<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:56:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221336" ref_strand="+" ref_description="SGN-E221336 [cLEL-22-A16](-)">
      <seq>tcaaatctggaaattggtcttctccaaaacttccatgaatttgtcgtggagttgcaagtccattttgagttcctactgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcatttgatataagttcattttgtccatgtaaagagcagagtgttaggggacctgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttgaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="1" stop="643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12" g_stop="342" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="357"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E221336" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12" e_stop="342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAA</genome_strand>
        <mrna_strand>TCAAATCTGGAAATTGGTCTTCTCCAAAACTTCCATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTACTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTTGATATAAGTTCATTTTGTCCATGTAAAGAGCAGAGTGTTAGGGGACCTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353254" ref_strand="+" ref_description="SGN-E353254 [cTOS-14-F22]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttgcataaatggaatcctccccttttccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3236" stop="1699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2936" g_stop="2869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="1995" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="614" r_length="384" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E353254" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2936" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="1995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCT-CCCTTTTCCAAAGTAG</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCCTTTTCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333615" ref_strand="-" ref_description="SGN-E333615 [cTOD-22-F3]">
      <seq>agtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2928" stop="1726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2628" g_stop="2481" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2026" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="500" r_length="352" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E333615" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2628" e_stop="2481"/>
          <exon e_start="2391" e_stop="2026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</genome_strand>
        <mrna_strand>AGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349512" ref_strand="+" ref_description="SGN-E349512 [cTOS-1-O7]">
      <seq>tccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2883" stop="1726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2583" g_stop="2481" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2026" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="455" r_length="352" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E349512" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2583" e_stop="2481"/>
          <exon e_start="2391" e_stop="2026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</genome_strand>
        <mrna_strand>TCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333619" ref_strand="+" ref_description="SGN-E333619 [cTOD-22-H3]">
      <seq>caaacatggcaatggtttatgccaaactctaaaaccagtaatgatggttttagccttcaaagtaagaacattttacttgaaaagataataaactaccatccatttaaaaagaggtcatctgtcatcctgatcctttttttctcactttctttttattcaacgcataattaggaaggggaaaggtaaataatgtatgagaaatatcacgaaaacataaagagcctacagacttcattcaaactaacatatccaggacaacacggaggcagtccccgtcatgcatcatgtcgaaagctttgttaatgaccacaagagtcatggtatgagtgatgtattcatccaccttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="1726" stop="2691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2026" g_stop="2391" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E333619" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2026" e_stop="2391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGTTCATCTGTCATCTTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACACATAATTAGCAAGGGGAAAGGTAAATAGTCTCTGAGAAATAGCACAAAAACAGAAAGTAAGCAACATAAAGAGCCTACAGACTTCATTCATACAAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCAGGTCGAAAGCTTTGTTTATGTCCGCAAGTGTCATGTTATGAGTGATGTATTCATCCACCTTGATTTC</genome_strand>
        <mrna_strand>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGGTCATCTGTCATCCTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACGCATAATTAGGAAGGGGAAAGGTAAATAATGTATGAGAAATA--TC----AC-----G-AA--AACATAAAGAGCCTACAGACTTCATTCAAACTAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCATGTCGAAAGCTTTGTTAATGACCACAAGAGTCATGGTATGAGTGATGTATTCATCCACCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411753" ref_strand="-" ref_description="SGN-E411753 [STM-15-O9]">
      <seq>cagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcatagcatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacgaagtctggaggcactttatgttgctgactttctgtttttgtgctatttatcggacactatttccctttccccttccccttcctaattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggatgctattttattatcttttcaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2929" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2629" g_stop="2481" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2090" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="459" r_length="310" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E411753" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411753" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2629" e_stop="2481"/>
          <exon e_start="2391" e_stop="2090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTT----G--CTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCT</genome_strand>
        <mrna_strand>CAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAGCATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACGAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTATCGGACACTATTTCCCTTTCCCCTTCCCCTTCCTAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGGATGCTATTTTATTATCTTTTCAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717313" ref_strand="+" ref_description="SGN-E717313 [FB19DD04]">
      <seq>gttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaatgaagtctgtaggctctttatgttgcttactttctgtttttgtgctatttctcagagactatttacctttccccttgctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4632" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4426" g_stop="4415" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="88" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="246" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="408" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2391" g_stop="2093" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="707" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E717313" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4426" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>GTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351096" ref_strand="+" ref_description="SGN-E351096 [cTOS-6-N17]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3236" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2936" g_stop="2869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2093" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E351096" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2936" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352405" ref_strand="+" ref_description="SGN-E352405 [cTOS-9-N23]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3236" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2936" g_stop="2869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2093" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E352405" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2936" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355315" ref_strand="+" ref_description="SGN-E355315 [cTOS-18-C16]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3236" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2936" g_stop="2869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2093" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E355315" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2936" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356224" ref_strand="+" ref_description="SGN-E356224 [cTOS-20-N19]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3236" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2936" g_stop="2869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2093" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E356224" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2936" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586513" ref_strand="-" ref_description="SGN-E586513 [60570]">
      <seq>gggccccccccaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttcccttgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcatagcatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacgaagtctggaggcactttatgttgctgactttctgtttttgtgctatttctcggacactatttccctttccccttcataattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggggatgctattttattatcttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2944" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="176" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2095" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="477" r_length="301" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E586513" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586513" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAAT--GGATGGTAGTTTATTATCTTTTCAAGTAAAAT</genome_strand>
        <mrna_strand>GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTTGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAGCATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACGAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTCTCGGACACTATTTCCCTTTCCCCTTCATAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGGGGATGCTATTTTATTATCTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746080" ref_strand="+" ref_description="SGN-E746080 [GI|47105322]">
      <seq>ggggatctatttgtagagtcatcctcaaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaatgaagtctgtaggctctttatgttgcttactttctgtttttgtgctatttctcagagactatttacctttccccttgctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattaacttttcaagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6863" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6565" g_stop="6462" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="241" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="288" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="697" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="773" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="931" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="932" r_stop="1093" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="2391" g_stop="2097" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1388" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1389" polyA_stop="1403"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E746080" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1388</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6565" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GGGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTAACTTTTCAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619355" ref_strand="-" ref_description="SGN-E619355 [70043]">
      <seq>ggtgtggaacacctgcaaaaagtgaaccagggttccattgtgcgcatcttggcgctgggaacagttggtcttgctgtgcaggagggtgcaaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaattttggtgtgactgaattcatcaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttacagacggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgagggctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacgaagtctggaggcactttatgttgctgactttctgtttttgtgctatttatcggacactatttccctttccccttccccttcctaattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggatgctattttattatcttttcaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4786" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4487" g_stop="4415" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.795"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="152" r_length="77" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="310" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="472" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2391" g_stop="2097" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="775" r_length="303" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="785"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E619355" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619355" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4487" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGAACA-CTGCAAAAGTTGAACCA-GGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGC-AAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACC--T----TTCCCCTTGCTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GGTGTGGAACACCTGCAAAAAGTGAACCAGGGTTCCATTGTGCGCATCTTGGCGCTGGGAACAGTTGGTCTTGCT..................................................................................GTGCAGGAGGGTGCAAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATCAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGACGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACGAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTATCGGACACTATTTCCCTTTCCCCTTCCCCTTCCTAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGGATGCTATTTTATTATCTTTTCAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437814" ref_strand="-" ref_description="SGN-E437814 [cSTA-5-K5]">
      <seq>gaattcatcaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttacagacggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgagggctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacgaagtctggaggcactttatgttgctgactttctgtttttgtgctatttatcggacactatttccctttccccttccccttcctaattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggatgctattttattatcttttcaactaaaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3306" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3006" g_stop="2869" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2097" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="603" r_length="303" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="621"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E437814" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3006" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACC--T----TTCCCCTTGCTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GAATTCATCAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGACGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACGAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTATCGGACACTATTTCCCTTTCCCCTTCCCCTTCCTAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGGATGCTATTTTATTATCTTTTCAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350303" ref_strand="+" ref_description="SGN-E350303 [cTOS-5-A11]">
      <seq>tgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2869" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2569" g_stop="2481" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2097" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="370" r_length="281" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="380"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E350303" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2569" e_stop="2481"/>
          <exon e_start="2391" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>TGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221932" ref_strand="+" ref_description="SGN-E221932 [cLEL-10-G6](-)">
      <seq>gcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcgggcataaacaaagctttcgacctgatgcatggcggggactgcctccgtgatgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatgcatggtagtttattatcttttcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2843" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2543" g_stop="2481" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2097" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="344" r_length="281" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="358"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E221932" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2543" e_stop="2481"/>
          <exon e_start="2391" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGGCATAAACAAAGCTTTCGACCTGATGCATGGCGGGGACTGCCTCCGTGATGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGCATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221527" ref_strand="+" ref_description="SGN-E221527 [cLEL-10-G6](-)">
      <seq>ggggactgcccccgtgttgtcctggatatgtttgtttgaataaagtctgtaggctctttatgtttttgtgctatttctcaaacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaagaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2613" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2313" g_stop="2097" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="217"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E221527" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2313" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GGGGACTGCCCCCGTGTTGTCCTGGATATGTTTGTTTGAATAAAGTCTGTAGGCTC------T---TTA-----TGTTTTTGTGCTATTTCTCAAACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAGAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232485" ref_strand="+" ref_description="SGN-E232485 [cLEL-5-O23](-)">
      <seq>aagctttcgacctgatgcatgtcggggactgcctccgtgttgtcctggatatgtttgtatgaatgaagtctgtaggctctttatgttgcttactttctgtttttgtgctatttctcagagactatttacctttccccttgctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaacacttttaaaatggacggtagtttattatcttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2636" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2336" g_stop="2102" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="236" polyA_stop="252"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E232485" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2336" e_stop="2102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAA</genome_strand>
        <mrna_strand>AAGCTTTCGACCTGATGCATGTCGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACACTTTTAAAATGGACGGTAGTTTATTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219563" ref_strand="+" ref_description="SGN-E219563 [cLEL-11-I23](-)">
      <seq>gtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatccagatgacagatgaactctttttnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2927" stop="1828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2627" g_stop="2481" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2122" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="403" r_length="256" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="413"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E219563" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2627" e_stop="2481"/>
          <exon e_start="2391" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>GTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCCAGATGACAGATGAACTCTTTTTNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239074" ref_strand="+" ref_description="SGN-E239074 [cLEL-9-K11](-)">
      <seq>tgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtgggcaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatggcggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactaatttccctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttatataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2922" stop="1811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2622" g_stop="2481" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2122" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="399" r_length="257" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="429"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E239074" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2622" e_stop="2481"/>
          <exon e_start="2391" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACT-ATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>TGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGGCAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGGCGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTAATTTCCCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219141" ref_strand="+" ref_description="SGN-E219141 [cLEL-11-I23](-)">
      <seq>ggtgactggtcgtgtttggaagggaaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2871" stop="1828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2571" g_stop="2481" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2122" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="348" r_length="256" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="358"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E219141" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2571" e_stop="2481"/>
          <exon e_start="2391" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACTGGTCGTGTTTGGAAGGG-AACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>GGTGACTGGTCGTGTTTGGAAGGGAAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239282" ref_strand="+" ref_description="SGN-E239282 [cLEL-9-K11](-)">
      <seq>ctgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="2845" stop="1811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2545" g_stop="2481" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2391" g_stop="2122" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="321" r_length="256" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E239282" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2545" e_stop="2481"/>
          <exon e_start="2391" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>CTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579136" ref_strand="-" ref_description="SGN-E579136 [86261]">
      <seq>aaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaatttcggtgtgactgaattcatcaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgagggctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagaaatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttcccttgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcatagcatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacgaagtctggaggcactttatgttgctgactttctgtttttgtgctatttctcggacactatttccctttccccttcataattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggggatgctattttattaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4618" stop="1825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4318" g_stop="4257" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="220" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="382" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2391" g_stop="2125" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="651" r_length="269" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="687"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E579136" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579136" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4318" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGG</genome_strand>
        <mrna_strand>AAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTCGGTGTGACTGAATTCATCAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGAAATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTTGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAGCATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACGAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTCTCGGACACTATTTCCCTTTCCCCTTCATAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411816" ref_strand="-" ref_description="SGN-E411816 [STM-15-E16]">
      <seq>agggctgctttagagtgttgtcacaagggttgggggacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagctgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcatagcatgacacttgcggacataaacaaagcttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtatgaacaaagtctggaggcactttatgttgctgactttctgtttttgtgctatttctcggacacactatttccctttccccttcctaattgtatgtgtggaataaaaagaaagtaagaaaaaaaggatccatgggacggatgaactctttttaaatggggatgctattttattatcttttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="3195" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2895" g_stop="2869" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="189" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2391" g_stop="2125" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="460" r_length="271" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="506"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E411816" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411816" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2895" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTC--AGAGACTATTTACCTTTCCCCTTGCTAA-T-TATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGG</genome_strand>
        <mrna_strand>AGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGGACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCTGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAGCATGACACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAACAAAGTCTGGAGGCACTTTATGTTGCTGACTTTCTGTTTTTGTGCTATTTCTCGGACACACTATTTCCCTTTCCCCTTCCTAATTGTATGTGTGGAATAAAAAGAAAGTAAGAAAAAAAGGATCCATGGGACGGATGAACTCTTTTTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568438" ref_strand="+" ref_description="SGN-E568438 [12720]">
      <seq>cttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccaggagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacccggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaattttggtgtgactgaattcatcaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgagggctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagttttgacctgatgcatgacggggactgcctccgtgttgtcctggatatgttgtatgaaccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5650" stop="1968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5350" g_stop="5250" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="184" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="260" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="418" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="580" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2391" g_stop="2268" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="702" r_length="122" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E568438" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5350" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGT</genome_strand>
        <mrna_strand>CTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGGAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCCGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATCAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAG-TTTTGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATG-TTGTATGAACCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701617" ref_strand="+" ref_description="SGN-E701617 [FA16BH09]">
      <seq>atgctagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaaggaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcaacctgatgcatgacggggactggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5791" stop="2003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5491" g_stop="5250" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="325" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="401" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="559" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="721" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2391" g_stop="2307" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="806" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E701617" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5491" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACT</genome_strand>
        <mrna_strand>ATGCTAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAA.........................................................................................GGAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCAACCTGATGCATGACGGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580075" ref_strand="+" ref_description="SGN-E580075 [5318]">
      <seq>gtcttgctgtggcggagggtgcaaaagctgctgggtgcttcacggaattattggaattgatattgacagcaaaaagttcgatagagccaaaaatttcggtgtgactgaattcatcaatcccaagggagcatgagcaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctggttatgagggctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtaactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttcccttgtggacaagtattctacacagaaggaaatcaaggtggatgaatacatcactcatagcatgacaacttgcggacataaacaaagcttttgacctgatgcatgacggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4632" stop="2011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4422" g_stop="4415" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="86" r_length="78" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="246" r_length="160" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="411" r_length="165" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="0.85"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2391" g_stop="2311" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E580075" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4422" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGG-TGCTTCAC-GAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAA-GGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCT-GTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATT-TA-A-AGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGAC-ACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGG</genome_strand>
        <mrna_strand>GTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGGTGCTTCACGGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTCGGTGTGACTGAATTCATCAATCCCAAGGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGGTTATGAGGGCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTAACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTTGTGGACAAGTATTCTACACAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAGCATGACAACTTGCGGACATAAACAAAGCTTTTGACCTGATGCATGACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296029" ref_strand="+" ref_description="SGN-E296029 [cLET-27-F21]">
      <seq>atattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4583" stop="2013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4283" g_stop="4257" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="185" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="347" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2391" g_stop="2313" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="426" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E296029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4283" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACG</genome_strand>
        <mrna_strand>ATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241848" ref_strand="+" ref_description="SGN-E241848 [cLED-27-C12]">
      <seq>ttattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4595" stop="2014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4295" g_stop="4257" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="197" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2391" g_stop="2314" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="437" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E241848" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4295" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGAC</genome_strand>
        <mrna_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242207" ref_strand="+" ref_description="SGN-E242207 [cLED-37-C18]">
      <seq>ttattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgctatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggagactggtcgtgcttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcnacctgatgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4595" stop="2015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4295" g_stop="4257" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="197" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2391" g_stop="2315" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="436" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E242207" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4295" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGA</genome_strand>
        <mrna_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGCTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGAGACTGGTCGTGCTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCNACCTGATGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238557" ref_strand="+" ref_description="SGN-E238557 [cLED-17-F13]">
      <seq>ttattggaaatgatattgtcagcaaaaagtttgatagagccgggaattttggtgtgactgaattccccactcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgatgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4595" stop="2042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4295" g_stop="4257" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="197" r_length="158" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2391" g_stop="2342" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="409" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E238557" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4295" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACAT</genome_strand>
        <mrna_strand>TTATTGGAAATGATATTGTCAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGAATTTTGGTGTGACTGAATTCCCCACTCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGATGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706735" ref_strand="+" ref_description="SGN-E706735 [FA30DB05]">
      <seq>ggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5853" stop="2180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5553" g_stop="5250" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="387" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="463" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="621" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2642" g_stop="2481" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="783" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2391" g_stop="2378" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="797" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E706735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5553" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2481"/>
          <exon e_start="2391" e_stop="2378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGA</genome_strand>
        <mrna_strand>GGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213507" ref_strand="+" ref_description="SGN-E213507 [cLEC-71-A5]">
      <seq>tggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcangagatatctacacgtccatttcanctggtgactggtcgtgtttggaagggactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5734" stop="2242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5434" g_stop="5250" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="268" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="344" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="502" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2642" g_stop="2542" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="602" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E213507" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5434" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGC</genome_strand>
        <mrna_strand>TGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCANGAGATATCTACACGTCCATTTCANCTGGTGACTGGTCGTGTTTGGAAGGG-ACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236246" ref_strand="+" ref_description="SGN-E236246 [cLED-20-P3]">
      <seq>ttattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="4595" stop="2256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4295" g_stop="4257" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="197" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2642" g_stop="2556" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="284" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E236246" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4295" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTT</genome_strand>
        <mrna_strand>TTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697541" ref_strand="+" ref_description="SGN-E697541 [FA03BB11]">
      <seq>ccattaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggacactcagtgattgcaggtgttgctgcttctggtcaggaaatatctacacgtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5866" stop="2279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5571" g_stop="5250" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="405" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="639" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2642" g_stop="2579" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="703" r_length="64" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E697541" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5571" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCAT</genome_strand>
        <mrna_strand>CCATTAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGACACTCAGTGATTGCAGGTGTTGCTGCTTCTGGTCAGGAAATATCTACACGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701361" ref_strand="+" ref_description="SGN-E701361 [FA15DA09]">
      <seq>aggtacacatggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6793" stop="2299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="6462" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="169" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="216" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="542" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="625" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="701" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2869" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="859" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2642" g_stop="2599" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="903" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E701361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2869"/>
          <exon e_start="2642" e_stop="2599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCA</genome_strand>
        <mrna_strand>AGGTACACATGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737039" ref_strand="+" ref_description="SGN-E737039 [LC08BA12]">
      <seq>ggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcctactgatggtggtgttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6793" stop="2586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="6462" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="169" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="216" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="542" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="625" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="701" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2886" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="842" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E737039" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTT</genome_strand>
        <mrna_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCCTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709330" ref_strand="+" ref_description="SGN-E709330 [FA51BH03]">
      <seq>cggtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgaatgcataggaaatgtctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6811" stop="2600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6511" g_stop="6462" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="187" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="234" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="560" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="643" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="719" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2900" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="846" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E709330" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6511" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGT</genome_strand>
        <mrna_strand>CGGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAATGCATAGGAAATGTCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700003" ref_strand="+" ref_description="SGN-E700003 [FA11DD02]">
      <seq>acaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataggaaatgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6787" stop="2601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6487" g_stop="6462" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="163" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="210" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="536" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="619" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="695" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2901" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="821" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E700003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6487" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTG</genome_strand>
        <mrna_strand>ACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555513" ref_strand="+" ref_description="SGN-E555513 [cTSC-4-K13]">
      <seq>gtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggtggtgttgattacagttttgagtgcataagaaatgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6809" stop="2602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6509" g_stop="6462" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="185" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="232" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="558" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="641" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="717" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2902" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="842" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E555513" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6509" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCT</genome_strand>
        <mrna_strand>GTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAAGAAATGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240282" ref_strand="+" ref_description="SGN-E240282 [cLED-25-L4]">
      <seq>tgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgcataggaaatgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="5740" stop="2603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5440" g_stop="5250" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="274" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="350" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3026" g_stop="2903" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="474" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E240282" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5440" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTC</genome_strand>
        <mrna_strand>TGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261465" ref_strand="+" ref_description="SGN-E261465 [cLEG-57-L20]">
      <seq>ccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttnggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgngaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcattgtggatcttacagaatggtggtgttgattacagttttgagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6607" stop="2616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6307" g_stop="6189" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="166" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="493" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="576" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="652" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3026" g_stop="2916" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="764" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E261465" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6307" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTT-GGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTG-ATGGTGGTGTTGATTACAGTTTTGAGTGCA</genome_strand>
        <mrna_strand>CCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTNGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGNGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATTGTGGATCTTACAGAATGGTGGTGTTGATTACAGTTTTGAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448580" ref_strand="+" ref_description="SGN-E448580 [cSTS-3-J15]">
      <seq>ctctgccataccgatgcttatacctggagcggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaattttggtgtgactgaattcatcaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttacagatggtggtgttgattacagttttgagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6524" stop="2617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6224" g_stop="6189" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="83" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="409" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="492" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="568" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3026" g_stop="2917" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="678" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E448580" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6224" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGC</genome_strand>
        <mrna_strand>CTCTGCCATACCGATGCTTATACCTGGAGCGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATCAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACAGATGGTGGTGTTGATTACAGTTTTGAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705718" ref_strand="+" ref_description="SGN-E705718 [FA27DG11]">
      <seq>tgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggacaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcaccaagtcattgtggatcttactgatggtggtgttgattacagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6803" stop="2621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6503" g_stop="6462" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="179" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="226" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="550" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="633" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="709" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2921" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="815" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E705718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6503" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGA</genome_strand>
        <mrna_strand>TGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGG--ACACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCACCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699993" ref_strand="+" ref_description="SGN-E699993 [FA11DC03]">
      <seq>tgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6803" stop="2641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6503" g_stop="6462" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="179" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="226" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="552" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="635" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="711" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2941" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="797" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E699993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6503" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGT</genome_strand>
        <mrna_strand>TGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724602" ref_strand="+" ref_description="SGN-E724602 [FC24CD12]">
      <seq>gaaaaacactatttccatttactttgattctgtggtctgtaaatcatggctacacacggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtaaaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcaaagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcagcaagtcattgtggatcttactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6839" stop="2643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6540" g_stop="6462" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="216" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="263" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="589" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="672" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="748" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2943" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="832" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E724602" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6540" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATG</genome_strand>
        <mrna_strand>GAAAAACACTATTTCCATTTACTTTGATTCTGTGGTCTGTAAATCATGGCTACACACGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAAAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAAAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727099" ref_strand="+" ref_description="SGN-E727099 [LA13CH10]">
      <seq>attctgtggtctgtaaatcgtggctacacaaggtgaagtctgtcacctgcaaatctgcggtggcctgggaacccaacaggccctatggtgattgaggatgtgcatgtggctccaccgcaagccggtgaagtacggggtagagttttgtatactgctctctgacacaccgatgcttatacctggagtggcaatgatcctgagggtctcttcccatgtgttcttggtcatgatgctgcggggatactagaaagtgttggtgaggaagtgactgatgttcaaccaggagaccatgttataccttgctaccacgcagaatgcagagaatgcaagttctgcatgtcaggaaagaccgatctttgtggtaaagtaagggctgctactgaagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcaaaacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagcaacccattcaacaagtcattgtggatcttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6814" stop="2645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6514" g_stop="6462" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="192" r_length="138" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="239" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="565" r_length="326" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="648" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="724" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2945" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="806" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E727099" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6514" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTC-ATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCT-TGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGA</genome_strand>
        <mrna_strand>ATTCTGTGGTCTGTAAATCGTGGCTACACAAGGTGAAGTCTGTCACCTGCAAAT........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAGGCCCTATGGTGATTGAGGATGTGCATGTGGCTCCACCGCAAGCCGGTGAAGTACGGGGTAGAGTTTTGTATACTGCTCTCTGACACACCGATGCTTATACCTGGAGTGGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGATGCTGCGGG............................................................................................................................GATACTAGAAAGTGTTGGTGAGGAAGTGACTGATGTTCAACCAGGAGACCATGTTATACCTTGCTACCACGCAGAATGCAGAGAATGCAAGTTCTGCATGTCAGGAAAGACCGATCTTTGTGGTAAAGTAAGGGCTGCTACTGAAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAAAACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAACAAGTCATTGTGGATCTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262212" ref_strand="+" ref_description="SGN-E262212 [cLEG-56-A17]">
      <seq>tcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagcaagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6632" stop="2659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6476" g_stop="6462" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="152" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="199" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="525" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="608" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="684" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2959" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="752" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E262212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6476" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATT</genome_strand>
        <mrna_strand>TCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCAAGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340061" ref_strand="+" ref_description="SGN-E340061 [cTOF-3-F23]">
      <seq>taaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgngaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatcccaaggagcatgagaaacccattcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6801" stop="2666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6501" g_stop="6462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="177" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="224" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="550" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="633" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="709" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2966" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="770" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E340061" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6501" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCA</genome_strand>
        <mrna_strand>TAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGNGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGAAACCCATTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411815" ref_strand="+" ref_description="SGN-E411815 [STM-15-E16]">
      <seq>gtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagcggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaattttggtgtgactgaattcatcaatcccaaggagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6802" stop="2681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6502" g_stop="6462" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="178" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="225" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="551" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="634" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="710" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2981" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="756" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E411815" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6502" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGA</genome_strand>
        <mrna_strand>GTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGCGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATCAATCCCAAGGAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452418" ref_strand="+" ref_description="SGN-E452418 [cSTS-16-B20]">
      <seq>ttttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagcggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtgggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtgggcggaggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaaattttggtgtgactgaattcatcaatcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6823" stop="2690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6523" g_stop="6462" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="199" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="573" r_length="327" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="656" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="732" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2990" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="770" r_length="38" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E452418" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6523" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGT-GGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGT-GGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCC-AAAAATTTTGGTGTGACTGAATTCATTAATCCCAA</genome_strand>
        <mrna_strand>TTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGCGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGGCGGA-GGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAAATTTTGGTGTGACTGAATTCATCAATCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346187" ref_strand="+" ref_description="SGN-E346187 [cTOF-23-C9]">
      <seq>tttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatngtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgtgactgaattcattaatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="2691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6518" g_stop="6462" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="194" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="241" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="568" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="651" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="727" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2991" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="763" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E346187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6518" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGAT-GTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCCA</genome_strand>
        <mrna_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATNGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451359" ref_strand="+" ref_description="SGN-E451359 [cSTS-12-B17]">
      <seq>ggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctttgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacccggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcgganggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagttcgatagagccaaaaattttggtgtgactgaattcatcaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6793" stop="2692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="6462" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="169" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="216" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="542" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="625" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="701" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2992" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="736" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E451359" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCCC</genome_strand>
        <mrna_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTTTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCCGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGANGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTCGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGTGACTGAATTCATCAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706578" ref_strand="+" ref_description="SGN-E706578 [FA30BD09]">
      <seq>aatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgatagagccaaaaattttggtgggactgaattcattaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6799" stop="2693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6499" g_stop="6462" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="175" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="222" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="548" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="631" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="707" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3026" g_stop="2993" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="741" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E706578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6499" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
          <exon e_start="3026" e_stop="2993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGGTACAGCTTTGTCCAATTTGTCTAAGATTGTGAACTATGAACTTTTAGGAATAGTAAAGTATATGATTAGGTTCCAATTATATTTTACATCAGATTTGTCAGAACTTGCTACTCCTAAGTCCTAAGATCAATTTCTTGGTAGACTTCAAATACTAGTTACTAATCTCTAATGTTCAATCAAAAGCTAAAGCCCCTAGGGCTTTGGTTCAATGGTAAGAGTGTCTCGTGATGTGTGATTAGGTGCATGTCATGAATTTGTACCCTGTTGCAAACAAAAGCCTTGTATTTAATTGGGGAAGGGTAGAAGGATGGGCCCGTTACCACCGAGTTTCAAATCATGGGCCAGTTGGTCCTCAGGGATTCTAGATTATTAAGTATATGTTTGTTAAAAGCAGATAAATGATTTCAAAGTTAGATGTATATCTGTAGGGTTTCTTGTAGATATATGTTTTGCATGTGCTTAGATGGTTTTTTCTACATCATCGCTATGTCATAGTGGTAGTATGTGTAGAGAACTTCCTTATGGAATGGAGTATGTAATGGTAATGGAAAAGAAAAAGAAGCCTAATAATAATTTGTTGTCTTCATGCCCTCATCCTTTCTACCAAATCAAATGCAACAGCCATTTATCCAACAAAGAATGAGACAGAGATCTCTTCTAAAAATGATGCTGAACATTGCCTTGCCCTTTAGGTCTTAAAACTTTGGTTTCAATCAGTCAACGCCTATAGGTGCATTTTCCCCTCTTCAGTTTTCTGTCGATTTCTCAAGCTCAAGCTATTATTTCCTGACCTCTTTCCAGCTAATTCCATATCATTTCAAGCTTTGAAATTTTGAAAGCAAGAGATGATATTTTTCGCCGAATCATTTTAAAACTTTCAGATTAGATGTCATGATTTAATCAGTCATATATCTTGATTATCATCTGTATATTTCTGTATGATAAGCAGTAGATTGCTCTTATGAAAGTCTAATGTATAAATATCTTGTTTGATCTCATGCTGATCATAGGAGGAAACAAGTTGTTAACAAAATAATTTTGAAGCTTATGTCAGATTGAAGTGGCGGTGAAAGTATGTCTGGTTAAGTTAATCAGACTTATTCAAGAAATAGCATTTGAAACAAACTTGAGCAGCACAACAGTTTTCATGCTCTAGTGTCCTTAATTATTCTGTTGTATGGCACATAAGTTGTCACATCATCTGATCCATATATCTAACTGTTATGCAGCCAAAAATTTTGGTGTGACTGAATTCATTAATCC</genome_strand>
        <mrna_strand>AATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAATTTTGGTGGGACTGAATTCATTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604667" ref_strand="+" ref_description="SGN-E604667 [74805]">
      <seq>cactattttattttctttgatccnctgtggtctggtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccttgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgaaggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctttggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttcgccatctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgaccagcacacagttcgatagagccaaaaatttcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6834" stop="3947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6534" g_stop="6462" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="212" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="259" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="585" r_length="326" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="669" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="746" r_length="77" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E604667" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6534" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTTTTATTTTCTTTGAT--TCTGTGGTCTG-TAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTT-GCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGA-CAGCAAAAAGTTTGATAGAG</genome_strand>
        <mrna_strand>CACTA-TTTTATTTTCTTTGATCCNCTGTGGTCTGGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCTTGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAAGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTTTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTCGCCATCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACCAGCACACAGTTCGATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709848" ref_strand="+" ref_description="SGN-E709848 [FA53BG06]">
      <seq>cgttttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaatagctgctggtgcttcaccaattattggaattgatattgacagcaaaaagtttgataaagccaaaaattttggtgtgactgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="3947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6521" g_stop="6462" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="197" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="244" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="570" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="653" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="729" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E709848" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6521" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG</genome_strand>
        <mrna_strand>CGTTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAATAGCTGCTGGTGCTTCACCAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601239" ref_strand="+" ref_description="SGN-E601239 [54271]">
      <seq>gctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacgaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctttgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacccggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattatcggaattgatattgacaggccaaaaggttcgatagagccaaaaattttcggtgtgactggaattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6792" stop="3944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6492" g_stop="6462" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="169" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="216" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="542" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="625" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4257" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="703" r_length="78" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E601239" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6492" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAAC-AAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACA-G-CAAAAAGTTTGATAGAG</genome_strand>
        <mrna_strand>GCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACGAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTTTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCCGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATCGGAATTGATATTGACAGGCCAAAAGGTTCGATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341855" ref_strand="+" ref_description="SGN-E341855 [cTOF-9-P21]">
      <seq>atcctcaaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgngaacagttggtcttgctgtggcgggaggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6845" stop="3961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6545" g_stop="6462" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="221" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="268" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="594" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="677" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="749" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E341855" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6545" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGAT</genome_strand>
        <mrna_strand>ATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGNGAACAGTTGGTCTTGCT..................................................................................GTGGCGGGAGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211838" ref_strand="+" ref_description="SGN-E211838 [cLEC-66-D22]">
      <seq>tttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgngaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="3961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6518" g_stop="6462" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="194" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="241" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="567" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="650" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="722" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E211838" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6518" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGAT</genome_strand>
        <mrna_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGNGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251534" ref_strand="+" ref_description="SGN-E251534 [cLEG-9-O3]">
      <seq>cgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaaagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6513" stop="3962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6213" g_stop="6189" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="72" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="398" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="481" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4262" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="552" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E251534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6213" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGA</genome_strand>
        <mrna_strand>CGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255157" ref_strand="+" ref_description="SGN-E255157 [cLEG-31-K19]">
      <seq>ccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6607" stop="3969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6307" g_stop="6189" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="166" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="492" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="575" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4269" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="639" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E255157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6307" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAA</genome_strand>
        <mrna_strand>CCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250710" ref_strand="+" ref_description="SGN-E250710 [cLEG-7-C12]">
      <seq>ctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaaactgctggtgcttcacgaattattggaattgatattgacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6791" stop="3972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6491" g_stop="6462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="167" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="214" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="540" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="623" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4272" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="684" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E250710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6491" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCA</genome_strand>
        <mrna_strand>CTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAACTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411752" ref_strand="+" ref_description="SGN-E411752 [STM-15-O9]">
      <seq>attttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacccggttccattgttgccgtctttggcctgngaacagttggtcttgctgtggcgggaggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6828" stop="3973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6529" g_stop="6462" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="205" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="252" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="578" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="661" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4273" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="721" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E411752" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6529" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGC</genome_strand>
        <mrna_strand>ATTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCCGGTTCCATTGTTGCCGTCTTTGGCCTGNGAACAGTTGGTCTTGCT..................................................................................GTGGCGGGAGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456404" ref_strand="+" ref_description="SGN-E456404 [cSTS-29-M16]">
      <seq>cacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacccggttccattgttgccgtctttgggcctggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6632" stop="3973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6472" g_stop="6462" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="148" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="195" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="521" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="604" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4273" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="664" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E456404" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6472" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGC</genome_strand>
        <mrna_strand>CACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCCGGTTCCATTGTTGCCGTCTTTGGGCCTGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319591" ref_strand="+" ref_description="SGN-E319591 [cTOB-15-J8]">
      <seq>gatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccactagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtgcaaaagctgctggtgcttcacgaattattggaattgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6512" stop="3978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6212" g_stop="6189" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="397" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="480" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4278" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="535" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E319591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6212" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTG</genome_strand>
        <mrna_strand>GATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCACTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710560" ref_strand="+" ref_description="SGN-E710560 [FA55DC01]">
      <seq>caataattgaagttagagagtcgtataaagaattggatctatttgtagagtcatcctcaaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgtcgccgcctttggcctgagaacagttggtcttgctgtggcggaaggtgcaaaagctgctggtgctttaccaattattggaattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6896" stop="3981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6597" g_stop="6462" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="273" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="320" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="646" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="729" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4281" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="781" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E710560" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6597" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATTGAAGTTAGAGAGTCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATA</genome_strand>
        <mrna_strand>CAATAATTGAAGTTAGAGAGTCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTCGCCGCCTTTGGCCTGAGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAAGGTGCAAAAGCTGCTGGTGCTTTACCAATTATTGGAATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568867" ref_strand="+" ref_description="SGN-E568867 [13217]">
      <seq>cacaagggtcaagtcatcacctgcaaagctgcggtggcctgggnaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcaggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccatctttgggcctgggaacagtggtcttgctgtggcggagggtgcaaaagctgctggtgcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6788" stop="4000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6488" g_stop="6462" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="166" r_length="138" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="214" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="540" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="623" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4300" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="656" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E568867" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6488" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAA-GGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGG-AACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGC-GGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTT-GGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCA</genome_strand>
        <mrna_strand>CACAAGGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGNAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCATCTTTGGGCCTGGGAACAG-TGGTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567453" ref_strand="+" ref_description="SGN-E567453 [11581]">
      <seq>tgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccatctttggcctggggacagttggtcttgctgtggcggacggtgcaaaagctgctggtgcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6588" stop="4000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6288" g_stop="6189" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="147" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="473" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="556" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4332" g_stop="4300" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="589" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E567453" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6288" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCA</genome_strand>
        <mrna_strand>TGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCATCTTTGGCCTGGGGACAGTTGGTCTTGCT..................................................................................GTGGCGGACGGTGCAAAAGCTGCTGGTGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698572" ref_strand="+" ref_description="SGN-E698572 [FA06DC07]">
      <seq>ccctctttcatcacaaggtcaagtcatcacctgcaaagctgcccccggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgacgttcagccaggagaccatgttataccttgctaccaggtagaatgcaaagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcactcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgtcccaactggccttggagctgcttggaacactgcaaaacttgaaccaggttccattgttgccgtctttggcctgggaacagttgctcttgctgtggcggagggtgcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6797" stop="4013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6487" g_stop="6462" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="38" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="176" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="223" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="549" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="632" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4313" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="652" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E698572" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6487" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGG-TGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTGCAAAAGC</genome_strand>
        <mrna_strand>ACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCCCCCGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGACGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGTAGAATGCAAAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCACTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTCCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGCTTGGAACACTGCAAAACTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGCTCTTGCT..................................................................................GTGGCGGAGGGTGCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276807" ref_strand="+" ref_description="SGN-E276807 [cLEN-14-E8]">
      <seq>ttctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttgccgtctttggcctgggaacagttggtcttgctgtggcggagggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6813" stop="4113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6513" g_stop="6462" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="189" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="236" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="562" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4415" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4332" g_stop="4320" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="658" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E276807" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6513" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4415"/>
          <exon e_start="4332" e_stop="4320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCTGTAAGTATCTAACAATTTGATTGTGTGTCAAATAATTAAGCTCCTTTAATATATGTATGCAATCTATCTATTTGTTTGTTAGGTGGCGGAGGGTG</genome_strand>
        <mrna_strand>TTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT..................................................................................GTGGCGGAGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709284" ref_strand="+" ref_description="SGN-E709284 [FA51BA08]">
      <seq>cggaatcgtataaagaattggatctatttgtagagtcatcctcaaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagcccgggttaaagatttgtatactgcatctcatgccacaccgatgcttatacctggtagtggcaaggatcctgatggtctcttcccatgtgttcttgagtcatgaggctgcggggataataaaaagtgttggtgaaggagtgactgacgttcacccaagacaccatgttataccttgctaccaggcagaatgcatagaatgcaagttctgcaaatcatgaaagaccaatctttgaggcaaagtaagggctgctactggagtggaagttatgatgaacgaccgtaacagtcgattttctatcaatggaaaaccgatctataatttcatgggaacttcaaccttcactcagtacactgatgtccatgatgttactgatgcaaagattgacccagtacctcctctggagaaagtctgccttcttgcatgtggtgttcaaactggccttggagctgtttggaacactgcaaaagttgaaccatgttccattgttgccgtctttggcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6880" stop="4132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6582" g_stop="6462" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="262" r_length="140" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.87"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="310" r_length="48" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="636" r_length="326" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4432" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="702" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E709284" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6582" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACAC-AAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGC-TCTC-TGCCACACCGATGCTTATACCTGG-AGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTG-GTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGG</genome_strand>
        <mrna_strand>CGGAATCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGCCCGGGTTAAAGATTTGTATACTGCATCTCATGCCACACCGATGCTTATACCTGGTAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGATGGTCTCTTCCCATGTGTTCTTGAGTCATGAGGCTGCGGG............................................................................................................................GATAATAAAAAGTGTTGGTGAAGGAGTGACTGACGTTCACCCAAGACACCATGTTATACCTTGCTACCAGGCAGAATGCATAGAATGCAAGTTCTGCAAATCATGAAAGACCAATCTTTGAGGCAAAGTAAGGGCTGCTACTGGAGTGGAAGTTATGATGAACGACCGTAACAGTCGATTTTCTATCAATGGAAAACCGATCTATAATTTCATGGGAACTTCAACCTTCACTCAGTACACTGATGTCCATGATGTTACTGATGCAAAGATTGACCCAGTACCTCCTCTGGAGAAAGTCTGCCTTCTTGCATGTGGTGTTCAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCATGTTCCATTGTTGCCGTCTTTGGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704620" ref_strand="+" ref_description="SGN-E704620 [FA24DB09]">
      <seq>caaaaacactatttttactttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggaggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccatgcacaatgcatagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaatggctgctactggagtgggagttatgatgaacgaccgtaagagtcaattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccattatctcctctggagaaagtctgccttcttggatctgctgttccaactggccttggagctgtttggaacactgcaaaagatgaaccagcttccattgttgccgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6840" stop="4139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6540" g_stop="6462" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="216" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="263" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="589" r_length="326" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4439" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="648" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E704620" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6540" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTT</genome_strand>
        <mrna_strand>CAAAAACACTATTTTTACTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGAGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCATGCACAATGCATAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAATGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCAATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCATTATCTCCTCTGGAGAAAGTCTGCCTTCTTGGATCTGCTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGATGAACCAGCTTCCATTGTTGCCGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211843" ref_strand="+" ref_description="SGN-E211843 [cLEC-66-F8]">
      <seq>tttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="4147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6518" g_stop="6462" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="194" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="241" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="567" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4447" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="618" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E211843" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6518" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTG</genome_strand>
        <mrna_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254839" ref_strand="+" ref_description="SGN-E254839 [cLEG-33-H15]">
      <seq>caagcctttggtgattgaggatgtgcaggtggctccaccgggtgccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttccattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6603" stop="4147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6303" g_stop="6189" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="162" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="488" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4447" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="539" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E254839" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6303" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTG</genome_strand>
        <mrna_strand>CAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGGGTGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557865" ref_strand="+" ref_description="SGN-E557865 [16731]">
      <seq>ctttaaagcactattttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcaggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgaccagcagctcctctggagaaagtctggcttctcgggtgtggtgttccaactgggcttggagctgtttggaacactgcaaagttgaaccacgttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6842" stop="4153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6542" g_stop="6462" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="217" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="265" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="590" r_length="325" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4453" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="634" r_length="44" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E557865" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6542" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGC-GGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCA</genome_strand>
        <mrna_strand>CTTTAAAGCACTAT-TTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGA-CCAGCAGCTCCTCTGGAGAAAGTCTGGCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGGAGCTGTTTGGAACACTGC-AAAGTTGAACCACGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319392" ref_strand="+" ref_description="SGN-E319392 [cTOB-15-K8]">
      <seq>gatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaaccaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6512" stop="4153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6212" g_stop="6189" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="397" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4453" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="442" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E319392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6212" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCA</genome_strand>
        <mrna_strand>GATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560161" ref_strand="+" ref_description="SGN-E560161 [19771]">
      <seq>gtcaagtcatcacctgcaaagctgcggtggcctgggaaccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6782" stop="4161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6482" g_stop="6462" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="157" r_length="136" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="204" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="530" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4461" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="567" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E560161" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6482" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACC</genome_strand>
        <mrna_strand>GTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAA-CCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313980" ref_strand="+" ref_description="SGN-E313980 [cTOA-19-M14]">
      <seq>ccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacactgcaaaagttgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6607" stop="4161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6307" g_stop="6189" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="166" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="492" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4497" g_stop="4461" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="529" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E313980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6307" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACC</genome_strand>
        <mrna_strand>CCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567194" ref_strand="+" ref_description="SGN-E567194 [11281]">
      <seq>ttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttggctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaaggattgacccagcagctcctctggagaaaggtctggcttctcgggtgtggtgttccaaactggccttggagctgtttggaacactggcaaagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6826" stop="4163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6526" g_stop="6462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="202" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="249" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="579" r_length="330" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.83"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4462" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="615" r_length="36" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E567194" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6526" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTT-GCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAA-GATTGACCCAGTAGCTCCTCTGGAGAAA-GTCTGCCTTCTTGGATGTGGTGTTCC-AACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAAC</genome_strand>
        <mrna_strand>TTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGGATTGACCCAGCAGCTCCTCTGGAGAAAGGTCTGGCTTCTCGGGTGTGGTGTTCCAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACTGGCAAAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454052" ref_strand="+" ref_description="SGN-E454052 [cSTS-22-A19]">
      <seq>gaggcttctttaaagcactattttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcaatcagtacactgttgtccatgatgttagtgttgcaaagattgacccagcagctcctctggagaaagtctgccttctcgggtgtgggtgtcccactggccttggagctgtttggaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6850" stop="4175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6550" g_stop="6462" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="224" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="271" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="597" r_length="326" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4475" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="620" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E454052" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6550" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACT</genome_strand>
        <mrna_strand>GAGGCTT-CTTTAAAGCACTATTTT-ATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAATCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGCAGCTCCTCTGGAGAAAGTCTGCCTTCTCGGGTGTGGGTGTCCCACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347216" ref_strand="+" ref_description="SGN-E347216 [cTOF-25-D21]">
      <seq>atggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6795" stop="4175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6495" g_stop="6462" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="171" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="218" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="544" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4475" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="567" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E347216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6495" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACACT</genome_strand>
        <mrna_strand>ATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265452" ref_strand="+" ref_description="SGN-E265452 [cLEI-9-N19]">
      <seq>tcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgttccaactggccttggagctgtttggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6632" stop="4176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6476" g_stop="6462" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="152" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="199" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5250" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="525" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4497" g_stop="4476" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="547" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E265452" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6476" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5250"/>
          <exon e_start="4497" e_stop="4476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTGGTAAATTGACTTTCAGACCTAATATGTGATTGAACTAAAATCTTGTGATTTTCTTCAGGCTAATTCATGAAACGTATTCTGTAGCATCTCTGATTTAGTGCTGTCCATTAACTCCTTTTCTAATCCATTATTTATCAATAATATAGGTGTAATAAACTGTTGTGTTGGTTCTCGAAGTACTTGCTTTCAATTTTCATGTGACTTCATCATCTTTTTATTAGTTGTTCTTTTTGATTTGTTAAATCTCTCAAATTTTGGTCAAAATTACTGCAACACCTGACACCTGTCAAAATTGAGAGCACTTCTGAGATAATATGATGTATGTAAAGGGAAGACAGGATTTTGAGAGAATATACCCCAAGATAAAAGCTAAAAGAGAGAAGTAAAAAAGGAAATTTAAAACCAAGTTATCGTATAAATGATTGATTGCGCAAGGATGGAAATATATTTGAGTATATTGTCTAGGGAGCATGTCATCATAGTAATTTGATCTTTATGAGTTTAGTAGATAGTGTCTTTTGGTTGGTTTATCCAGGTGTCCATCTTATTTATCATTTTGCATCACTTCATGCTGGTTTATTCCCCTAGATTAGAAGTTGAGGAAGAAATAAAACATAGAATGCCCATCTAACTATATCCCTTTTGTTTCCTTCCAAATCCAATACACTGTGTTTTCTTTAGTTTTAGATAATGCTAATTACATTCTTACTATACACTCCTTGCGTTTTACATTGTGTATTTGCTGTCTTTAGGCCTTGGAGCTGTTTGGAACAC</genome_strand>
        <mrna_strand>TCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGCTGTTTGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568718" ref_strand="+" ref_description="SGN-E568718 [13045]">
      <seq>ctgtagactcatcttctttaaagcactattttattttctttgattctgtggtctgtaaatcatggctacacaagggtcaagtcatcacctgcaaagctgcggtggcctgggnaacccaacaagcctttggtgattgaggatgtgcaggtgtgccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctttgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcaggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcacaagattgacccagcagctcctctgggagaaagtctgcttctcagggtgtggtgtccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6847" stop="4970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6555" g_stop="6462" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="235" r_length="139" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="283" r_length="48" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5252" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="608" r_length="325" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E568718" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6555" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGAGTCATCCTC-AAAAA-CACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAA-GGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGG-AACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTG-GCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGC-GGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCA-AAGATTGACCCAGTAGCTCCTCT-GGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAAC</genome_strand>
        <mrna_strand>CTGTAGACTCATCTTCTTTAAAGCACTATTT-TATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGNAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGTGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTTTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCACAAGATTGACCCAGCAGCTCCTCTGGGAGAAAGTCTGCTTCTCAGGGTGTGGTG-TCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266726" ref_strand="+" ref_description="SGN-E266726 [cLEI-5-P4]">
      <seq>tctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcaaccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgtggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6812" stop="4957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6512" g_stop="6462" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="188" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="235" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5257" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="554" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E266726" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6512" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTT</genome_strand>
        <mrna_strand>TCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAACCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237715" ref_strand="+" ref_description="SGN-E237715 [cLED-19-P17]">
      <seq>ttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtataaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaagattgacccagtagctcctctggagaaagtctgccttcttggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6538" stop="4963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6238" g_stop="6189" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="97" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5263" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="410" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E237715" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6238" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGT</genome_strand>
        <mrna_strand>TTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTATAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356089" ref_strand="+" ref_description="SGN-E356089 [cLHT-7-C9]">
      <seq>ctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtcagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6791" stop="5008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6491" g_stop="6462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="167" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="214" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5308" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="482" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E356089" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6491" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAG</genome_strand>
        <mrna_strand>CTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTCAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269524" ref_strand="+" ref_description="SGN-E269524 [cLEM-2-C15]">
      <seq>ctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6791" stop="5008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6491" g_stop="6462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="167" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="214" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5308" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="482" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E269524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6491" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAG</genome_strand>
        <mrna_strand>CTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337090" ref_strand="+" ref_description="SGN-E337090 [cTOE-7-G6]">
      <seq>ggtcaagtcatcacctgccaagctgcggtggcctgggaacccaaccaagcccttggtgattgaggatgtgccaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgccttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6783" stop="5009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6483" g_stop="6462" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="162" r_length="140" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5309" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="476" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E337090" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6483" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAA-CAAGCCCTTGGTGATTGAGGATGTG-CAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATG-CTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAA</genome_strand>
        <mrna_strand>GGTCAAGTCATCACCTGCCAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACCAAGCCCTTGGTGATTGAGGATGTGCCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563424" ref_strand="+" ref_description="SGN-E563424 [1865]">
      <seq>ctttgatcctgtggtctgtaaatcatggctacacaaggtcaagtcatcaccggtggaaagctgcgtgtggcctgggaacccaacgaagcctttggtgattgagagatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccttggtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgaaggagtgactgatgttcagccaggagaccatgttataccttggctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaacagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatccatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatcgatgttagtgtttgccacacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6819" stop="5006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6519" g_stop="6462" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="200" r_length="140" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="248" r_length="48" r_score="0.894"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.89"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5314" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="513" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E563424" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6519" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACC--TGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCG-GTGGCCTGGGAACCCAAC-AAGCCCTTGGTGATTGAG-GATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCAT-GTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTT-GCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAA-AGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCAT-GATGTTAGTGTT</genome_strand>
        <mrna_strand>CTTTGATCCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCGGTGGAAAG........................................................................................................................................CTGCGTGTGGCCTGGGAACCCAACGAAGCCTTTGGTGATTGAGAGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCTTGGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAAGGAGTGACTGATGTTCAGCCAGGAGACCATGTTATACCTTGGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAACAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCCATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATCGATGTTAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323405" ref_strand="+" ref_description="SGN-E323405 [cTOC-7-G19]">
      <seq>gtggctacacaaggtcaagtcatcacctgcgggagctggggtggcctgtgaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgatgttagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6794" stop="5015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6495" g_stop="6462" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="172" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="219" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5315" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="480" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E323405" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6495" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACACAAGGTCAAGTCATCACCTGC-AAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGT</genome_strand>
        <mrna_strand>GTGGCTACACAAGGTCAAGTCATCACCTGCGGGAG........................................................................................................................................CTGGGGTGGCCTGTGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329957" ref_strand="+" ref_description="SGN-E329957 [cTOD-5-O10]">
      <seq>aaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcagtcagtacactgttgtccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6839" stop="5023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6539" g_stop="6462" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="215" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="262" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5323" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="515" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E329957" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6539" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGAT</genome_strand>
        <mrna_strand>AAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276644" ref_strand="+" ref_description="SGN-E276644 [cLEN-14-E9]">
      <seq>ttctgtggtctgtaaatcatggctacacttggtcaagtcatgacctgcaaagctgctgtggtctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttaccatgtgttcttggtcatgaggctgcggggatagtaaaaagtgttggtgagggagtgactgacgttcatccaggagaccatgttataccttgctaccatgcagaatgcagagaatgcctgctctgcatatcaggaaagaccaatctttgtggtaaagttagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaaccttcaatcagtacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6813" stop="5035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6513" g_stop="6462" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="189" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="236" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5335" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="477" r_length="241" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E276644" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6513" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACT</genome_strand>
        <mrna_strand>TTCTGTGGTCTGTAAATCATGGCTACACTTGGTCAAGTCATGACCTGCAAAG........................................................................................................................................CTGCTGTGGTCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTACCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAAAAAGTGTTGGTGAGGGAGTGACTGACGTTCATCCAGGAGACCATGTTATACCTTGCTACCATGCAGAATGCAGAGAATGCCTGCTCTGCATATCAGGAAAGACCAATCTTTGTGGTAAAGTTAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAATCAGTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290302" ref_strand="+" ref_description="SGN-E290302 [cLET-5-N18]">
      <seq>ttttttttatttttatttactttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttcaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6831" stop="5048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6531" g_stop="6462" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="77" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="214" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="261" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5348" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="489" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E290302" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6531" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTT</genome_strand>
        <mrna_strand>TATTTTTATTTACTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240801" ref_strand="+" ref_description="SGN-E240801 [cLED-24-D1]">
      <seq>atcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcatgttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6045" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5745" g_stop="5700" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5575" g_stop="5354" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="268" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E240801" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5745" e_stop="5700"/>
          <exon e_start="5575" e_stop="5354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTC</genome_strand>
        <mrna_strand>ATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCATGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699148" ref_strand="+" ref_description="SGN-E699148 [FA08DC12]">
      <seq>gctgcggtggcctgctaacccaacaagcccttggtgattgacgatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatactacaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccacgcaaaatgcagagaatgcaagttctgcacatcaggaaagaccattctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatgaaaaaccgatctatcatttcatgggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6626" stop="5056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6326" g_stop="6189" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="185" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5356" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="405" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E699148" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6326" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACT</genome_strand>
        <mrna_strand>GCTGCGGTGGCCTGCTAACCCAACAAGCCCTTGGTGATTGACGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATACTACAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCACGCAAAATGCAGAGAATGCAAGTTCTGCACATCAGGAAAGACCATTCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGAAAAACCGATCTATCATTTCATGGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479636" ref_strand="+" ref_description="SGN-E479636 [cSTD-10-B8]">
      <seq>attttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagcggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatcatttcatgggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6828" stop="5057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6529" g_stop="6462" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="205" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="252" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5357" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="471" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E479636" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6529" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAAC</genome_strand>
        <mrna_strand>ATTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGCGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269965" ref_strand="+" ref_description="SGN-E269965 [cLEM-7-H3]">
      <seq>tagagtcatcctcaaaaacactatttttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcanccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtcgattttctatcaatggaaaaccgatctatcatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6852" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6552" g_stop="6462" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="228" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="275" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5363" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="488" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E269965" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6552" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCAT</genome_strand>
        <mrna_strand>TAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCANCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472998" ref_strand="+" ref_description="SGN-E472998 [cSTB-30-P7]">
      <seq>ttttttctctgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6826" stop="5069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6525" g_stop="6462" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="201" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="248" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5369" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="455" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E472998" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6525" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCA</genome_strand>
        <mrna_strand>TTTTTTCTCTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400203" ref_strand="+" ref_description="SGN-E400203 [cSTC-5-H3]">
      <seq>aacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccgggaagttcgggttaaagttttgtatactgctctttgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccatgcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgcaagagtcgattttctatcaatggaaaaccgatctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6610" stop="5070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6310" g_stop="6189" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="168" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5370" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="374" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E400203" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6310" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATC</genome_strand>
        <mrna_strand>AACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGG-GAAGTTCGGGTTAAAGTTTTGTATACTGCTCTTTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCATGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGCAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294764" ref_strand="+" ref_description="SGN-E294764 [cLET-17-B1]">
      <seq>ggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtataaagtgttggtgagggagtgactgaggttcatccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaaggtctgcatatcaggacagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaagagtccattttatatcaatggaaaaccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6793" stop="5074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="6462" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="169" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="216" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5374" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="418" r_length="202" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E294764" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATC</genome_strand>
        <mrna_strand>GGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTATAAAGTGTTGGTGAGGGAGTGACTGAGGTTCATCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGGTCTGCATATCAGGACAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCCATTTTATATCAATGGAAAACCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260192" ref_strand="+" ref_description="SGN-E260192 [cLEG-52-H22]">
      <seq>gcgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtgacaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagggctgctactggagtgggagttatgatgaacgaccgtaaaagtcgattttctatccatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6565" stop="5081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6266" g_stop="6189" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="125" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5381" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="320" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E260192" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6266" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAA</genome_strand>
        <mrna_strand>GCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAAAGTCGATTTTCTATCCATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442386" ref_strand="+" ref_description="SGN-E442386 [cSTA-33-C10]">
      <seq>ctttaaagcactattttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatctttgtggtaaagtaagagctgctactggagtgggagttatgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6842" stop="5112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6542" g_stop="6462" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="217" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="264" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5412" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="428" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E442386" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6542" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACG</genome_strand>
        <mrna_strand>CTTTAAAGCACTAT-TTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGAGCTGCTACTGGAGTGGGAGTTATGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570017" ref_strand="+" ref_description="SGN-E570017 [14536]">
      <seq>cacaacgtcaagtcatcactgcaaatctgcggtggctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgcataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggcatagtagaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagaggaatgcaagttctggaaatcaggaaagagcaatctttgtggtaaagtaaggagctgctactggagtgggagttatgattgaacggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6632" stop="5109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6488" g_stop="6462" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="161" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="209" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5413" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="375" r_length="166" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E570017" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6488" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGC-GGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGA-GAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGG-GCTGCTACTGGAGTGGGAGTTATGA-TGAAC</genome_strand>
        <mrna_strand>CACAACGTCAAGTCATCA-CTGCAAAT........................................................................................................................................CTGCGGTGG-CTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTG-CATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGGG............................................................................................................................CATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGGAATGCAAGTTCTGGAAATCAGGAAAGAGCAATCTTTGTGGTAAAGTAAGGAGCTGCTACTGGAGTGGGAGTTATGATTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564602" ref_strand="+" ref_description="SGN-E564602 [2851]">
      <seq>ttgcatttagctgtagactcatcttctttaaagcactattttattttctttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtaaaagtgttggtgagggagtgactgaggttcagccaggagaccatgttataccttgctaccaggcagaatgcagagaatgcaagttctgcaaatcaggaaagaccaatcttggtggtaaagtaagagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6847" stop="5139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6565" g_stop="6462" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="242" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="289" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5439" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="425" r_length="136" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E564602" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6565" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCTATTTGTAGAGTCATCCTC-AAAAA-CACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTG</genome_strand>
        <mrna_strand>TTGCATTTAGCTGTAGACTCATCTTCTTTAAAGCACTATTT-TATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTA-AAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTGGTGGTAAAGTAAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270858" ref_strand="+" ref_description="SGN-E270858 [cLEM-6-M6]">
      <seq>ctttggtgattgaggatgtgcatgtggctccaccgcaagccggtgaagtcctggttaaagttttgtatactgttctctgccacacctatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgatgctgcagggatagtttaaagtgttggttagggagtgactgaggttcaaccactataccatgttataccttgctaccaggcagaatgcagagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6598" stop="5189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6298" g_stop="6189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="157" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5489" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="244" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E270858" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6298" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATG</genome_strand>
        <mrna_strand>CTTTGGTGATTGAGGATGTGCATGTGGCTCCACCGCAAGCCGGTGAAGTCCTGGTTAAAGTTTTGTATACTGTTCTCTGCCACACCTATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGATGCTGCAGG............................................................................................................................GATAGTTTAAAGTGTTGGTTAGGGAGTGACTGAGGTTCAACCACTATACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723309" ref_strand="+" ref_description="SGN-E723309 [FC20AD12]">
      <seq>aacccaacaagcccttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggccatgaggctgcggggatagtaaaaagtgttggtgagggagtgactgatgttcatccaggagaccatgttataccttgctaccaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6610" stop="5204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6310" g_stop="6189" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="169" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5575" g_stop="5506" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="239" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E723309" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6310" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAG</genome_strand>
        <mrna_strand>AACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGCCATGAGGCTGCGGG............................................................................................................................GATAGTAAAAAGTGTTGGTGAGGGAGTGACTGATGTTCATCCAGGAGACCATGTTATACCTTGCTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211873" ref_strand="+" ref_description="SGN-E211873 [cLEC-66-P20]">
      <seq>tttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagtccgggttaaagttttgtatactgctctctgccacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtaaaaaatgttggtgagggagtgactgaggttcagccaggagaccatgttataccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="5213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6518" g_stop="6462" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="194" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="241" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5513" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="304" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E211873" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6518" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTG</genome_strand>
        <mrna_strand>TTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTAAAAAATGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274674" ref_strand="+" ref_description="SGN-E274674 [cLEN-13-E8]">
      <seq>tggctacacaaggtcaagtcatcacctgctatgctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccatcgcaagccggtgaagtccgggttaaagttttgtatactgctctctgacacaccgatgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcggggatagtataaagtgttagtgagggagtgactgatgttcacccagaagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6794" stop="5226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6494" g_stop="6462" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="170" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="217" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5526" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="267" r_length="50" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E274674" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6494" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACC</genome_strand>
        <mrna_strand>TGGCTACACAAGGTCAAGTCATCACCTGCTATG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCATCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGACACACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG............................................................................................................................GATAGTATAAAGTGTTAGTGAGGGAGTGACTGATGTTCACCCAGAAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445713" ref_strand="+" ref_description="SGN-E445713 [cSTA-18-E6]">
      <seq>taaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggctccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctctgccataccgacgcttatacctggagtggcaaggatcctgagggtctcttcccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6801" stop="5244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6501" g_stop="6462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="177" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="224" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5544" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="256" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E445713" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6501" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTG</genome_strand>
        <mrna_strand>TAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTCTGCCATACCGACGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440216" ref_strand="+" ref_description="SGN-E440216 [cSTA-15-N20]">
      <seq>ttttttttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatactgctctttgccataccgatgcttatacctggagtggcaaggatcctgagggtctctttccatgtgttcttggtcatgaggctgcagggatagtagaaagtgttggtgagggagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6823" stop="5246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6523" g_stop="6462" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6189" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="199" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5746" g_stop="5700" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5575" g_stop="5546" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="276" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E440216" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6523" e_stop="6462"/>
          <exon e_start="6325" e_stop="6189"/>
          <exon e_start="5746" e_stop="5700"/>
          <exon e_start="5575" e_stop="5546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAGGTAATCTAATCCATACATCTTTCTCCGTTTTATTAGTAATTGCAAATTTTTGGTATGAGTTAAATTTGATGAAAATCTAAGTGATTTGGGATTGATGAATAGTTGAAATTTAGAGAACGGAGTTGAAGCTTTTTGCATTTCTGCAACAATGTTAATTTGTTTTGGATGGCTAATGTTGTGACATATGGAATTTCATTGAAACATGCATACCCAGATTTTAGGTTCTTCAAACCATTTATGCTCAAGGGTATTTGCAGAATGGCAAGAATTTTTAGTTCTTTCCTTCTTTTATGAAAAATTTCTTGCATTTCATTTGTGGTTTTCTGGAAATTGGAGAAAGATAAGTCTGGAGTCAATGGTTTAAGATCATTAGTTTATTGAACTATTTCTTGTTGTTTGGTATTGCACTAACAATCTAACACATGTTTCTTTTTCCTTGAAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGTACGTGCTCTCTTTGTGTCATAGTGTTTTGATTGAATGTACTAGCTTCGATTGAAGCTAAACAAGATTTTTTCTGGATGCCATTTTTCTTGGTCTTAGGCTCTTAGCTATCTAAAATTTGCAGGATAGTAGAAAGTGTTGGTGAGGGAGTGAC</genome_strand>
        <mrna_strand>TTTTTTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATACTGCTCTTTGCCATACCGATGCTTATACCTGGAGTGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGAGGGTCTCTTTCCATGTGTTCTTGGTCATGAGGCTGCAGG............................................................................................................................GATAGTAGAAAGTGTTGGTGAGGGAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576965" ref_strand="+" ref_description="SGN-E576965 [31598]">
      <seq>gcacgaggtttgattctgtggtctgtaaatcatggctacacaaggtcaagtcatcacctgcaaagctgcggtggcctgggaacccaacaagcctttggtgattgaggatgtgcaggtggccccaccgcaagccggtgaagttcgggttaaagttttgtatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="6818" stop="5929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6526" g_stop="6462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6325" g_stop="6229" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E576965" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6526" e_stop="6462"/>
          <exon e_start="6325" e_stop="6229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGGTACTTTTTTTTTTTTTTACTCTCTCTGCATCTTCATCTTACTATATATGTGTGTCACTTGCACGTTTTTTGCTTTCTATAAACCCTAAATGTTGTAGCTTAATGTATGATTATGGATTTTGAAAATGGTGTATAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATAC</genome_strand>
        <mrna_strand>GCACGAGGTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG........................................................................................................................................CTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGATGTGCAGGTGGCCCCACCGCAAGCCGGTGAAGTTCGGGTTAAAGTTTTGTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21435" stop="20276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21135" g_stop="20576" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21135" e_stop="20576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTTCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGAATATAATCAAGAATAAAAGATGGCAATAATAACCCACCAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTACAGTAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTT-CTCTGAAGATTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGTTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTGCTCAAAACGACTAAACAGGTCGTTACATAT</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGA-CTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21436" stop="20271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21136" g_stop="20588" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21136" e_stop="20588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTTCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGAATATAATCAAGAATAAAAGATGGCAATAATAACCCACCAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTACAGTAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTT-CTCTGAAGATTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGTTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTGCTCAAAACGACTAAACAG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGA-CTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21435" stop="20289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21135" g_stop="20589" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21135" e_stop="20589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTTCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGAATATAATCAAGAATAAAAGATGGCAATAATAACCCACCAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTACAGTAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTT-CTCTGAAGATTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGTTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGA-CTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21435" stop="20362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21135" g_stop="20662" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21135" e_stop="20662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTTCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGAATATAATCAAGAATAAAAGATGGCAATAATAACCCACCAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTACAGTAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTT-CTCTGAAGATTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGA-CTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21445" stop="22282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21745" g_stop="21982" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21745" e_stop="21982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCAGAGTGTCACGTACCGACATAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="21446" stop="22522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21746" g_stop="22223" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21746" e_stop="22223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCAGAGTGTCACGTACCGACATAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATGTTACCT-G-ATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACC</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="22237" stop="23121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22537" g_stop="22821" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22537" e_stop="22821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTC-TTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACGAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="23560" stop="22528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23260" g_stop="22828" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23260" e_stop="22828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTCACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACATCCTCCCACGACCTCTATCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="22595" stop="23748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22895" g_stop="23448" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22895" e_stop="23448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTGAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="23917" stop="22599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23618" g_stop="22899" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23618" e_stop="22899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTC-ACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="23915" stop="22652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23615" g_stop="22952" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23615" e_stop="22952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24555" stop="23166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24255" g_stop="23466" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24255" e_stop="23466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24479" stop="23182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24179" g_stop="23482" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24179" e_stop="23482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="23222" stop="25230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23522" g_stop="23694" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23695" i_stop="24438" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24439" g_stop="24966" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23522" e_stop="23694"/>
          <exon e_start="24439" e_stop="24966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAAGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGCCAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTTATCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTAGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGACTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATACTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCAGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCAGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTAGTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24635" stop="23323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24335" g_stop="23572" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24335" e_stop="23572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTG-TGGACTGAAACAAAGTTGGGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24553" stop="23420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24253" g_stop="23720" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24253" e_stop="23720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATCAA-CAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24639" stop="23481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24339" g_stop="23781" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24339" e_stop="23781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25022" stop="23880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24722" g_stop="24180" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24722" e_stop="24180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACCACCGAAACTGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCATACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25249" stop="23888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24949" g_stop="24188" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24949" e_stop="24188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGACTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACTGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCATACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="24846" stop="23920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24546" g_stop="24216" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24546" e_stop="24216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25249" stop="23989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24949" g_stop="24289" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24949" e_stop="24289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGACTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACTGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCATACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25318" stop="24060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25018" g_stop="24360" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25018" e_stop="24360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGACTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACTGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCATACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25767" stop="24489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25467" g_stop="24788" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25467" e_stop="24788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGACTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25838" stop="24526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25538" g_stop="24826" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25538" e_stop="24826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25838" stop="24643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25538" g_stop="24943" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25538" e_stop="24943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25838" stop="24713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25538" g_stop="25013" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25538" e_stop="25013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="25767" stop="24809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25467" g_stop="25109" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25467" e_stop="25109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="27972" stop="29082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28272" g_stop="28676" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28272" e_stop="28676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTATACTCTTAATAGTGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATTCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTAATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTA-AGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="29358" stop="28422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29058" g_stop="28722" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29058" e_stop="28722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGGTAACATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCACTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCATGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="28432" stop="29269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28732" g_stop="28969" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28732" e_stop="28969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGTGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="28433" stop="29509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28733" g_stop="29210" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28733" e_stop="29210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGTGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATGTTACCT-G-ATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACC</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358519" ref_strand="+" ref_description="SGN-E358519 [cLHT-22-G5]">
      <seq>aaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggcttcgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagtagaggcttacttgaaggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="43391" stop="34750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43091" g_stop="43011" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43010" i_stop="35395" i_length="7616">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35394" g_stop="35050" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="429" r_length="347" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E358519" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43091" e_stop="43011"/>
          <exon e_start="35394" e_stop="35050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTTGAAAAATTTTATGAGCTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATATT-ATTTTGAAGATATATGTTGTCACGACCCAAAACGTGTCGTGAGTGGCACCCACATTTATCCTCCTATGTGAGCGAACAAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGGAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTATAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAGGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGACCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGGAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTACCGGAACGTGGCACTCCGATCCTCATATACTATCCTGGTGTCGGAATGTGACACCCGATCGATATTCTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTTGGAACGTGACACTCCAATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTATTTTCGTTCATCAAGCCTTCTTTTATACCAATGCATCATCATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACCATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGTTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCTTATTTCCTATATTTAAACCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAGATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGTCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTGTCAATGTTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATATGACCACAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAAAAAAATAATGATAATATGACATATATACATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACATGCTGTTCGTCGTTTTTCTTTTCGATTGTTTTTCTTCTCCCGCTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATATAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTTATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACAATAGATACCAATTTACCCATCATTCGTCCTCGAACGATCCAAAGGAAGGCAATGCAAGAAAGGGTAGTCGTCTCAGAAGTTCATTCGAAATAGTACTACCCTTGGTCTTATACCAAAAGTGTTAAACCATCCAATTGAAGATCTACACCTCCTCACAACAATACCTTAAATGGGTCCATCTCACTACTTGAGGAATAATTATTGATGTATGTAAACTCAACTAACAACAAAACTATTTCTAATAATAGATTTTTCAACTGATCTATTCTCCAACTAGACCTTGACACAACCATCTGAACAAATATTATCTTACATAACCACGATAAAATTTTAAAGCAAAAGTGGCTACAACCAGAAGTGGATTTTAACCAACTACCACACACTCATAATGCACAAACCATCACAGATCTTATCAGGATTTTCTTTTCACAACCCAATCTCATCACAAGCTTAAGTGATGAAAATATTAGCTTTAGACATCGATTACTCATCAAGGGAGAGTCAACATATCTAACCCAGGGAAGAATAATATCAAGTAAACACCAACAAGGGATACACTTCAAAATGCAGAACCTCGAACATTACTATTAGGCAATTGTAACTCTTCATAGCAGCTCTTATATAGATTCTCATAAGCAAGTTTGTGCGTATAGAACTACTGATATACTTTAGCTATCCCAAACAACACCAATTATATCATAACTAAAATATCAAGTTTGCCCAAGGATCCTACCCTATCAAGAGGACACAAGAGGATCTTTACATCCGATTCACCACTAGAAATCAACCTATAGATGTGAAAACACGTGTGGACGTAAAAAAAATGAATCATACTCTAAATCACACCTGAAATGAAGTAGTTGTTCATGTAAGAGTGTATATAACCAAGGTCGAATAACTTCAGATATATTTTTTTTTCAATAGTTTCCATATCAAACATCTTCATTCATCTGACTCTATCTCTTTGATTTTCTAGCTATCCACAATCACCAATTTAGTCCCTATTATAATTGCACACATACTTACTTTATCGAACCCTACATCCACTGAAGTCGACACTTTTATTACTAACAAAACATCATAACCACATCGATCATCTACCTTACTCCCAAACCACCATCCTTATCTTCTATTTAAGCATATCATGACAATTACGAGTTCCAAACAAGGCTACTAACATTATTTAAAATTCTATAGTACCTTTTCATCATGATAAACTATTAAATCAAACCATAAGTCAACCTCACACCTCTTCCACATATCATGCTTTAGCTACCATTCTAAACCATCACATTCCTCATGCCAACACTTAGGAAGTTTCTTGGTCATTCAAATTATTATGTATCCTATTAGCTCATAACCTCTATTCACCATTAAATATCTATGTAACGCATCATAATATTCTATGTAATCCCATCAGTAGAGTAGCATTATTCCAACTCTAAATTCTTAATAACCATGTAGAATTATATTACACCTTATGCATCATTCTTAAGTCATCTATACAAATTTGAGCAATCTAACCCCATGTAAAATACTAAATTCTTCATGCCTCATTGTTTGCAATCCAAATCAAAACTCAATCTTTATAAAAGTCGATGATAAATTGTAGTAAGTCTATATCGAACTACTTCACATCTCACATTCATATCTAAGCTCATAGGCAAAAATCAATACAACCATCAACTACAACCCATGGGTTTATACGAGAGGTCTTATTCCTTCACTTTTCTCAAATTCTTCTCATGGTACAAAATTTTATTCGACCTTTCAATATATCAATATTCCTGTTTCTTTAGATCACTCATCGATCTCGTCCTTTTACCAACAACCCATGACATTTTACTTCACATTCTAAATCAAAACTTAGAAGAAAACTTTTCTTAGATCCTTTAACAATCAAAAGTAATAAACTTTATGATCCAAAACATGCATAAGTTCTTTCACATGCTTAATACCGATGCAATCAATCATTTATTACCTTACAAATTCATACCTTGAAAAAAAATTCACCAAGAATGCAGACTTATAATGAAAAGTTTGAATTTTAAGTCCAATTGTGTAACCCAATTTATATGCACTTTCTTGCTAAATCTTCAATTTACTTCACCCAAGTATATCCACTAGGACTTTCTTTCCCTATAAGTCTGTCATGCTAGTATCAATCTACCTTTTGAAGCTTAAGATAAAACCACCAGTCCTCACTCAAAACCCTCAAGATACATTGCACAGTTTAAGTTGTGTTAATATTTGTACCAAAGATCCACCACTAAAGATTTTCTTTAAAATAATGCTCAACCACTAAAATTTTCCTTCAAAATAATGCTCAATCTAAGTTCGTGTAGTAATAAACTAGTTGGTTTCTCAAATGTGAATGCAACACTAAATCTTATTATCTGACCATGTCGTACAACTTGTAACTCCTTTAGTAATTAGTATTCATACTTGACAATCGACGTACCTGTTTCTACATAACCCTAGTTCTGCCACACCGTGAAAGTCCATTAAATACCTTACTAGAACACATCATACCTGTCCATAATATCCTACCCAAATAGCCCACATATTTCTACCCATTGAATAATCACAAAACATTATCGAACATGTTCTCTCTCTGGACCAAACAATTTTTTTTACTTCTTAGATCAATTCAATAACAAAAATAACACACTTCCTAACTCTAACCAAGTAAGCATCGATGACTTTCTCTAATATACCCTCACTCTATGAAGTCATAGTAGTGTCTTTATTAACCGACACTCTACATGAGACTACCACCATATTTTGCGATCGAGAAAATATATCTATTTCTAAGGACATATTTTTTTTTCTTTTGGTTGTTGCTATTTCAACTTCAAATACTCTAGTAGTACCCATATTTGAAATAGAGTGAAGAATTTCAGATACCAACTTGTATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTGTAGACTCTCAAAGAAAAGTAAGGGCGTCCCCCTACCGTTCCTCAAGACTCTATTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAAATGTGTCGCGAGTGGCACCCACATTTATCCTCCTATGTGAGTGAACCAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGAAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAAGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATAAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAGCCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGAAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTGCCGGAACGTGGCTCTCCGATCCTCATATACAATCCTGGTGTCGAAATGTGACACCCGATCCATATTCTATCCTGGTATCGGAACTTGACACTCCGATCCTGATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTATTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACAATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGCTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCCTATTTCCTGTATTTAAGCCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAAATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGCCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTTTCAATATTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATAATATGACAGCAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAATAAAATAATGATAATATGACATATATGCATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACGTGTTGTTCGTCGTTCTTCTTTTCGATTGTTTTTCTTCTCCCGTTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATAGAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTCATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGA---CTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATTTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTAAATACGAAAGTAGAGGCTTACTTGAGGAATTTGTTTGCGATATATGTAAGTAAGTATGGAAAATTTTCCAAAAATCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</genome_strand>
        <mrna_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGT-AAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAAGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550684" ref_strand="+" ref_description="SGN-E550684 [TUS-50-B11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="43604" stop="34802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43304" g_stop="43011" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43010" i_stop="35395" i_length="7616">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35394" g_stop="35102" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="590" r_length="295" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E550684" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43304" e_stop="43011"/>
          <exon e_start="35394" e_stop="35102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACATAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGATTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGTAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAGCTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATATT-ATTTTGAAGATATATGTTGTCACGACCCAAAACGTGTCGTGAGTGGCACCCACATTTATCCTCCTATGTGAGCGAACAAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGGAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTATAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAGGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGACCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGGAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTACCGGAACGTGGCACTCCGATCCTCATATACTATCCTGGTGTCGGAATGTGACACCCGATCGATATTCTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTTGGAACGTGACACTCCAATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTATTTTCGTTCATCAAGCCTTCTTTTATACCAATGCATCATCATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACCATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGTTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCTTATTTCCTATATTTAAACCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAGATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGTCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTGTCAATGTTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATATGACCACAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAAAAAAATAATGATAATATGACATATATACATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACATGCTGTTCGTCGTTTTTCTTTTCGATTGTTTTTCTTCTCCCGCTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATATAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTTATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACAATAGATACCAATTTACCCATCATTCGTCCTCGAACGATCCAAAGGAAGGCAATGCAAGAAAGGGTAGTCGTCTCAGAAGTTCATTCGAAATAGTACTACCCTTGGTCTTATACCAAAAGTGTTAAACCATCCAATTGAAGATCTACACCTCCTCACAACAATACCTTAAATGGGTCCATCTCACTACTTGAGGAATAATTATTGATGTATGTAAACTCAACTAACAACAAAACTATTTCTAATAATAGATTTTTCAACTGATCTATTCTCCAACTAGACCTTGACACAACCATCTGAACAAATATTATCTTACATAACCACGATAAAATTTTAAAGCAAAAGTGGCTACAACCAGAAGTGGATTTTAACCAACTACCACACACTCATAATGCACAAACCATCACAGATCTTATCAGGATTTTCTTTTCACAACCCAATCTCATCACAAGCTTAAGTGATGAAAATATTAGCTTTAGACATCGATTACTCATCAAGGGAGAGTCAACATATCTAACCCAGGGAAGAATAATATCAAGTAAACACCAACAAGGGATACACTTCAAAATGCAGAACCTCGAACATTACTATTAGGCAATTGTAACTCTTCATAGCAGCTCTTATATAGATTCTCATAAGCAAGTTTGTGCGTATAGAACTACTGATATACTTTAGCTATCCCAAACAACACCAATTATATCATAACTAAAATATCAAGTTTGCCCAAGGATCCTACCCTATCAAGAGGACACAAGAGGATCTTTACATCCGATTCACCACTAGAAATCAACCTATAGATGTGAAAACACGTGTGGACGTAAAAAAAATGAATCATACTCTAAATCACACCTGAAATGAAGTAGTTGTTCATGTAAGAGTGTATATAACCAAGGTCGAATAACTTCAGATATATTTTTTTTTCAATAGTTTCCATATCAAACATCTTCATTCATCTGACTCTATCTCTTTGATTTTCTAGCTATCCACAATCACCAATTTAGTCCCTATTATAATTGCACACATACTTACTTTATCGAACCCTACATCCACTGAAGTCGACACTTTTATTACTAACAAAACATCATAACCACATCGATCATCTACCTTACTCCCAAACCACCATCCTTATCTTCTATTTAAGCATATCATGACAATTACGAGTTCCAAACAAGGCTACTAACATTATTTAAAATTCTATAGTACCTTTTCATCATGATAAACTATTAAATCAAACCATAAGTCAACCTCACACCTCTTCCACATATCATGCTTTAGCTACCATTCTAAACCATCACATTCCTCATGCCAACACTTAGGAAGTTTCTTGGTCATTCAAATTATTATGTATCCTATTAGCTCATAACCTCTATTCACCATTAAATATCTATGTAACGCATCATAATATTCTATGTAATCCCATCAGTAGAGTAGCATTATTCCAACTCTAAATTCTTAATAACCATGTAGAATTATATTACACCTTATGCATCATTCTTAAGTCATCTATACAAATTTGAGCAATCTAACCCCATGTAAAATACTAAATTCTTCATGCCTCATTGTTTGCAATCCAAATCAAAACTCAATCTTTATAAAAGTCGATGATAAATTGTAGTAAGTCTATATCGAACTACTTCACATCTCACATTCATATCTAAGCTCATAGGCAAAAATCAATACAACCATCAACTACAACCCATGGGTTTATACGAGAGGTCTTATTCCTTCACTTTTCTCAAATTCTTCTCATGGTACAAAATTTTATTCGACCTTTCAATATATCAATATTCCTGTTTCTTTAGATCACTCATCGATCTCGTCCTTTTACCAACAACCCATGACATTTTACTTCACATTCTAAATCAAAACTTAGAAGAAAACTTTTCTTAGATCCTTTAACAATCAAAAGTAATAAACTTTATGATCCAAAACATGCATAAGTTCTTTCACATGCTTAATACCGATGCAATCAATCATTTATTACCTTACAAATTCATACCTTGAAAAAAAATTCACCAAGAATGCAGACTTATAATGAAAAGTTTGAATTTTAAGTCCAATTGTGTAACCCAATTTATATGCACTTTCTTGCTAAATCTTCAATTTACTTCACCCAAGTATATCCACTAGGACTTTCTTTCCCTATAAGTCTGTCATGCTAGTATCAATCTACCTTTTGAAGCTTAAGATAAAACCACCAGTCCTCACTCAAAACCCTCAAGATACATTGCACAGTTTAAGTTGTGTTAATATTTGTACCAAAGATCCACCACTAAAGATTTTCTTTAAAATAATGCTCAACCACTAAAATTTTCCTTCAAAATAATGCTCAATCTAAGTTCGTGTAGTAATAAACTAGTTGGTTTCTCAAATGTGAATGCAACACTAAATCTTATTATCTGACCATGTCGTACAACTTGTAACTCCTTTAGTAATTAGTATTCATACTTGACAATCGACGTACCTGTTTCTACATAACCCTAGTTCTGCCACACCGTGAAAGTCCATTAAATACCTTACTAGAACACATCATACCTGTCCATAATATCCTACCCAAATAGCCCACATATTTCTACCCATTGAATAATCACAAAACATTATCGAACATGTTCTCTCTCTGGACCAAACAATTTTTTTTACTTCTTAGATCAATTCAATAACAAAAATAACACACTTCCTAACTCTAACCAAGTAAGCATCGATGACTTTCTCTAATATACCCTCACTCTATGAAGTCATAGTAGTGTCTTTATTAACCGACACTCTACATGAGACTACCACCATATTTTGCGATCGAGAAAATATATCTATTTCTAAGGACATATTTTTTTTTCTTTTGGTTGTTGCTATTTCAACTTCAAATACTCTAGTAGTACCCATATTTGAAATAGAGTGAAGAATTTCAGATACCAACTTGTATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTGTAGACTCTCAAAGAAAAGTAAGGGCGTCCCCCTACCGTTCCTCAAGACTCTATTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAAATGTGTCGCGAGTGGCACCCACATTTATCCTCCTATGTGAGTGAACCAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGAAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAAGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATAAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAGCCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGAAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTGCCGGAACGTGGCTCTCCGATCCTCATATACAATCCTGGTGTCGAAATGTGACACCCGATCCATATTCTATCCTGGTATCGGAACTTGACACTCCGATCCTGATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTATTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACAATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGCTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCCTATTTCCTGTATTTAAGCCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAAATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGCCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTTTCAATATTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATAATATGACAGCAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAATAAAATAATGATAATATGACATATATGCATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACGTGTTGTTCGTCGTTCTTCTTTTCGATTGTTTTTCTTCTCCCGTTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATAGAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTCATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGA---CTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATTTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTAAATACGAAAGTAGAGGCTTACTTGAGGAATTTGTTTGCGATATATGTAAGTAAGTATGGAAAATTTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688349" ref_strand="+" ref_description="SGN-E688349 [t3_tus_50_b11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="43604" stop="34802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43304" g_stop="43011" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43010" i_stop="35395" i_length="7616">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35394" g_stop="35102" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="590" r_length="295" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E688349" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43304" e_stop="43011"/>
          <exon e_start="35394" e_stop="35102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACATAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGATTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGTAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAGCTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATATT-ATTTTGAAGATATATGTTGTCACGACCCAAAACGTGTCGTGAGTGGCACCCACATTTATCCTCCTATGTGAGCGAACAAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGGAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTATAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAGGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGACCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGGAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTACCGGAACGTGGCACTCCGATCCTCATATACTATCCTGGTGTCGGAATGTGACACCCGATCGATATTCTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTTGGAACGTGACACTCCAATCCTCATATACTATCCTTGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTATTTTCGTTCATCAAGCCTTCTTTTATACCAATGCATCATCATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACCATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGTTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCTTATTTCCTATATTTAAACCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAGATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGTCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTGTCAATGTTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATATGACCACAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAAAAAAATAATGATAATATGACATATATACATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACATGCTGTTCGTCGTTTTTCTTTTCGATTGTTTTTCTTCTCCCGCTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATATAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTTATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACAATAGATACCAATTTACCCATCATTCGTCCTCGAACGATCCAAAGGAAGGCAATGCAAGAAAGGGTAGTCGTCTCAGAAGTTCATTCGAAATAGTACTACCCTTGGTCTTATACCAAAAGTGTTAAACCATCCAATTGAAGATCTACACCTCCTCACAACAATACCTTAAATGGGTCCATCTCACTACTTGAGGAATAATTATTGATGTATGTAAACTCAACTAACAACAAAACTATTTCTAATAATAGATTTTTCAACTGATCTATTCTCCAACTAGACCTTGACACAACCATCTGAACAAATATTATCTTACATAACCACGATAAAATTTTAAAGCAAAAGTGGCTACAACCAGAAGTGGATTTTAACCAACTACCACACACTCATAATGCACAAACCATCACAGATCTTATCAGGATTTTCTTTTCACAACCCAATCTCATCACAAGCTTAAGTGATGAAAATATTAGCTTTAGACATCGATTACTCATCAAGGGAGAGTCAACATATCTAACCCAGGGAAGAATAATATCAAGTAAACACCAACAAGGGATACACTTCAAAATGCAGAACCTCGAACATTACTATTAGGCAATTGTAACTCTTCATAGCAGCTCTTATATAGATTCTCATAAGCAAGTTTGTGCGTATAGAACTACTGATATACTTTAGCTATCCCAAACAACACCAATTATATCATAACTAAAATATCAAGTTTGCCCAAGGATCCTACCCTATCAAGAGGACACAAGAGGATCTTTACATCCGATTCACCACTAGAAATCAACCTATAGATGTGAAAACACGTGTGGACGTAAAAAAAATGAATCATACTCTAAATCACACCTGAAATGAAGTAGTTGTTCATGTAAGAGTGTATATAACCAAGGTCGAATAACTTCAGATATATTTTTTTTTCAATAGTTTCCATATCAAACATCTTCATTCATCTGACTCTATCTCTTTGATTTTCTAGCTATCCACAATCACCAATTTAGTCCCTATTATAATTGCACACATACTTACTTTATCGAACCCTACATCCACTGAAGTCGACACTTTTATTACTAACAAAACATCATAACCACATCGATCATCTACCTTACTCCCAAACCACCATCCTTATCTTCTATTTAAGCATATCATGACAATTACGAGTTCCAAACAAGGCTACTAACATTATTTAAAATTCTATAGTACCTTTTCATCATGATAAACTATTAAATCAAACCATAAGTCAACCTCACACCTCTTCCACATATCATGCTTTAGCTACCATTCTAAACCATCACATTCCTCATGCCAACACTTAGGAAGTTTCTTGGTCATTCAAATTATTATGTATCCTATTAGCTCATAACCTCTATTCACCATTAAATATCTATGTAACGCATCATAATATTCTATGTAATCCCATCAGTAGAGTAGCATTATTCCAACTCTAAATTCTTAATAACCATGTAGAATTATATTACACCTTATGCATCATTCTTAAGTCATCTATACAAATTTGAGCAATCTAACCCCATGTAAAATACTAAATTCTTCATGCCTCATTGTTTGCAATCCAAATCAAAACTCAATCTTTATAAAAGTCGATGATAAATTGTAGTAAGTCTATATCGAACTACTTCACATCTCACATTCATATCTAAGCTCATAGGCAAAAATCAATACAACCATCAACTACAACCCATGGGTTTATACGAGAGGTCTTATTCCTTCACTTTTCTCAAATTCTTCTCATGGTACAAAATTTTATTCGACCTTTCAATATATCAATATTCCTGTTTCTTTAGATCACTCATCGATCTCGTCCTTTTACCAACAACCCATGACATTTTACTTCACATTCTAAATCAAAACTTAGAAGAAAACTTTTCTTAGATCCTTTAACAATCAAAAGTAATAAACTTTATGATCCAAAACATGCATAAGTTCTTTCACATGCTTAATACCGATGCAATCAATCATTTATTACCTTACAAATTCATACCTTGAAAAAAAATTCACCAAGAATGCAGACTTATAATGAAAAGTTTGAATTTTAAGTCCAATTGTGTAACCCAATTTATATGCACTTTCTTGCTAAATCTTCAATTTACTTCACCCAAGTATATCCACTAGGACTTTCTTTCCCTATAAGTCTGTCATGCTAGTATCAATCTACCTTTTGAAGCTTAAGATAAAACCACCAGTCCTCACTCAAAACCCTCAAGATACATTGCACAGTTTAAGTTGTGTTAATATTTGTACCAAAGATCCACCACTAAAGATTTTCTTTAAAATAATGCTCAACCACTAAAATTTTCCTTCAAAATAATGCTCAATCTAAGTTCGTGTAGTAATAAACTAGTTGGTTTCTCAAATGTGAATGCAACACTAAATCTTATTATCTGACCATGTCGTACAACTTGTAACTCCTTTAGTAATTAGTATTCATACTTGACAATCGACGTACCTGTTTCTACATAACCCTAGTTCTGCCACACCGTGAAAGTCCATTAAATACCTTACTAGAACACATCATACCTGTCCATAATATCCTACCCAAATAGCCCACATATTTCTACCCATTGAATAATCACAAAACATTATCGAACATGTTCTCTCTCTGGACCAAACAATTTTTTTTACTTCTTAGATCAATTCAATAACAAAAATAACACACTTCCTAACTCTAACCAAGTAAGCATCGATGACTTTCTCTAATATACCCTCACTCTATGAAGTCATAGTAGTGTCTTTATTAACCGACACTCTACATGAGACTACCACCATATTTTGCGATCGAGAAAATATATCTATTTCTAAGGACATATTTTTTTTTCTTTTGGTTGTTGCTATTTCAACTTCAAATACTCTAGTAGTACCCATATTTGAAATAGAGTGAAGAATTTCAGATACCAACTTGTATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTGTAGACTCTCAAAGAAAAGTAAGGGCGTCCCCCTACCGTTCCTCAAGACTCTATTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAAATGTGTCGCGAGTGGCACCCACATTTATCCTCCTATGTGAGTGAACCAACCAATCTAAACCCCAACATTTCAACCATAAATAACATAATATCATGCGAAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCTAAAAACTCAATACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAATTTACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAAGACGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGACAGTACGTTTGCTGTACTCCACAAATAACAAAGGAAGAAACATACAAGTAAGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATAAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAGCCCTTGGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGGAAATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCTCTTTGCTAATCCTGGTGCCGGAACGTGGCTCTCCGATCCTCATATACAATCCTGGTGTCGAAATGTGACACCCGATCCATATTCTATCCTGGTATCGGAACTTGACACTCCGATCCTGATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGTTTCTTTTCAAGATTTAGGATTCAATAGCTTCATCATGCTTATTTTATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCTCTATTAAGAGTTTACTACGAATAGCATAAACAATAACCTACCTCCACCGAAGAACCGAAGTCAAGCAAGCTACTTCTCCAATACTTTTTCTTTCATCAATGCCTCCGAACCTTTCCAATCTATGCAACATGCATAATTTATAAGTTAACGCTTCCATAGGCACTTCATTACTCTATTAAGTATAATCTAAACCCAATAGTCATCAAATACAAATCTATATTCAAGTTTCTTATCTTGAGTTCAATTAATATGTCAAGCCTCCTATTTCCTGTATTTAAGCCTAAGGTTAAGTCATTAATTTTCTGAATAACATAACTTTAATGGTATTCAAATAATATACTACACTCAATATTTAATTACCTATCTTAATATATCAAAATTGAATCATAATAAAATAACTATACAAAGAAGAACAAAAGTAATTAAAACCTAAATAACTTGCCACGAAGTGGTACTAATTTAAATTATTCTTATTGTATTACCATACGGTAACATTTTCAATATTACCTATTAATAGACATAAACAAACTTTGACACCTAAATAAAATAATAATAATAATAATATGACAGCAGAAAAAGAGTGCAAATTGAATTTGCACTTCTGATTCCCATTCCCTCAACTTTGCAATACAATATGATTAATAATAATAATAAAATAATGATAATATGACATATATGCATATAAACAATTGCAGCGATTGAGGCAATCAATGCTTACGTGTTGTTCGTCGTTCTTCTTTTCGATTGTTTTTCTTCTCCCGTTGTGCGCCTACTTTCTTTTGCTTTCTTCTACTGATTTTTCTAGTACCCTAATTATTATATTTGCTTGATAGAAAAATAGTAAAAGTGCTCCACTATTAGTTTTAATATTATTTTCTCTAACCACTAACTAAATAAATTATTAAAACTACCCCACTAATTTCATAATTATAATTATGAAATAGTTTAAAATACCCATTTAGAATCTAACGAAAAATATTTTATGAAACACAAGGCTTTAACTCTCAAAACGACCAAAAGGGTCGTTACATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGA---CTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATTTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTAAATACGAAAGTAGAGGCTTACTTGAGGAATTTGTTTGCGATATATGTAAGTAAGTATGGAAAATTTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGT-AAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415599" ref_strand="-" ref_description="SGN-E415599 [STM-21-J15]">
      <seq>aaaacttgtcagtatattctctgacaaagatatccgaatattgaatgtggggacaggtggtgaacgtgtgatttcagaggagcatccaatcacatccctttcactatcaggggatggtaaattcttcatagtaaaccttaatagtcaagagattcatatgtgggatattgcaggcgagtggcttagtcccatgaagtttgaaggtcacaaacaacataagtatgtgatacgctcctgttttggaggattggacagcacttttatcgccagtggtagtgaagattcaaaggtgtacatatggaatcgccgaggttcaaagcctattaagatcttgtgtggccattcaatgactgtgaactgtgtgagctggaatcctaaaaggcctcaaatgctagcttcagcaagtgatgatcaaactattcgcatatgggggcctgatgttcgaagtaaatagtaacgagtaagctggtgtatgcagatggatttttctcaatttcgagttccatttgccatgtaaatctgtttctttctacaaattttggcatgtctattccccctgtaaattggcattgcttccttcaatagggtagctagaaaataattttggctcctcgtggagtgtaagtaaaacttttttcctaaagtttgattgaaagtagtaaaagaaagcaaaactttcttatatcaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="68378" stop="62348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68078" g_stop="67790" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67789" i_stop="63054" i_length="4736">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63053" g_stop="62641" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="696" r_length="407" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E415599" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415599" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68078" e_stop="67790"/>
          <exon e_start="63053" e_stop="62641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTATCAGTATATTTTCTGACAAAGATATCCGAATATTGAATGTGGGGACAGGTGGTGAACATGTGATTTCAGAGGAGTATCCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGCCCCATGAAGTTTGAAGGTCACAGACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAGGTATGCTCGTTCTTTAATGCCCTTCCCTTAACTCCCCACCCTTCCAAAAAAAATCATAATAAGCATGAGATTCAAGAAGTGGTTGAGAACCCTGAGGTCTCAAGTTCAAAACTCAATGGAGACAAAGGAACACTAGGCGATTCTTCCCATCTGTCCTAGCCTTGGCGGACAGGAATTATCCGGAACCTATCGCCGGTGGGAGGTGGAAGGTATCCCTTAGTTAGGAGCTTTGTTCTCCTTTGAATGACTTCATAATATGGGTCCCTTTAAGAAAACGGTGCTTATGAATTAGGACGGCTCTTGTTCATTTTGGCACAATTTATCAGGGAAATTGGATCCTGTGGTGTCCCTATAAAAGGTGCTTGAATTGACTCTTTAGTATCATAATTAGTTTTAATCTGCTAATTTGAATACTAAGATCAATTAGGGTTCTTAGAGCTCTTTTACAAGTTTGGGAATTTTATTTTCGAATTTCACATGTCTTTCAATTTTTGTCTTTAATCTTAATAATTCGTTTCCTTATTATTTTCTTGTTTATTCTGATAACCCGATTCTTATCACCCTCCTTTTTGAAAAATCAACGAACATATTTATCTGCTCGAGCTCTTCCGTCATTGTCTTGGTGGCATTCATGTCATCTGAGCCATAGAAGGATGTTGGTACTTAATACCTGTCTTGATTTGTCTCCTCCACTTCTGGTAATTCATCCTCCATGTTGGTTACTCAGATTTCTATAATTGTTATTTGTCACCTCTTTTGCAGCACCTGTTTGCTCTTTGGTCAGTGACACCGCGAGCATCTTGCTTGCTGCTAACAGATCTTCTTTGATTTGTTTAACTCCTTTCGGTGTTAATTTCAACACTCGGTGGTATGTGGAGGGTACAACACTCATGGCGTAAACCCATGGCATCCCAAGTATAATATTGTACCCCATTTTTCCATTAATTTTTCGAATTAAGTTTTCCGTTAATAGCCTTATATCGGCTCGGTCATCTCGCTGGACATGTTAAATCTAGCCAGGAGCTTTGTAGACGGGATCACTTTGTCTACCAATTTCATTAGCTCTAAGCCCCTCATGTGGACAATATTTGCTGAACTACCTGGATCAATCAACACGCTTAACCATATAAATTAGCTATACCTAAAGAAACTACCTAAGCACTCGTTTGCGGGTACTCCAAGTTGTTCAAATCCTGGTCATGGAAAGAAATTGTTTCTGAATTTGGTATCTCCCGATATCTCTTCTCAAAGCTAAACAATAGCTTAGCCTTTTTCGTCATCGAAACTGTTACTCTGCTGACCTCTCCCCCCGATTATCATATTTATCATATGTCAAGGTGAGTCGAGCTTACTGGGTTGTATGTTTCCTTCTTTCTCCCTCCTGTAGTTGACCTTGGCTCGATTGCTCAAAAACTCTCTTGGATAGTCGTTCCTGAGGAGTATGGCCATCTCCAAGGGCCACCTGCTCTTGGAGATGCCTATGATCCCCCGTTTTATGACTGTGTGTTCCATGAAATTCGCATCCCAGGTTTGGGTCCCTAGGTCCCAGGTTTTGAAAAACGAGCCGCTTTGATGTTTCTCATGGCCGAAGCCAACTGAATAGGACTGATATTGAAACCATACTCCAAGAGTCTCAGGACATTCAACTGCATGGATCACACTTGAGGCTCCAACCACCTCTTGGTTTTGCAGTCTGGTATGGCCTTGATCCCTCCCATTCTGCTTGTCTAACCAAGATCTATCCAGAGGCTGAAAGTTATGGGACGAACTTGGCCTCATTTCGAATGGGTATGGAGGGTATCAACTCTTTGCGAGTTCTGAATCCAATTTCTGTACCTTAAGCATTTTGTAGTGAGATCGAAAAAGATTGTCTTCAACTCAAATTTTTGACTCTTACCGATTATGAACAACAACTCAATTCATATGCTCAAACTCTGTGAGATTTTATTTTACCTTCAGTGAGGTGATCGAGCTCTCAAGGTTCAAACCCTTTGTAAAAGCCTCTGCATCCCAATCATCTAGAACCATCGGCAGCAAGATCCTTTCTCTCTAGAAGCTTGTCATGAAGTCCCTGAGTAGCTTGGAGTCAACCTGCTCGATTTTGAAGATGTCTGCTCTTCTGGGCTGCACCTTCCTAGCTCCAGCATATGCTTTTATAAAATAATCTGCAAGCATATTAAAAAAACTAATAGAATCTTCAGCTAATGAAGAGTACCATACAAGCATTCCTCCGGATAGAATTTTTTCGAAACTTCTTGACCAAAACTGATTCAACCTTGGCTTTAGAAAAGTTGTTCCCCTTAACGACTGTAATGTAAACCAGAATTTGCTCTTGCGGGTCTGTAGTTCCATCATTTTGGGATATCCGACAACCGGAACCTATTCGAAATAAGTTCCGATGCTGAGCTGGGCTTATAAGGCAATTGAGTGTAACTCTAAGAGTCTGGCCCCCTTCAAGTTCGGAGGTGCTCTTGGAATATGGTTCATTCGGTTGTGCAGCTCCTTTAGGCCCAGCCTGAGTTCTTTCCTGATTCACTCCACCATCGACATTCCAATGTCAGACCCGACCCCCATCTGTCAGCCCTGCATTCTTCCAAATGGGCCGCAGTTGAGACCGATTCCTGAATTCCTTGCGATGTTGGTGTTTCTGGTGGTGTTTGACCACTTCTTCAGGCGTTGTGAGAAGCCATTGTGGTCACAATCTTATGGAGCTCCATTACCCTTTTGTCCTGTGCGGTCATGTGGTCCATTATGGACCTGTGTTGAGCAGTCGGAATCTGTAAGAGTCTCCTTAAGGTCGTCCATGTCAGTCCTATCCTCGTCCCGTTGATGATTCACTTCTTTGGGGTTCTTTCTCCCATGCCTCTTCGCTAATTCATGTTCGTCAGATTAATATCTTCTAGATCAACCTCTACTGCATCAGCAGCTGTTAACACTCTTCTTAAAGACCTGTCCAGTCTTGGGCAGCGTTAAGAAGTTGAACTTCAGCCACATTACCATCGTTTTGGTTCACAATTGCTATAAGTTATATCTAGAACACTAACAGATTTAAGCTAGTAAGTAGAGTAGTGGGTTAAACCAACACTACAACTGTCCTGGCCCCACGGTGGACGCCAAACTGTTTATCGGGAGAATGGACAATTGAATTTGTTATGAGGTCAAGGACACACGAATTGATTCAATTCATTAATTAGTTTTTTGGCAGATAGGTTTGTTAATAAACTAGCTTAATTAGAATAATAATTTAGTAAAATAAGCAAAGGAAACAATATAGCTCAGATTCGTGATGTTTCAGTCTTGTTCTGGAGACAACATAGTGTGACCAATTCAGATTCGGAGGCATTTAAGCTTAAGAACTAAGACTTAGCAAAGAATGTAAAATAATAGAAAGTTTGGAGCACAAGAATATCAGTGGATTGCTTCGTATTGTCAAAAATCCAACCCTTTGCAGGTAAGTGGAAACTACTATTTATAGCAACAAAGGTTATATCAGCCAATAGGAAAGCTCCACTCGAGCCATAAGACTGTCTAATGGAAAATGGAAATGCCCCACCTGAAAATACCGTTATGCATGCTAACTAATATTTCCCTGTAATTTGCATGGTCTAATTTGGATATATCGTATCTGCCTTTTTTCCTTTCATTCTCTCTTTGGGCGAAAAATCCCTTTATTCCTCCTCCTTGACTTCTGGCCACTGAGTTCTCGCCTTTTTCCTGAAAATGACCATCTGGTTGACCTGACGATGAAATGAGATCAAGTTAGCCAGACAGTAACTGATCGGTACTCAAGTGATGAATGGTGTGTTTTTCTCGATCCTCTATGCCAGATTGTCTTCCGGCTTCATCCTGATGTTAGGTGTCGTCTTTGTAAGCAGTCACATGTACAAGGTAGTTTTCCCCAATACAAATAGTGGGATTGGGATATGGTGGATAATAATCAAGTAATCATTGGATTATTTGTGATAACATTGATTATTAGGTTAATCTAAATTTGGATGTAAAGTGAATCTAAACATTGCTTTATTCTTGATGAAAATTTGGTGTCAAGAGATATGCTTAGTTTATTAGGTCACTTTATCTGACATACTATTGGTTTATTATCATATGAGATTAAATATAATGACATACCATCAATTATATCCGCCATCAAATAGTGTACAGTTATTAGAGGAAATTAATATGATGTATACTAAAATCTTAGATAGACGAATATAGTAAGCACAATTTTAGATTCCTCTTCTAACTTATCATTTCAAATTCATACAACAAAGTACAAATATTATTAAAAGAAACTGGGAGATGGTACACAAAACAAGTAGTAATAGACTAATAGCTTAAAGAAATTGACATTTAGGTGATCTACGACATTTATTTCTTATTTTGAAAAATGAGTGATGTAATAAATGTATTGCTGATATGTGTATAACCTCAGTTGTTTTGTCACTTCGGTACAAAATGATAACATAGGCCATCCCTTTTCACTTTCCTCTCTTCTCTTACAACCCCCTCTTTGCTTGAACCAAGAGTAGCGGTAATCTAGGTGCACTCAATTGTGATGACACCTTGGCTCTATAGATTAAGAGATACAACTGATATATATTATTATGTTGGATTAGTTTCATTTGTCTTTCCAAGTATGTGATTCCACCCAATCGCCAGTCGCAATGTAAATTCCTTATTTTGTATTGTATATATTGATCCAAGGAAATCATGTGAGATCTTTTGCATTGTTGCAGGTGTACATATGGAATCGCCGAGGTTCAAAGCCTATTGAGATCTTGTGTGGCCATTCAATGACTGTGAACTCTGTGAGCTGGAATCCTAAAAGGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAACTATCCGCATATGGGGGCCTGATGTTCGAAGTAAATAGTAACGAG---CCTGGTATATGCAAATGGATTTTTCTCAATTGCTAGTTCCATTTGCCATGTAAATCTGTTTCTTCTCTACAAATTTTGGCATGTCTATTCCCCCCATGTAAATTGGCATAGCTAGAAAAATAATTTTGTCTCCGCGTGTATGTACAACGCCAACGTTGTGGAGTGTAAGTAAAAACTCTTTCCCTAAAGTTTGATTGAAATTAGTAAAAGAAAGTAAAACTTTCTTATATCAAAGCTAGTG</genome_strand>
        <mrna_strand>AAAACTTGTCAGTATATTCTCTGACAAAGATATCCGAATATTGAATGTGGGGACAGGTGGTGAACGTGTGATTTCAGAGGAGCATCCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGTCCCATGAAGTTTGAAGGTCACAAACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATATGGAATCGCCGAGGTTCAAAGCCTATTAAGATCTTGTGTGGCCATTCAATGACTGTGAACTGTGTGAGCTGGAATCCTAAAAGGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAACTATTCGCATATGGGGGCCTGATGTTCGAAGTAAATAGTAACGAGTAAGCTGGTGTATGCAGATGGATTTTTCTCAATTTCGAGTTCCATTTGCCATGTAAATCTGTTTCTT-TCTACAAATTTTGGCATGTCTATT-CCCCC-TGTAAATTGGCATTGCT--TCCTTCAATAGGGT-AGCTAGAAAAT-AATTTTGGC-TCCTCGTGGAGTGTAAGT-AAAACTTTTTTCCTAAAGTTTGATTGAAAGTAGTAAAAGAAAGCAAAACTTTCTTATATCAAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538082" ref_strand="+" ref_description="SGN-E538082 [TUS-57-A11](-)">
      <seq>ccaatcacatccctttcactatcaggggatggtaaattcttcatagtaacccttaatagtcaagagattcatatgtgggatattgcaggggggtggcttagccccatgaagtttgaaggtcccagacaacataagtatgtgatacgctcctgttttgggggattggacagcacttttatcgccagtggtagtgaagattcaaaggtgtacatagggaatcgccggggtacaaagcctattgagattttgtggggccattcaatgactgtgaactttgtgggcgggaatcctaaaaggcctcaaatgctagtttcagcaagtgatgatcaaactatccgcatatgggggcctgatgttcgaagtaaatagtaacgggctggtatatgcaaagggatttttctcaattgctagttccatttgccaggtaaatttgttttttttctacaaattttggcatgtttattccccccatgtaaattggcatagctagaaaaataattttgtttccgggggtatgtacaaccccaacgttggggggggtaagtaaaaactttttccctaaagtttgattgaaattagtaaaagaaagtaaaacttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="68293" stop="62348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67993" g_stop="67790" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67789" i_stop="63054" i_length="4736">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63053" g_stop="62656" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="601" r_length="397" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E538082" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67993" e_stop="67790"/>
          <exon e_start="63053" e_stop="62656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGCCCCATGAAGTTTGAAGGTCACAGACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAGGTATGCTCGTTCTTTAATGCCCTTCCCTTAACTCCCCACCCTTCCAAAAAAAATCATAATAAGCATGAGATTCAAGAAGTGGTTGAGAACCCTGAGGTCTCAAGTTCAAAACTCAATGGAGACAAAGGAACACTAGGCGATTCTTCCCATCTGTCCTAGCCTTGGCGGACAGGAATTATCCGGAACCTATCGCCGGTGGGAGGTGGAAGGTATCCCTTAGTTAGGAGCTTTGTTCTCCTTTGAATGACTTCATAATATGGGTCCCTTTAAGAAAACGGTGCTTATGAATTAGGACGGCTCTTGTTCATTTTGGCACAATTTATCAGGGAAATTGGATCCTGTGGTGTCCCTATAAAAGGTGCTTGAATTGACTCTTTAGTATCATAATTAGTTTTAATCTGCTAATTTGAATACTAAGATCAATTAGGGTTCTTAGAGCTCTTTTACAAGTTTGGGAATTTTATTTTCGAATTTCACATGTCTTTCAATTTTTGTCTTTAATCTTAATAATTCGTTTCCTTATTATTTTCTTGTTTATTCTGATAACCCGATTCTTATCACCCTCCTTTTTGAAAAATCAACGAACATATTTATCTGCTCGAGCTCTTCCGTCATTGTCTTGGTGGCATTCATGTCATCTGAGCCATAGAAGGATGTTGGTACTTAATACCTGTCTTGATTTGTCTCCTCCACTTCTGGTAATTCATCCTCCATGTTGGTTACTCAGATTTCTATAATTGTTATTTGTCACCTCTTTTGCAGCACCTGTTTGCTCTTTGGTCAGTGACACCGCGAGCATCTTGCTTGCTGCTAACAGATCTTCTTTGATTTGTTTAACTCCTTTCGGTGTTAATTTCAACACTCGGTGGTATGTGGAGGGTACAACACTCATGGCGTAAACCCATGGCATCCCAAGTATAATATTGTACCCCATTTTTCCATTAATTTTTCGAATTAAGTTTTCCGTTAATAGCCTTATATCGGCTCGGTCATCTCGCTGGACATGTTAAATCTAGCCAGGAGCTTTGTAGACGGGATCACTTTGTCTACCAATTTCATTAGCTCTAAGCCCCTCATGTGGACAATATTTGCTGAACTACCTGGATCAATCAACACGCTTAACCATATAAATTAGCTATACCTAAAGAAACTACCTAAGCACTCGTTTGCGGGTACTCCAAGTTGTTCAAATCCTGGTCATGGAAAGAAATTGTTTCTGAATTTGGTATCTCCCGATATCTCTTCTCAAAGCTAAACAATAGCTTAGCCTTTTTCGTCATCGAAACTGTTACTCTGCTGACCTCTCCCCCCGATTATCATATTTATCATATGTCAAGGTGAGTCGAGCTTACTGGGTTGTATGTTTCCTTCTTTCTCCCTCCTGTAGTTGACCTTGGCTCGATTGCTCAAAAACTCTCTTGGATAGTCGTTCCTGAGGAGTATGGCCATCTCCAAGGGCCACCTGCTCTTGGAGATGCCTATGATCCCCCGTTTTATGACTGTGTGTTCCATGAAATTCGCATCCCAGGTTTGGGTCCCTAGGTCCCAGGTTTTGAAAAACGAGCCGCTTTGATGTTTCTCATGGCCGAAGCCAACTGAATAGGACTGATATTGAAACCATACTCCAAGAGTCTCAGGACATTCAACTGCATGGATCACACTTGAGGCTCCAACCACCTCTTGGTTTTGCAGTCTGGTATGGCCTTGATCCCTCCCATTCTGCTTGTCTAACCAAGATCTATCCAGAGGCTGAAAGTTATGGGACGAACTTGGCCTCATTTCGAATGGGTATGGAGGGTATCAACTCTTTGCGAGTTCTGAATCCAATTTCTGTACCTTAAGCATTTTGTAGTGAGATCGAAAAAGATTGTCTTCAACTCAAATTTTTGACTCTTACCGATTATGAACAACAACTCAATTCATATGCTCAAACTCTGTGAGATTTTATTTTACCTTCAGTGAGGTGATCGAGCTCTCAAGGTTCAAACCCTTTGTAAAAGCCTCTGCATCCCAATCATCTAGAACCATCGGCAGCAAGATCCTTTCTCTCTAGAAGCTTGTCATGAAGTCCCTGAGTAGCTTGGAGTCAACCTGCTCGATTTTGAAGATGTCTGCTCTTCTGGGCTGCACCTTCCTAGCTCCAGCATATGCTTTTATAAAATAATCTGCAAGCATATTAAAAAAACTAATAGAATCTTCAGCTAATGAAGAGTACCATACAAGCATTCCTCCGGATAGAATTTTTTCGAAACTTCTTGACCAAAACTGATTCAACCTTGGCTTTAGAAAAGTTGTTCCCCTTAACGACTGTAATGTAAACCAGAATTTGCTCTTGCGGGTCTGTAGTTCCATCATTTTGGGATATCCGACAACCGGAACCTATTCGAAATAAGTTCCGATGCTGAGCTGGGCTTATAAGGCAATTGAGTGTAACTCTAAGAGTCTGGCCCCCTTCAAGTTCGGAGGTGCTCTTGGAATATGGTTCATTCGGTTGTGCAGCTCCTTTAGGCCCAGCCTGAGTTCTTTCCTGATTCACTCCACCATCGACATTCCAATGTCAGACCCGACCCCCATCTGTCAGCCCTGCATTCTTCCAAATGGGCCGCAGTTGAGACCGATTCCTGAATTCCTTGCGATGTTGGTGTTTCTGGTGGTGTTTGACCACTTCTTCAGGCGTTGTGAGAAGCCATTGTGGTCACAATCTTATGGAGCTCCATTACCCTTTTGTCCTGTGCGGTCATGTGGTCCATTATGGACCTGTGTTGAGCAGTCGGAATCTGTAAGAGTCTCCTTAAGGTCGTCCATGTCAGTCCTATCCTCGTCCCGTTGATGATTCACTTCTTTGGGGTTCTTTCTCCCATGCCTCTTCGCTAATTCATGTTCGTCAGATTAATATCTTCTAGATCAACCTCTACTGCATCAGCAGCTGTTAACACTCTTCTTAAAGACCTGTCCAGTCTTGGGCAGCGTTAAGAAGTTGAACTTCAGCCACATTACCATCGTTTTGGTTCACAATTGCTATAAGTTATATCTAGAACACTAACAGATTTAAGCTAGTAAGTAGAGTAGTGGGTTAAACCAACACTACAACTGTCCTGGCCCCACGGTGGACGCCAAACTGTTTATCGGGAGAATGGACAATTGAATTTGTTATGAGGTCAAGGACACACGAATTGATTCAATTCATTAATTAGTTTTTTGGCAGATAGGTTTGTTAATAAACTAGCTTAATTAGAATAATAATTTAGTAAAATAAGCAAAGGAAACAATATAGCTCAGATTCGTGATGTTTCAGTCTTGTTCTGGAGACAACATAGTGTGACCAATTCAGATTCGGAGGCATTTAAGCTTAAGAACTAAGACTTAGCAAAGAATGTAAAATAATAGAAAGTTTGGAGCACAAGAATATCAGTGGATTGCTTCGTATTGTCAAAAATCCAACCCTTTGCAGGTAAGTGGAAACTACTATTTATAGCAACAAAGGTTATATCAGCCAATAGGAAAGCTCCACTCGAGCCATAAGACTGTCTAATGGAAAATGGAAATGCCCCACCTGAAAATACCGTTATGCATGCTAACTAATATTTCCCTGTAATTTGCATGGTCTAATTTGGATATATCGTATCTGCCTTTTTTCCTTTCATTCTCTCTTTGGGCGAAAAATCCCTTTATTCCTCCTCCTTGACTTCTGGCCACTGAGTTCTCGCCTTTTTCCTGAAAATGACCATCTGGTTGACCTGACGATGAAATGAGATCAAGTTAGCCAGACAGTAACTGATCGGTACTCAAGTGATGAATGGTGTGTTTTTCTCGATCCTCTATGCCAGATTGTCTTCCGGCTTCATCCTGATGTTAGGTGTCGTCTTTGTAAGCAGTCACATGTACAAGGTAGTTTTCCCCAATACAAATAGTGGGATTGGGATATGGTGGATAATAATCAAGTAATCATTGGATTATTTGTGATAACATTGATTATTAGGTTAATCTAAATTTGGATGTAAAGTGAATCTAAACATTGCTTTATTCTTGATGAAAATTTGGTGTCAAGAGATATGCTTAGTTTATTAGGTCACTTTATCTGACATACTATTGGTTTATTATCATATGAGATTAAATATAATGACATACCATCAATTATATCCGCCATCAAATAGTGTACAGTTATTAGAGGAAATTAATATGATGTATACTAAAATCTTAGATAGACGAATATAGTAAGCACAATTTTAGATTCCTCTTCTAACTTATCATTTCAAATTCATACAACAAAGTACAAATATTATTAAAAGAAACTGGGAGATGGTACACAAAACAAGTAGTAATAGACTAATAGCTTAAAGAAATTGACATTTAGGTGATCTACGACATTTATTTCTTATTTTGAAAAATGAGTGATGTAATAAATGTATTGCTGATATGTGTATAACCTCAGTTGTTTTGTCACTTCGGTACAAAATGATAACATAGGCCATCCCTTTTCACTTTCCTCTCTTCTCTTACAACCCCCTCTTTGCTTGAACCAAGAGTAGCGGTAATCTAGGTGCACTCAATTGTGATGACACCTTGGCTCTATAGATTAAGAGATACAACTGATATATATTATTATGTTGGATTAGTTTCATTTGTCTTTCCAAGTATGTGATTCCACCCAATCGCCAGTCGCAATGTAAATTCCTTATTTTGTATTGTATATATTGATCCAAGGAAATCATGTGAGATCTTTTGCATTGTTGCAGGTGTACATATGGAATCGCCGAGGTTCAAAGCCTATTGAGATCTTGTGTGGCCATTCAATGACTGTGAACTCTGTGAGCTGGAATCCTAAAAGGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAACTATCCGCATATGGGGGCCTGATGTTCGAAGTAAATAGTAACGAGCCTGGTATATGCAAATGGATTTTTCTCAATTGCTAGTTCCATTTGCCATGTAAATCTGTTTCTTCTCTACAAATTTTGGCATGTCTATTCCCCCCATGTAAATTGGCATAGCTAGAAAAATAATTTTGTCTCCGCGTGTATGTACAACGCCAACGTTGTGGAGTGTAAGTAAAAACTCTTTCCCTAAAGTTTGATTGAAATTAGTAAAAGAAAGTAAAACTTTCTT</genome_strand>
        <mrna_strand>CCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAACCCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGGGGGTGGCTTAGCCCCATGAAGTTTGAAGGTCCCAGACAACATAAGTATGTGATACGCTCCTGTTTTGGGGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATAGGGAATCGCCGGGGTACAAAGCCTATTGAGATTTTGTGGGGCCATTCAATGACTGTGAACTTTGTGGGCGGGAATCCTAAAAGGCCTCAAATGCTAGTTTCAGCAAGTGATGATCAAACTATCCGCATATGGGGGCCTGATGTTCGAAGTAAATAGTAACG-GGCTGGTATATGCAAAGGGATTTTTCTCAATTGCTAGTTCCATTTGCCAGGTAAATTTGTTTTTTTTCTACAAATTTTGGCATGTTTATTCCCCCCATGTAAATTGGCATAGCTAGAAAAATAATTTTGTTTCCGGGGGTATGTACAACCCCAACGTTGGGGGGGGTAAGTAAAAACTTTTTCCCTAAAGTTTGATTGAAATTAGTAAAAGAAAGTAAAACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268559" ref_strand="+" ref_description="SGN-E268559 [cLEI-13-O24]">
      <seq>ggatgccaaaggttctagatcttgctattacacctgatggagaaaaacttatcagtatattttctgacaaagatatccgaatattgaatgtggggactggtggtgaacatgtgatttcagaggagtatccaatcacatccctttcactatcaggggatggtaaattcttcatagtaaaccttaatagtcaagagattcatatgtgggatattgcaggcgagtggcttagccccatgaagtttgaaggtcacagacaacataagtatgtgatacgctcctgttttggaggattggacagcacttttatcgccagtggtagtgaagattcaaaggtgtacatatggaatcgccgaggtacaaagcctattgagatcttgtgtggccattcaatgactgtgaactctgtgagctggaatcctaaaaagcctcaaatgctagcttcagcaagtgatgatcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="68421" stop="62626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68121" g_stop="67790" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67789" i_stop="63054" i_length="4736">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63053" g_stop="62926" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="460" r_length="128" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E268559" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68121" e_stop="67790"/>
          <exon e_start="63053" e_stop="62926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCAAAGGTTCTAGATCTTGCCATTACACCTGATGGAGAAAAACTTATCAGTATATTTTCTGACAAAGATATCCGAATATTGAATGTGGGGACAGGTGGTGAACATGTGATTTCAGAGGAGTATCCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGCCCCATGAAGTTTGAAGGTCACAGACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAGGTATGCTCGTTCTTTAATGCCCTTCCCTTAACTCCCCACCCTTCCAAAAAAAATCATAATAAGCATGAGATTCAAGAAGTGGTTGAGAACCCTGAGGTCTCAAGTTCAAAACTCAATGGAGACAAAGGAACACTAGGCGATTCTTCCCATCTGTCCTAGCCTTGGCGGACAGGAATTATCCGGAACCTATCGCCGGTGGGAGGTGGAAGGTATCCCTTAGTTAGGAGCTTTGTTCTCCTTTGAATGACTTCATAATATGGGTCCCTTTAAGAAAACGGTGCTTATGAATTAGGACGGCTCTTGTTCATTTTGGCACAATTTATCAGGGAAATTGGATCCTGTGGTGTCCCTATAAAAGGTGCTTGAATTGACTCTTTAGTATCATAATTAGTTTTAATCTGCTAATTTGAATACTAAGATCAATTAGGGTTCTTAGAGCTCTTTTACAAGTTTGGGAATTTTATTTTCGAATTTCACATGTCTTTCAATTTTTGTCTTTAATCTTAATAATTCGTTTCCTTATTATTTTCTTGTTTATTCTGATAACCCGATTCTTATCACCCTCCTTTTTGAAAAATCAACGAACATATTTATCTGCTCGAGCTCTTCCGTCATTGTCTTGGTGGCATTCATGTCATCTGAGCCATAGAAGGATGTTGGTACTTAATACCTGTCTTGATTTGTCTCCTCCACTTCTGGTAATTCATCCTCCATGTTGGTTACTCAGATTTCTATAATTGTTATTTGTCACCTCTTTTGCAGCACCTGTTTGCTCTTTGGTCAGTGACACCGCGAGCATCTTGCTTGCTGCTAACAGATCTTCTTTGATTTGTTTAACTCCTTTCGGTGTTAATTTCAACACTCGGTGGTATGTGGAGGGTACAACACTCATGGCGTAAACCCATGGCATCCCAAGTATAATATTGTACCCCATTTTTCCATTAATTTTTCGAATTAAGTTTTCCGTTAATAGCCTTATATCGGCTCGGTCATCTCGCTGGACATGTTAAATCTAGCCAGGAGCTTTGTAGACGGGATCACTTTGTCTACCAATTTCATTAGCTCTAAGCCCCTCATGTGGACAATATTTGCTGAACTACCTGGATCAATCAACACGCTTAACCATATAAATTAGCTATACCTAAAGAAACTACCTAAGCACTCGTTTGCGGGTACTCCAAGTTGTTCAAATCCTGGTCATGGAAAGAAATTGTTTCTGAATTTGGTATCTCCCGATATCTCTTCTCAAAGCTAAACAATAGCTTAGCCTTTTTCGTCATCGAAACTGTTACTCTGCTGACCTCTCCCCCCGATTATCATATTTATCATATGTCAAGGTGAGTCGAGCTTACTGGGTTGTATGTTTCCTTCTTTCTCCCTCCTGTAGTTGACCTTGGCTCGATTGCTCAAAAACTCTCTTGGATAGTCGTTCCTGAGGAGTATGGCCATCTCCAAGGGCCACCTGCTCTTGGAGATGCCTATGATCCCCCGTTTTATGACTGTGTGTTCCATGAAATTCGCATCCCAGGTTTGGGTCCCTAGGTCCCAGGTTTTGAAAAACGAGCCGCTTTGATGTTTCTCATGGCCGAAGCCAACTGAATAGGACTGATATTGAAACCATACTCCAAGAGTCTCAGGACATTCAACTGCATGGATCACACTTGAGGCTCCAACCACCTCTTGGTTTTGCAGTCTGGTATGGCCTTGATCCCTCCCATTCTGCTTGTCTAACCAAGATCTATCCAGAGGCTGAAAGTTATGGGACGAACTTGGCCTCATTTCGAATGGGTATGGAGGGTATCAACTCTTTGCGAGTTCTGAATCCAATTTCTGTACCTTAAGCATTTTGTAGTGAGATCGAAAAAGATTGTCTTCAACTCAAATTTTTGACTCTTACCGATTATGAACAACAACTCAATTCATATGCTCAAACTCTGTGAGATTTTATTTTACCTTCAGTGAGGTGATCGAGCTCTCAAGGTTCAAACCCTTTGTAAAAGCCTCTGCATCCCAATCATCTAGAACCATCGGCAGCAAGATCCTTTCTCTCTAGAAGCTTGTCATGAAGTCCCTGAGTAGCTTGGAGTCAACCTGCTCGATTTTGAAGATGTCTGCTCTTCTGGGCTGCACCTTCCTAGCTCCAGCATATGCTTTTATAAAATAATCTGCAAGCATATTAAAAAAACTAATAGAATCTTCAGCTAATGAAGAGTACCATACAAGCATTCCTCCGGATAGAATTTTTTCGAAACTTCTTGACCAAAACTGATTCAACCTTGGCTTTAGAAAAGTTGTTCCCCTTAACGACTGTAATGTAAACCAGAATTTGCTCTTGCGGGTCTGTAGTTCCATCATTTTGGGATATCCGACAACCGGAACCTATTCGAAATAAGTTCCGATGCTGAGCTGGGCTTATAAGGCAATTGAGTGTAACTCTAAGAGTCTGGCCCCCTTCAAGTTCGGAGGTGCTCTTGGAATATGGTTCATTCGGTTGTGCAGCTCCTTTAGGCCCAGCCTGAGTTCTTTCCTGATTCACTCCACCATCGACATTCCAATGTCAGACCCGACCCCCATCTGTCAGCCCTGCATTCTTCCAAATGGGCCGCAGTTGAGACCGATTCCTGAATTCCTTGCGATGTTGGTGTTTCTGGTGGTGTTTGACCACTTCTTCAGGCGTTGTGAGAAGCCATTGTGGTCACAATCTTATGGAGCTCCATTACCCTTTTGTCCTGTGCGGTCATGTGGTCCATTATGGACCTGTGTTGAGCAGTCGGAATCTGTAAGAGTCTCCTTAAGGTCGTCCATGTCAGTCCTATCCTCGTCCCGTTGATGATTCACTTCTTTGGGGTTCTTTCTCCCATGCCTCTTCGCTAATTCATGTTCGTCAGATTAATATCTTCTAGATCAACCTCTACTGCATCAGCAGCTGTTAACACTCTTCTTAAAGACCTGTCCAGTCTTGGGCAGCGTTAAGAAGTTGAACTTCAGCCACATTACCATCGTTTTGGTTCACAATTGCTATAAGTTATATCTAGAACACTAACAGATTTAAGCTAGTAAGTAGAGTAGTGGGTTAAACCAACACTACAACTGTCCTGGCCCCACGGTGGACGCCAAACTGTTTATCGGGAGAATGGACAATTGAATTTGTTATGAGGTCAAGGACACACGAATTGATTCAATTCATTAATTAGTTTTTTGGCAGATAGGTTTGTTAATAAACTAGCTTAATTAGAATAATAATTTAGTAAAATAAGCAAAGGAAACAATATAGCTCAGATTCGTGATGTTTCAGTCTTGTTCTGGAGACAACATAGTGTGACCAATTCAGATTCGGAGGCATTTAAGCTTAAGAACTAAGACTTAGCAAAGAATGTAAAATAATAGAAAGTTTGGAGCACAAGAATATCAGTGGATTGCTTCGTATTGTCAAAAATCCAACCCTTTGCAGGTAAGTGGAAACTACTATTTATAGCAACAAAGGTTATATCAGCCAATAGGAAAGCTCCACTCGAGCCATAAGACTGTCTAATGGAAAATGGAAATGCCCCACCTGAAAATACCGTTATGCATGCTAACTAATATTTCCCTGTAATTTGCATGGTCTAATTTGGATATATCGTATCTGCCTTTTTTCCTTTCATTCTCTCTTTGGGCGAAAAATCCCTTTATTCCTCCTCCTTGACTTCTGGCCACTGAGTTCTCGCCTTTTTCCTGAAAATGACCATCTGGTTGACCTGACGATGAAATGAGATCAAGTTAGCCAGACAGTAACTGATCGGTACTCAAGTGATGAATGGTGTGTTTTTCTCGATCCTCTATGCCAGATTGTCTTCCGGCTTCATCCTGATGTTAGGTGTCGTCTTTGTAAGCAGTCACATGTACAAGGTAGTTTTCCCCAATACAAATAGTGGGATTGGGATATGGTGGATAATAATCAAGTAATCATTGGATTATTTGTGATAACATTGATTATTAGGTTAATCTAAATTTGGATGTAAAGTGAATCTAAACATTGCTTTATTCTTGATGAAAATTTGGTGTCAAGAGATATGCTTAGTTTATTAGGTCACTTTATCTGACATACTATTGGTTTATTATCATATGAGATTAAATATAATGACATACCATCAATTATATCCGCCATCAAATAGTGTACAGTTATTAGAGGAAATTAATATGATGTATACTAAAATCTTAGATAGACGAATATAGTAAGCACAATTTTAGATTCCTCTTCTAACTTATCATTTCAAATTCATACAACAAAGTACAAATATTATTAAAAGAAACTGGGAGATGGTACACAAAACAAGTAGTAATAGACTAATAGCTTAAAGAAATTGACATTTAGGTGATCTACGACATTTATTTCTTATTTTGAAAAATGAGTGATGTAATAAATGTATTGCTGATATGTGTATAACCTCAGTTGTTTTGTCACTTCGGTACAAAATGATAACATAGGCCATCCCTTTTCACTTTCCTCTCTTCTCTTACAACCCCCTCTTTGCTTGAACCAAGAGTAGCGGTAATCTAGGTGCACTCAATTGTGATGACACCTTGGCTCTATAGATTAAGAGATACAACTGATATATATTATTATGTTGGATTAGTTTCATTTGTCTTTCCAAGTATGTGATTCCACCCAATCGCCAGTCGCAATGTAAATTCCTTATTTTGTATTGTATATATTGATCCAAGGAAATCATGTGAGATCTTTTGCATTGTTGCAGGTGTACATATGGAATCGCCGAGGTTCAAAGCCTATTGAGATCTTGTGTGGCCATTCAATGACTGTGAACTCTGTGAGCTGGAATCCTAAAAGGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAAC</genome_strand>
        <mrna_strand>GGATGCCAAAGGTTCTAGATCTTGCTATTACACCTGATGGAGAAAAACTTATCAGTATATTTTCTGACAAAGATATCCGAATATTGAATGTGGGGACTGGTGGTGAACATGTGATTTCAGAGGAGTATCCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGCCCCATGAAGTTTGAAGGTCACAGACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATATGGAATCGCCGAGGTACAAAGCCTATTGAGATCTTGTGTGGCCATTCAATGACTGTGAACTCTGTGAGCTGGAATCCTAAAAAGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570315" ref_strand="+" ref_description="SGN-E570315 [14880]">
      <seq>gtattataacacaatagtacatgggcagtactaatccttatatacagatgaactccgaaaactccactggttctaaatctaaatcgagtctaaaacatcaattatagagacagtttcatttgagtataattgattgcaccaaaaacataacaacaaaatgcagttgagtttaactttctgcatactattctctatgctctcaaaacacctaggtatttctctctttccaggttgcccaccagattgaagcaggggataattctccatctcgttgtgtctttagctagcactcctgcctcctcccaactttttagggcttcagtaattctcctaggcattgcccaggatatgcctttggagactcaagaatagcctccataactgttgagtaaatttgcagtgtaggaaaaagatggttaacagtttctgatgtttctccacaaagaaaacacctagaacataaggttatcccccttttcataacattatcctgtgtcaaagctgcttccttagctagcaggcatataaaacatgagactttataaggaattttgcctttccaaatttgtctccatggccaggtaggaatctgttgacttggttggtccatcaactgtaagctggcactactttaaatatacctttggtgcttccttttccacctacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="73724" stop="72497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73424" g_stop="72812" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E570315" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73424" e_stop="72812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATAACACAATTGTACATGTGCAGCACTAAACCTTATATACAGATGAACT-CAAAAACTCCACT-GTTCTAAATCTAAATTGAGTCTAAAACATCAATTATAGAGACAGTTTCATTTGAGTATAATTGATTGCACCAAAAACATAACAACAAAATGCAGTTGAGTTTAACTTTCTGCATACTATTCTCTATGCTCTCAAAACACCTA-GAATTTCTCTCTTTCCAGGTTGCCCACCAGATTGAAGCA-GGGATAATTCTCCATCTCGTTCTGTCTTTAGCTAGCACTCCTGCCTCCTCTCAACTTTTTAAGGCTTCAGTAATTCTCCTAGGCATAGCCCAGGATATG-CTTT-GCGACTCAAGAATACCCTCCATAACTGTTGAGTAAATTTGCAGTGTA-GAAAAAGATGGTTAACAGTTTCTGATGTTTCTCCACAAAGAAGACACCTAGAACACAAGGTTATCTCCCTTTTCATAACATTATCCTGTGTCAAAGTTGCTTCCTTAGCTAGCAGCGGGCAGCCATATAAAACATGAGACTTTATAAGGAATTCTGCCTTTCCAAGTTTGTCTCCATGGCCAGGTAGGAATCTGTTGACTTGGTTGCTCCATCAA</genome_strand>
        <mrna_strand>GTATTATAACACAATAGTACATGGGCAGTACTAATCCTTATATACAGATGAACTCCGAAAACTCCACTGGTTCTAAATCTAAATCGAGTCTAAAACATCAATTATAGAGACAGTTTCATTTGAGTATAATTGATTGCACCAAAAACATAACAACAAAATGCAGTTGAGTTTAACTTTCTGCATACTATTCTCTATGCTCTCAAAACACCTAGGTATTTCTCTCTTTCCAGGTTGCCCACCAGATTGAAGCAGGGGATAATTCTCCATCTCGTTGTGTCTTTAGCTAGCACTCCTGCCTCCTCCCAACTTTTTAGGGCTTCAGTAATTCTCCTAGGCATTGCCCAGGATATGCCTTTGGAGACTCAAGAATAGCCTCCATAACTGTTGAGTAAATTTGCAGTGTAGGAAAAAGATGGTTAACAGTTTCTGATGTTTCTCCACAAAGAAAACACCTAGAACATAAGGTTATCCCCCTTTTCATAACATTATCCTGTGTCAAAGCTGCTTCCTTAGCTAGCA----G--G-CATATAAAACATGAGACTTTATAAGGAATTTTGCCTTTCCAAATTTGTCTCCATGGCCAGGTAGGAATCTGTTGACTTGGTTGGTCCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611940" ref_strand="+" ref_description="SGN-E611940 [61697]">
      <seq>ccaaggtaaagtgtttctcctggttggttgccagaagagcatgctccactcatgagaaattgaaaaggaggggtttctatattgcttcttggtgctctctctgtaatgagactgaggaaaccaacaaccatttgttcctccattgcaaagtgacagcacaattgtggaacctttttttgggactaacacatacagaatggattatgcctgagcatacagcagatctacttagttgctggatcagcagaggggggagaaaatctaagaaaaagtggtggagtataataccatcatgcatttggtggtgtatttgggaagaaagaaatagcagatgctatgataacaaagctaattcaatagagaaagtcaaatggaactgcttgactactttttatttttggtgtaaagaggaagggatagaagaagctgcacaaattttggattttataggcactttgtaatctatttgccttttttgttttttctcttgttggaaaccaatttttggaggtctccagcatatccttaatgctgatgaatacaaccattatcttttatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="75211" stop="74085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74908" g_stop="74387" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="564" r_length="516" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E611940" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74908" e_stop="74387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAAAAATTGAAAGGGAGGGGTTTCTATATTGCTTCTTGGTGCTCTCACTGTAATGAGACTGAGGAAACCAACAACCATCTGTTCCTCCATTGCAAAGTGACAACACAATTGTGGAACCTTTTTTTGGGACTAACACATACAGAATGGATTATGAGAATGGATTATGCCTGGACATACAGCAGATCTACTTAGTTGGATCAGCAGAGGGGGGAGAAAATCTAAGAAAAAGTGGCGGAGCATAATAACATCATGCATTTGGTGGTGTATTTGGAAAGAAAAAAATAGCAGATGCTATGATAACAAAGCAAATTTAATAGAG--AGTCAAATGGAACTGCTTGACTACTTTTTATTTTTGGTGTAAAGAGGAATGGATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCTCTTTGTAATCTATTAGCC-TTTTT-TTTTTTCTCTTGTTGGAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGCTGATGAATACACAACATTATC-TTTGTCAAAAA</genome_strand>
        <mrna_strand>CTCATGAGAAATTGAAAAGGAGGGGTTTCTATATTGCTTCTTGGTGCTCTCTCTGTAATGAGACTGAGGAAACCAACAACCATTTGTTCCTCCATTGCAAAGTGACAGCACAATTGTGGAACCTTTTTTTGGGACTAACACATACAGAATGGATTAT--GCCT-GAGCAT-ACAGCAGAT-C--TA-CT-TAGTT-GCTGGATCAGCAGAGGGGGGAGAAAATCTAAGAAAAAGTGGTGGAGTATAATACCATCATGCATTTGGTGGTGTATTTGGGAAGAAAGAAATAGCAGATGCTATGATAACAAAGCTAATTCAATAGAGAAAGTCAAATGGAACTGCTTGACTACTTTTTATTTTTGGTGTAAAGAGGAAGGGATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCACTTTGTAATCTATTTGCCTTTTTTGTTTTTTCTCTTGTTGGAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGCTGATGAATACA-ACCATTATCTTTTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727395" ref_strand="+" ref_description="SGN-E727395 [LA14CC09]">
      <seq>cgctaattgggggtttgaatctttttctctttgggagtttttagttgttcagaagtggaaaggaggcatctttagaatgtaactggtgttggggttcttgaatttgcatacagatacaggtatggagacttcattggttaatcttgggtcgaaaaagctaataaagaagcatgaatttgttagggtcatcattcaatgtctttattctttaggctacagaaagtctgctgtgtgtttggaatcagaatctgggattagctataaatctaatgaatttgagacccttgagtcttatattcgtgatgctaattgggatgcatgtattgaaacccttaatagacttaatggcttgacaaatgaaacgagagcttcagctttatttcttgttcttaaacagtggtttttagagtatttgaatcttggggaagattctttagctttggagattttacagaaaaaaatgtctggtttggaagtggggagggataaggttcataggcttgcttttggattgctctctttgaaagagttggggttggacaaggaagatcctaatggtatctatgaattccgaaaagaattgctgactgaactcgaaaaagtactgccaccacctattacagtgccagaacggaggttagattacttggttgaaatggcagtatggtcacaactagagaaatgtgtgtttcataattcagttgatgcaattacgctctacgaagatcaccattgtgactccagtcagtttccttcaaagaccattcagtggtcatttgttctccaaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="81205" stop="79317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80905" g_stop="80138" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80137" i_stop="79641" i_length="497">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79640" g_stop="79617" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="793" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E727395" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80905" e_stop="80138"/>
          <exon e_start="79640" e_stop="79617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAC-AATTGGGGGTTTGAATCTTTTTCTCTTTGGGAGTTTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTGCCAGAACGGAGGTTAGATTACTTGGTTGAAATGGCAGTATGGTCACAACTAGAGAAATGTGTGTTTCATAATTCAGTTGATGCAATTACGCTCTACGAAGATCACCATTGTGACTCCAGTCAGTTTCCTTCAAAGACCATTCAGGTGGATAATCTTTAAACCATATTTATAGCTTTCTAGCTTGAGCATTGAAAAGACCATGTAATGCCTTAGCTTTTAAAGATTGCATCTGGTCTTACAAGCCTAGTGTTATTTAAATGATTACTTTCAGTTTGATCCATTAGTTTTAGCTCAATAGGATATCAGATTATCACGTTTATTGACATACACTTTAATTGGTGCTCAACATTTATACCTGGAAGTTTACTTTCAATAGCTCAAAACTGGTTCCGCTACTACCTTTTTGCTAATCATAGAGAATTCACGATGCTGAATACCTAGTATGTCTTTCATTCAGGGATGTTCACACTTTTGGACCAAATTGAAAAGGTAAGCAGGACAATTATATGGGATATTTCCCAAGTTCACTAGGAATTGATCTGGTTTGCCTTTTTTATGAGGTCCTTTCTTTTTTGACCTGAATGGGCTAAGACAGTGTATCAAAGAATGCATATGAGCTCATCATAATTTTTTTTTTCAAGTGGTCATTTGTTCTCCAGATAAGT</genome_strand>
        <mrna_strand>CGCTAATTGGGGGTTTGAATCTTTTTCTCTTTGGGAGTTTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTGCCAGAACGGAGGTTAGATTACTTGGTTGAAATGGCAGTATGGTCACAACTAGAGAAATGTGTGTTTCATAATTCAGTTGATGCAATTACGCTCTACGAAGATCACCATTGTGACTCCAGTCAGTTTCCTTCAAAGACCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCATTTGTTCTCCAAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456013" ref_strand="+" ref_description="SGN-E456013 [cSTS-28-C18]">
      <seq>ctctttgggagttttcagctggtcagaagtggaaaggaggcatctttagaatgtaactggtgttgaggggttcttgaatttgcatacaggtatggagactccattggctaatcttgggtcgaaaaagctaataaagaagcatgaatttgttagggtcatcattcaatgtctatattctttaggttacagaaagtctgctgtgagtttggaatcagaatctgggattagctacaaatctgatgaatttgagactctcgagtcttgtattcgtgatgctaattgggatgcatgtattgaaacccttaatagacttaatggcttgacaaatgaaacgagagcttcagctttgtttcttgttcttaaacagtggtttttagagtatttgaatcttggggaagattctttagctttggagattttacagaaaaaaatgtctggtttagaagtggggaaagataaggttcatacgcttgcttttggattgctttccttgaaagacttggggttggataaggaagatcctgatggtatttataacttcagaaaaaaattgctgactgaacttgaaaaagtactgccaccacccattacagtgccggaccgaaggttagagtacttggttgaaatggcagtatggtcacagatagataaatgtgtgtttcataattcagttgatgccgttacgctctatgaagatcaccaatgtgatgccagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="81180" stop="79859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80880" g_stop="80160" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E456013" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80880" e_stop="80160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGGGAGTTTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTT--GGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTGCCAGAACGGAGGTTAGATTACTTGGTTGAAATGGCAGTATGGTCACAACTAGAGAAATGTGTGTTTCATAATTCAGTTGATGCAATTACGCTCTACGAAGATCACCATTGTGACTCCAGTCA</genome_strand>
        <mrna_strand>CTCTTTGGGAGTTTTCAGCTGGTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGAGGGGTTCTTGAATTTGCATACA------GGTATGGAGACTCCATTGGCTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTATATTCTTTAGGTTACAGAAAGTCTGCTGTGAGTTTGGAATCAGAATCTGGGATTAGCTACAAATCTGATGAATTTGAGACTCTCGAGTCTTGTATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTGTTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTAGAAGTGGGGAAAGATAAGGTTCATACGCTTGCTTTTGGATTGCTTTCCTTGAAAGACTTGGGGTTGGATAAGGAAGATCCTGATGGTATTTATAACTTCAGAAAAAAATTGCTGACTGAACTTGAAAAAGTACTGCCACCACCCATTACAGTGCCGGACCGAAGGTTAGAGTACTTGGTTGAAATGGCAGTATGGTCACAGATAGATAAATGTGTGTTTCATAATTCAGTTGATGCCGTTACGCTCTATGAAGATCACCAATGTGATGCCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415598" ref_strand="+" ref_description="SGN-E415598 [STM-21-J15]">
      <seq>tttcagctggtcagaagtggaaaggaggcatctttagaatgtaactggtgttgaggggttcttgaatttgcatacaggtatggagactccattggctaatcttgggtcgaaaaagctaataaagaagcatgaatttgttagggtcatcattcaatgtctatattctttaggttacagaaagtctgctgtgagtttggaatcagaatctgggattagctacaaatctgatgaatttgagactctcgagtcttgtattcgtgatgctaattgggatgcatgtattgaaacccttaatagacttaatggcttgacaaatgaaacgagagcttcagctttgtttcttgttcttaaacagtggtttttagagtatttgaatcttggggaagattctttagctttggagattttacagaaaaaaatgtctggtttagaagtggggaaagataaggttcatacgcttgcttttggattgctttccttgaaagacttggggttggataaggaagatcctgatggtatctataacttcagaaaaaaattgctgactgaacttgaaaaagtactgccaccacccattacagtgccgggaccgaagttagagtacttggttgaaatggcagtatggtcacagatagataaatgtgtgtttcataattcagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="81168" stop="79900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80868" g_stop="80200" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E415598" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80868" e_stop="80200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTT--GGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTGCCAGAACGGAGGTTAGATTACTTGGTTGAAATGGCAGTATGGTCACAACTAGAGAAATGTGTGTTTCATAATTCAGTTGATG</genome_strand>
        <mrna_strand>TTTCAGCTGGTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGAGGGGTTCTTGAATTTG----C--ATACAGGTATGGAGACTCCATTGGCTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTATATTCTTTAGGTTACAGAAAGTCTGCTGTGAGTTTGGAATCAGAATCTGGGATTAGCTACAAATCTGATGAATTTGAGACTCTCGAGTCTTGTATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTGTTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTAGAAGTGGGGAAAGATAAGGTTCATACGCTTGCTTTTGGATTGCTTTCCTTGAAAGACTTGGGGTTGGATAAGGAAGATCCTGATGGTATCTATAACTTCAGAAAAAAATTGCTGACTGAACTTGAAAAAGTACTGCCACCACCCATTACAGTGCCGGGACCGAAGTTAGAGTACTTGGTTGAAATGGCAGTATGGTCACAGATAGATAAATGTGTGTTTCATAATTCAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437306" ref_strand="+" ref_description="SGN-E437306 [cSTA-3-I4]">
      <seq>tggaaaggaggcatctttagaatgtaactggtgttgaggggttcttgaatttgcatacaggtatggagactccattggctaatcttgggtcgaaaaagctaataaagaagcatgaatttgttagggtcatcattcaatgtctatattctttaggttacagaaagtctgctgtgagtttggaatcagaatctgggattagctacaaatctgatgaatttgagactctcgagtcttgtattcgtgatgctaattgggatgcatgtattgaaacccttaatagacttaatggcttgacaaatgaaacgagagcttcagctttgtttcttgttcttaaacagtggtttttagagtatttgaatcttggggaagattctttagctttggagattttacagaaaaaaatgtctggtttagaagtggggaaagataaggttcatacgcttgcttttggattgctttccttgaaagacttggggttggataaggaagatcctgatggtatctataacttcagaaaaaaattgctgactgaacttgaaaaagtactgccaccacccattacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="81151" stop="79982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80851" g_stop="80282" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E437306" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80851" e_stop="80282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTT--GGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTG</genome_strand>
        <mrna_strand>TGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGAGGGGTTCTTGAATTTG----C--ATACAGGTATGGAGACTCCATTGGCTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTATATTCTTTAGGTTACAGAAAGTCTGCTGTGAGTTTGGAATCAGAATCTGGGATTAGCTACAAATCTGATGAATTTGAGACTCTCGAGTCTTGTATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTGTTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTAGAAGTGGGGAAAGATAAGGTTCATACGCTTGCTTTTGGATTGCTTTCCTTGAAAGACTTGGGGTTGGATAAGGAAGATCCTGATGGTATCTATAACTTCAGAAAAAAATTGCTGACTGAACTTGAAAAAGTACTGCCACCACCCATTACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314912" ref_strand="+" ref_description="SGN-E314912 [cTOA-31-E10]">
      <seq>ttcagcaaaggcttctctcttgatgccaccgctgcaatgaagttaacaccactttttctatacaaagacaagaaacaagaattcagtggcatgaatttctttgtttaactttactgcttcacttcacaattgggggtttcaatctttttcactttgggagttttcagttgttcagaagtggaaaggaggcatctttagaatgtaactggtgttggggttcttgaatttgcatacagatacaggtatggagactccattggttaatcttgggtcgaaaaagctaataaagaagcatgaatttgttagggtcatcattcaatgtctttattctttaggctacagaaagtctgctgtgtgtttggaatcagaatctgggattagctataaatctaatgaatttgagacccttgagtcttatattcgtgatgctaattgggatgcatgtattgaaacccttaatagacttaatggcttgacaaatgaaacgagagcttcagctttgtttcttgttcttaaacagtggtttttagagtatttgaatcttggggaagattctttagctttggagattttacagaaaaaaatgtctggtttggaagtggggagggataaggttcatangcttgcttttggattgctctctttgaaagagttggggttggacaaggaagatcctaatggtatctatgaattccgaaagaaatgctgactgaactcgaaaagtactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="81331" stop="79999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81031" g_stop="80299" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E314912" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81031" e_stop="80299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAAAGGCTTCTCTCTTGATGCCACCGCTGCAATGAAGTTAACACCACTTTTTCTATACAAAGACAAGAAAACAAGAATTCAGTGGCATGAATTTTCTTTGTTTAACTTTACTGCTTCACTTCACAATTGGGGGTTTGAATCTTTTTCTCTTTGGGAGTTTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGC</genome_strand>
        <mrna_strand>TTCAGCAAAGGCTTCTCTCTTGATGCCACCGCTGCAATGAAGTTAACACCACTTTTTCTATACAAAGACAAGA-AACAAGAATTCAGTGGCATGAA-TTTCTTTGTTTAACTTTACTGCTTCACTTCACAATTGGGGGTTTCAATCTTTTTCACTTTGGGAGTTTTCAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTCCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTGTTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATANGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCG-AAAGAAATGCTGACTGAACTCG-AAAAGTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="89491" stop="90632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89791" g_stop="90332" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89791" e_stop="90332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATGCAATGTTTTCCAAAATTTAGAAGTAAATGGCGCACCTCTATCTGATATAATGGAAAGTGGAACTCCATACAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACTTTGACCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCATATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCTACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTATGAGCCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="89936" stop="91122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90236" g_stop="90822" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90236" e_stop="90822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="89936" stop="91122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90236" g_stop="90822" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90236" e_stop="90822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="89936" stop="91089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90236" g_stop="90789" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90236" e_stop="90789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="-" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="92642" stop="91382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92342" g_stop="91682" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92342" e_stop="91682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTGTATAGGAATTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAGATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTCGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGACGTGTTTCCTGTAAACCTTCCTGGTATGCCACCGGATAGGGATATTGATTTCTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCTTATAGGTTGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAACAAGGGCTTTATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="91742" stop="92672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92042" g_stop="92372" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92042" e_stop="92372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCTCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCGAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATCTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAATTCCTATACACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCACGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241789" ref_strand="+" ref_description="SGN-E241789 [cLEE-10-M7]">
      <seq>atgtctgatcttcaaggacatcaagacatgaatgagagagaatccagtccgagctaggaacaatagctcaccctgaaatctgacgtgatgaagactggttagagttgcggttgagttgaagacgacggtacgtttgctgcactccacaattaacaaaaagaaaacataaaagtaggggtcagtacaaacacgagtactgagtagatatcatcggccaactcagaatagagaacaatatatatcaaataataaaataaaatcaaccataacacttaacaggtgacaacaacaagtaccataaccattgggcacaacccaagaacatctatgaggactcaagcctccacaccatactcatttgggaaacaggttcattaaattgagtacattaacataattcaagattcattctttttactatcgtggtgtcggaacgtgatactccgatcccctaatgctacgtgtcggttcgtgacacccgatcccctaatactacgtgtcggttcgttacacccgatctcctaatactacgtgccgattcgtgacacccgatccattaatactatgtgtcggttcgtgacacccgatccattaatactacgtgtcggttcgtgacacccgatcccctaacctcattcttttagttcatcaagccttcttttataccaagacatcatcattaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0130D14-DqTIN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0130D14.1" temp_strand="+" temp_description="C09HBa0130D14.1  AC217143.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0130D14 upload_account_name:spain">
        <position start="86992" stop="95488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94332" g_stop="94830" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94831" i_stop="95005" i_length="175">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95006" g_stop="95189" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="686" r_length="184" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0130D14.1" gen_strand="+" ref_id="SGN-E241789" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0130D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94332" e_stop="94830"/>
          <exon e_start="95006" e_stop="95189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCGAACTTCAA-GACATCAAGACGCGAA-G-GAAAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGATGTGGTGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGATGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAAGGGTCAGTACAAGCACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAGCAATATATATCAGATAATAACATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGCACATCTATGAGGACTCAATCCTCCACACCATACTTATTTGTGAAA--GGTTCTTTAAGTTTTGAGTATATTAAGATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTAGGAACGTGACACTCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCACTAATACTACGTGTCGGTTCGTGACACCCGATCCCCCAATACTATGTGTCGGTTTGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCTGATCCCCTAATACTATGTGTCGGTTCATGACACCCGATTCCCTAATACTATGTGTCAATTCGTGACACCCGATCCCCTAATACTATGTGCCGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTTGGTTCGTGACACCCGATCCACTAATACTATGTGTCAGTTCGTGACACCCGATCCACTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAATAG</genome_strand>
        <mrna_strand>ATGTCTGATCTTCAAGGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGACGTGATGAAGACTGGTTAGAGTTGCGGTTGAGTTGAAGACGACGGTACGTTTGCTGCACTCCACAATTAACAAAAAGAAAACATAAAAGTAGGGGTCAGTACAAACACGAGTACTGAGTAGATATCATCGGCCAACTCAGAATAGAGAACAATATATATCAAATAATAAAATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGAACATCTATGAGGACTCAAGCCTCCACACCATACTCATTTGGGAAACAGGTTCATTAA--ATTGAGTACATTAACATAATTCAAGATTCATTCTTTTTACTATCGTGGTGTCGGAACGTGATACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCG...............................................................................................................................................................................GTTCGTTACACCCGATCTCCTAATACTACGTGCCGATTCGTGACACCCGATCCATTAATACTATGTGTCGGTTCGTGACACCCGATCCATTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGACATCATCATTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>163</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12" PGL_stop="342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12" e_stop="342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="12" e_stop="342" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12" stop="342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAA</gDNA_template>
            <first_frame> S  N  L  E  I  G  L  L  Q  N  F  Y  E  F  V  V  E  L  Q  V  H  F  E  F  L  L  S  C  K  Y  T  Q  C  T  K  H  S  V  P  C  L  I  I  *  L  G  F  I  R  Y  K  F  I  L  S  M  *  R  A  E  R  *  G  T  C  S  Y  F  V  D  *  Q  L  C  K  S  L  *  G  F  S  F  L  W  M  *  N  Y  G  K  E  G  N  Y  V  Y  L  L  T  K  *  S  I  F  L  S  F  V  K  G  </first_frame>
            <second_frame>  Q  I  W  K  L  V  F  S  K  T  S  M  N  L  S  W  S  C  K  S  I  L  S  S  Y  C  L  A  S  T  L  N  V  Q  N  T  P  F  R  V  *  *  Y  N  W  G  S  F  D  I  S  S  F  C  P  C  R  E  R  S  V  R  V  L  A  H  I  L  *  I  S  S  C  A  N  L  S  K  V  S  V  F  C  G  C  K  I  M  G  R  K  V  I  M  F  T  C  *  Q  N  E  A  S  F  C  H  L  L  K  E </second_frame>
            <third_frame>   K  S  G  N  W  S  S  P  K  L  L  *  I  C  R  G  V  A  S  P  F  *  V  P  I  V  L  Q  V  H  S  M  Y  K  T  L  R  S  V  F  D  N  I  T  G  V  H  S  I  *  V  H  F  V  H  V  E  S  G  A  L  G  Y  L  L  I  F  C  R  L  A  A  V  Q  I  S  L  R  F  Q  F  F  V  D  V  K  L  W  E  G  R  *  L  C  L  P  V  N  K  M  K  H  L  F  V  I  C  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6597" PGL_stop="1995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6597" e_stop="6462"/>
            <exon e_start="6325" e_stop="6189"/>
            <exon e_start="5746" e_stop="5700"/>
            <exon e_start="5575" e_stop="5250"/>
            <exon e_start="4497" e_stop="4415"/>
            <exon e_start="4332" e_stop="4257"/>
            <exon e_start="3026" e_stop="2869"/>
            <exon e_start="2642" e_stop="2481"/>
            <exon e_start="2391" e_stop="1995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6597" e_stop="6462" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6461" i_stop="6326" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6325" e_stop="6189" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5746" e_stop="5700" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5575" e_stop="5250" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4497" e_stop="4415" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4332" e_stop="4257" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.937" acc_prob="0.967">
            <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3026" e_stop="2869" e_length="158"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2642" e_stop="2481" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.942">
            <gDNA_exon_boundary e_start="2391" e_stop="1995" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6597" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6582" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6565" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6565" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6555" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6552" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6550" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6545" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6542" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6542" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6540" stop="6462"/>
              <exon start="6325" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2943"/>
            </gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E254839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6298" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6288" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6266" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6238" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6224" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6213" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6212" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6212" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5745" stop="5700"/>
              <exon start="5575" stop="5354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5571" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5553" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5491" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5440" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5434" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5350" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4487" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4426" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4422" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4318" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4283" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3006" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="1995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2895" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411816" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586513" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2629" stop="2481"/>
              <exon start="2391" stop="2090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2628" stop="2481"/>
              <exon start="2391" stop="2026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2627" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2622" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2583" stop="2481"/>
              <exon start="2391" stop="2026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2571" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2569" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2545" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2543" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2336" stop="2102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2313" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATAATTGAAGTTAGAGAGTCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGTGGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAG : CTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG : GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG : GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG : GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT : GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG : CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG : GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG : GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCTTTTCCAAAGTAG</gDNA_template>
            <first_frame> *  *  L  K  L  E  S  R  I  K  N  W  I  Y  L  *  S  H  P  Q  K  H  Y  F  Y  F  L  *  F  C  G  L  *  I  M  A  T  Q  G  Q  V  I  T  C  K   : A  A  V  A  W  E  P  N  K  P  L  V  I  E  D  V  Q  V  A  P  P  Q  A  G  E  V  R  V  K  V  L  Y  T  A  L  C  H  T  D  A  Y  T  W  S  G  K  :  D  P  E  G  L  F  P  C  V  L  G  H  E  A  A  G :   I  V  E  S  V  G  E  G  V  T  E  V  Q  P  G  D  H  V  I  P  C  Y  Q  A  E  C  R  E  C  K  F  C  K  S  G  K  T  N  L  C  G  K  V  R  A  A  T  G  V  G  V  M  M  N  D  R  K  S  R  F  S  I  N  G  K  P  I  Y  H  F  M  G  T  S  T  F  S  Q  Y  T  V  V  H  D  V  S  V  A  K  I  D  P  V  A  P  L  E  K  V  C  L  L  G  C  G  V  P  T   : G  L  G  A  V  W  N  T  A  K  V  E  P  G  S  I  V  A  V  F  G  L  G  T  V  G  L  A  :  V  A  E  G  A  K  A  A  G  A  S  R  I  I  G  I  D  I  D  S  K  K  F  D  R   : A  K  N  F  G  V  T  E  F  I  N  P  K  E  H  E  Q  P  I  Q  Q  V  I  V  D  L  T  D  G  G  V  D  Y  S  F  E  C  I  G  N  V  S  V  M  R  S  A  L  E  C  C  H  K  :  G  W  G  T  S  V  I  V  G  V  A  A  S  G  Q  E  I  S  T  R  P  F  Q  L  V  T  G  R  V  W  K  G  T  A  F  G  G  F  K  S  R  S  Q  V  P  S  L  V  D  K  Y  L  K  K  :  E  I  K  V  D  E  Y  I  T  H  N  M  T  L  A  D  I  N  K  A  F  D  L  M  H  D  G  D  C  L  R  V  V  L  D  M  F  V  *  M  K  S  V  G  S  L  C  C  L  L  S  V  F  V  L  F  L  R  D  Y  L  P  F  P  L  L  I  M  C  *  I  K  R  K  *  E  K  K  D  Q  D  D  R  *  T  L  F  K  W  M  V  V  Y  Y  L  F  K  *  N  V  L  T  L  K  A  K  T  I  I  T  G  F  R  V  W  H  K  P  L  P  C  L  H  K  W  N  P  P  F  S  K  V  </first_frame>
            <second_frame>  N  N  *  S  *  R  V  V  *  R  I  G  S  I  C  R  V  I  L  K  N  T  I  F  I  F  F  D  S  V  V  C  K  S  W  L  H  K  V  K  S  S  P  A  K  :  L  R  W  P  G  N  P  T  S  P  W  *  L  R  M  C  R  W  L  H  R  K  P  V  K  S  G  L  K  F  C  I  L  L  S  A  T  P  M  L  I  P  G  V  A  R :   I  L  R  V  S  S  H  V  F  L  V  M  R  L  R   : G  *  *  K  V  L  V  R  E  *  L  R  F  S  Q  E  T  M  L  Y  L  A  T  R  Q  N  A  E  N  A  S  S  A  N  Q  E  R  P  I  F  V  V  K  *  G  L  L  L  E  W  E  L  *  *  T  T  V  R  V  D  F  L  S  M  E  N  R  S  I  I  S  W  E  L  Q  P  S  V  S  T  L  L  S  M  M  L  V  L  Q  R  L  T  Q  *  L  L  W  R  K  S  A  F  L  D  V  V  F  Q  L  :  A  L  E  L  F  G  T  L  Q  K  L  N  Q  V  P  L  L  P  S  L  A  W  E  Q  L  V  L  L :   W  R  R  V  Q  K  L  L  V  L  H  E  L  L  E  L  I  L  T  A  K  S  L  I  E  :  P  K  I  L  V  *  L  N  S  L  I  P  R  S  M  S  N  P  F  S  K  S  L  W  I  L  L  M  V  V  L  I  T  V  L  S  A  *  E  M  S  L  L  *  G  L  L  *  S  V  V  T  R :   V  G  E  P  Q  *  L  *  V  L  L  L  L  V  R  R  Y  L  H  V  H  F  S  W  *  L  V  V  F  G  R  E  L  L  L  V  V  S  K  A  D  H  K  F  L  P  S  W  T  S  I  *  R  R :   K  S  R  W  M  N  T  S  L  I  T  *  H  L  R  T  *  T  K  L  S  T  *  C  M  T  G  T  A  S  V  L  S  W  I  C  L  Y  E  *  S  L  *  A  L  Y  V  A  Y  F  L  F  L  C  Y  F  S  E  T  I  Y  L  S  P  C  *  L  C  V  E  *  K  E  S  E  K  K  R  I  K  M  T  D  E  L  F  L  N  G  W  *  F  I  I  F  S  S  K  M  F  L  L  *  R  L  K  P  S  L  L  V  L  E  F  G  I  N  H  C  H  V  C  I  N  G  I  L  P  F  P  K  * </second_frame>
            <third_frame>   I  I  E  V  R  E  S  Y  K  E  L  D  L  F  V  E  S  S  S  K  T  L  F  L  F  S  L  I  L  W  S  V  N  H  G  Y  T  R  S  S  H  H  L  Q  S :   C  G  G  L  G  T  Q  Q  A  L  G  D  *  G  C  A  G  G  S  T  A  S  R  *  S  P  G  *  S  F  V  Y  C  S  L  P  H  R  C  L  Y  L  E  W  Q   : G  S  *  G  S  L  P  M  C  S  W  S  *  G  C  G  :  D  S  R  K  C  W  *  G  S  D  *  G  S  A  R  R  P  C  Y  T  L  L  P  G  R  M  Q  R  M  Q  V  L  Q  I  R  K  D  Q  S  L  W  *  S  K  G  C  Y  W  S  G  S  Y  D  E  R  P  *  E  S  I  F  Y  Q  W  K  T  D  L  S  F  H  G  N  F  N  L  Q  S  V  H  C  C  P  *  C  *  C  C  K  D  *  P  S  S  S  S  G  E  S  L  P  S  W  M  W  C  S  N  W :   P  W  S  C  L  E  H  C  K  S  *  T  R  F  H  C  C  R  L  W  P  G  N  S  W  S  C   : C  G  G  G  C  K  S  C  W  C  F  T  N  Y  W  N  *  Y  *  Q  Q  K  V  *  *  S :   Q  K  F  W  C  D  *  I  H  *  S  Q  G  A  *  A  T  H  S  A  S  H  C  G  S  Y  *  W  W  C  *  L  Q  F  *  V  H  R  K  C  L  C  Y  E  V  C  F  R  V  L  S  Q   : G  L  G  N  L  S  D  C  R  C  C  C  F  W  S  G  D  I  Y  T  S  I  S  A  G  D  W  S  C  L  E  G  N  C  F  W  W  F  Q  K  P  I  T  S  S  F  P  R  G  Q  V  F  K  E   : G  N  Q  G  G  *  I  H  H  S  *  H  D  T  C  G  H  K  Q  S  F  R  P  D  A  *  R  G  L  P  P  C  C  P  G  Y  V  C  M  N  E  V  C  R  L  F  M  L  L  T  F  C  F  C  A  I  S  Q  R  L  F  T  F  P  L  A  N  Y  V  L  N  K  K  K  V  R  K  K  G  S  R  *  Q  M  N  S  F  *  M  D  G  S  L  L  S  F  Q  V  K  C  S  Y  F  E  G  *  N  H  H  Y  W  F  *  S  L  A  *  T  I  A  M  F  A  *  M  E  S  S  L  F  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6498" stop="6462"/>
                    <exon start="6325" stop="6189"/>
                    <exon start="5746" stop="5700"/>
                    <exon start="5575" stop="5250"/>
                    <exon start="4497" stop="4415"/>
                    <exon start="4332" stop="4257"/>
                    <exon start="3026" stop="2869"/>
                    <exon start="2642" stop="2481"/>
                    <exon start="2391" stop="2275"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKAFDLMHDGDCLRVVLDMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6326" e_stop="6189"/>
            <exon e_start="5746" e_stop="5700"/>
            <exon e_start="5575" e_stop="5250"/>
            <exon e_start="4497" e_stop="4415"/>
            <exon e_start="4332" e_stop="4257"/>
            <exon e_start="3026" e_stop="2869"/>
            <exon e_start="2642" e_stop="2481"/>
            <exon e_start="2391" e_stop="1995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6326" e_stop="6189" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="6188" i_stop="5747" i_length="442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5746" e_stop="5700" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5699" i_stop="5576" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5575" e_stop="5250" e_length="326"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5249" i_stop="4498" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4497" e_stop="4415" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4414" i_stop="4333" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4332" e_stop="4257" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.967">
            <gDNA_intron_boundary i_start="4256" i_stop="3027" i_length="1230"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3026" e_stop="2869" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2868" i_stop="2643" i_length="226"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2642" e_stop="2481" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="2480" i_stop="2392" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="0.942">
            <gDNA_exon_boundary e_start="2391" e_stop="1995" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6326" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6310" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6310" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6307" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6307" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6307" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6303" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6298" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6288" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6266" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6238" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6224" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6213" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6212" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6212" stop="6189"/>
              <exon start="5746" stop="5700"/>
              <exon start="5575" stop="5250"/>
              <exon start="4497" stop="4453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5745" stop="5700"/>
              <exon start="5575" stop="5354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5571" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5553" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5491" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5440" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5434" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5350" stop="5250"/>
              <exon start="4497" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4487" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4426" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4422" stop="4415"/>
              <exon start="4332" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4318" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4295" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4283" stop="4257"/>
              <exon start="3026" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3006" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="1995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2936" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2895" stop="2869"/>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411816" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="2481"/>
              <exon start="2391" stop="2095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586513" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2629" stop="2481"/>
              <exon start="2391" stop="2090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411753" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2628" stop="2481"/>
              <exon start="2391" stop="2026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2627" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2622" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2583" stop="2481"/>
              <exon start="2391" stop="2026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2571" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2569" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2545" stop="2481"/>
              <exon start="2391" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2543" stop="2481"/>
              <exon start="2391" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2336" stop="2102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2313" stop="2097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGGTGATTGAGGATGTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGCAAG : GATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGG : GATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAGCCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTAAGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACTTCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGATGTGGTGTTCCAACTG : GCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTTGGTCTTGCT : GTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAG : CCAAAAATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG : GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG : GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCTTTTCCAAAGTAG</gDNA_template>
            <first_frame> A  A  V  A  W  E  P  N  K  P  L  V  I  E  D  V  Q  V  A  P  P  Q  A  G  E  V  R  V  K  V  L  Y  T  A  L  C  H  T  D  A  Y  T  W  S  G  K  :  D  P  E  G  L  F  P  C  V  L  G  H  E  A  A  G :   I  V  E  S  V  G  E  G  V  T  E  V  Q  P  G  D  H  V  I  P  C  Y  Q  A  E  C  R  E  C  K  F  C  K  S  G  K  T  N  L  C  G  K  V  R  A  A  T  G  V  G  V  M  M  N  D  R  K  S  R  F  S  I  N  G  K  P  I  Y  H  F  M  G  T  S  T  F  S  Q  Y  T  V  V  H  D  V  S  V  A  K  I  D  P  V  A  P  L  E  K  V  C  L  L  G  C  G  V  P  T   : G  L  G  A  V  W  N  T  A  K  V  E  P  G  S  I  V  A  V  F  G  L  G  T  V  G  L  A  :  V  A  E  G  A  K  A  A  G  A  S  R  I  I  G  I  D  I  D  S  K  K  F  D  R   : A  K  N  F  G  V  T  E  F  I  N  P  K  E  H  E  Q  P  I  Q  Q  V  I  V  D  L  T  D  G  G  V  D  Y  S  F  E  C  I  G  N  V  S  V  M  R  S  A  L  E  C  C  H  K  :  G  W  G  T  S  V  I  V  G  V  A  A  S  G  Q  E  I  S  T  R  P  F  Q  L  V  T  G  R  V  W  K  G  T  A  F  G  G  F  K  S  R  S  Q  V  P  S  L  V  D  K  Y  L  K  K  :  E  I  K  V  D  E  Y  I  T  H  N  M  T  L  A  D  I  N  K  A  F  D  L  M  H  D  G  D  C  L  R  V  V  L  D  M  F  V  *  M  K  S  V  G  S  L  C  C  L  L  S  V  F  V  L  F  L  R  D  Y  L  P  F  P  L  L  I  M  C  *  I  K  R  K  *  E  K  K  D  Q  D  D  R  *  T  L  F  K  W  M  V  V  Y  Y  L  F  K  *  N  V  L  T  L  K  A  K  T  I  I  T  G  F  R  V  W  H  K  P  L  P  C  L  H  K  W  N  P  P  F  S  K  V  </first_frame>
            <second_frame>  L  R  W  P  G  N  P  T  S  P  W  *  L  R  M  C  R  W  L  H  R  K  P  V  K  S  G  L  K  F  C  I  L  L  S  A  T  P  M  L  I  P  G  V  A  R :   I  L  R  V  S  S  H  V  F  L  V  M  R  L  R   : G  *  *  K  V  L  V  R  E  *  L  R  F  S  Q  E  T  M  L  Y  L  A  T  R  Q  N  A  E  N  A  S  S  A  N  Q  E  R  P  I  F  V  V  K  *  G  L  L  L  E  W  E  L  *  *  T  T  V  R  V  D  F  L  S  M  E  N  R  S  I  I  S  W  E  L  Q  P  S  V  S  T  L  L  S  M  M  L  V  L  Q  R  L  T  Q  *  L  L  W  R  K  S  A  F  L  D  V  V  F  Q  L  :  A  L  E  L  F  G  T  L  Q  K  L  N  Q  V  P  L  L  P  S  L  A  W  E  Q  L  V  L  L :   W  R  R  V  Q  K  L  L  V  L  H  E  L  L  E  L  I  L  T  A  K  S  L  I  E  :  P  K  I  L  V  *  L  N  S  L  I  P  R  S  M  S  N  P  F  S  K  S  L  W  I  L  L  M  V  V  L  I  T  V  L  S  A  *  E  M  S  L  L  *  G  L  L  *  S  V  V  T  R :   V  G  E  P  Q  *  L  *  V  L  L  L  L  V  R  R  Y  L  H  V  H  F  S  W  *  L  V  V  F  G  R  E  L  L  L  V  V  S  K  A  D  H  K  F  L  P  S  W  T  S  I  *  R  R :   K  S  R  W  M  N  T  S  L  I  T  *  H  L  R  T  *  T  K  L  S  T  *  C  M  T  G  T  A  S  V  L  S  W  I  C  L  Y  E  *  S  L  *  A  L  Y  V  A  Y  F  L  F  L  C  Y  F  S  E  T  I  Y  L  S  P  C  *  L  C  V  E  *  K  E  S  E  K  K  R  I  K  M  T  D  E  L  F  L  N  G  W  *  F  I  I  F  S  S  K  M  F  L  L  *  R  L  K  P  S  L  L  V  L  E  F  G  I  N  H  C  H  V  C  I  N  G  I  L  P  F  P  K  * </second_frame>
            <third_frame>   C  G  G  L  G  T  Q  Q  A  L  G  D  *  G  C  A  G  G  S  T  A  S  R  *  S  P  G  *  S  F  V  Y  C  S  L  P  H  R  C  L  Y  L  E  W  Q   : G  S  *  G  S  L  P  M  C  S  W  S  *  G  C  G  :  D  S  R  K  C  W  *  G  S  D  *  G  S  A  R  R  P  C  Y  T  L  L  P  G  R  M  Q  R  M  Q  V  L  Q  I  R  K  D  Q  S  L  W  *  S  K  G  C  Y  W  S  G  S  Y  D  E  R  P  *  E  S  I  F  Y  Q  W  K  T  D  L  S  F  H  G  N  F  N  L  Q  S  V  H  C  C  P  *  C  *  C  C  K  D  *  P  S  S  S  S  G  E  S  L  P  S  W  M  W  C  S  N  W :   P  W  S  C  L  E  H  C  K  S  *  T  R  F  H  C  C  R  L  W  P  G  N  S  W  S  C   : C  G  G  G  C  K  S  C  W  C  F  T  N  Y  W  N  *  Y  *  Q  Q  K  V  *  *  S :   Q  K  F  W  C  D  *  I  H  *  S  Q  G  A  *  A  T  H  S  A  S  H  C  G  S  Y  *  W  W  C  *  L  Q  F  *  V  H  R  K  C  L  C  Y  E  V  C  F  R  V  L  S  Q   : G  L  G  N  L  S  D  C  R  C  C  C  F  W  S  G  D  I  Y  T  S  I  S  A  G  D  W  S  C  L  E  G  N  C  F  W  W  F  Q  K  P  I  T  S  S  F  P  R  G  Q  V  F  K  E   : G  N  Q  G  G  *  I  H  H  S  *  H  D  T  C  G  H  K  Q  S  F  R  P  D  A  *  R  G  L  P  P  C  C  P  G  Y  V  C  M  N  E  V  C  R  L  F  M  L  L  T  F  C  F  C  A  I  S  Q  R  L  F  T  F  P  L  A  N  Y  V  L  N  K  K  K  V  R  K  K  G  S  R  *  Q  M  N  S  F  *  M  D  G  S  L  L  S  F  Q  V  K  C  S  Y  F  E  G  *  N  H  H  Y  W  F  *  S  L  A  *  T  I  A  M  F  A  *  M  E  S  S  L  F  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6326" stop="6189"/>
                    <exon start="5746" stop="5700"/>
                    <exon start="5575" stop="5250"/>
                    <exon start="4497" stop="4415"/>
                    <exon start="4332" stop="4257"/>
                    <exon start="3026" stop="2869"/>
                    <exon start="2642" stop="2481"/>
                    <exon start="2391" stop="2275"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKAFDLMHDGDCLRVVLDMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="2026" PGL_stop="2391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2026" e_stop="2391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="2026" e_stop="2391" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2026" stop="2391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGTTCATCTGTCATCTTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACACATAATTAGCAAGGGGAAAGGTAAATAGTCTCTGAGAAATAGCACAAAAACAGAAAGTAAGCAACATAAAGAGCCTACAGACTTCATTCATACAAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCAGGTCGAAAGCTTTGTTTATGTCCGCAAGTGTCATGTTATGAGTGATGTATTCATCCACCTTGATTTC</gDNA_template>
            <first_frame> Q  T  W  Q  W  F  M  P  N  S  K  T  S  N  D  G  F  S  L  Q  S  K  N  I  L  L  E  K  I  I  N  Y  H  P  F  K  K  S  S  S  V  I  L  I  L  F  F  S  L  S  F  Y  S  T  H  N  *  Q  G  E  R  *  I  V  S  E  K  *  H  K  N  R  K  *  A  T  *  R  A  Y  R  L  H  S  Y  K  H  I  Q  D  N  T  E  A  V  P  V  M  H  Q  V  E  S  F  V  Y  V  R  K  C  H  V  M  S  D  V  F  I  H  L  D  F </first_frame>
            <second_frame>  K  H  G  N  G  L  C  Q  T  L  K  P  V  M  M  V  L  A  F  K  V  R  T  F  Y  L  K  R  *  *  T  T  I  H  L  K  R  V  H  L  S  S  *  S  F  F  S  H  F  L  F  I  Q  H  I  I  S  K  G  K  G  K  *  S  L  R  N  S  T  K  T  E  S  K  Q  H  K  E  P  T  D  F  I  H  T  N  I  S  R  T  T  R  R  Q  S  P  S  C  I  R  S  K  A  L  F  M  S  A  S  V  M  L  *  V  M  Y  S  S  T  L  I   </second_frame>
            <third_frame>   N  M  A  M  V  Y  A  K  L  *  N  Q  *  *  W  F  *  P  S  K  *  E  H  F  T  *  K  D  N  K  L  P  S  I  *  K  E  F  I  C  H  L  D  P  F  F  L  T  F  F  L  F  N  T  *  L  A  R  G  K  V  N  S  L  *  E  I  A  Q  K  Q  K  V  S  N  I  K  S  L  Q  T  S  F  I  Q  T  Y  P  G  Q  H  G  G  S  P  R  H  A  S  G  R  K  L  C  L  C  P  Q  V  S  C  Y  E  *  C  I  H  P  P  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21136" PGL_stop="20576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21136" e_stop="20576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="21136" e_stop="20576" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21136" stop="20588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTTCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGAATATAATCAAGAATAAAAGATGGCAATAATAACCCACCAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTACAGTAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTTCTCTGAAGATTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGTTTCTGCCAGTTTTTCCAGAATTGAAGTCTGCTGCTCAAAACGACTAAACAGGTCGTTACATAT</gDNA_template>
            <first_frame> I  D  S  S  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  E  Y  N  Q  E  *  K  M  A  I  I  T  H  Q  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  T  V  G  I  V  K  N  V  P  *  N  N  *  G  I  P  T  Q  T  G  I  T  Q  S  V  T  A  R  R  A  C  D  G  P  S  C  C  S  V  T  E  F  R  D  S  I  S  L  K  I  L  *  R  S  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  R  P  P  R  R  S  V  V  P  M  T  V  R  R  G  V  R  R  F  C  Q  F  F  Q  N  *  S  L  L  L  K  T  T  K  Q  V  V  T  Y </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  N  I  I  K  N  K  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  Q  *  E  *  S  K  T  S  L  K  T  I  E  E  F  R  L  R  L  G  L  R  S  L  *  R  P  V  V  P  A  T  V  R  P  A  A  P  S  Q  S  S  E  T  Q  F  L  *  R  F  C  D  G  P  S  H  L  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  D  P  L  D  G  P  S  C  P  *  R  S  V  V  G  S  V  V  S  A  S  F  S  R  I  E  V  C  C  S  K  R  L  N  R  S  L  H   </second_frame>
            <third_frame>   R  F  F  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  R  I  *  S  R  I  K  D  G  N  N  N  P  P  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  Y  S  R  N  S  Q  K  R  P  L  K  Q  L  R  N  S  D  S  D  W  D  Y  A  V  C  D  G  P  S  C  L  R  R  S  V  L  L  L  R  H  R  V  Q  R  L  N  F  S  E  D  S  V  T  V  R  H  T  C  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  P  S  T  V  R  R  A  H  D  G  P  S  W  G  P  S  F  L  P  V  F  P  E  L  K  S  A  A  Q  N  D  *  T  G  R  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20960" stop="20706"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNYSRNSQKRPLKQLRNSDSDWDYAVCDGPSCLRRSVLLLRHRVQRLNFSEDSVTVRHTCDGPSCHSVTKFRESIFSTQFQIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21745" PGL_stop="22223"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21745" e_stop="22223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="21745" e_stop="22223" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21745" stop="21982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21746" stop="22223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCAGAGTGTCACGTACCGACATAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATGTTACCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACC</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  Q  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  M  L  P  D  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  R  V  S  R  T  D  I  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  C  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  *  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  V  T  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22537" PGL_stop="22821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22537" e_stop="22821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="22537" e_stop="22821" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22537" stop="22821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACGAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  P  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  R  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  R  A  S  H  W  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  E  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="25538" PGL_stop="22828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25538" e_stop="22828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="25538" e_stop="22828" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25538" stop="24826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25538" stop="24943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25538" stop="25013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25467" stop="24788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25467" stop="25109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25018" stop="24360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24949" stop="24188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24949" stop="24289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24722" stop="24180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24546" stop="24216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24339" stop="23781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24335" stop="23572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24255" stop="23466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24253" stop="23720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24179" stop="23482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23618" stop="22899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23615" stop="22952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23260" stop="22828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAACCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGACTACCCGGTTCAAGATCAATACAGAAGTCAATGTCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACTGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCATACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGTATCAAATAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGTCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCTACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGATAACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGGCCTCTAGAGTAAGAACCATTAAACTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGATCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTCACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACATCCTCCCACGACCTCTATCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  V  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  G  S  K  T  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  I  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  T  T  R  F  K  I  N  T  E  V  N  V  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  *  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  W  I  G  S  V  V  T  L  P  Y  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  S  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  *  L  N  G  S  N  *  V  T  S  G  T  L  A  S  R  V  R  T  I  K  L  T  S  F  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  D  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  V  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  K  I  S  K  N  L  I  D  H  L  *  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  H  H  F  L  S  R  W  R  S  H  R  P  S  I  R  R  A  R  C  S  S  S  S  S  R  G  H  P  P  T  T  S  I  T  A  S  C  R  Y  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  P  V  F  G  T  S  V  A  R  I  F  N  *  *  *  S  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  L  P  G  S  R  S  I  Q  K  S  M  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  V  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  V  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  L  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  D  N  *  M  G  R  T  E  *  P  P  E  P  W  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  I  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  I  L  P  R  P  L  S  R  P  L  A  A  T  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  R  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  W  F  *  N  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  D  Y  P  V  Q  D  Q  Y  R  S  Q  C  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  L  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  L  D  W  K  C  S  H  P  P  I  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  Y  Q  I  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  S  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  Y  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  I  T  E  W  V  E  L  S  N  L  R  N  P  G  L  *  S  K  N  H  *  T  H  L  L  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  L  P  H  P  L  S  P  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  T  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23797" stop="23408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRIKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25373" stop="25035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIVNKYDHKEIQIWLKNPVHQTHERSRGIRKTKGHHYKFVMPIPGSKTSLWHIRCPYFQLMIIGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24107" stop="23853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24811" stop="24566"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRLPGSRSIQKSMSLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23026" stop="22829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGNSSFCTCSFSPSSPSLTTSSVGGGVTALVSDGLGARPLPLEDILPRPLSRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="22895" PGL_stop="23448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22895" e_stop="23448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="22895" e_stop="23448" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22895" stop="23448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCGTCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTGAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  V  *  Y  *  G  G  D  S  S  T  D  *  G  S  G  E  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  R  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  *  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22896" stop="23447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGENEQVQNEELPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="23522" PGL_stop="24966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23522" e_stop="23694"/>
            <exon e_start="24439" e_stop="24966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.965"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="23522" e_stop="23694" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23695" i_stop="24438" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="24439" e_stop="24966" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23522" stop="23694"/>
              <exon start="24439" stop="24966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCAGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCAGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGACATTGACTTCTGTATTGATCTTGAACCGGGTAGTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  M  G  G  *  L  H  F  Q  S  S  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  S  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  H  *  L  L  Y  *  S  *  T  G  *  S  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  S  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  Y  G  R  V  T  T  L  P  I  Q  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  T  L  T  S  V  L  I  L  N  R  V  V  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23523" stop="23694"/>
                    <exon start="24439" stop="24965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGSRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="28272" PGL_stop="28676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28272" e_stop="28676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="28272" e_stop="28676" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28272" stop="28676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTATACTCTTAATAGTGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATTCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTAATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGAGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  I  L  L  I  V  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  S  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  Y  S  *  *  *  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  N  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  E  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  Y  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  F  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  R  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="29058" PGL_stop="28722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29058" e_stop="28722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="29058" e_stop="28722" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29058" stop="28722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGGTAACATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCACTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  V  S  S  A  N  S  K  *  K  T  V  Y  I  R  *  H  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  S  G  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  H  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  H  D  T  R  S </second_frame>
            <third_frame>   *  V  G  I  I  G  Q  L  K  I  E  N  S  I  Y  Q  V  T  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  T  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  M  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="28732" PGL_stop="29210"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28732" e_stop="29210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="28732" e_stop="29210" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28732" stop="28969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28733" stop="29210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGTGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATGTTACCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACC</gDNA_template>
            <first_frame> S  *  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  W  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  M  L  P  D  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  C  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   M  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  V  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  V  T  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0130D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="43304" PGL_stop="35050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43304" e_stop="43011"/>
            <exon e_start="35394" e_stop="35050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.973"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="43304" e_stop="43011" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43010" i_stop="35395" i_length="7616"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="35394" e_stop="35050" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43304" stop="43011"/>
              <exon start="35394" stop="35102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43304" stop="43011"/>
              <exon start="35394" stop="35102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43091" stop="43011"/>
              <exon start="35394" stop="35050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACATAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGATTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGTAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAGCTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATATTATTTTGAAGAT : ATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTGTATTTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTAAATACGAAAGTAGAGGCTTACTTGAGGAATTTGTTTGCGATATATGTAAGTAAGTATGGAAAATTTTCCAAAAATCAACCATCTTCATCTGACTCATCTGATTCTTCTGCTAGTGGTATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  *  V  E  F  H  L  F  D  V  R  H  S  R  K  V  *  E  G  F  *  E  I  *  S  L  *  W  *  F  *  F  F  S  C  Y  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  E  E  C  H  K  V  S  *  K  I  L  *  A  H  F  E  S  F  R  F  T  V  C  Y  L  *  Y  Y  F  E  D  :  I  C  E  L  D  A  Y  L  K  L  C  I  A  S  D  D  L  D  L  S  K  N  G  F  G  N  E  R  K  I  Q  E  I  L  G  D  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  V  F  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  K  Y  E  S  R  G  L  L  E  E  F  V  C  D  I  C  K  *  V  W  K  I  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  C  *  W  Y  F </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  R  W  N  S  T  Y  L  M  L  D  I  A  E  K  F  E  K  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  T  D  V  C  E  D  G  S  I  V  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  T  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  I  I  L  K  I :   Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  M  A  S  G  M  K  E  K  F  K  K  Y  W  G  T  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  F  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  T  K  V  E  A  Y  L  R  N  L  F  A  I  Y  V  S  K  Y  G  K  F  S  K  N  Q  P  S  S  S  D  S  S  D  S  S  A  S  G  I   </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  G  G  I  P  P  I  *  C  *  T  *  Q  K  S  L  R  R  L  L  R  D  L  I  F  M  M  V  I  L  I  L  F  L  L  L  M  F  V  K  M  E  V  S  *  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  S  S  L  *  K  F  Q  V  H  G  M  L  L  V  I  L  F  *  R   : Y  M  *  T  *  C  L  F  E  I  M  Y  S  K  *  *  P  *  F  E  *  K  W  L  R  E  *  K  K  N  S  R  N  I  G  G  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  C  I  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  R  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  S  M  E  N  F  P  K  I  N  H  L  H  L  T  H  L  I  L  L  L  V  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43303" stop="43011"/>
                    <exon start="35394" stop="35370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECDKMLSLDVPTRWNSTYLMLDIAEKFEKAFERFDLYDGNFNSFLATDVCEDGSIVGSIQYEDWANVRNVTKFLEKFYELTLKVSGSRYVTCNIILKIYVNLMLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35336" stop="35052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKMASGMKEKFKKYWGTEKMNKMIFIASVLDPRNKFVYFSFALEELLGEETGNVVNTKVEAYLRNLFAIYVSKYGKFSKNQPSSSDSSDSSASGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="68121" PGL_stop="62641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68121" e_stop="67790"/>
            <exon e_start="63053" e_stop="62641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="68121" e_stop="67790" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67789" i_stop="63054" i_length="4736"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="63053" e_stop="62641" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68121" stop="67790"/>
              <exon start="63053" stop="62926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68078" stop="67790"/>
              <exon start="63053" stop="62641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67993" stop="67790"/>
              <exon start="63053" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATGCCAAAGGTTCTAGATCTTGCCATTACACCTGATGGAGAAAAACTTATCAGTATATTTTCTGACAAAGATATCCGAATATTGAATGTGGGGACAGGTGGTGAACATGTGATTTCAGAGGAGTATCCAATCACATCCCTTTCACTATCAGGGGATGGTAAATTCTTCATAGTAAACCTTAATAGTCAAGAGATTCATATGTGGGATATTGCAGGCGAGTGGCTTAGCCCCATGAAGTTTGAAGGTCACAGACAACATAAGTATGTGATACGCTCCTGTTTTGGAGGATTGGACAGCACTTTTATCGCCAGTGGTAGTGAAGATTCAAAG : GTGTACATATGGAATCGCCGAGGTTCAAAGCCTATTGAGATCTTGTGTGGCCATTCAATGACTGTGAACTCTGTGAGCTGGAATCCTAAAAGGCCTCAAATGCTAGCTTCAGCAAGTGATGATCAAACTATCCGCATATGGGGGCCTGATGTTCGAAGTAAATAGTAACGAGCCTGGTATATGCAAATGGATTTTTCTCAATTGCTAGTTCCATTTGCCATGTAAATCTGTTTCTTCTCTACAAATTTTGGCATGTCTATTCCCCCCATGTAAATTGGCATAGCTAGAAAAATAATTTTGTCTCCGCGTGTATGTACAACGCCAACGTTGTGGAGTGTAAGTAAAAACTCTTTCCCTAAAGTTTGATTGAAATTAGTAAAAGAAAGTAAAACTTTCTTATATCAAAGCTAGTG</gDNA_template>
            <first_frame> G  C  Q  R  F  *  I  L  P  L  H  L  M  E  K  N  L  S  V  Y  F  L  T  K  I  S  E  Y  *  M  W  G  Q  V  V  N  M  *  F  Q  R  S  I  Q  S  H  P  F  H  Y  Q  G  M  V  N  S  S  *  *  T  L  I  V  K  R  F  I  C  G  I  L  Q  A  S  G  L  A  P  *  S  L  K  V  T  D  N  I  S  M  *  Y  A  P  V  L  E  D  W  T  A  L  L  S  P  V  V  V  K  I  Q  R :   C  T  Y  G  I  A  E  V  Q  S  L  L  R  S  C  V  A  I  Q  *  L  *  T  L  *  A  G  I  L  K  G  L  K  C  *  L  Q  Q  V  M  I  K  L  S  A  Y  G  G  L  M  F  E  V  N  S  N  E  P  G  I  C  K  W  I  F  L  N  C  *  F  H  L  P  C  K  S  V  S  S  L  Q  I  L  A  C  L  F  P  P  C  K  L  A  *  L  E  K  *  F  C  L  R  V  Y  V  Q  R  Q  R  C  G  V  *  V  K  T  L  S  L  K  F  D  *  N  *  *  K  K  V  K  L  S  Y  I  K  A  S  </first_frame>
            <second_frame>  D  A  K  G  S  R  S  C  H  Y  T  *  W  R  K  T  Y  Q  Y  I  F  *  Q  R  Y  P  N  I  E  C  G  D  R  W  *  T  C  D  F  R  G  V  S  N  H  I  P  F  T  I  R  G  W  *  I  L  H  S  K  P  *  *  S  R  D  S  Y  V  G  Y  C  R  R  V  A  *  P  H  E  V  *  R  S  Q  T  T  *  V  C  D  T  L  L  F  W  R  I  G  Q  H  F  Y  R  Q  W  *  *  R  F  K   : G  V  H  M  E  S  P  R  F  K  A  Y  *  D  L  V  W  P  F  N  D  C  E  L  C  E  L  E  S  *  K  A  S  N  A  S  F  S  K  *  *  S  N  Y  P  H  M  G  A  *  C  S  K  *  I  V  T  S  L  V  Y  A  N  G  F  F  S  I  A  S  S  I  C  H  V  N  L  F  L  L  Y  K  F  W  H  V  Y  S  P  H  V  N  W  H  S  *  K  N  N  F  V  S  A  C  M  Y  N  A  N  V  V  E  C  K  *  K  L  F  P  *  S  L  I  E  I  S  K  R  K  *  N  F  L  I  S  K  L  V </second_frame>
            <third_frame>   M  P  K  V  L  D  L  A  I  T  P  D  G  E  K  L  I  S  I  F  S  D  K  D  I  R  I  L  N  V  G  T  G  G  E  H  V  I  S  E  E  Y  P  I  T  S  L  S  L  S  G  D  G  K  F  F  I  V  N  L  N  S  Q  E  I  H  M  W  D  I  A  G  E  W  L  S  P  M  K  F  E  G  H  R  Q  H  K  Y  V  I  R  S  C  F  G  G  L  D  S  T  F  I  A  S  G  S  E  D  S  K  :  V  Y  I  W  N  R  R  G  S  K  P  I  E  I  L  C  G  H  S  M  T  V  N  S  V  S  W  N  P  K  R  P  Q  M  L  A  S  A  S  D  D  Q  T  I  R  I  W  G  P  D  V  R  S  K  *  *  R  A  W  Y  M  Q  M  D  F  S  Q  L  L  V  P  F  A  M  *  I  C  F  F  S  T  N  F  G  M  S  I  P  P  M  *  I  G  I  A  R  K  I  I  L  S  P  R  V  C  T  T  P  T  L  W  S  V  S  K  N  S  F  P  K  V  *  L  K  L  V  K  E  S  K  T  F  L  Y  Q  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68119" stop="67790"/>
                    <exon start="63053" stop="62889"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPKVLDLAITPDGEKLISIFSDKDIRILNVGTGGEHVISEEYPITSLSLSGDGKFFIVNLNSQEIHMWDIAGEWLSPMKFEGHRQHKYVIRSCFGGLDSTFIASGSEDSKVYIWNRRGSKPIEILCGHSMTVNSVSWNPKRPQMLASASDDQTIRIWGPDVRSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73424" PGL_stop="72812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73424" e_stop="72812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="73424" e_stop="72812" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73424" stop="72812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTATAACACAATTGTACATGTGCAGCACTAAACCTTATATACAGATGAACTCAAAAACTCCACTGTTCTAAATCTAAATTGAGTCTAAAACATCAATTATAGAGACAGTTTCATTTGAGTATAATTGATTGCACCAAAAACATAACAACAAAATGCAGTTGAGTTTAACTTTCTGCATACTATTCTCTATGCTCTCAAAACACCTAGAATTTCTCTCTTTCCAGGTTGCCCACCAGATTGAAGCAGGGATAATTCTCCATCTCGTTCTGTCTTTAGCTAGCACTCCTGCCTCCTCTCAACTTTTTAAGGCTTCAGTAATTCTCCTAGGCATAGCCCAGGATATGCTTTGCGACTCAAGAATACCCTCCATAACTGTTGAGTAAATTTGCAGTGTAGAAAAAGATGGTTAACAGTTTCTGATGTTTCTCCACAAAGAAGACACCTAGAACACAAGGTTATCTCCCTTTTCATAACATTATCCTGTGTCAAAGTTGCTTCCTTAGCTAGCAGCGGGCAGCCATATAAAACATGAGACTTTATAAGGAATTCTGCCTTTCCAAGTTTGTCTCCATGGCCAGGTAGGAATCTGTTGACTTGGTTGCTCCATCAA</gDNA_template>
            <first_frame> V  L  *  H  N  C  T  C  A  A  L  N  L  I  Y  R  *  T  Q  K  L  H  C  S  K  S  K  L  S  L  K  H  Q  L  *  R  Q  F  H  L  S  I  I  D  C  T  K  N  I  T  T  K  C  S  *  V  *  L  S  A  Y  Y  S  L  C  S  Q  N  T  *  N  F  S  L  S  R  L  P  T  R  L  K  Q  G  *  F  S  I  S  F  C  L  *  L  A  L  L  P  P  L  N  F  L  R  L  Q  *  F  S  *  A  *  P  R  I  C  F  A  T  Q  E  Y  P  P  *  L  L  S  K  F  A  V  *  K  K  M  V  N  S  F  *  C  F  S  T  K  K  T  P  R  T  Q  G  Y  L  P  F  H  N  I  I  L  C  Q  S  C  F  L  S  *  Q  R  A  A  I  *  N  M  R  L  Y  K  E  F  C  L  S  K  F  V  S  M  A  R  *  E  S  V  D  L  V  A  P  S  </first_frame>
            <second_frame>  Y  Y  N  T  I  V  H  V  Q  H  *  T  L  Y  T  D  E  L  K  N  S  T  V  L  N  L  N  *  V  *  N  I  N  Y  R  D  S  F  I  *  V  *  L  I  A  P  K  T  *  Q  Q  N  A  V  E  F  N  F  L  H  T  I  L  Y  A  L  K  T  P  R  I  S  L  F  P  G  C  P  P  D  *  S  R  D  N  S  P  S  R  S  V  F  S  *  H  S  C  L  L  S  T  F  *  G  F  S  N  S  P  R  H  S  P  G  Y  A  L  R  L  K  N  T  L  H  N  C  *  V  N  L  Q  C  R  K  R  W  L  T  V  S  D  V  S  P  Q  R  R  H  L  E  H  K  V  I  S  L  F  I  T  L  S  C  V  K  V  A  S  L  A  S  S  G  Q  P  Y  K  T  *  D  F  I  R  N  S  A  F  P  S  L  S  P  W  P  G  R  N  L  L  T  W  L  L  H  Q </second_frame>
            <third_frame>   I  I  T  Q  L  Y  M  C  S  T  K  P  Y  I  Q  M  N  S  K  T  P  L  F  *  I  *  I  E  S  K  T  S  I  I  E  T  V  S  F  E  Y  N  *  L  H  Q  K  H  N  N  K  M  Q  L  S  L  T  F  C  I  L  F  S  M  L  S  K  H  L  E  F  L  S  F  Q  V  A  H  Q  I  E  A  G  I  I  L  H  L  V  L  S  L  A  S  T  P  A  S  S  Q  L  F  K  A  S  V  I  L  L  G  I  A  Q  D  M  L  C  D  S  R  I  P  S  I  T  V  E  *  I  C  S  V  E  K  D  G  *  Q  F  L  M  F  L  H  K  E  D  T  *  N  T  R  L  S  P  F  S  *  H  Y  P  V  S  K  L  L  P  *  L  A  A  G  S  H  I  K  H  E  T  L  *  G  I  L  P  F  Q  V  C  L  H  G  Q  V  G  I  C  *  L  G  C  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73293" stop="73039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQKHNNKMQLSLTFCILFSMLSKHLEFLSFQVAHQIEAGIILHLVLSLASTPASSQLFKASVILLGIAQDMLCDSRIPSITVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="74908" PGL_stop="74387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74908" e_stop="74387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="74908" e_stop="74387" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74908" stop="74387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATGAAAAATTGAAAGGGAGGGGTTTCTATATTGCTTCTTGGTGCTCTCACTGTAATGAGACTGAGGAAACCAACAACCATCTGTTCCTCCATTGCAAAGTGACAACACAATTGTGGAACCTTTTTTTGGGACTAACACATACAGAATGGATTATGAGAATGGATTATGCCTGGACATACAGCAGATCTACTTAGTTGGATCAGCAGAGGGGGGAGAAAATCTAAGAAAAAGTGGCGGAGCATAATAACATCATGCATTTGGTGGTGTATTTGGAAAGAAAAAAATAGCAGATGCTATGATAACAAAGCAAATTTAATAGAGAGTCAAATGGAACTGCTTGACTACTTTTTATTTTTGGTGTAAAGAGGAATGGATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCTCTTTGTAATCTATTAGCCTTTTTTTTTTTCTCTTGTTGGAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGCTGATGAATACACAACATTATCTTTGTCAAAAA</gDNA_template>
            <first_frame> I  M  K  N  *  K  G  G  V  S  I  L  L  L  G  A  L  T  V  M  R  L  R  K  P  T  T  I  C  S  S  I  A  K  *  Q  H  N  C  G  T  F  F  W  D  *  H  I  Q  N  G  L  *  E  W  I  M  P  G  H  T  A  D  L  L  S  W  I  S  R  G  G  R  K  S  K  K  K  W  R  S  I  I  T  S  C  I  W  W  C  I  W  K  E  K  N  S  R  C  Y  D  N  K  A  N  L  I  E  S  Q  M  E  L  L  D  Y  F  L  F  L  V  *  R  G  M  D  R  R  S  C  T  N  F  G  F  Y  R  L  F  V  I  Y  *  P  F  F  F  S  L  V  G  N  Q  F  L  E  V  S  S  I  S  L  M  L  M  N  T  Q  H  Y  L  C  Q  K </first_frame>
            <second_frame>  S  *  K  I  E  R  E  G  F  L  Y  C  F  L  V  L  S  L  *  *  D  *  G  N  Q  Q  P  S  V  P  P  L  Q  S  D  N  T  I  V  E  P  F  F  G  T  N  T  Y  R  M  D  Y  E  N  G  L  C  L  D  I  Q  Q  I  Y  L  V  G  S  A  E  G  G  E  N  L  R  K  S  G  G  A  *  *  H  H  A  F  G  G  V  F  G  K  K  K  I  A  D  A  M  I  T  K  Q  I  *  *  R  V  K  W  N  C  L  T  T  F  Y  F  W  C  K  E  E  W  I  E  E  A  A  Q  I  L  D  F  I  G  S  L  *  S  I  S  L  F  F  F  L  L  L  E  T  N  F  W  R  S  P  A  Y  P  *  C  *  *  I  H  N  I  I  F  V  K   </second_frame>
            <third_frame>   H  E  K  L  K  G  R  G  F  Y  I  A  S  W  C  S  H  C  N  E  T  E  E  T  N  N  H  L  F  L  H  C  K  V  T  T  Q  L  W  N  L  F  L  G  L  T  H  T  E  W  I  M  R  M  D  Y  A  W  T  Y  S  R  S  T  *  L  D  Q  Q  R  G  E  K  I  *  E  K  V  A  E  H  N  N  I  M  H  L  V  V  Y  L  E  R  K  K  *  Q  M  L  *  *  Q  S  K  F  N  R  E  S  N  G  T  A  *  L  L  F  I  F  G  V  K  R  N  G  *  K  K  L  H  K  F  W  I  L  *  A  L  C  N  L  L  A  F  F  F  F  S  C  W  K  P  I  F  G  G  L  Q  H  I  L  N  A  D  E  Y  T  T  L  S  L  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74749" stop="74543"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWIMPGHTADLLSWISRGGRKSKKKWRSIITSCIWWCIWKEKNSRCYDNKANLIESQMELLDYFLFLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74906" stop="74712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEKLKGRGFYIASWCSHCNETEETNNHLFLHCKVTTQLWNLFLGLTHTEWIMRMDYAWTYSRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="81031" PGL_stop="79617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81031" e_stop="80138"/>
            <exon e_start="79640" e_stop="79617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="81031" e_stop="80138" e_length="894"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80137" i_stop="79641" i_length="497"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="79640" e_stop="79617" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81031" stop="80299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80905" stop="80138"/>
              <exon start="79640" stop="79617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80880" stop="80160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80868" stop="80200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80851" stop="80282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCAAAGGCTTCTCTCTTGATGCCACCGCTGCAATGAAGTTAACACCACTTTTTCTATACAAAGACAAGAAAACAAGAATTCAGTGGCATGAATTTTCTTTGTTTAACTTTACTGCTTCACTTCACAATTGGGGGTTTGAATCTTTTTCTCTTTGGGAGTTTTTAGTTGTTCAGAAGTGGAAAGGAGGCATCTTTAGAATGTAACTGGTGTTGGGGTTCTTGAATTTGCATACAGATACAGGTATGGAGACTTCATTGGTTAATCTTGGGTCGAAAAAGCTAATAAAGAAGCATGAATTTGTTAGGGTCATCATTCAATGTCTTTATTCTTTAGGCTACAGAAAGTCTGCTGTGTGTTTGGAATCAGAATCTGGGATTAGCTATAAATCTAATGAATTTGAGACCCTTGAGTCTTATATTCGTGATGCTAATTGGGATGCATGTATTGAAACCCTTAATAGACTTAATGGCTTGACAAATGAAACGAGAGCTTCAGCTTTATTTCTTGTTCTTAAACAGTGGTTTTTAGAGTATTTGAATCTTGGGGAAGATTCTTTAGCTTTGGAGATTTTACAGAAAAAAATGTCTGGTTTGGAAGTGGGGAGGGATAAGGTTCATAGGCTTGCTTTTGGATTGCTCTCTTTGAAAGAGTTGGGGTTGGACAAGGAAGATCCTAATGGTATCTATGAATTCCGAAAAGAATTGCTGACTGAACTCGAAAAAGTACTGCCACCACCTATTACAGTGCCAGAACGGAGGTTAGATTACTTGGTTGAAATGGCAGTATGGTCACAACTAGAGAAATGTGTGTTTCATAATTCAGTTGATGCAATTACGCTCTACGAAGATCACCATTGTGACTCCAGTCAGTTTCCTTCAAAGACCATTCAG : TGGTCATTTGTTCTCCAGATAAGT</gDNA_template>
            <first_frame> F  S  K  G  F  S  L  D  A  T  A  A  M  K  L  T  P  L  F  L  Y  K  D  K  K  T  R  I  Q  W  H  E  F  S  L  F  N  F  T  A  S  L  H  N  W  G  F  E  S  F  S  L  W  E  F  L  V  V  Q  K  W  K  G  G  I  F  R  M  *  L  V  L  G  F  L  N  L  H  T  D  T  G  M  E  T  S  L  V  N  L  G  S  K  K  L  I  K  K  H  E  F  V  R  V  I  I  Q  C  L  Y  S  L  G  Y  R  K  S  A  V  C  L  E  S  E  S  G  I  S  Y  K  S  N  E  F  E  T  L  E  S  Y  I  R  D  A  N  W  D  A  C  I  E  T  L  N  R  L  N  G  L  T  N  E  T  R  A  S  A  L  F  L  V  L  K  Q  W  F  L  E  Y  L  N  L  G  E  D  S  L  A  L  E  I  L  Q  K  K  M  S  G  L  E  V  G  R  D  K  V  H  R  L  A  F  G  L  L  S  L  K  E  L  G  L  D  K  E  D  P  N  G  I  Y  E  F  R  K  E  L  L  T  E  L  E  K  V  L  P  P  P  I  T  V  P  E  R  R  L  D  Y  L  V  E  M  A  V  W  S  Q  L  E  K  C  V  F  H  N  S  V  D  A  I  T  L  Y  E  D  H  H  C  D  S  S  Q  F  P  S  K  T  I  Q  :  W  S  F  V  L  Q  I  S </first_frame>
            <second_frame>  S  A  K  A  S  L  L  M  P  P  L  Q  *  S  *  H  H  F  F  Y  T  K  T  R  K  Q  E  F  S  G  M  N  F  L  C  L  T  L  L  L  H  F  T  I  G  G  L  N  L  F  L  F  G  S  F  *  L  F  R  S  G  K  E  A  S  L  E  C  N  W  C  W  G  S  *  I  C  I  Q  I  Q  V  W  R  L  H  W  L  I  L  G  R  K  S  *  *  R  S  M  N  L  L  G  S  S  F  N  V  F  I  L  *  A  T  E  S  L  L  C  V  W  N  Q  N  L  G  L  A  I  N  L  M  N  L  R  P  L  S  L  I  F  V  M  L  I  G  M  H  V  L  K  P  L  I  D  L  M  A  *  Q  M  K  R  E  L  Q  L  Y  F  L  F  L  N  S  G  F  *  S  I  *  I  L  G  K  I  L  *  L  W  R  F  Y  R  K  K  C  L  V  W  K  W  G  G  I  R  F  I  G  L  L  L  D  C  S  L  *  K  S  W  G  W  T  R  K  I  L  M  V  S  M  N  S  E  K  N  C  *  L  N  S  K  K  Y  C  H  H  L  L  Q  C  Q  N  G  G  *  I  T  W  L  K  W  Q  Y  G  H  N  *  R  N  V  C  F  I  I  Q  L  M  Q  L  R  S  T  K  I  T  I  V  T  P  V  S  F  L  Q  R  P  F  S :   G  H  L  F  S  R  *   </second_frame>
            <third_frame>   Q  Q  R  L  L  S  *  C  H  R  C  N  E  V  N  T  T  F  S  I  Q  R  Q  E  N  K  N  S  V  A  *  I  F  F  V  *  L  Y  C  F  T  S  Q  L  G  V  *  I  F  F  S  L  G  V  F  S  C  S  E  V  E  R  R  H  L  *  N  V  T  G  V  G  V  L  E  F  A  Y  R  Y  R  Y  G  D  F  I  G  *  S  W  V  E  K  A  N  K  E  A  *  I  C  *  G  H  H  S  M  S  L  F  F  R  L  Q  K  V  C  C  V  F  G  I  R  I  W  D  *  L  *  I  *  *  I  *  D  P  *  V  L  Y  S  *  C  *  L  G  C  M  Y  *  N  P  *  *  T  *  W  L  D  K  *  N  E  S  F  S  F  I  S  C  S  *  T  V  V  F  R  V  F  E  S  W  G  R  F  F  S  F  G  D  F  T  E  K  N  V  W  F  G  S  G  E  G  *  G  S  *  A  C  F  W  I  A  L  F  E  R  V  G  V  G  Q  G  R  S  *  W  Y  L  *  I  P  K  R  I  A  D  *  T  R  K  S  T  A  T  T  Y  Y  S  A  R  T  E  V  R  L  L  G  *  N  G  S  M  V  T  T  R  E  M  C  V  S  *  F  S  *  C  N  Y  A  L  R  R  S  P  L  *  L  Q  S  V  S  F  K  D  H  S   : V  V  I  C  S  P  D  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80824" stop="80138"/>
                    <exon start="79640" stop="79617"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLGFLNLHTDTGMETSLVNLGSKKLIKKHEFVRVIIQCLYSLGYRKSAVCLESESGISYKSNEFETLESYIRDANWDACIETLNRLNGLTNETRASALFLVLKQWFLEYLNLGEDSLALEILQKKMSGLEVGRDKVHRLAFGLLSLKELGLDKEDPNGIYEFRKELLTELEKVLPPPITVPERRLDYLVEMAVWSQLEKCVFHNSVDAITLYEDHHCDSSQFPSKTIQWSFVLQIS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81031" stop="80825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKGFSLDATAAMKLTPLFLYKDKKTRIQWHEFSLFNFTASLHNWGFESFSLWEFLVVQKWKGGIFRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="89791" PGL_stop="90822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89791" e_stop="90822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="89791" e_stop="90822" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89791" stop="90332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90236" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90236" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90236" stop="90789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGCATGCAATGTTTTCCAAAATTTAGAAGTAAATGGCGCACCTCTATCTGATATAATGGAAAGTGGAACTCCATACAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACTTTGACCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCATATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCTACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTATGAGCCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  G  A  P  L  S  D  I  M  E  S  G  T  P  Y  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  H  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  D  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  Y  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  F  E  L  *  A  F  V  R  I  V  R  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S  L  S  S  P  R  N  T  L  S  R  I  R  I  S  F  S  L  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  S  P  F  S  F  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  D  N  G  R  L  E  T  C  K  W  A  R  L  P  I  L  P  A  F  L  L  K  A  S  A  T  T  L  D  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  S  L  L  S  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  R  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  R  H  A  M  F  S  K  I  *  K  *  M  A  H  L  Y  L  I  *  W  K  V  E  L  H  T  I  E  Q  F  L  R  C  K  V  W  L  T  S  L  H  Y  K  S  L  *  P  E  *  S  E  Q  T  *  L  I  C  Q  Q  L  P  I  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  T  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  S  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  L  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  Y  P  L  L  A  I  P  Y  L  E  S  E  S  V  S  H  W  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  T  M  G  V  *  K  P  A  S  G  L  D  F  P  F  S  L  P  F  Y  L  R  H  L  P  P  H  *  T  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  L  S  S  V  S  N  S  N  L  F  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  P  Q  P  T  P  N  H  G  S  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   G  M  Q  C  F  P  K  F  R  S  K  W  R  T  S  I  *  Y  N  G  K  W  N  S  I  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  C  I  I  S  H  F  D  R  N  E  V  S  R  L  S  *  S  V  N  N  Y  P  Y  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  L  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  V  L  *  T  M  S  L  C  K  N  S  A  N  Q  I  I  D  A  G  Y  T  Y  S  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  I  L  S  S  Q  Y  L  I  S  N  P  N  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  F  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  R  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  S  P  C  L  S  T  *  G  I  C  H  H  I  R  L  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  L  S  P  Q  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  H  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  M  G  Q  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89954" stop="90217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICQQLPIWSHTYPLSLEDQPRSPLQFSPTSIQEWTFSEVSLQASGVHTLLADNSGIEQQNQQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90235" stop="90495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFVRIVRIKSSTRGTHTLPLILKTPSSSIFASLSSPRNTLSRIRISFSLVNCFPLILSRKEDLASTQAKNSPFSFTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90228" stop="90467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSANQIIDAGYTYSSLNSQNTFLIDFCFFILSSQYLISNPNQFLIGKLLSFNLIKKGRSCLHTGQKFSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89958" stop="90182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNYPYGVILTHCLWKTNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPTLPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="92342" PGL_stop="91682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92342" e_stop="91682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="92342" e_stop="91682" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92342" stop="91682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTGTATAGGAATTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAGATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTCGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGACGTGTTTCCTGTAAACCTTCCTGGTATGCCACCGGATAGGGATATTGATTTCTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCTTATAGGTTGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAACAAGGGCTTTATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  R  V  Y  R  N  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  F  D  C  N  A  K  T  V  T  L  A  K  P  E  T  D  L  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  V  N  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  L  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  G  C  I  G  I  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  R  W  L  I  S  M  *  F  W  V  *  L  G  F  P  Q  I  L  Q  S  S  I  V  M  L  K  L  *  R  W  P  S  L  R  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  F  V  L  R  E  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  V  S  F  W  T  C  F  L  *  T  F  L  V  C  H  R  I  G  I  L  I  S  V  L  I  W  S  R  A  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  C  *  T  R  A  L  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  E  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  R  D  G  *  F  R  C  N  S  G  Y  D  L  A  F  P  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  N  S  P  *  V  S  G  R  V  S  C  K  P  S  W  Y  A  T  G  *  G  Y  *  F  L  Y  *  S  G  A  G  H  S  P  H  F  H  T  P  L  *  V  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  V  K  Q  G  L  Y  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92342" stop="91683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDMPIRVSTPVGESVIVERVYRNCLVTFMGSNTHVDLVILEMVDFDVILGMTWLSPNFAIFDCNAKTVTLAKPETDLLVWEGDYTSTPVRIISFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPVNLPGMPPDRDIDFCIDLEPGTRPISIPPYRLAPAELRELKAQLQELLNKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="92042" PGL_stop="92372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92042" e_stop="92372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="92042" e_stop="92372" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCTCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCGAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATCTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAATTCCTATACACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCACGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  R  R  L  Q  N  L  G  K  A  K  S  Y  P  E  L  H  R  N  Q  P  S  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  N  S  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  R  N  H  K  P  </first_frame>
            <second_frame>  I  C  L  R  L  G  Q  R  Y  S  F  S  I  T  I  E  D  C  K  I  W  G  K  P  S  H  T  Q  N  Y  I  E  I  N  H  L  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  I  P  I  H  P  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  S  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  F  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  T  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92173" stop="92370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQFLYTLSTITDSPTGVETRIGMSSNSQCKLRPVANEEDTYENVDPGSNNTEATQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="94332" PGL_stop="95189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94332" e_stop="94830"/>
            <exon e_start="95006" e_stop="95189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="94332" e_stop="94830" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94831" i_stop="95005" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="95006" e_stop="95189" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94332" stop="94830"/>
              <exon start="95006" stop="95189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCGAACTTCAAGACATCAAGACGCGAAGGAAAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGATGTGGTGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGATGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAAGGGTCAGTACAAGCACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAGCAATATATATCAGATAATAACATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGCACATCTATGAGGACTCAATCCTCCACACCATACTTATTTGTGAAAGGTTCTTTAAGTTTTGAGTATATTAAGATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTAGGAACGTGACACTCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCACTAATACTACGTGTCG : GTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTTGGTTCGTGACACCCGATCCACTAATACTATGTGTCAGTTCGTGACACCCGATCCACTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAATAG</gDNA_template>
            <first_frame> M  S  E  L  Q  D  I  K  T  R  R  K  E  S  S  P  S  *  E  Q  *  L  T  L  K  S  D  V  V  K  T  G  *  S  Y  G  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  E  N  I  Q  V  R  V  S  T  S  T  S  T  E  *  I  S  S  A  N  S  K  *  K  A  I  Y  I  R  *  *  H  K  I  N  H  N  T  *  Q  V  T  T  T  S  T  I  T  I  G  H  N  P  S  T  S  M  R  T  Q  S  S  T  P  Y  L  F  V  K  G  S  L  S  F  E  Y  I  K  I  I  Q  D  S  F  S  L  F  L  L  C  R  N  V  T  L  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V   : G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  M  C  W  F  V  T  P  D  P  L  I  L  C  V  S  S  *  H  P  I  H  *  P  H  S  F  S  S  S  S  L  L  L  Y  Q  G  I  I  I  N   </first_frame>
            <second_frame>  C  P  N  F  K  T  S  R  R  E  G  K  N  P  V  R  A  R  N  N  S  S  P  *  N  L  M  W  *  R  L  A  R  V  T  V  E  L  K  T  M  V  R  L  L  H  S  T  N  N  K  E  K  T  Y  K  *  G  S  V  Q  A  Q  V  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  S  D  N  N  I  K  S  T  I  T  L  N  R  *  Q  Q  Q  V  P  *  P  L  G  T  T  Q  A  H  L  *  G  L  N  P  P  H  H  T  Y  L  *  K  V  L  *  V  L  S  I  L  R  *  F  K  I  H  S  L  Y  S  S  C  V  G  T  *  H  S  D  P  L  I  L  R  V  G  S  *  H  P  I  H  *  Y  Y  V  S  :  V  R  D  T  R  S  P  N  T  M  C  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  S  V  R  D  T  R  S  T  N  L  I  L  L  V  H  Q  A  F  F  Y  T  K  A  S  L  L  I  </second_frame>
            <third_frame>   V  R  T  S  R  H  Q  D  A  K  E  R  I  Q  S  E  L  G  T  I  A  H  P  E  I  *  C  G  E  D  W  L  E  L  R  L  S  *  R  R  W  Y  V  C  C  T  P  Q  I  T  K  R  K  H  T  S  K  G  Q  Y  K  H  K  Y  *  V  D  I  I  G  Q  L  K  I  E  S  N  I  Y  Q  I  I  T  *  N  Q  P  *  H  L  T  G  D  N  N  K  Y  H  N  H  W  A  Q  P  K  H  I  Y  E  D  S  I  L  H  T  I  L  I  C  E  R  F  F  K  F  *  V  Y  *  D  N  S  R  F  I  L  F  I  P  L  V  *  E  R  D  T  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  T  C  R :   F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  L  V  R  D  T  R  S  T  N  T  M  C  Q  F  V  T  P  D  P  L  T  S  F  F  *  F  I  K  P  S  F  I  P  R  H  H  Y  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0130D14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94605" stop="94830"/>
                    <exon start="95006" stop="95013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVTTTSTITIGHNPSTSMRTQSSTPYLFVKGSLSFEYIKIIQDSFSLFLLCRNVTLRSPNTTCRFVTPDPLILRVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 417 chains have been computed
$ 
$ memory statistics:
$ 373656 bytes spliced alignments in total
$ 163 spliced alignments have been stored
$ 2292 bytes was the average size of a spliced alignment
$ 31888 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1518 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 516 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 03:00:16
-->
