L  F  *  V  G  I  I  R  S  Y  C  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36367" stop="36588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYRMFQKSSFFLEFRVDSKLCHVNRDFGMKGEFLSLAFFIYIILNAAFQTSCHVMISRRRRRSGVFGTSIKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34966" e_stop="34967"/>
            <exon e_start="35050" e_stop="35485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34966" e_stop="34967" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34968" i_stop="35049" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="35050" e_stop="35485" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34966" stop="34967"/>
              <exon start="35050" stop="35485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AA : GAATGGGGAATGGGGAGATCATGTTACGTTGCAGGCTGCCGCTGACTCGGTATTGATTATTGCTCTTACTTTGCTTCCTTTGTTTTATTTCTCTCCATTTGATTGTGGTCTTTTGGTTGGTCACTTTACTGTGGAAATAAGAACTTTAAGCTATTGCTAGACAGACCATAATTTGAATGTCCTGGTCCTGGTATAGAGGCATTGGATATTCAAGTAGCTTGTTAATTGCACATTGATGGGCGTTGAGGAAGTAAACATGCTTCTATATAATCTTTACTCGTGGTCACGTAGTTGTTCATGACCGGATATTAACCATTTATTTTTTAATGTGGAAGAAAATGCACGTCAGCGTCCCTCTCCATCTTGTATTTCCTTCTTTCACTCTATCATGTGTGGTCTTGATGCATTCTTTCAAGATTTTGCTTGTGGTGATCTA</gDNA_template>
            <first_frame> K :   N  G  E  W  G  D  H  V  T  L  Q  A  A  A  D  S  V  L  I  I  A  L  T  L  L  P  L  F  Y  F  S  P  F  D  C  G  L  L  V  G  H  F  T  V  E  I  R  T  L  S  Y  C  *  T  D  H  N  L  N  V  L  V  L  V  *  R  H  W  I  F  K  *  L  V  N  C  T  L  M  G  V  E  E  V  N  M  L  L  Y  N  L  Y  S  W  S  R  S  C  S  *  P  D  I  N  H  L  F  F  N  V  E  E  N  A  R  Q  R  P  S  P  S  C  I  S  F  F  H  S  I  M  C  G  L  D  A  F  F  Q  D  F  A  C  G  D  L </first_frame>
            <second_frame>   : R  M  G  N  G  E  I  M  L  R  C  R  L  P  L  T  R  Y  *  L  L  L  L  L  C  F  L  C  F  I  S  L  H  L  I  V  V  F  W  L  V  T  L  L  W  K  *  E  L  *  A  I  A  R  Q  T  I  I  *  M  S  W  S  W  Y  R  G  I  G  Y  S  S  S  L  L  I  A  H  *  W  A  L  R  K  *  T  C  F  Y  I  I  F  T  R  G  H  V  V  V  H  D  R  I  L  T  I  Y  F  L  M  W  K  K  M  H  V  S  V  P  L  H  L  V  F  P  S  F  T  L  S  C  V  V  L  M  H  S  F  K  I  L  L  V  V  I   </second_frame>
            <third_frame>   :  E  W  G  M  G  R  S  C  Y  V  A  G  C  R  *  L  G  I  D  Y  C  S  Y  F  A  S  F  V  L  F  L  S  I  *  L  W  S  F  G  W  S  L  Y  C  G  N  K  N  F  K  L  L  L  D  R  P  *  F  E  C  P  G  P  G  I  E  A  L  D  I  Q  V  A  C  *  L  H  I  D  G  R  *  G  S  K  H  A  S  I  *  S  L  L  V  V  T  *  L  F  M  T  G  Y  *  P  F  I  F  *  C  G  R  K  C  T  S  A  S  L  S  I  L  Y  F  L  L  S  L  Y  H  V  W  S  *  C  I  L  S  R  F  C  L  W  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0116C14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37779" PGL_stop="44398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37779" e_stop="39017"/>
            <exon e_start="40522" e_stop="40534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.684" e_score="0.986"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="37779" e_stop="39017" e_length="1239"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.684">
            <gDNA_intron_boundary i_start="39018" i_stop="40521" i_length="1504"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="40522" e_stop="40534" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37779" stop="38459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37780" stop="38324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38241" stop="39017"/>
              <exon start="40522" stop="40534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCAATTTGGCTGCGATTGTGGAGTCATAGAGAAAAATCCACCACCTACCGGAAATCCAGAAACAGGCGTAGCTCGTGTTAACGGAGCTAAAACCGACGGTTGTGACTGAGACAACGGTATGTTCTCCGACGTCGTAGTGACTTGAGTCGCCGGAACCGTACCTGTTCCTGTAGCAGCGATGATTGCTGGTTCAGCGTTACGGAGAAGCCACTCTATCGTTTCTCCGTCAGTCCTATGACCTAGTTCCTTCGTTAATTGAAAAACACGCGCCGCGCATAACGCCGGCATCCTTACGCGCCGTCCTCTACCATTGACTTTTGTATGCCTGTCTTTGCTAGATGAAACGGATAACGCATTCTTCTTCTTCGTCGGAACGACCGCGAGCGCAGTTTTGCCATTTGTTTCTGAGTTAACGCTACCGTTCCCGACGCCGGAGATTGCACCGGAAACAACTATTTCTGAACCCATTTTTAGGGTTTTTTTTTTTTTTGAATGGAGGGAAAAGTAGTACTTTGTGCTTTAGGGATGAATTTTGATTTTTAATAGACCCCACAAAAATGGAAAAGAGTTTTTATAGGAAAAAAAAATTGATGTGAGAGTTTCTGTATCTTCTTGGGAAGTGTGTTTGGACTGAAAGGGCCCATTAAGCTTCATGGGCCCAATACTATGTTGTGGATCCCACTTCAGACAATTATTCTTTTTTTTTTTAAATAAAAATAACACTTTAGTTGTTTAAAAAATAGAAAACAAATTTGTTGAAATAAATAGGGAAAATGCACTGCCTCTCAAACTATGCTCGAAATTCCAGAGACACACTTATACTATACTAAAGTCCTATTACCCTCTGAACTTATTTTATAAATAATTTTCTACTCTTTTTCGACTTACGTGACACTAATTTGAAAAAAAAGTCAATCAGTGTTGGACCCACAAGATAGTGCCACGTAGGCTGAAAAGAAGTAGAAAAATTGTTAATAAAATAAATTCAGGGGATAATAAGACATTAGTATAGTATAAGTGTGTCTTTGAGATTTCGTGCATAGGTTGAATGGTTACCTGTGCATTATCCCAAACAAAAACATAGTATTTTTTTTTTTTGGTTTTGCATTTGTATGAATTTAAGGGGATGAGAGAAAATAATGCATATATGGAGATTTTGTATTTGTGAGTGTATGAAAAGATATTTAAGGTTATAGTTATGAAATTAAAGCACAAGCTATTATAATAAAGAGAAATG : AAAAATAGTGAAG</gDNA_template>
            <first_frame> R  Q  F  G  C  D  C  G  V  I  E  K  N  P  P  P  T  G  N  P  E  T  G  V  A  R  V  N  G  A  K  T  D  G  C  D  *  D  N  G  M  F  S  D  V  V  V  T  *  V  A  G  T  V  P  V  P  V  A  A  M  I  A  G  S  A  L  R  R  S  H  S  I  V  S  P  S  V  L  *  P  S  S  F  V  N  *  K  T  R  A  A  H  N  A  G  I  L  T  R  R  P  L  P  L  T  F  V  C  L  S  L  L  D  E  T  D  N  A  F  F  F  F  V  G  T  T  A  S  A  V  L  P  F  V  S  E  L  T  L  P  F  P  T  P  E  I  A  P  E  T  T  I  S  E  P  I  F  R  V  F  F  F  F  E  W  R  E  K  *  Y  F  V  L  *  G  *  I  L  I  F  N  R  P  H  K  N  G  K  E  F  L  *  E  K  K  I  D  V  R  V  S  V  S  S  W  E  V  C  L  D  *  K  G  P  L  S  F  M  G  P  I  L  C  C  G  S  H  F  R  Q  L  F  F  F  F  L  N  K  N  N  T  L  V  V  *  K  I  E  N  K  F  V  E  I  N  R  E  N  A  L  P  L  K  L  C  S  K  F  Q  R  H  T  Y  T  I  L  K  S  Y  Y  P  L  N  L  F  Y  K  *  F  S  T  L  F  R  L  T  *  H  *  F  E  K  K  V  N  Q  C  W  T  H  K  I  V  P  R  R  L  K  R  S  R  K  I  V  N  K  I  N  S  G  D  N  K  T  L  V  *  Y  K  C  V  F  E  I  S  C  I  G  *  M  V  T  C  A  L  S  Q  T  K  T  *  Y  F  F  F  L  V  L  H  L  Y  E  F  K  G  M  R  E  N  N  A  Y  M  E  I  L  Y  L  *  V  Y  E  K  I  F  K  V  I  V  M  K  L  K  H  K  L  L  *  *  R  E  M  :  K  N  S  E  </first_frame>
            <second_frame>  G  N  L  A  A  I  V  E  S  *  R  K  I  H  H  L  P  E  I  Q  K  Q  A  *  L  V  L  T  E  L  K  P  T  V  V  T  E  T  T  V  C  S  P  T  S  *  *  L  E  S  P  E  P  Y  L  F  L  *  Q  R  *  L  L  V  Q  R  Y  G  E  A  T  L  S  F  L  R  Q  S  Y  D  L  V  P  S  L  I  E  K  H  A  P  R  I  T  P  A  S  L  R  A  V  L  Y  H  *  L  L  Y  A  C  L  C  *  M  K  R  I  T  H  S  S  S  S  S  E  R  P  R  A  Q  F  C  H  L  F  L  S  *  R  Y  R  S  R  R  R  R  L  H  R  K  Q  L  F  L  N  P  F  L  G  F  F  F  F  L  N  G  G  K  S  S  T  L  C  F  R  D  E  F  *  F  L  I  D  P  T  K  M  E  K  S  F  Y  R  K  K  K  L  M  *  E  F  L  Y  L  L  G  K  C  V  W  T  E  R  A  H  *  A  S  W  A  Q  Y  Y  V  V  D  P  T  S  D  N  Y  S  F  F  F  *  I  K  I  T  L  *  L  F  K  K  *  K  T  N  L  L  K  *  I  G  K  M  H  C  L  S  N  Y  A  R  N  S  R  D  T  L  I  L  Y  *  S  P  I  T  L  *  T  Y  F  I  N  N  F  L  L  F  F  D  L  R  D  T  N  L  K  K  K  S  I  S  V  G  P  T  R  *  C  H  V  G  *  K  E  V  E  K  L  L  I  K  *  I  Q  G  I  I  R  H  *  Y  S  I  S  V  S  L  R  F  R  A  *  V  E  W  L  P  V  H  Y  P  K  Q  K  H  S  I  F  F  F  W  F  C  I  C  M  N  L  R  G  *  E  K  I  M  H  I  W  R  F  C  I  C  E  C  M  K  R  Y  L  R  L  *  L  *  N  *  S  T  S  Y  Y  N  K  E  K  * :   K  I  V  K </second_frame>
            <third_frame>   A  I  W  L  R  L  W  S  H  R  E  K  S  T  T  Y  R  K  S  R  N  R  R  S  S  C  *  R  S  *  N  R  R  L  *  L  R  Q  R  Y  V  L  R  R  R  S  D  L  S  R  R  N  R  T  C  S  C  S  S  D  D  C  W  F  S  V  T  E  K  P  L  Y  R  F  S  V  S  P  M  T  *  F  L  R  *  L  K  N  T  R  R  A  *  R  R  H  P  Y  A  P  S  S  T  I  D  F  C  M  P  V  F  A  R  *  N  G  *  R  I  L  L  L  R  R  N  D  R  E  R  S  F  A  I  C  F  *  V  N  A  T  V  P  D  A  G  D  C  T  G  N  N  Y  F  *  T  H  F  *  G  F  F  F  F  *  M  E  G  K  V  V  L  C  A  L  G  M  N  F  D  F  *  *  T  P  Q  K  W  K  R  V  F  I  G  K  K  N  *  C  E  S  F  C  I  F  L  G  S  V  F  G  L  K  G  P  I  K  L  H  G  P  N  T  M  L  W  I  P  L  Q  T  I  I  L  F  F  F  K  *  K  *  H  F  S  C  L  K  N  R  K  Q  I  C  *  N  K  *  G  K  C  T  A  S  Q  T  M  L  E  I  P  E  T  H  L  Y  Y  T  K  V  L  L  P  S  E  L  I  L  *  I  I  F  Y  S  F  S  T  Y  V  T  L  I  *  K  K  S  Q  S  V  L  D  P  Q  D  S  A  T  *  A  E  K  K  *  K  N  C  *  *  N  K  F  R  G  *  *  D  I  S  I  V  *  V  C  L  *  D  F  V  H  R  L  N  G  Y  L  C  I  I  P  N  K  N  I  V  F  F  F  F  G  F  A  F  V  *  I  *  G  D  E  R  K  *  C  I  Y  G  D  F  V  F  V  S  V  *  K  D  I  *  G  Y  S  Y  E  I  K  A  Q  A  I  I  I  K  R  N   : E  K  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38040" stop="38288"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTRAAHNAGILTRRPLPLTFVCLSLLDETDNAFFFFVGTTASAVLPFVSELTLPFPTPEIAPETTISEPIFRVFFFFEWREK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40409" e_stop="40645"/>
            <exon e_start="42818" e_stop="42969"/>
            <exon e_start="43130" e_stop="43257"/>
            <exon e_start="43359" e_stop="43808"/>
            <exon e_start="43918" e_stop="43955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.741" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.978" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="40409" e_stop="40645" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40646" i_stop="42817" i_length="2172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42818" e_stop="42969" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.741" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42970" i_stop="43129" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43130" e_stop="43257" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.706" acc_prob="0.967">
            <gDNA_intron_boundary i_start="43258" i_stop="43358" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="43359" e_stop="43808" e_length="450"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.978">
            <gDNA_intron_boundary i_start="43809" i_stop="43917" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43918" e_stop="43955" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40409" stop="40645"/>
              <exon start="42818" stop="42969"/>
              <exon start="43130" stop="43257"/>
              <exon start="43359" stop="43376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40409" stop="40645"/>
              <exon start="42818" stop="42969"/>
              <exon start="43130" stop="43257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43168" stop="43257"/>
              <exon start="43359" stop="43808"/>
              <exon start="43918" stop="43955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAG : TTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTG : GCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTC : GTTTCCCCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCAAATAAGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAAGTATGTTCCTTTGTCCGTCTTGATAATATCCTTGTTTATTTTCACACCTGCTAGTAGTATTAGTATTATTTTCAGTATTTTTATTATTTTACTATTTCCGTATTTCTCATTCTTAAGTTTTCTATTGCTACTTGCTGTCTCTTATGCCTCTATTTTCTTACTATCGTGTTTTTGATACTGCTCATGTCTTCATAAATGTTGTGTTTTTGCATTCTTTGAGCTGAGGGTCTCTCTACGTGACAAGGTAGGGGTAAG : TTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAG</gDNA_template>
            <first_frame> I  H  L  Q  S  S  N  E  A  F  L  I  Q  E  N  T  H  A  S  T  K  T  P  L  N  S  E  K  R  Y  L  F  Y  T  P  H  T  R  K  I  V  K  S  F  T  R  *  L  S  L  K  L  W  R  L  L  E  E  T  F  F  L  H  H  Q  L  F  L  R  K  P  N  S  G  I  V  L  L  Q  :  F  *  C  F  M  S  M  L  L  L  C  F  L  Q  C  P  I  L  I  W  V  D  M  F  L  H  Q  L  S  V  R  S  S  I  L  R  I  G  C  N  C  T  *  *  R  K  R  K  H  P  W :   Q  Q  *  I  G  G  L  W  K  L  H  P  Q  N  W  K  R  M  M  L  L  I  Q  S  K  I  *  M  L  C  K  C  S  Y  F  I  G  L  V  H  H  I   : R  F  P  R  I  I  *  R  E  K  D  H  Y  L  Q  I  R  N  L  F  T  V  R  E  I  N  *  *  T  L  N  H  T  V  W  L  L  L  P  E  K  L  C  W  H  Q  K  R  Q  L  Y  *  L  K  T  P  N  Y  L  M  I  L  I  F  Q  S  M  F  L  C  P  S  *  *  Y  P  C  L  F  S  H  L  L  V  V  L  V  L  F  S  V  F  L  L  F  Y  Y  F  R  I  S  H  S  *  V  F  Y  C  Y  L  L  S  L  M  P  L  F  S  Y  Y  R  V  F  D  T  A  H  V  F  I  N  V  V  F  L  H  S  L  S  *  G  S  L  Y  V  T  R  *  G  *   : V  S  Y  P  R  I  W  L  M  I  N  *  K </first_frame>
            <second_frame>  F  I  F  N  L  Q  M  K  L  F  *  F  K  K  I  L  M  L  A  L  K  P  L  L  I  L  K  K  D  I  F  F  T  P  H  I  P  E  K  *  *  R  V  S  Q  D  S  L  A  *  S  Y  G  G  C  W  K  K  P  S  F  F  T  T  N  F  F  S  E  N  P  T  Q  E  L  F  F  F  S :   S  D  A  S  *  A  C  C  S  C  A  F  F  S  A  P  Y  L  F  G  S  I  C  S  C  I  S  Y  R  S  G  A  A  F  *  E  S  A  A  I  A  P  S  K  G  R  E  N  I  P   : G  N  N  R  *  E  A  C  G  S  C  I  L  R  I  G  R  E  *  C  C  *  F  R  A  K  Y  K  C  F  A  S  A  A  T  S  L  A  W  S  I  I  F  :  V  S  P  V  L  S  E  G  K  R  T  I  I  S  K  *  G  T  S  S  Q  *  G  R  *  I  N  E  L  *  T  T  Q  C  G  C  S  C  Q  K  S  F  V  G  I  K  R  G  S  F  I  S  *  R  L  Q  I  T  *  *  F  S  F  S  K  V  C  S  F  V  R  L  D  N  I  L  V  Y  F  H  T  C  *  *  Y  *  Y  Y  F  Q  Y  F  Y  Y  F  T  I  S  V  F  L  I  L  K  F  S  I  A  T  C  C  L  L  C  L  Y  F  L  T  I  V  F  L  I  L  L  M  S  S  *  M  L  C  F  C  I  L  *  A  E  G  L  S  T  *  Q  G  R  G  K  :  F  P  I  H  A  F  G  *  *  *  T  E   </second_frame>
            <third_frame>   S  S  S  I  F  K  *  S  F  F  N  S  R  K  Y  S  C  *  H  *  N  P  S  *  F  *  K  K  I  S  F  L  H  P  T  Y  Q  K  N  S  E  E  F  H  K  I  A  *  L  K  A  M  E  A  A  G  R  N  L  L  S  S  P  P  T  F  S  Q  K  T  Q  L  R  N  C  S  S  S   : V  L  M  L  H  E  H  A  A  P  V  L  S  S  V  P  H  T  Y  L  G  R  Y  V  P  A  S  A  I  G  P  E  Q  H  F  E  N  R  L  Q  L  H  L  V  K  E  E  K  T  S  L  :  A  T  I  D  R  R  L  V  E  A  A  S  S  E  L  E  E  N  D  A  V  D  S  E  Q  N  I  N  A  L  Q  V  Q  L  L  H  W  P  G  P  S  Y  S :   F  P  P  Y  Y  L  K  G  K  G  P  L  S  P  N  K  E  P  L  H  S  K  G  D  K  L  M  N  F  E  P  H  S  V  V  A  L  A  R  K  A  L  L  A  S  K  E  A  A  L  L  A  E  D  S  K  L  L  D  D  S  H  F  P  K  Y  V  P  L  S  V  L  I  I  S  L  F  I  F  T  P  A  S  S  I  S  I  I  F  S  I  F  I  I  L  L  F  P  Y  F  S  F  L  S  F  L  L  L  L  A  V  S  Y  A  S  I  F  L  L  S  C  F  *  Y  C  S  C  L  H  K  C  C  V  F  A  F  F  E  L  R  V  S  L  R  D  K  V  G  V  S :   F  L  S  T  H  L  V  D  D  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40555" stop="40645"/>
                    <exon start="42818" stop="42969"/>
                    <exon start="43130" stop="43257"/>
                    <exon start="43359" stop="43728"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKAMEAAGRNLLSSPPTFSQKTQLRNCSSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLLDDSHFPKYVPLSVLIISLFIFTPASSISIIFSIFIILLFPYFSFLSFLLLLAVSYASIFLLSCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40396" e_stop="40645"/>
            <exon e_start="42818" e_stop="42969"/>
            <exon e_start="43130" e_stop="43267"/>
            <exon e_start="43359" e_stop="43384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.355" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40396" e_stop="40645" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40646" i_stop="42817" i_length="2172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42818" e_stop="42969" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.741" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42970" i_stop="43129" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43130" e_stop="43267" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.355" acc_prob="0.967">
            <gDNA_intron_boundary i_start="43268" i_stop="43358" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43359" e_stop="43384" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40396" stop="40645"/>
              <exon start="42818" stop="42969"/>
              <exon start="43130" stop="43267"/>
              <exon start="43359" stop="43384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40409" stop="40645"/>
              <exon start="42818" stop="42969"/>
              <exon start="43130" stop="43257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCATCACTTCCATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCCCACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAATTGTTCTTCTTCAG : TTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTG : GCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTAAGATGAA : GTTTCCCCCGTATTATCTGAAGGGAA</gDNA_template>
            <first_frame> S  H  H  F  H  S  S  S  I  F  K  *  S  F  F  N  S  R  K  Y  S  C  *  H  *  N  P  S  *  F  *  K  K  I  S  F  L  H  P  T  Y  Q  K  N  S  E  E  F  H  K  I  A  *  L  K  A  M  E  A  A  G  R  N  L  L  S  S  P  P  T  F  S  Q  K  T  Q  L  R  N  C  S  S  S   : V  L  M  L  H  E  H  A  A  P  V  L  S  S  V  P  H  T  Y  L  G  R  Y  V  P  A  S  A  I  G  P  E  Q  H  F  E  N  R  L  Q  L  H  L  V  K  E  E  K  T  S  L  :  A  T  I  D  R  R  L  V  E  A  A  S  S  E  L  E  E  N  D  A  V  D  S  E  Q  N  I  N  A  L  Q  V  Q  L  L  H  W  P  G  P  S  Y  S  *  D  E  :  V  S  P  V  L  S  E  G   </first_frame>
            <second_frame>  A  I  T  S  I  H  L  Q  S  S  N  E  A  F  L  I  Q  E  N  T  H  A  S  T  K  T  P  L  N  S  E  K  R  Y  L  F  Y  T  P  H  T  R  K  I  V  K  S  F  T  R  *  L  S  L  K  L  W  R  L  L  E  E  T  F  F  L  H  H  Q  L  F  L  R  K  P  N  S  G  I  V  L  L  Q  :  F  *  C  F  M  S  M  L  L  L  C  F  L  Q  C  P  I  L  I  W  V  D  M  F  L  H  Q  L  S  V  R  S  S  I  L  R  I  G  C  N  C  T  *  *  R  K  R  K  H  P  W :   Q  Q  *  I  G  G  L  W  K  L  H  P  Q  N  W  K  R  M  M  L  L  I  Q  S  K  I  *  M  L  C  K  C  S  Y  F  I  G  L  V  H  H  I  R  K  M  K :   F  P  P  Y  Y  L  K  G  </second_frame>
            <third_frame>   P  S  L  P  F  I  F  N  L  Q  M  K  L  F  *  F  K  K  I  L  M  L  A  L  K  P  L  L  I  L  K  K  D  I  F  F  T  P  H  I  P  E  K  *  *  R  V  S  Q  D  S  L  A  *  S  Y  G  G  C  W  K  K  P  S  F  F  T  T  N  F  F  S  E  N  P  T  Q  E  L  F  F  F  S :   S  D  A  S  *  A  C  C  S  C  A  F  F  S  A  P  Y  L  F  G  S  I  C  S  C  I  S  Y  R  S  G  A  A  F  *  E  S  A  A  I  A  P  S  K  G  R  E  N  I  P   : G  N  N  R  *  E  A  C  G  S  C  I  L  R  I  G  R  E  *  C  C  *  F  R  A  K  Y  K  C  F  A  S  A  A  T  S  L  A  W  S  I  I  F  V  R  *   : S  F  P  R  I  I  *  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40555" stop="40645"/>
                    <exon start="42818" stop="42969"/>
                    <exon start="43130" stop="43261"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKAMEAAGRNLLSSPPTFSQKTQLRNCSSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43406" e_stop="43553"/>
            <exon e_start="43918" e_stop="44191"/>
            <exon e_start="44280" e_stop="44398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.565" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="43406" e_stop="43553" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="43554" i_stop="43917" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43918" e_stop="44191" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.565">
            <gDNA_intron_boundary i_start="44192" i_stop="44279" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="44280" e_stop="44398" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43406" stop="43553"/>
              <exon start="43918" stop="44191"/>
              <exon start="44280" stop="44398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAACCTCTTCACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCATTTTCCAAA : TTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAGAGCAACGTACAGTAAGATCAACACGTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACAAGAAGTTCAGGAGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGAATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACTCTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAG : ATCTCCATGAAATTACAAGAAGTAAAGCATCAGCTTCAGATTCAGTTTGCTCGTGAACCAACATCGCTTGAGTGGGCTGAAGCTGCAGGGATTACTTCTCGAGAATTGAAATCACAACT</gDNA_template>
            <first_frame> R  N  L  F  T  V  R  E  I  N  *  *  T  L  N  H  T  V  W  L  L  L  P  E  K  L  C  W  H  Q  K  R  Q  L  Y  *  L  K  T  P  N  Y  L  M  I  L  I  F  Q   : I  S  Y  P  R  I  W  L  M  I  N  *  K  S  N  V  Q  *  D  Q  H  V  L  *  R  G  S  L  E  K  G  E  L  Q  S  Q  Y  K  K  F  R  R  Q  I  I  V  Q  A  G  Q  M  C  G  E  K  *  T  N  L  L  I  *  M  I  L  F  E  C  S  Y  G  V  P  K  L  N  N  S  *  P  P  K  R  S  L  N  *  L  S  R  Y  R :   S  P  *  N  Y  K  K  *  S  I  S  F  R  F  S  L  L  V  N  Q  H  R  L  S  G  L  K  L  Q  G  L  L  L  E  N  *  N  H  N  </first_frame>
            <second_frame>  G  T  S  S  Q  *  G  R  *  I  N  E  L  *  T  T  Q  C  G  C  S  C  Q  K  S  F  V  G  I  K  R  G  S  F  I  S  *  R  L  Q  I  T  *  *  F  S  F  S  K  :  F  P  I  H  A  F  G  *  *  *  T  E  R  A  T  Y  S  K  I  N  T  F  Y  R  E  A  V  *  K  K  G  S  S  K  A  N  T  R  S  S  G  D  K  *  S  F  R  Q  A  R  C  A  E  K  S  E  R  I  Y  *  S  K  *  S  S  S  N  V  P  M  G  S  R  N  *  T  T  L  N  R  Q  R  G  V  *  I  D  C  Q  D  T   : D  L  H  E  I  T  R  S  K  A  S  A  S  D  S  V  C  S  *  T  N  I  A  *  V  G  *  S  C  R  D  Y  F  S  R  I  E  I  T  T </second_frame>
            <third_frame>   E  P  L  H  S  K  G  D  K  L  M  N  F  E  P  H  S  V  V  A  L  A  R  K  A  L  L  A  S  K  E  A  A  L  L  A  E  D  S  K  L  L  D  D  S  H  F  P  N :   F  L  S  T  H  L  V  D  D  K  L  K  E  Q  R  T  V  R  S  T  R  F  I  E  R  Q  S  R  K  R  G  A  P  K  P  I  Q  E  V  Q  E  T  N  N  R  S  G  R  P  D  V  R  R  K  V  N  E  S  I  D  L  N  D  P  L  R  M  F  L  W  G  P  E  T  K  Q  L  L  T  A  K  E  E  S  E  L  I  V  K  I  Q  :  I  S  M  K  L  Q  E  V  K  H  Q  L  Q  I  Q  F  A  R  E  P  T  S  L  E  W  A  E  A  A  G  I  T  S  R  E  L  K  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43408" stop="43553"/>
                    <exon start="43918" stop="44191"/>
                    <exon start="44280" stop="44396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLLDDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRELKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45614" PGL_stop="47030"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45614" e_stop="45652"/>
            <exon e_start="46334" e_stop="47030"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45614" e_stop="45652" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.886">
            <gDNA_intron_boundary i_start="45653" i_stop="46333" i_length="681"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="46334" e_stop="47030" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45614" stop="45652"/>
              <exon start="46334" stop="47030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAGTCAGTGTGGTCAGATCAAGATACTACTTTCCAG : GAAATTACTGCTGACAATGCAATTGAAGCACCAGAACTGAGTGTATCAAAACAACTTATGAGGCGTCACATACGCGGCCTCCTAAATGTCCTGAGTCCAAAGGAAAGGAAAATAATCCGACTTAGATTTGGCATTGGAGATGGCAAACCAAAGTCTCTATCCGAAATAGGCGCTGTTTTTGGACTGTCAAAGGAACGAGTACGACAACTAGAGACCCGAGCACTATACAAGCTAAAGCAGAATCTTAACAAGCATGGCCTCGATGCATATTCCGATTTGCTCTTTTAAATCACAGTCTCTTCAATTTACATAAAACGACTCGAGTTGTTACTGTGGCTGATGTAGCAGATGTTACTTTGAAATCAACAGTAGATACAAGTTGCTCACATCCTTGTAAGTATGGAGCAAACATTCAAATTCCAGCGGAGACAAAAACACCAGGTGATTCTTCCCATCTATCTTAGCCTTGATCGACAAAGTTGCATGTCATATACCTATTGCTGATGAGAGGTGATAGGTATCCCGTAGAGTCAGTCGAGGTGCGTGAAAGCTGACCTGGACGCCCGGAAAAAAAATATGGGATAAGTGTTTAGCTGTTTTTAGTTTTGCTTTACAAAATACTTGTGATGTGAACATGTTATTCCTGTTCTTACCTTTTTTATCTTGTAAAGTATCAAGTTGTAAATTATTTTTTTTC</gDNA_template>
            <first_frame> Q  Q  S  V  W  S  D  Q  D  T  T  F  Q  :  E  I  T  A  D  N  A  I  E  A  P  E  L  S  V  S  K  Q  L  M  R  R  H  I  R  G  L  L  N  V  L  S  P  K  E  R  K  I  I  R  L  R  F  G  I  G  D  G  K  P  K  S  L  S  E  I  G  A  V  F  G  L  S  K  E  R  V  R  Q  L  E  T  R  A  L  Y  K  L  K  Q  N  L  N  K  H  G  L  D  A  Y  S  D  L  L  F  *  I  T  V  S  S  I  Y  I  K  R  L  E  L  L  L  W  L  M  *  Q  M  L  L  *  N  Q  Q  *  I  Q  V  A  H  I  L  V  S  M  E  Q  T  F  K  F  Q  R  R  Q  K  H  Q  V  I  L  P  I  Y  L  S  L  D  R  Q  S  C  M  S  Y  T  Y  C  *  *  E  V  I  G  I  P  *  S  Q  S  R  C  V  K  A  D  L  D  A  R  K  K  N  M  G  *  V  F  S  C  F  *  F  C  F  T  K  Y  L  *  C  E  H  V  I  P  V  L  T  F  F  I  L  *  S  I  K  L  *  I  I  F  F  </first_frame>
            <second_frame>  N  S  Q  C  G  Q  I  K  I  L  L  S  R :   K  L  L  L  T  M  Q  L  K  H  Q  N  *  V  Y  Q  N  N  L  *  G  V  T  Y  A  A  S  *  M  S  *  V  Q  R  K  G  K  *  S  D  L  D  L  A  L  E  M  A  N  Q  S  L  Y  P  K  *  A  L  F  L  D  C  Q  R  N  E  Y  D  N  *  R  P  E  H  Y  T  S  *  S  R  I  L  T  S  M  A  S  M  H  I  P  I  C  S  F  K  S  Q  S  L  Q  F  T  *  N  D  S  S  C  Y  C  G  *  C  S  R  C  Y  F  E  I  N  S  R  Y  K  L  L  T  S  L  *  V  W  S  K  H  S  N  S  S  G  D  K  N  T  R  *  F  F  P  S  I  L  A  L  I  D  K  V  A  C  H  I  P  I  A  D  E  R  *  *  V  S  R  R  V  S  R  G  A  *  K  L  T  W  T  P  G  K  K  I  W  D  K  C  L  A  V  F  S  F  A  L  Q  N  T  C  D  V  N  M  L  F  L  F  L  P  F  L  S  C  K  V  S  S  C  K  L  F  F  F </second_frame>
            <third_frame>   T  V  S  V  V  R  S  R  Y  Y  F  P   : G  N  Y  C  *  Q  C  N  *  S  T  R  T  E  C  I  K  T  T  Y  E  A  S  H  T  R  P  P  K  C  P  E  S  K  G  K  E  N  N  P  T  *  I  W  H  W  R  W  Q  T  K  V  S  I  R  N  R  R  C  F  W  T  V  K  G  T  S  T  T  T  R  D  P  S  T  I  Q  A  K  A  E  S  *  Q  A  W  P  R  C  I  F  R  F  A  L  L  N  H  S  L  F  N  L  H  K  T  T  R  V  V  T  V  A  D  V  A  D  V  T  L  K  S  T  V  D  T  S  C  S  H  P  C  K  Y  G  A  N  I  Q  I  P  A  E  T  K  T  P  G  D  S  S  H  L  S  *  P  *  S  T  K  L  H  V  I  Y  L  L  L  M  R  G  D  R  Y  P  V  E  S  V  E  V  R  E  S  *  P  G  R  P  E  K  K  Y  G  I  S  V  *  L  F  L  V  L  L  Y  K  I  L  V  M  *  T  C  Y  S  C  S  Y  L  F  Y  L  V  K  Y  Q  V  V  N  Y  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45614" stop="45652"/>
                    <exon start="46334" stop="46621"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="48482" PGL_stop="50849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48482" e_stop="49014"/>
            <exon e_start="49895" e_stop="50849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48482" e_stop="49014" e_length="533"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="49015" i_stop="49894" i_length="880"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49895" e_stop="50849" e_length="955"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48482" stop="49014"/>
              <exon start="49895" stop="49954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48485" stop="49014"/>
              <exon start="49895" stop="50069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48485" stop="49014"/>
              <exon start="49895" stop="49966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48604" stop="49014"/>
              <exon start="49895" stop="50331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48609" stop="49014"/>
              <exon start="49895" stop="50285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48989" stop="49014"/>
              <exon start="49895" stop="50477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50167" stop="50849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGCTTCATCCTCATGCCTTGGTAATTCCATGTCCATATCAAGGTCATATAAACCCAACAATTCATCTAGCCTTAAAACTTGCTTCAAAAGGATTCATTATAACTTTTATCAACACACAATTTATTCATTCCCAAATAACAAAAGCCCATTCACCTTCCTCGTCAGAGCCGTCGGGGCTCGAAAATATCTTCTCAAAACCCTGTGAATCTGGGCTTGATATACGTTATTTAACTATTTCCGATGGATTTCCGTTGGAATTCGATCGGAATATGAATTCGTTGCCATTTTTGGAAGGTTTAATAAATGGGTTTTCGAATTATGTTGATAAACTAGTTGGGGATTTAGCGAAAGAGGATTGTGTTGATCCAATTAATTGTTTGATTGCTGATACTTTCTTCGTTTGGCCATCGATTATCGCAAAAAAATATGAGATTGTTCATGTTTCATTCTTCACTGAGCCAGCTTTGGTTTTTGCTCTCTATTATCACTTGGATTTGCTTGAAGAAAATGGTCACTCTGGCTCTCATG : AAAATAGGAAAGATATTGTTGATTATATTCCTGGAGTTAAATCAATCAAATCAAGTGACTTGCCATCCTTGTACCAAAATTCGGTGGTGCACCAATTAATCTACAAGGCATTTCAAGATGTTCGAAAAGCCGATATAATAATAGCCAACACTGTTCAGGAGCTCGAACCTGAAACCATCACATCGATTCAAGAAAAGCACAAGTTCTACGCCATTGGTCCAATTGTGTCCGCGAATTTCACTGAACTAACTATTTCGAGTAGCCTATGGTCCGAGCACGATTGCACCCAATGGCTCGATGCCAAGCCTCGTGGTTCGGTCTTATACGTCTCGTTTGGGAGTGTGGCTCTTGTTAACAAAGAGGATATTCTTGAATTAGCTCATGGACTTATGCTTAGTGAAGTGAATTTCATTTGGGTACTTAGGTTTAATGTTTTAGGTCAAGACGAAAATGATATTTTGCCCGTTGGATATAAAGAAAAAGTGAAGGATCGAGGGTTGATCGTGCCATGGTGCAACCAACCGAGGGTGATTTCACATTCAGCAGTTGGAGGTTTCTTGAGTCACTGTGGATGGAATTCTGTAGTGGAGAGCATTTGGTGTGGGGTGCCGTTGATTTGTTCTCCGCTTGTCACCGATCAACTCGCTAATCGGAAATTAGTGGTTTATGATTGGAAAGTTGGAATTAATCTTCGTGACGAGGAATCAATCACGAGAGAAGAAGTACGCAGTAAGATTAAATATTTGATGAACGAAGAGACTTCGAATAATTTAAGGAAGAATGTTGCACAAGTGAAAGAGACATTTCATAATACATTAGCTACGAATGGATCATCAAATGTTTATTTTAATAAGTTTGTTGAAGAGTTGAAGATAAAGATTAGTTTAGCTTGAGATGATCTAATCTTAAACCACTGTATTCACGTGAATTCAATAAATTTTATTTAAGTAGTGTA</gDNA_template>
            <first_frame> K  K  A  S  S  S  C  L  G  N  S  M  S  I  S  R  S  Y  K  P  N  N  S  S  S  L  K  T  C  F  K  R  I  H  Y  N  F  Y  Q  H  T  I  Y  S  F  P  N  N  K  S  P  F  T  F  L  V  R  A  V  G  A  R  K  Y  L  L  K  T  L  *  I  W  A  *  Y  T  L  F  N  Y  F  R  W  I  S  V  G  I  R  S  E  Y  E  F  V  A  I  F  G  R  F  N  K  W  V  F  E  L  C  *  *  T  S  W  G  F  S  E  R  G  L  C  *  S  N  *  L  F  D  C  *  Y  F  L  R  L  A  I  D  Y  R  K  K  I  *  D  C  S  C  F  I  L  H  *  A  S  F  G  F  C  S  L  L  S  L  G  F  A  *  R  K  W  S  L  W  L  S  * :   K  *  E  R  Y  C  *  L  Y  S  W  S  *  I  N  Q  I  K  *  L  A  I  L  V  P  K  F  G  G  A  P  I  N  L  Q  G  I  S  R  C  S  K  S  R  Y  N  N  S  Q  H  C  S  G  A  R  T  *  N  H  H  I  D  S  R  K  A  Q  V  L  R  H  W  S  N  C  V  R  E  F  H  *  T  N  Y  F  E  *  P  M  V  R  A  R  L  H  P  M  A  R  C  Q  A  S  W  F  G  L  I  R  L  V  W  E  C  G  S  C  *  Q  R  G  Y  S  *  I  S  S  W  T  Y  A  *  *  S  E  F  H  L  G  T  *  V  *  C  F  R  S  R  R  K  *  Y  F  A  R  W  I  *  R  K  S  E  G  S  R  V  D  R  A  M  V  Q  P  T  E  G  D  F  T  F  S  S  W  R  F  L  E  S  L  W  M  E  F  C  S  G  E  H  L  V  W  G  A  V  D  L  F  S  A  C  H  R  S  T  R  *  S  E  I  S  G  L  *  L  E  S  W  N  *  S  S  *  R  G  I  N  H  E  R  R  S  T  Q  *  D  *  I  F  D  E  R  R  D  F  E  *  F  K  E  E  C  C  T  S  E  R  D  I  S  *  Y  I  S  Y  E  W  I  I  K  C  L  F  *  *  V  C  *  R  V  E  D  K  D  *  F  S  L  R  *  S  N  L  K  P  L  Y  S  R  E  F  N  K  F  Y  L  S  S  V </first_frame>
            <second_frame>  K  K  L  H  P  H  A  L  V  I  P  C  P  Y  Q  G  H  I  N  P  T  I  H  L  A  L  K  L  A  S  K  G  F  I  I  T  F  I  N  T  Q  F  I  H  S  Q  I  T  K  A  H  S  P  S  S  S  E  P  S  G  L  E  N  I  F  S  K  P  C  E  S  G  L  D  I  R  Y  L  T  I  S  D  G  F  P  L  E  F  D  R  N  M  N  S  L  P  F  L  E  G  L  I  N  G  F  S  N  Y  V  D  K  L  V  G  D  L  A  K  E  D  C  V  D  P  I  N  C  L  I  A  D  T  F  F  V  W  P  S  I  I  A  K  K  Y  E  I  V  H  V  S  F  F  T  E  P  A  L  V  F  A  L  Y  Y  H  L  D  L  L  E  E  N  G  H  S  G  S  H   : E  N  R  K  D  I  V  D  Y  I  P  G  V  K  S  I  K  S  S  D  L  P  S  L  Y  Q  N  S  V  V  H  Q  L  I  Y  K  A  F  Q  D  V  R  K  A  D  I  I  I  A  N  T  V  Q  E  L  E  P  E  T  I  T  S  I  Q  E  K  H  K  F  Y  A  I  G  P  I  V  S  A  N  F  T  E  L  T  I  S  S  S  L  W  S  E  H  D  C  T  Q  W  L  D  A  K  P  R  G  S  V  L  Y  V  S  F  G  S  V  A  L  V  N  K  E  D  I  L  E  L  A  H  G  L  M  L  S  E  V  N  F  I  W  V  L  R  F  N  V  L  G  Q  D  E  N  D  I  L  P  V  G  Y  K  E  K  V  K  D  R  G  L  I  V  P  W  C  N  Q  P  R  V  I  S  H  S  A  V  G  G  F  L  S  H  C  G  W  N  S  V  V  E  S  I  W  C  G  V  P  L  I  C  S  P  L  V  T  D  Q  L  A  N  R  K  L  V  V  Y  D  W  K  V  G  I  N  L  R  D  E  E  S  I  T  R  E  E  V  R  S  K  I  K  Y  L  M  N  E  E  T  S  N  N  L  R  K  N  V  A  Q  V  K  E  T  F  H  N  T  L  A  T  N  G  S  S  N  V  Y  F  N  K  F  V  E  E  L  K  I  K  I  S  L  A  *  D  D  L  I  L  N  H  C  I  H  V  N  S  I  N  F  I  *  V  V   </second_frame>
            <third_frame>   K  S  F  I  L  M  P  W  *  F  H  V  H  I  K  V  I  *  T  Q  Q  F  I  *  P  *  N  L  L  Q  K  D  S  L  *  L  L  S  T  H  N  L  F  I  P  K  *  Q  K  P  I  H  L  P  R  Q  S  R  R  G  S  K  I  S  S  Q  N  P  V  N  L  G  L  I  Y  V  I  *  L  F  P  M  D  F  R  W  N  S  I  G  I  *  I  R  C  H  F  W  K  V  *  *  M  G  F  R  I  M  L  I  N  *  L  G  I  *  R  K  R  I  V  L  I  Q  L  I  V  *  L  L  I  L  S  S  F  G  H  R  L  S  Q  K  N  M  R  L  F  M  F  H  S  S  L  S  Q  L  W  F  L  L  S  I  I  T  W  I  C  L  K  K  M  V  T  L  A  L  M  :  K  I  G  K  I  L  L  I  I  F  L  E  L  N  Q  S  N  Q  V  T  C  H  P  C  T  K  I  R  W  C  T  N  *  S  T  R  H  F  K  M  F  E  K  P  I  *  *  *  P  T  L  F  R  S  S  N  L  K  P  S  H  R  F  K  K  S  T  S  S  T  P  L  V  Q  L  C  P  R  I  S  L  N  *  L  F  R  V  A  Y  G  P  S  T  I  A  P  N  G  S  M  P  S  L  V  V  R  S  Y  T  S  R  L  G  V  W  L  L  L  T  K  R  I  F  L  N  *  L  M  D  L  C  L  V  K  *  I  S  F  G  Y  L  G  L  M  F  *  V  K  T  K  M  I  F  C  P  L  D  I  K  K  K  *  R  I  E  G  *  S  C  H  G  A  T  N  R  G  *  F  H  I  Q  Q  L  E  V  S  *  V  T  V  D  G  I  L  *  W  R  A  F  G  V  G  C  R  *  F  V  L  R  L  S  P  I  N  S  L  I  G  N  *  W  F  M  I  G  K  L  E  L  I  F  V  T  R  N  Q  S  R  E  K  K  Y  A  V  R  L  N  I  *  *  T  K  R  L  R  I  I  *  G  R  M  L  H  K  *  K  R  H  F  I  I  H  *  L  R  M  D  H  Q  M  F  I  L  I  S  L  L  K  S  *  R  *  R  L  V  *  L  E  M  I  *  S  *  T  T  V  F  T  *  I  Q  *  I  L  F  K  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48483" stop="49014"/>
                    <exon start="49895" stop="50787"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLHPHALVIPCPYQGHINPTIHLALKLASKGFIITFINTQFIHSQITKAHSPSSSEPSGLENIFSKPCESGLDIRYLTISDGFPLEFDRNMNSLPFLEGLINGFSNYVDKLVGDLAKEDCVDPINCLIADTFFVWPSIIAKKYEIVHVSFFTEPALVFALYYHLDLLEENGHSGSHENRKDIVDYIPGVKSIKSSDLPSLYQNSVVHQLIYKAFQDVRKADIIIANTVQELEPETITSIQEKHKFYAIGPIVSANFTELTISSSLWSEHDCTQWLDAKPRGSVLYVSFGSVALVNKEDILELAHGLMLSEVNFIWVLRFNVLGQDENDILPVGYKEKVKDRGLIVPWCNQPRVISHSAVGGFLSHCGWNSVVESIWCGVPLICSPLVTDQLANRKLVVYDWKVGINLRDEESITREEVRSKIKYLMNEETSNNLRKNVAQVKETFHNTLATNGSSNVYFNKFVEELKIKISLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50455" PGL_stop="49902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50455" e_stop="49902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50455" e_stop="49902" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50455" stop="49902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGAAACCTCCAACTGCTGAATGTGAAATCACCCTCGGTTGGTTGCACCATGGCACGATCAACCCTCGATCCTTCACTTTTTCTTTATATCCAACGGGCAAAATATCATTTTCGTCTTGACCTAAAACATTAAACCTAAGTACCCAAATGAAATTCACTTCACTAAGCATAAGTCCATGAGCTAATTCAAGAATATCCTCTTTGTTAACAAGAGCCACACTCCCAAACGAGACGTATAAGACCGAACCACGAGGCTTGGCATCGAGCCATTGGGTGCAATCGTGCTCGGACCATAGGCTACTCGAAATAGTTAGTTCAGTGAAATTCGCGGACACAATTGGACCAATGGCGTAGAACTTGTGCTTTTCTTGAATCGATGTGATGGTTTCAGGTTCGAGCTCCTGAACAGTGTTGGCTATTATTATATCGGCTTTTCGAACATCTTGAAATGCCTTGTAGATTAATTGGTGCACCACCGAATTTTGGTACAAGGATGGCAAGTCACTTGATTTGATTGATTTAACTCCAGGAATATAATCAACAATATCTTTC</gDNA_template>
            <first_frame> S  R  N  L  Q  L  L  N  V  K  S  P  S  V  G  C  T  M  A  R  S  T  L  D  P  S  L  F  L  Y  I  Q  R  A  K  Y  H  F  R  L  D  L  K  H  *  T  *  V  P  K  *  N  S  L  H  *  A  *  V  H  E  L  I  Q  E  Y  P  L  C  *  Q  E  P  H  S  Q  T  R  R  I  R  P  N  H  E  A  W  H  R  A  I  G  C  N  R  A  R  T  I  G  Y  S  K  *  L  V  Q  *  N  S  R  T  Q  L  D  Q  W  R  R  T  C  A  F  L  E  S  M  *  W  F  Q  V  R  A  P  E  Q  C  W  L  L  L  Y  R  L  F  E  H  L  E  M  P  C  R  L  I  G  A  P  P  N  F  G  T  R  M  A  S  H  L  I  *  L  I  *  L  Q  E  Y  N  Q  Q  Y  L   </first_frame>
            <second_frame>  Q  E  T  S  N  C  *  M  *  N  H  P  R  L  V  A  P  W  H  D  Q  P  S  I  L  H  F  F  F  I  S  N  G  Q  N  I  I  F  V  L  T  *  N  I  K  P  K  Y  P  N  E  I  H  F  T  K  H  K  S  M  S  *  F  K  N  I  L  F  V  N  K  S  H  T  P  K  R  D  V  *  D  R  T  T  R  L  G  I  E  P  L  G  A  I  V  L  G  P  *  A  T  R  N  S  *  F  S  E  I  R  G  H  N  W  T  N  G  V  E  L  V  L  F  L  N  R  C  D  G  F  R  F  E  L  L  N  S  V  G  Y  Y  Y  I  G  F  S  N  I  L  K  C  L  V  D  *  L  V  H  H  R  I  L  V  Q  G  W  Q  V  T  *  F  D  *  F  N  S  R  N  I  I  N  N  I  F  </second_frame>
            <third_frame>   K  K  P  P  T  A  E  C  E  I  T  L  G  W  L  H  H  G  T  I  N  P  R  S  F  T  F  S  L  Y  P  T  G  K  I  S  F  S  S  *  P  K  T  L  N  L  S  T  Q  M  K  F  T  S  L  S  I  S  P  *  A  N  S  R  I  S  S  L  L  T  R  A  T  L  P  N  E  T  Y  K  T  E  P  R  G  L  A  S  S  H  W  V  Q  S  C  S  D  H  R  L  L  E  I  V  S  S  V  K  F  A  D  T  I  G  P  M  A  *  N  L  C  F  S  *  I  D  V  M  V  S  G  S  S  S  *  T  V  L  A  I  I  I  S  A  F  R  T  S  *  N  A  L  *  I  N  W  C  T  T  E  F  W  Y  K  D  G  K  S  L  D  L  I  D  L  T  P  G  I  *  S  T  I  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0116C14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="53177" PGL_stop="56338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53177" e_stop="53730"/>
            <exon e_start="56100" e_stop="56338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="53177" e_stop="53730" e_length="554"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53731" i_stop="56099" i_length="2369"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="56100" e_stop="56338" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53177" stop="53730"/>
              <exon start="56100" stop="56338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53179" stop="53494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTAATCATCATCAACAATGGCGAATCATCACCAAAAACCTCATGCTATTATGATTCCATATCCATATCAAGGTCACATTACTCCTTTTGTGTATTTAGCTATAAAATTAGCTTCACATGGCTTCACAATCACTTTTGTAAACACTCATTATATACATTCTAAGATTTCCAATTCACAATCTAGAGAAAATTCTCAAATAAAAAACAAAGATGATTTGTTTGCTAGAGCTCGTGAATCTGGGCTTGATATTCGTTATGCAACGGTGAATGATGGGTTTCCTTTAGGGTTTGATAGGTCATTGAATCATGACCAATTTGTTGAGGGTTTGTTGCACGTTTTTTCAGCGCATTTTGATGAATTGGTTGGGGATTTGGTGAAATCCGATCCGCCGGTGACGTGTTTGATCGCTGATACGTTTTATGTATGGCCGGCGATGATCGCCGAGAAGTATAATTTGGTTTATGTTTCGTTTTGGACGGAACCTGCTCTGGTTTTTAATCTGTATTATCATATGGAATTGCTCAAAAAAAATGGACATTTTGCTTCTCAAG : ATAACCGAAAGGACACTATAGACTACATACCAGGAGTTAAAGCTATTGAACCAAGAGACTTGATGTCTTATCTCCAAGCAACTGAGATTTGGACTGTGGTTCATAGGGTAATCTACAAGGCCTTTACAGATATTAAAAAGGCTGATATCATCATTTGTAACACAGTCCAAGAACTTGAATTTGATACTCTCTCAGCCCTAAACAAAAACCAGCCCACATATGCTATTGGTCCCATTTTC</gDNA_template>
            <first_frame> I  L  I  I  I  N  N  G  E  S  S  P  K  T  S  C  Y  Y  D  S  I  S  I  S  R  S  H  Y  S  F  C  V  F  S  Y  K  I  S  F  T  W  L  H  N  H  F  C  K  H  S  L  Y  T  F  *  D  F  Q  F  T  I  *  R  K  F  S  N  K  K  Q  R  *  F  V  C  *  S  S  *  I  W  A  *  Y  S  L  C  N  G  E  *  W  V  S  F  R  V  *  *  V  I  E  S  *  P  I  C  *  G  F  V  A  R  F  F  S  A  F  *  *  I  G  W  G  F  G  E  I  R  S  A  G  D  V  F  D  R  *  Y  V  L  C  M  A  G  D  D  R  R  E  V  *  F  G  L  C  F  V  L  D  G  T  C  S  G  F  *  S  V  L  S  Y  G  I  A  Q  K  K  W  T  F  C  F  S  R :   *  P  K  G  H  Y  R  L  H  T  R  S  *  S  Y  *  T  K  R  L  D  V  L  S  P  S  N  *  D  L  D  C  G  S  *  G  N  L  Q  G  L  Y  R  Y  *  K  G  *  Y  H  H  L  *  H  S  P  R  T  *  I  *  Y  S  L  S  P  K  Q  K  P  A  H  I  C  Y  W  S  H  F  </first_frame>
            <second_frame>  S  *  S  S  S  T  M  A  N  H  H  Q  K  P  H  A  I  M  I  P  Y  P  Y  Q  G  H  I  T  P  F  V  Y  L  A  I  K  L  A  S  H  G  F  T  I  T  F  V  N  T  H  Y  I  H  S  K  I  S  N  S  Q  S  R  E  N  S  Q  I  K  N  K  D  D  L  F  A  R  A  R  E  S  G  L  D  I  R  Y  A  T  V  N  D  G  F  P  L  G  F  D  R  S  L  N  H  D  Q  F  V  E  G  L  L  H  V  F  S  A  H  F  D  E  L  V  G  D  L  V  K  S  D  P  P  V  T  C  L  I  A  D  T  F  Y  V  W  P  A  M  I  A  E  K  Y  N  L  V  Y  V  S  F  W  T  E  P  A  L  V  F  N  L  Y  Y  H  M  E  L  L  K  K  N  G  H  F  A  S  Q   : D  N  R  K  D  T  I  D  Y  I  P  G  V  K  A  I  E  P  R  D  L  M  S  Y  L  Q  A  T  E  I  W  T  V  V  H  R  V  I  Y  K  A  F  T  D  I  K  K  A  D  I  I  I  C  N  T  V  Q  E  L  E  F  D  T  L  S  A  L  N  K  N  Q  P  T  Y  A  I  G  P  I  F </second_frame>
            <third_frame>   L  N  H  H  Q  Q  W  R  I  I  T  K  N  L  M  L  L  *  F  H  I  H  I  K  V  T  L  L  L  L  C  I  *  L  *  N  *  L  H  M  A  S  Q  S  L  L  *  T  L  I  I  Y  I  L  R  F  P  I  H  N  L  E  K  I  L  K  *  K  T  K  M  I  C  L  L  E  L  V  N  L  G  L  I  F  V  M  Q  R  *  M  M  G  F  L  *  G  L  I  G  H  *  I  M  T  N  L  L  R  V  C  C  T  F  F  Q  R  I  L  M  N  W  L  G  I  W  *  N  P  I  R  R  *  R  V  *  S  L  I  R  F  M  Y  G  R  R  *  S  P  R  S  I  I  W  F  M  F  R  F  G  R  N  L  L  W  F  L  I  C  I  I  I  W  N  C  S  K  K  M  D  I  L  L  L  K  :  I  T  E  R  T  L  *  T  T  Y  Q  E  L  K  L  L  N  Q  E  T  *  C  L  I  S  K  Q  L  R  F  G  L  W  F  I  G  *  S  T  R  P  L  Q  I  L  K  R  L  I  S  S  F  V  T  Q  S  K  N  L  N  L  I  L  S  Q  P  *  T  K  T  S  P  H  M  L  L  V  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53184" stop="53730"/>
                    <exon start="56100" stop="56338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSTMANHHQKPHAIMIPYPYQGHITPFVYLAIKLASHGFTITFVNTHYIHSKISNSQSRENSQIKNKDDLFARARESGLDIRYATVNDGFPLGFDRSLNHDQFVEGLLHVFSAHFDELVGDLVKSDPPVTCLIADTFYVWPAMIAEKYNLVYVSFWTEPALVFNLYYHMELLKKNGHFASQDNRKDTIDYIPGVKAIEPRDLMSYLQATEIWTVVHRVIYKAFTDIKKADIIICNTVQELEFDTLSALNKNQPTYAIGPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62285" PGL_stop="61643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62285" e_stop="62277"/>
            <exon e_start="62188" e_stop="61643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62285" e_stop="62277" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62276" i_stop="62189" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="62188" e_stop="61643" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62285" stop="62277"/>
              <exon start="62188" stop="61643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCACATG : GTGGCCCATAGAAGAGAACACCCTTAGAAGGAGACATACCAAACTTCTCGAACTTCTCGGGATGTTCCACAGGATATTGAACAGTCTACAAAACAAATAAAAGATTAGGTCAGGTAAATCAACAAGGTTAACAGGTTAGCAGATCATAATATTCATCATTTTATGTTTAGTATATATGTACCTCTTGAAGCTCACGCTTGACATTCTCAAGGCCTCCAATGTCCTCCCAGGAGATATTAGGAACTTCAACAACCTGTTCCGCCATACGTCATAATTAGGAAACGAGTGGAGGATATGTAGTAGGAGAAGCCTTGAACGAAAAGAAATGTAGACTTACAGTTTCACGCAGGGCAGATGGATTGCTTGTCCCAAGAGCAGTTGAGAAGTGCTCGTTGGTCACAGCCATTGAATTTAATATCTCTGCGTCGATAGATTCATCTTCCAAATCAATCACATCCATCTTCTCTCTGATGCACTGAAGTGCAGCCTCAGTACACAAAGCTGCCAAATCCGCACCAACATAACCATGTGTTTCTTTGCAAATCC</gDNA_template>
            <first_frame> N  H  M  :  V  A  H  R  R  E  H  P  *  K  E  T  Y  Q  T  S  R  T  S  R  D  V  P  Q  D  I  E  Q  S  T  K  Q  I  K  D  *  V  R  *  I  N  K  V  N  R  L  A  D  H  N  I  H  H  F  M  F  S  I  Y  V  P  L  E  A  H  A  *  H  S  Q  G  L  Q  C  P  P  R  R  Y  *  E  L  Q  Q  P  V  P  P  Y  V  I  I  R  K  R  V  E  D  M  *  *  E  K  P  *  T  K  R  N  V  D  L  Q  F  H  A  G  Q  M  D  C  L  S  Q  E  Q  L  R  S  A  R  W  S  Q  P  L  N  L  I  S  L  R  R  *  I  H  L  P  N  Q  S  H  P  S  S  L  *  C  T  E  V  Q  P  Q  Y  T  K  L  P  N  P  H  Q  H  N  H  V  F  L  C  K  S </first_frame>
            <second_frame>  T  T  W :   W  P  I  E  E  N  T  L  R  R  R  H  T  K  L  L  E  L  L  G  M  F  H  R  I  L  N  S  L  Q  N  K  *  K  I  R  S  G  K  S  T  R  L  T  G  *  Q  I  I  I  F  I  I  L  C  L  V  Y  M  Y  L  L  K  L  T  L  D  I  L  K  A  S  N  V  L  P  G  D  I  R  N  F  N  N  L  F  R  H  T  S  *  L  G  N  E  W  R  I  C  S  R  R  S  L  E  R  K  E  M  *  T  Y  S  F  T  Q  G  R  W  I  A  C  P  K  S  S  *  E  V  L  V  G  H  S  H  *  I  *  Y  L  C  V  D  R  F  I  F  Q  I  N  H  I  H  L  L  S  D  A  L  K  C  S  L  S  T  Q  S  C  Q  I  R  T  N  I  T  M  C  F  F  A  N   </second_frame>
            <third_frame>   P  H   : G  G  P  *  K  R  T  P  L  E  G  D  I  P  N  F  S  N  F  S  G  C  S  T  G  Y  *  T  V  Y  K  T  N  K  R  L  G  Q  V  N  Q  Q  G  *  Q  V  S  R  S  *  Y  S  S  F  Y  V  *  Y  I  C  T  S  *  S  S  R  L  T  F  S  R  P  P  M  S  S  Q  E  I  L  G  T  S  T  T  C  S  A  I  R  H  N  *  E  T  S  G  G  Y  V  V  G  E  A  L  N  E  K  K  C  R  L  T  V  S  R  R  A  D  G  L  L  V  P  R  A  V  E  K  C  S  L  V  T  A  I  E  F  N  I  S  A  S  I  D  S  S  S  K  S  I  T  S  I  F  S  L  M  H  *  S  A  A  S  V  H  K  A  A  K  S  A  P  T  *  P  C  V  S  L  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61910" stop="61710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETSGGYVVGEALNEKKCRLTVSRRADGLLVPRAVEKCSLVTAIEFNISASIDSSSKSITSIFSLMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80230" PGL_stop="80690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80230" e_stop="80690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="80230" e_stop="80690" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80230" stop="80690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATGTCTTTGCTGAAGCTCCTTGATAAAAAAAATAATAATTATATTTTGTAAGTGATACGTATTTATTATCTGTTTTAATTTGTGAGATGTGAATAATAGATGTTATTACGTGTGAGTACAATCAGTTGAATTTGTTGTTTTTAGCTTGATATGTAGATACAACGTTATTCCTTTAAAAAAAAAAAAACCTTTTATCTGTTGAATTTATTTTGAATTTACTAGTTATATATTTCCAAGGAACAATTTTGTTGAAATAATAGTGGATAAGATTTTATCTACAATATTAAAGATAATATTTGTTATTGAAGTCAAAGTCTTTGTTAAAGTTTCTTGAAAAATTATTATTTGTAAGTTTGTAATATATGGGGTATAATTAGTTTTAATTTTAGGGCTTAATTTGCGGTGATGATTAAAAATTTTCGATTTAATTAGAGATTTATTTGAGGAGTGTTAGTAG</gDNA_template>
            <first_frame> V  N  V  F  A  E  A  P  *  *  K  K  *  *  L  Y  F  V  S  D  T  Y  L  L  S  V  L  I  C  E  M  *  I  I  D  V  I  T  C  E  Y  N  Q  L  N  L  L  F  L  A  *  Y  V  D  T  T  L  F  L  *  K  K  K  N  L  L  S  V  E  F  I  L  N  L  L  V  I  Y  F  Q  G  T  I  L  L  K  *  *  W  I  R  F  Y  L  Q  Y  *  R  *  Y  L  L  L  K  S  K  S  L  L  K  F  L  E  K  L  L  F  V  S  L  *  Y  M  G  Y  N  *  F  *  F  *  G  L  I  C  G  D  D  *  K  F  S  I  *  L  E  I  Y  L  R  S  V  S   </first_frame>
            <second_frame>  S  M  S  L  L  K  L  L  D  K  K  N  N  N  Y  I  L  *  V  I  R  I  Y  Y  L  F  *  F  V  R  C  E  *  *  M  L  L  R  V  S  T  I  S  *  I  C  C  F  *  L  D  M  *  I  Q  R  Y  S  F  K  K  K  K  T  F  Y  L  L  N  L  F  *  I  Y  *  L  Y  I  S  K  E  Q  F  C  *  N  N  S  G  *  D  F  I  Y  N  I  K  D  N  I  C  Y  *  S  Q  S  L  C  *  S  F  L  K  N  Y  Y  L  *  V  C  N  I  W  G  I  I  S  F  N  F  R  A  *  F  A  V  M  I  K  N  F  R  F  N  *  R  F  I  *  G  V  L  V  </second_frame>
            <third_frame>   Q  C  L  C  *  S  S  L  I  K  K  I  I  I  I  F  C  K  *  Y  V  F  I  I  C  F  N  L  *  D  V  N  N  R  C  Y  Y  V  *  V  Q  S  V  E  F  V  V  F  S  L  I  C  R  Y  N  V  I  P  L  K  K  K  K  P  F  I  C  *  I  Y  F  E  F  T  S  Y  I  F  P  R  N  N  F  V  E  I  I  V  D  K  I  L  S  T  I  L  K  I  I  F  V  I  E  V  K  V  F  V  K  V  S  *  K  I  I  I  C  K  F  V  I  Y  G  V  *  L  V  L  I  L  G  L  N  L  R  *  *  L  K  I  F  D  L  I  R  D  L  F  E  E  C  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0116C14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="82099" PGL_stop="89737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82099" e_stop="82441"/>
            <exon e_start="84682" e_stop="84909"/>
            <exon e_start="89717" e_stop="89737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82099" e_stop="82441" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82442" i_stop="84681" i_length="2240"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="84682" e_stop="84909" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84910" i_stop="89716" i_length="4807"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="89717" e_stop="89737" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82099" stop="82441"/>
              <exon start="84682" stop="84909"/>
              <exon start="89717" stop="89737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82100" stop="82257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAAAAAAAAATGTTTTCTTCTTCTTCAGCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCG : AAATCTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACATATATCAATAAAATCGAGTTAATAT : GTCAAAAATGAAAAAAAATTT</gDNA_template>
            <first_frame> F  L  K  K  N  V  F  F  F  F  S  I  I  K  S  I  S  P  G  E  N  S  G  D  R  R  R  K  I  E  N  K  C  E  I  S  D  V  G  D  V  Y  G  G  *  R  I  R  *  S  E  R  F  G  E  I  D  *  K  S  M  G  R  *  *  *  L  C  I  T  L  L  *  F  N  *  N  E  *  *  L  F  I  I  F  L  *  F  E  R  W  L  Y  Y  Y  R  I  S  S  R  *  T  T  S  S  S  S  S  S  S  S  S  S  I   : E  I  F  M  *  N  Q  E  K  C  Q  I  S  R  G  D  K  Q  H  L  Q  W  *  N  *  W  L  S  K  L  F  I  S  Y  G  K  D  V  I  S  I  L  L  F  H  I  F  K  T  L  N  Y  V  S  E  R  K  W  K  E  F  E  R  R  I  V  V  T  Y  I  N  K  I  E  L  I   : C  Q  K  *  K  K  I  </first_frame>
            <second_frame>  F  *  K  K  M  F  S  S  S  S  A  S  S  N  P  S  L  R  V  K  I  P  V  T  G  E  G  K  L  R  I  N  V  K  S  P  T  S  E  M  Y  T  E  V  K  E  S  D  K  V  K  D  L  E  K  L  I  K  K  A  W  G  D  N  D  N  Y  V  S  L  Y  Y  N  S  I  K  M  N  S  D  Y  L  L  S  F  Y  N  L  R  D  G  S  I  I  T  V  S  L  L  A  E  P  P  H  H  H  H  H  R  L  H  H  Q  S  :  K  S  S  C  E  T  K  K  N  V  K  F  Q  E  E  T  N  S  T  S  N  G  E  I  N  G  C  Q  S  F  L  F  H  M  A  K  M  S  S  Q  F  C  S  S  I  F  S  R  H  *  I  M  Y  L  R  E  S  G  R  S  S  K  D  E  S  S  L  H  I  S  I  K  S  S  *  Y  :  V  K  N  E  K  K  F </second_frame>
            <third_frame>   F  K  K  K  C  F  L  L  L  Q  H  H  Q  I  H  L  S  G  *  K  F  R  *  P  E  K  E  N  *  E  *  M  *  N  L  R  R  R  R  C  I  R  R  L  K  N  Q  I  K  *  K  I  W  R  N  *  L  K  K  H  G  E  I  M  I  I  M  Y  H  F  I  I  I  Q  L  K  *  I  V  I  I  Y  Y  L  F  I  I  *  E  M  A  L  L  L  P  Y  L  F  S  L  N  H  L  I  I  I  I  I  V  F  I  I  N  R :   N  L  H  V  K  P  R  K  M  S  N  F  K  R  R  Q  T  A  P  P  M  V  K  L  M  V  V  K  A  F  Y  F  I  W  Q  R  C  H  L  N  F  A  L  P  Y  F  Q  D  I  K  L  C  I  *  E  K  V  E  G  V  R  K  T  N  R  R  Y  I  Y  Q  *  N  R  V  N  M :   S  K  M  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82106" stop="82441"/>
                    <exon start="84682" stop="84831"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMFSSSSASSNPSLRVKIPVTGEGKLRINVKSPTSEMYTEVKESDKVKDLEKLIKKAWGDNDNYVSLYYNSIKMNSDYLLSFYNLRDGSIITVSLLAEPPHHHHHRLHHQSKSSCETKKNVKFQEETNSTSNGEINGCQSFLFHMAKMSSQFCSSIFSRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82099" e_stop="82441"/>
            <exon e_start="84682" e_stop="84907"/>
            <exon e_start="86450" e_stop="86472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.502" e_score="0.991"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82099" e_stop="82441" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82442" i_stop="84681" i_length="2240"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="84682" e_stop="84907" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.502">
            <gDNA_intron_boundary i_start="84908" i_stop="86449" i_length="1542"/>
          </intron>
          <exon e_serial="3" e_score="0.565">
            <gDNA_exon_boundary e_start="86450" e_stop="86472" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82099" stop="82441"/>
              <exon start="84682" stop="84907"/>
              <exon start="86450" stop="86472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82100" stop="82257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAAAAAAAAATGTTTTCTTCTTCTTCAGCATCATCAAATCCATCTCTCCGGGTGAAAATTCCGGTGACCGGAGAAGGAAAATTGAGAATAAATGTGAAATCTCCGACGTCGGAGATGTATACGGAGGTTAAAGAATCAGATAAAGTGAAAGATTTGGAGAAATTGATTAAAAAAGCATGGGGAGATAATGATAATTATGTATCACTTTATTATAATTCAATTAAAATGAATAGTGATTATTTATTATCTTTTTATAATTTGAGAGATGGCTCTATTATTACCGTATCTCTTCTCGCTGAACCACCTCATCATCATCATCATCGTCTTCATCATCAATCG : AAATCTTCATGTGAAACCAAGAAAAATGTCAAATTTCAAGAGGAGACAAACAGCACCTCCAATGGTGAAATTAATGGTTGTCAAAGCTTTTTATTTCATATGGCAAAGATGTCATCTCAATTTTGCTCTTCCATATTTTCAAGACATTAAATTATGTATCTGAGAGAAAGTGGAAGGAGTTCGAAAGACGAATCGTCGTTACATATATCAATAAAATCGAGTTAAT : ATTCCGACGTAAAAAATGCCAAA</gDNA_template>
            <first_frame> F  L  K  K  N  V  F  F  F  F  S  I  I  K  S  I  S  P  G  E  N  S  G  D  R  R  R  K  I  E  N  K  C  E  I  S  D  V  G  D  V  Y  G  G  *  R  I  R  *  S  E  R  F  G  E  I  D  *  K  S  M  G  R  *  *  *  L  C  I  T  L  L  *  F  N  *  N  E  *  *  L  F  I  I  F  L  *  F  E  R  W  L  Y  Y  Y  R  I  S  S  R  *  T  T  S  S  S  S  S  S  S  S  S  S  I   : E  I  F  M  *  N  Q  E  K  C  Q  I  S  R  G  D  K  Q  H  L  Q  W  *  N  *  W  L  S  K  L  F  I  S  Y  G  K  D  V  I  S  I  L  L  F  H  I  F  K  T  L  N  Y  V  S  E  R  K  W  K  E  F  E  R  R  I  V  V  T  Y  I  N  K  I  E  L  I :   F  R  R  K  K  C  Q  </first_frame>
            <second_frame>  F  *  K  K  M  F  S  S  S  S  A  S  S  N  P  S  L  R  V  K  I  P  V  T  G  E  G  K  L  R  I  N  V  K  S  P  T  S  E  M  Y  T  E  V  K  E  S  D  K  V  K  D  L  E  K  L  I  K  K  A  W  G  D  N  D  N  Y  V  S  L  Y  Y  N  S  I  K  M  N  S  D  Y  L  L  S  F  Y  N  L  R  D  G  S  I  I  T  V  S  L  L  A  E  P  P  H  H  H  H  H  R  L  H  H  Q  S  :  K  S  S  C  E  T  K  K  N  V  K  F  Q  E  E  T  N  S  T  S  N  G  E  I  N  G  C  Q  S  F  L  F  H  M  A  K  M  S  S  Q  F  C  S  S  I  F  S  R  H  *  I  M  Y  L  R  E  S  G  R  S  S  K  D  E  S  S  L  H  I  S  I  K  S  S  *   : Y  S  D  V  K  N  A  K </second_frame>
            <third_frame>   F  K  K  K  C  F  L  L  L  Q  H  H  Q  I  H  L  S  G  *  K  F  R  *  P  E  K  E  N  *  E  *  M  *  N  L  R  R  R  R  C  I  R  R  L  K  N  Q  I  K  *  K  I  W  R  N  *  L  K  K  H  G  E  I  M  I  I  M  Y  H  F  I  I  I  Q  L  K  *  I  V  I  I  Y  Y  L  F  I  I  *  E  M  A  L  L  L  P  Y  L  F  S  L  N  H  L  I  I  I  I  I  V  F  I  I  N  R :   N  L  H  V  K  P  R  K  M  S  N  F  K  R  R  Q  T  A  P  P  M  V  K  L  M  V  V  K  A  F  Y  F  I  W  Q  R  C  H  L  N  F  A  L  P  Y  F  Q  D  I  K  L  C  I  *  E  K  V  E  G  V  R  K  T  N  R  R  Y  I  Y  Q  *  N  R  V  N  :  I  P  T  *  K  M  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82106" stop="82441"/>
                    <exon start="84682" stop="84831"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMFSSSSASSNPSLRVKIPVTGEGKLRINVKSPTSEMYTEVKESDKVKDLEKLIKKAWGDNDNYVSLYYNSIKMNSDYLLSFYNLRDGSIITVSLLAEPPHHHHHRLHHQSKSSCETKKNVKFQEETNSTSNGEINGCQSFLFHMAKMSSQFCSSIFSRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96461" PGL_stop="85507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96461" e_stop="96341"/>
            <exon e_start="95644" e_stop="95616"/>
            <exon e_start="91319" e_stop="91269"/>
            <exon e_start="87447" e_stop="87392"/>
            <exon e_start="86038" e_stop="86017"/>
            <exon e_start="85880" e_stop="85507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.839" acc_prob="0.455" e_score="0.517"/>
          <exon-intron don_prob="0.525" acc_prob="0.000" e_score="0.549"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.607"/>
          <exon-intron don_prob="0.945" acc_prob="0.000" e_score="0.545"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="96461" e_stop="96341" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96340" i_stop="95645" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.517">
            <gDNA_exon_boundary e_start="95644" e_stop="95616" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.839" acc_prob="0.455">
            <gDNA_intron_boundary i_start="95615" i_stop="91320" i_length="4296"/>
          </intron>
          <exon e_serial="3" e_score="0.549">
            <gDNA_exon_boundary e_start="91319" e_stop="91269" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.525" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91268" i_stop="87448" i_length="3821"/>
          </intron>
          <exon e_serial="4" e_score="0.607">
            <gDNA_exon_boundary e_start="87447" e_stop="87392" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87391" i_stop="86039" i_length="1353"/>
          </intron>
          <exon e_serial="5" e_score="0.545">
            <gDNA_exon_boundary e_start="86038" e_stop="86017" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86016" i_stop="85881" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="85880" e_stop="85507" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96461" stop="96341"/>
              <exon start="95644" stop="95616"/>
              <exon start="91319" stop="91269"/>
              <exon start="87447" stop="87392"/>
              <exon start="86038" stop="86017"/>
              <exon start="85880" stop="85507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATTATATTTTTCACTTGGTAGCTTGTTTAGTCCAAGCAAACAAGATGTTATGGAATTTGCTCAAGGAATATTGCTTAGCAAAGTGGAATATTTTATTTGGGTACTTAGACCTAATTTG : GTCTTGACGGACGTCCACATAAAAATTTG : TGTGCTATAGCACACGAAAATCGTCGAAATGAGGCGTCTGCTCGTTTCGGG : ATGGGTTGGACAAGCCGTGATGGCCAACCGTATGCATAGAAAAGGTCTTGACGGAC : TGAGGCGTATGCTCGCTTCGGG : AGAGCTTATGGGCAAGTGTACCAATGGTATGTCATCTTATAAGTGTTGATCAACAAACTAATAGAAAGTTGGTGGTTGATGATTGGAAAGTTGGGATTAATCTTTGTGATAATTATGATATTAATAATAAATCAATTATTACAAAGGAGGAAATAGCAAAAAAGATTAATTTTCTTATGAGTGAAGAAAACTCAAAAGATTTGAGGAAGGTTATAAAGGAAGTGAAGAAAACTATGGAAATTGCAATATTAGCCAATGGAAGTTCAGAGAAAAACTTTGATTTGTTTGTTGAGGATGTAATGGCCAAAACAAAAATGGTTATTTTTTAAAACTTAATCTACATTATATTGGCTACTTTTGTAATAAAGCCTTGA</gDNA_template>
            <first_frame> S  I  I  F  F  T  W  *  L  V  *  S  K  Q  T  R  C  Y  G  I  C  S  R  N  I  A  *  Q  S  G  I  F  Y  L  G  T  *  T  *  F   : G  L  D  G  R  P  H  K  N  L  :  C  A  I  A  H  E  N  R  R  N  E  A  S  A  R  F  G  :  M  G  W  T  S  R  D  G  Q  P  Y  A  *  K  R  S  *  R  T :   E  A  Y  A  R  F  G  :  R  A  Y  G  Q  V  Y  Q  W  Y  V  I  L  *  V  L  I  N  K  L  I  E  S  W  W  L  M  I  G  K  L  G  L  I  F  V  I  I  M  I  L  I  I  N  Q  L  L  Q  R  R  K  *  Q  K  R  L  I  F  L  *  V  K  K  T  Q  K  I  *  G  R  L  *  R  K  *  R  K  L  W  K  L  Q  Y  *  P  M  E  V  Q  R  K  T  L  I  C  L  L  R  M  *  W  P  K  Q  K  W  L  F  F  K  T  *  S  T  L  Y  W  L  L  L  *  *  S  L   </first_frame>
            <second_frame>  V  L  Y  F  S  L  G  S  L  F  S  P  S  K  Q  D  V  M  E  F  A  Q  G  I  L  L  S  K  V  E  Y  F  I  W  V  L  R  P  N  L  :  V  L  T  D  V  H  I  K  I  C :   V  L  *  H  T  K  I  V  E  M  R  R  L  L  V  S  G :   W  V  G  Q  A  V  M  A  N  R  M  H  R  K  G  L  D  G   : L  R  R  M  L  A  S  G :   E  L  M  G  K  C  T  N  G  M  S  S  Y  K  C  *  S  T  N  *  *  K  V  G  G  *  *  L  E  S  W  D  *  S  L  *  *  L  *  Y  *  *  *  I  N  Y  Y  K  G  G  N  S  K  K  D  *  F  S  Y  E  *  R  K  L  K  R  F  E  E  G  Y  K  G  S  E  E  N  Y  G  N  C  N  I  S  Q  W  K  F  R  E  K  L  *  F  V  C  *  G  C  N  G  Q  N  K  N  G  Y  F  L  K  L  N  L  H  Y  I  G  Y  F  C  N  K  A  L  </second_frame>
            <third_frame>   Y  Y  I  F  H  L  V  A  C  L  V  Q  A  N  K  M  L  W  N  L  L  K  E  Y  C  L  A  K  W  N  I  L  F  G  Y  L  D  L  I  W :   S  *  R  T  S  T  *  K  F   : V  C  Y  S  T  R  K  S  S  K  *  G  V  C  S  F  R   : D  G  L  D  K  P  *  W  P  T  V  C  I  E  K  V  L  T  D  :  *  G  V  C  S  L  R   : E  S  L  W  A  S  V  P  M  V  C  H  L  I  S  V  D  Q  Q  T  N  R  K  L  V  V  D  D  W  K  V  G  I  N  L  C  D  N  Y  D  I  N  N  K  S  I  I  T  K  E  E  I  A  K  K  I  N  F  L  M  S  E  E  N  S  K  D  L  R  K  V  I  K  E  V  K  K  T  M  E  I  A  I  L  A  N  G  S  S  E  K  N  F  D  L  F  V  E  D  V  M  A  K  T  K  M  V  I  F  *  N  L  I  Y  I  I  L  A  T  F  V  I  K  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86035" stop="86017"/>
                    <exon start="85880" stop="85552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVCSLRESLWASVPMVCHLISVDQQTNRKLVVDDWKVGINLCDNYDINNKSIITKEEIAKKINFLMSEENSKDLRKVIKEVKKTMEIAILANGSSEKNFDLFVEDVMAKTKMVIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="98239" PGL_stop="96546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98239" e_stop="97719"/>
            <exon e_start="96807" e_stop="96546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.983" e_score="0.994"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="98239" e_stop="97719" e_length="521"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.983">
            <gDNA_intron_boundary i_start="97718" i_stop="96808" i_length="911"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="96807" e_stop="96546" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98239" stop="97719"/>
              <exon start="96807" stop="96546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98238" stop="97719"/>
              <exon start="96807" stop="96734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAACCAAAAACCTCATGCAATAGTAATTCCATGCCCATTTCAAGGCCACATAAACCCTAGTATTCACCTTTCACTAAAACTTGCAACAAAAGGCTTTACCATAACATTTATCAACACAAAGTATAGCCATGCCCAAATAACCAAATCACAAAAATTAGACCAAACTCATAACATATTTGCAAAATTTCAAGAACTTGGCCTTGACATACATTATCAAACAGTTTGTGATGGTTTTCCCTTAGAATTCGATCGATTTTCGGGGTCGAATACCGAGAAGTTTTGGGAAGGATTTTTACTAAATTACCCTTTTCATGTTGATGAAATTGTTGGGAAGTTAGTAGAATTGGATAGCCCTAGGCCAACTTGTTTGATTGTTGACACTTTCTATGGTTGGGGGACAACAATTGCTAATAAGTATGGACTTGTTAGTGTTTCATTCTTCACTCAACCTGCCTTGGTGTTTACTATAGACTATCATCTTGACCTTTTGCTCAAAAATGGTCATTTTGGCTAAATTG : ATAATAGGAAGGATACCATATATTCTATACCAGGAATTTCAGCAATTGATCCAAGTGATTTACCTTCATATTTACAAACAAAAGAGACATCAACTATTCTTCATCAAATTATCTACAAAGGTTTTGAAGAAGCCAAGAAATCAGACATTATAATTTGTAACACAATACAAGAACTTGAATCCAAAGTAATTTCAATATTCCAAGAAAAAACAAAAAAACCCTTTTTTGCTATTGGTCCAATTTTTCATGATCATCAAGTCAA</gDNA_template>
            <first_frame> K  Q  P  K  T  S  C  N  S  N  S  M  P  I  S  R  P  H  K  P  *  Y  S  P  F  T  K  T  C  N  K  R  L  Y  H  N  I  Y  Q  H  K  V  *  P  C  P  N  N  Q  I  T  K  I  R  P  N  S  *  H  I  C  K  I  S  R  T  W  P  *  H  T  L  S  N  S  L  *  W  F  S  L  R  I  R  S  I  F  G  V  E  Y  R  E  V  L  G  R  I  F  T  K  L  P  F  S  C  *  *  N  C  W  E  V  S  R  I  G  *  P  *  A  N  L  F  D  C  *  H  F  L  W  L  G  D  N  N  C  *  *  V  W  T  C  *  C  F  I  L  H  S  T  C  L  G  V  Y  Y  R  L  S  S  *  P  F  A  Q  K  W  S  F  W  L  N  * :   *  *  E  G  Y  H  I  F  Y  T  R  N  F  S  N  *  S  K  *  F  T  F  I  F  T  N  K  R  D  I  N  Y  S  S  S  N  Y  L  Q  R  F  *  R  S  Q  E  I  R  H  Y  N  L  *  H  N  T  R  T  *  I  Q  S  N  F  N  I  P  R  K  N  K  K  T  L  F  C  Y  W  S  N  F  S  *  S  S  S  Q </first_frame>
            <second_frame>  S  N  Q  K  P  H  A  I  V  I  P  C  P  F  Q  G  H  I  N  P  S  I  H  L  S  L  K  L  A  T  K  G  F  T  I  T  F  I  N  T  K  Y  S  H  A  Q  I  T  K  S  Q  K  L  D  Q  T  H  N  I  F  A  K  F  Q  E  L  G  L  D  I  H  Y  Q  T  V  C  D  G  F  P  L  E  F  D  R  F  S  G  S  N  T  E  K  F  W  E  G  F  L  L  N  Y  P  F  H  V  D  E  I  V  G  K  L  V  E  L  D  S  P  R  P  T  C  L  I  V  D  T  F  Y  G  W  G  T  T  I  A  N  K  Y  G  L  V  S  V  S  F  F  T  Q  P  A  L  V  F  T  I  D  Y  H  L  D  L  L  L  K  N  G  H  F  G  *  I   : D  N  R  K  D  T  I  Y  S  I  P  G  I  S  A  I  D  P  S  D  L  P  S  Y  L  Q  T  K  E  T  S  T  I  L  H  Q  I  I  Y  K  G  F  E  E  A  K  K  S  D  I  I  I  C  N  T  I  Q  E  L  E  S  K  V  I  S  I  F  Q  E  K  T  K  K  P  F  F  A  I  G  P  I  F  H  D  H  Q  V   </second_frame>
            <third_frame>   A  T  K  N  L  M  Q  *  *  F  H  A  H  F  K  A  T  *  T  L  V  F  T  F  H  *  N  L  Q  Q  K  A  L  P  *  H  L  S  T  Q  S  I  A  M  P  K  *  P  N  H  K  N  *  T  K  L  I  T  Y  L  Q  N  F  K  N  L  A  L  T  Y  I  I  K  Q  F  V  M  V  F  P  *  N  S  I  D  F  R  G  R  I  P  R  S  F  G  K  D  F  Y  *  I  T  L  F  M  L  M  K  L  L  G  S  *  *  N  W  I  A  L  G  Q  L  V  *  L  L  T  L  S  M  V  G  G  Q  Q  L  L  I  S  M  D  L  L  V  F  H  S  S  L  N  L  P  W  C  L  L  *  T  I  I  L  T  F  C  S  K  M  V  I  L  A  K  L  :  I  I  G  R  I  P  Y  I  L  Y  Q  E  F  Q  Q  L  I  Q  V  I  Y  L  H  I  Y  K  Q  K  R  H  Q  L  F  F  I  K  L  S  T  K  V  L  K  K  P  R  N  Q  T  L  *  F  V  T  Q  Y  K  N  L  N  P  K  *  F  Q  Y  S  K  K  K  Q  K  N  P  F  L  L  L  V  Q  F  F  M  I  I  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98238" stop="97723"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNQKPHAIVIPCPFQGHINPSIHLSLKLATKGFTITFINTKYSHAQITKSQKLDQTHNIFAKFQELGLDIHYQTVCDGFPLEFDRFSGSNTEKFWEGFLLNYPFHVDEIVGKLVELDSPRPTCLIVDTFYGWGTTIANKYGLVSVSFFTQPALVFTIDYHLDLLLKNGHFG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97722" stop="97719"/>
                    <exon start="96807" stop="96548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDNRKDTIYSIPGISAIDPSDLPSYLQTKETSTILHQIIYKGFEEAKKSDIIICNTIQELESKVISIFQEKTKKPFFAIGPIFHDHQV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="105453" PGL_stop="100004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105453" e_stop="105395"/>
            <exon e_start="105285" e_stop="105238"/>
            <exon e_start="105119" e_stop="105010"/>
            <exon e_start="104544" e_stop="104460"/>
            <exon e_start="104357" e_stop="104084"/>
            <exon e_start="103521" e_stop="103387"/>
            <exon e_start="103288" e_stop="103137"/>
            <exon e_start="103038" e_stop="102800"/>
            <exon e_start="102714" e_stop="102384"/>
            <exon e_start="101169" e_stop="100750"/>
            <exon e_start="100675" e_stop="100544"/>
            <exon e_start="100425" e_stop="100004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.320" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.459" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.938" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.512" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105453" e_stop="105395" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.983">
            <gDNA_intron_boundary i_start="105394" i_stop="105286" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105285" e_stop="105238" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105237" i_stop="105120" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105119" e_stop="105010" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.320" acc_prob="0.918">
            <gDNA_intron_boundary i_start="105009" i_stop="104545" i_length="465"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104544" e_stop="104460" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.459" acc_prob="0.789">
            <gDNA_intron_boundary i_start="104459" i_stop="104358" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104357" e_stop="104084" e_length="274"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104083" i_stop="103522" i_length="562"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="103521" e_stop="103387" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="103386" i_stop="103289" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="103288" e_stop="103137" e_length="152"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.938">
            <gDNA_intron_boundary i_start="103136" i_stop="103039" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="103038" e_stop="102800" e_length="239"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="102799" i_stop="102715" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102714" e_stop="102384" e_length="331"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="102383" i_stop="101170" i_length="1214"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="101169" e_stop="100750" e_length="420"/>
          </exon>
          <intron i_serial="10" don_prob="0.955" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100749" i_stop="100676" i_length="74"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="100675" e_stop="100544" e_length="132"/>
          </exon>
          <intron i_serial="11" don_prob="0.991" acc_prob="0.512">
            <gDNA_intron_boundary i_start="100543" i_stop="100426" i_length="118"/>
          </intron>
          <exon e_serial="12" e_score="0.993">
            <gDNA_exon_boundary e_start="100425" e_stop="100004" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105453" stop="105395"/>
              <exon start="105285" stop="105238"/>
              <exon start="105119" stop="105010"/>
              <exon start="104544" stop="104460"/>
              <exon start="104357" stop="104084"/>
              <exon start="103521" stop="103387"/>
              <exon start="103288" stop="103238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103519" stop="103387"/>
              <exon start="103288" stop="103137"/>
              <exon start="103038" stop="102824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103016" stop="102800"/>
              <exon start="102714" stop="102384"/>
              <exon start="101169" stop="100836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100989" stop="100750"/>
              <exon start="100675" stop="100544"/>
              <exon start="100425" stop="100087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100989" stop="100750"/>
              <exon start="100675" stop="100544"/>
              <exon start="100425" stop="100150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100989" stop="100750"/>
              <exon start="100675" stop="100544"/>
              <exon start="100425" stop="100257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100989" stop="100750"/>
              <exon start="100675" stop="100544"/>
              <exon start="100425" stop="100292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100989" stop="100750"/>
              <exon start="100675" stop="100548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100860" stop="100750"/>
              <exon start="100675" stop="100544"/>
              <exon start="100425" stop="100004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCATGGACACGTCAGGAGGAAGAAAGCTTTTTCTCTGCACTGCGACAAGTTGGGAAG : AATTTTGAGAAAATTACTAGTCGCGTGCAGAGCAAAAACAAGGATCAG : GTCAGACATTATTATTATCGTCTAGTGAGGCGTATGAACAAGTTGTTGGGTCCAGAACTTTGTCTTGATGCCAAAAATTCCAAGGATACTAATGCTGCAATGTTGCGATG : GTGGTCTTTACTGGAAAAATATAGCTGTAAAGCCTCAAAGCTTCATTTGAAACCACGGAGGTTTAAAATATTTATTGAAACTTTG : GAGAGTCAGCTGTTGAAAGACCGGAAAAAGAATGTAAGAAGGCGTCCTTCTCAAGGAGAAAGTAGTTCTACAGCTGCTGGATCTCCTTCAAGTCATGGCAGAGTGTCAACTAATGATAGTCGGACAGTTAAAGTGGTTCTTCTTGACAACCAGGATGTACAGAAATTTGGATCTGGAAAAGGCTCTTCTATAAAACGCCATGTCATGGGTGTCAATAGAAGCAATGCAAAAGTAGACTCTTCTGTGAAAAATGCTAGACATCGCCGAAGGACAG : GTTCTGCATCAACAGCTGCATACAAAAGGTGGGAGAAGGCTGCAATTGCTGGAGTTTCATTGGTAGCTGATGCAGCAGAACATTTGGAACGAGCAACTATTGATAAAGATGTCGGACTGGTCCAGAATTCGCAGG : CTATAAATGGTTTTGAACATGTTGGCAAAAATGTGCATTCTTTGCCGACTTTATCCCAAAATCTGTTAAACGAGACTAATTTACAGAGTTGTATGAAACTCAAGCTCCAGCTGTTTCCTGTTGATGAAGGAACTAGAAGATCCCTGGAAATG : GATAATCATAACCCTTACTTGGAGCTCACTCTAAGTAATCGAAAAAAGATGTCATCCGTTTTGGAGCATCTCAATCGTAAATGGGGAAGTTCGAGCATAGCAACTGGAGAACTGGTGCTTTTTCCTTACCATGTACAGATGGAAAACCTGGTGCAATCCCTGAGATGGACCAAAGATACCACACAGAGTGCGGCTGATGTGCATAATCTGATCGGAAGCCCTCCAGTTTTTCGTCTCAG : ATATGGTTGGTTTCCAAATGCTGAGCTTGGAACACCTCTTGAACTATTGTCATCTGCCATTCCGTTTATGCAAAATATTAACCCTAACATCACAAATGAAAATAATGCGGAAATACTAGCATCATCCCCTGGTAAACTTGTACGATTTTCTAAAGAACCACTAGCTTCTAACCCAAGAATGACTGTGACATCCTCCTCAATCAAGCTGTCTGGTGAGTCAAACTTGCAAGCAAGCATGGGTCTAAATACCTACACTTATGATCATGATGGAACTCTGCCATTGAATAGAAGGGAGAATGGGGATGCAACCACAGCAGAACAAGCTGAGATG : CATGATATGCAGGGAAGCAAGGCCAGTGCTTTGTCGGCAGGGGATTGGGAAGATAGCCTTACCAACATAAGTGTCGGAGATCTTCTCTTTGATGCACCTGATGATGAGGAAACAGACTGTATTGACTCAGCTTTGTGCGGAAGCTCTCATTTTCTCTCACAGATGCCATTAAGCTGTGACTCGTTTGATGCAGCGATTGCTGCTCATATATATAAACATCAAAGCAAAGCTGATTCTCAGATGGCTCTTCCACCTCAAGCATCTTCCATTTGGAATGCTGAAGATACATGTGATGCTTTTGCATTCAAGAAAAATGTTGCTTTCAGTGACAAATCGCAGTGTTCATCCAGCAATGTTGGTGCAGAGAATTCCCAGCGGATTGCTCAGTCATCTTCCCTGGTATTGGATGCAGTAATCAAG : GATTTGCCTGGGAACATGGAGTCCTTTAACGGTGAACCTGCTCATGATGACGCAGTGGATGAGTGTCAATCGGATGCACAGGCGTTGGATGGTTCTTCAAAGGATCTTAATGGGCTCTCTGGCATATATTGG : ACAGACTCTTTAGGACCGCTAGAACTGGACGCCCCTTCATGTAGATATCATAGTGAAGACATAACTCTGAGTGATAGTCTTGGTGGTTTTAACCGCCTCATAGTTAACAGTCTAGATGCATTCCAAAATTGCTCGTTCTTTGGGTTGGACAAAACAGAGCCTGGATCTACTGTTGAACCTGTAAAGACTTCAGATTTGAAGATCGGCGCTGAAGTCTAAGCTTCTCGACTAAAAAACTTAGTTCGGCTAACTTTATAGGTATGTCTCAACAATCTCAAGTCCAGAATTTCGTGCATGTGTGCAACGCGCAAGTATGCATAGCACTTTAAAAGAGAAAAAAAGGTTGAAATGGGACAAAGGTTCCCTCTCTAATGTACAAAATATAACTCTTGAGAGTACTTCAGGTGTCTCTGAATGTGTGT</gDNA_template>
            <first_frame> L  H  G  H  V  R  R  K  K  A  F  S  L  H  C  D  K  L  G  R :   I  L  R  K  L  L  V  A  C  R  A  K  T  R  I  R :   S  D  I  I  I  I  V  *  *  G  V  *  T  S  C  W  V  Q  N  F  V  L  M  P  K  I  P  R  I  L  M  L  Q  C  C  D   : G  G  L  Y  W  K  N  I  A  V  K  P  Q  S  F  I  *  N  H  G  G  L  K  Y  L  L  K  L  W :   R  V  S  C  *  K  T  G  K  R  M  *  E  G  V  L  L  K  E  K  V  V  L  Q  L  L  D  L  L  Q  V  M  A  E  C  Q  L  M  I  V  G  Q  L  K  W  F  F  L  T  T  R  M  Y  R  N  L  D  L  E  K  A  L  L  *  N  A  M  S  W  V  S  I  E  A  M  Q  K  *  T  L  L  *  K  M  L  D  I  A  E  G  Q  :  V  L  H  Q  Q  L  H  T  K  G  G  R  R  L  Q  L  L  E  F  H  W  *  L  M  Q  Q  N  I  W  N  E  Q  L  L  I  K  M  S  D  W  S  R  I  R  R  :  L  *  M  V  L  N  M  L  A  K  M  C  I  L  C  R  L  Y  P  K  I  C  *  T  R  L  I  Y  R  V  V  *  N  S  S  S  S  C  F  L  L  M  K  E  L  E  D  P  W  K  W :   I  I  I  T  L  T  W  S  S  L  *  V  I  E  K  R  C  H  P  F  W  S  I  S  I  V  N  G  E  V  R  A  *  Q  L  E  N  W  C  F  F  L  T  M  Y  R  W  K  T  W  C  N  P  *  D  G  P  K  I  P  H  R  V  R  L  M  C  I  I  *  S  E  A  L  Q  F  F  V  S   : D  M  V  G  F  Q  M  L  S  L  E  H  L  L  N  Y  C  H  L  P  F  R  L  C  K  I  L  T  L  T  S  Q  M  K  I  M  R  K  Y  *  H  H  P  L  V  N  L  Y  D  F  L  K  N  H  *  L  L  T  Q  E  *  L  *  H  P  P  Q  S  S  C  L  V  S  Q  T  C  K  Q  A  W  V  *  I  P  T  L  M  I  M  M  E  L  C  H  *  I  E  G  R  M  G  M  Q  P  Q  Q  N  K  L  R  C :   M  I  C  R  E  A  R  P  V  L  C  R  Q  G  I  G  K  I  A  L  P  T  *  V  S  E  I  F  S  L  M  H  L  M  M  R  K  Q  T  V  L  T  Q  L  C  A  E  A  L  I  F  S  H  R  C  H  *  A  V  T  R  L  M  Q  R  L  L  L  I  Y  I  N  I  K  A  K  L  I  L  R  W  L  F  H  L  K  H  L  P  F  G  M  L  K  I  H  V  M  L  L  H  S  R  K  M  L  L  S  V  T  N  R  S  V  H  P  A  M  L  V  Q  R  I  P  S  G  L  L  S  H  L  P  W  Y  W  M  Q  *  S  R :   I  C  L  G  T  W  S  P  L  T  V  N  L  L  M  M  T  Q  W  M  S  V  N  R  M  H  R  R  W  M  V  L  Q  R  I  L  M  G  S  L  A  Y  I  G :   Q  T  L  *  D  R  *  N  W  T  P  L  H  V  D  I  I  V  K  T  *  L  *  V  I  V  L  V  V  L  T  A  S  *  L  T  V  *  M  H  S  K  I  A  R  S  L  G  W  T  K  Q  S  L  D  L  L  L  N  L  *  R  L  Q  I  *  R  S  A  L  K  S  K  L  L  D  *  K  T  *  F  G  *  L  Y  R  Y  V  S  T  I  S  S  P  E  F  R  A  C  V  Q  R  A  S  M  H  S  T  L  K  E  K  K  R  L  K  W  D  K  G  S  L  S  N  V  Q  N  I  T  L  E  S  T  S  G  V  S  E  C  V  </first_frame>
            <second_frame>  C  M  D  T  S  G  G  R  K  L  F  L  C  T  A  T  S  W  E   : E  F  *  E  N  Y  *  S  R  A  E  Q  K  Q  G  S   : G  Q  T  L  L  L  S  S  S  E  A  Y  E  Q  V  V  G  S  R  T  L  S  *  C  Q  K  F  Q  G  Y  *  C  C  N  V  A  M  :  V  V  F  T  G  K  I  *  L  *  S  L  K  A  S  F  E  T  T  E  V  *  N  I  Y  *  N  F   : G  E  S  A  V  E  R  P  E  K  E  C  K  K  A  S  F  S  R  R  K  *  F  Y  S  C  W  I  S  F  K  S  W  Q  S  V  N  *  *  *  S  D  S  *  S  G  S  S  *  Q  P  G  C  T  E  I  W  I  W  K  R  L  F  Y  K  T  P  C  H  G  C  Q  *  K  Q  C  K  S  R  L  F  C  E  K  C  *  T  S  P  K  D  R :   F  C  I  N  S  C  I  Q  K  V  G  E  G  C  N  C  W  S  F  I  G  S  *  C  S  R  T  F  G  T  S  N  Y  *  *  R  C  R  T  G  P  E  F  A  G :   Y  K  W  F  *  T  C  W  Q  K  C  A  F  F  A  D  F  I  P  K  S  V  K  R  D  *  F  T  E  L  Y  E  T  Q  A  P  A  V  S  C  *  *  R  N  *  K  I  P  G  N   : G  *  S  *  P  L  L  G  A  H  S  K  *  S  K  K  D  V  I  R  F  G  A  S  Q  S  *  M  G  K  F  E  H  S  N  W  R  T  G  A  F  S  L  P  C  T  D  G  K  P  G  A  I  P  E  M  D  Q  R  Y  H  T  E  C  G  *  C  A  *  S  D  R  K  P  S  S  F  S  S  Q  :  I  W  L  V  S  K  C  *  A  W  N  T  S  *  T  I  V  I  C  H  S  V  Y  A  K  Y  *  P  *  H  H  K  *  K  *  C  G  N  T  S  I  I  P  W  *  T  C  T  I  F  *  R  T  T  S  F  *  P  K  N  D  C  D  I  L  L  N  Q  A  V  W  *  V  K  L  A  S  K  H  G  S  K  Y  L  H  L  *  S  *  W  N  S  A  I  E  *  K  G  E  W  G  C  N  H  S  R  T  S  *  D   : A  *  Y  A  G  K  Q  G  Q  C  F  V  G  R  G  L  G  R  *  P  Y  Q  H  K  C  R  R  S  S  L  *  C  T  *  *  *  G  N  R  L  Y  *  L  S  F  V  R  K  L  S  F  S  L  T  D  A  I  K  L  *  L  V  *  C  S  D  C  C  S  Y  I  *  T  S  K  Q  S  *  F  S  D  G  S  S  T  S  S  I  F  H  L  E  C  *  R  Y  M  *  C  F  C  I  Q  E  K  C  C  F  Q  *  Q  I  A  V  F  I  Q  Q  C  W  C  R  E  F  P  A  D  C  S  V  I  F  P  G  I  G  C  S  N  Q   : G  F  A  W  E  H  G  V  L  *  R  *  T  C  S  *  *  R  S  G  *  V  S  I  G  C  T  G  V  G  W  F  F  K  G  S  *  W  A  L  W  H  I  L   : D  R  L  F  R  T  A  R  T  G  R  P  F  M  *  I  S  *  *  R  H  N  S  E  *  *  S  W  W  F  *  P  P  H  S  *  Q  S  R  C  I  P  K  L  L  V  L  W  V  G  Q  N  R  A  W  I  Y  C  *  T  C  K  D  F  R  F  E  D  R  R  *  S  L  S  F  S  T  K  K  L  S  S  A  N  F  I  G  M  S  Q  Q  S  Q  V  Q  N  F  V  H  V  C  N  A  Q  V  C  I  A  L  *  K  R  K  K  G  *  N  G  T  K  V  P  S  L  M  Y  K  I  *  L  L  R  V  L  Q  V  S  L  N  V  C </second_frame>
            <third_frame>   A  W  T  R  Q  E  E  E  S  F  F  S  A  L  R  Q  V  G  K  :  N  F  E  K  I  T  S  R  V  Q  S  K  N  K  D  Q  :  V  R  H  Y  Y  Y  R  L  V  R  R  M  N  K  L  L  G  P  E  L  C  L  D  A  K  N  S  K  D  T  N  A  A  M  L  R  W :   W  S  L  L  E  K  Y  S  C  K  A  S  K  L  H  L  K  P  R  R  F  K  I  F  I  E  T  L  :  E  S  Q  L  L  K  D  R  K  K  N  V  R  R  R  P  S  Q  G  E  S  S  S  T  A  A  G  S  P  S  S  H  G  R  V  S  T  N  D  S  R  T  V  K  V  V  L  L  D  N  Q  D  V  Q  K  F  G  S  G  K  G  S  S  I  K  R  H  V  M  G  V  N  R  S  N  A  K  V  D  S  S  V  K  N  A  R  H  R  R  R  T   : G  S  A  S  T  A  A  Y  K  R  W  E  K  A  A  I  A  G  V  S  L  V  A  D  A  A  E  H  L  E  R  A  T  I  D  K  D  V  G  L  V  Q  N  S  Q   : A  I  N  G  F  E  H  V  G  K  N  V  H  S  L  P  T  L  S  Q  N  L  L  N  E  T  N  L  Q  S  C  M  K  L  K  L  Q  L  F  P  V  D  E  G  T  R  R  S  L  E  M  :  D  N  H  N  P  Y  L  E  L  T  L  S  N  R  K  K  M  S  S  V  L  E  H  L  N  R  K  W  G  S  S  S  I  A  T  G  E  L  V  L  F  P  Y  H  V  Q  M  E  N  L  V  Q  S  L  R  W  T  K  D  T  T  Q  S  A  A  D  V  H  N  L  I  G  S  P  P  V  F  R  L  R :   Y  G  W  F  P  N  A  E  L  G  T  P  L  E  L  L  S  S  A  I  P  F  M  Q  N  I  N  P  N  I  T  N  E  N  N  A  E  I  L  A  S  S  P  G  K  L  V  R  F  S  K  E  P  L  A  S  N  P  R  M  T  V  T  S  S  S  I  K  L  S  G  E  S  N  L  Q  A  S  M  G  L  N  T  Y  T  Y  D  H  D  G  T  L  P  L  N  R  R  E  N  G  D  A  T  T  A  E  Q  A  E  M  :  H  D  M  Q  G  S  K  A  S  A  L  S  A  G  D  W  E  D  S  L  T  N  I  S  V  G  D  L  L  F  D  A  P  D  D  E  E  T  D  C  I  D  S  A  L  C  G  S  S  H  F  L  S  Q  M  P  L  S  C  D  S  F  D  A  A  I  A  A  H  I  Y  K  H  Q  S  K  A  D  S  Q  M  A  L  P  P  Q  A  S  S  I  W  N  A  E  D  T  C  D  A  F  A  F  K  K  N  V  A  F  S  D  K  S  Q  C  S  S  S  N  V  G  A  E  N  S  Q  R  I  A  Q  S  S  S  L  V  L  D  A  V  I  K  :  D  L  P  G  N  M  E  S  F  N  G  E  P  A  H  D  D  A  V  D  E  C  Q  S  D  A  Q  A  L  D  G  S  S  K  D  L  N  G  L  S  G  I  Y  W  :  T  D  S  L  G  P  L  E  L  D  A  P  S  C  R  Y  H  S  E  D  I  T  L  S  D  S  L  G  G  F  N  R  L  I  V  N  S  L  D  A  F  Q  N  C  S  F  F  G  L  D  K  T  E  P  G  S  T  V  E  P  V  K  T  S  D  L  K  I  G  A  E  V  *  A  S  R  L  K  N  L  V  R  L  T  L  *  V  C  L  N  N  L  K  S  R  I  S  C  M  C  A  T  R  K  Y  A  *  H  F  K  R  E  K  K  V  E  M  G  Q  R  F  P  L  *  C  T  K  Y  N  S  *  E  Y  F  R  C  L  *  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0116C14.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105451" stop="105395"/>
                    <exon start="105285" stop="105238"/>
                    <exon start="105119" stop="105010"/>
                    <exon start="104544" stop="104460"/>
                    <exon start="104357" stop="104084"/>
                    <exon start="103521" stop="103387"/>
                    <exon start="103288" stop="103137"/>
                    <exon start="103038" stop="102800"/>
                    <exon start="102714" stop="102384"/>
                    <exon start="101169" stop="100750"/>
                    <exon start="100675" stop="100544"/>
                    <exon start="100425" stop="100207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2199</number_coding_nucleotides>
                  <number_encoded_amino_acids>733</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWTRQEEESFFSALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPELCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFIETLESQLLKDRKKNVRRRPSQGESSSTAAGSPSSHGRVSTNDSRTVKVVLLDNQDVQKFGSGKGSSIKRHVMGVNRSNAKVDSSVKNARHRRRTGSASTAAYKRWEKAAIAGVSLVADAAEHLERATIDKDVGLVQNSQAINGFEHVGKNVHSLPTLSQNLLNETNLQSCMKLKLQLFPVDEGTRRSLEMDNHNPYLELTLSNRKKMSSVLEHLNRKWGSSSIATGELVLFPYHVQMENLVQSLRWTKDTTQSAADVHNLIGSPPVFRLRYGWFPNAELGTPLELLSSAIPFMQNINPNITNENNAEILASSPGKLVRFSKEPLASNPRMTVTSSSIKLSGESNLQASMGLNTYTYDHDGTLPLNRRENGDATTAEQAEMHDMQGSKASALSAGDWEDSLTNISVGDLLFDAPDDEETDCIDSALCGSSHFLSQMPLSCDSFDAAIAAHIYKHQSKADSQMALPPQASSIWNAEDTCDAFAFKKNVAFSDKSQCSSSNVGAENSQRIAQSSSLVLDAVIKDLPGNMESFNGEPAHDDAVDECQSDAQALDGSSKDLNGLSGIYWTDSLGPLELDAPSCRYHSEDITLSDSLGGFNRLIVNSLDAFQNCSFFGLDKTEPGSTVEPVKTSDLKIGAEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 130 chains have been computed
$ 
$ memory statistics:
$ 226808 bytes spliced alignments in total
$ 63 spliced alignments have been stored
$ 3600 bytes was the average size of a spliced alignment
$ 26392 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1649 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 140 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:33:48
-->
