<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:55:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324700" ref_strand="+" ref_description="SGN-U324700        Tomato 200607 #1 [5 ESTs aligned] genbank/nr: protein(evalue: 1e-60, score=237)">
      <seq>cccgctcactcccctttttcttgagtttagtcggtcctggtatctgggagataaaccacatttatggagtgctgcagcacaggttttggggttactcattgaagtacttaaagatggtttccaaaagtatattgatagccttctacctgttatgagaaacatcttgcaatctgctgttaatgttcttacaaataagcaagtggatctaccgaatgatgcaacaatttcatcttggaaagaagcatattattcactggttctgtttgagaagatattaaatcaatttcctaagttgtgcttcaaaaaggattttgaggatctgtgggaagcaatctgtgagttgcttttgcatccgcatctgtggttgcgcaacatatcaaaccgtcttgtggcttgctactttgccactgtgactgaggcttgtaaagaaaaccttgaactgccacaaggaacttactttttgatgaggccaagtagacttttcttcatagctacttctctttgttgccaactgaaggtgttgcagactgatgatgctgccagtgatctcattactcaaaatcttgtattttcaatttgctctctgcattcattcttaggaaaaactgaatgtaaagataagttctggtccaccattgaacatgacgagcagggtcttctacttaaggcttttcaacagcttgattcaaggaaagggaaaaacatctatttgtctcttgtgtctgaccttagtgatcaagaagatgaaggccagcgctacttggtcatttcttatttgcttaagacaatgggaaagatttcccttcatgtggaggatatgcagatgagaattatcttcaattgtttcaaatcagtttcaccaaagcttatagatcagagtagattgttgtcccctgaaggtgaggttgattgccaaagctttgcatatcatatgctgttgcccctgtacaaagtttgtgaaggatttgccggaaaagttatatcagacgacgtgaaacaactggctgaaggagtgcgggggagcataagcaatgttataggaacacatatttttgtccaaatctacagtcatataaggaagaatatcaaatcgaagagggataagaggaaacaagaagagaaggtcattgctgtcgtcaatccaatgagaaacgccaaaagaaagctgcggatctcagaaaagcataaagcacacaagaagaggaaaatgatggcaatgaagatgggaagatggatgtagtagaatgtttactattataggatctatggagcatcgattttcgatagcagtagcttctatagaaatttttgtttaatttatgtaaccaaattttccattgtatagtggtgtaatattttgagttgcactaagcttagtttaaaaaattgaatcaagtttttcaatgtatagtgaatatagtgtctctttgattaacctacaatgctatagaacattgtaagaaattgaactctgtaatttattgatttttagtaatggagaggaatttttttcctttttttggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="3853" stop="231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3571" g_stop="3489" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3488" i_stop="3227" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3226" g_stop="2993" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="316" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2992" i_stop="2081" i_length="912">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2080" g_stop="1574" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="823" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1573" i_stop="1389" i_length="185">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1388" g_stop="1226" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="986" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1225" i_stop="1070" i_length="156">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1069" g_stop="532" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="987" r_stop="1524" r_length="538" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1525" polyA_stop="1548"/>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U324700" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1525</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3571" e_stop="3489"/>
          <exon e_start="3226" e_stop="2993"/>
          <exon e_start="2080" e_stop="1574"/>
          <exon e_start="1388" e_stop="1226"/>
          <exon e_start="1069" e_stop="532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGCTCACTCCAGTCAATTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAGGTAAAAGAGTGAAAACCCCAAACTACTCTTTTATGCAACTACATTATGCCATCGTGGAGCATGTTTGGAAATACCGAAGAAGGATTACAAGTTCCATATGTCATTCACTTTTTTCATATTCGTTTATCTATGGACTATGAATTAAATAACCGGAAGAATGGACAAAAATTGACCTCATTATTTTGTCATGAATCTGAGATATAACTCCTTCCTCGTCAAAAATAGAAAAACATGTTTCAAGACTTCATCATTTCTTTTACAGGTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAGAAAGGATTTTGAGGTATTTATCCCTTTCTTTTAATCCATATTAGAAATTAAAGTGACTACTACTAGGTACTAACTGATTACTTCTGTAAATAAGACAACAACAACAACATATGAGCATTTATAAGTTTGGCCTGCCATCCAGACTTATTCATAACTGGTTGAGTGCCTTTTGAGGCATTGTTTTGATACTCTATAGTACATATTGGATGTTTGTTTCTGTAGAATGTAAAAAGATAAAATATCTTCTATATCTATCCTCTATAGAATGGATATTAGTCTCTGTAGAATGAAAAAAATTACTATATTTTCTCTCTATCCTTTATTTCATTGGTGCTAGTGCTGCTGTATTTCATTATTTTAGCTATGGTCTTAAAACATAGGAGAGCTAAAACCAAGCATCCATAATATGTCCAACTTAGCATATGTACGAGGGGACTTATGTGAAAACCACTGGACCTCATTTTGCTTTGTGGTAGATTTAAGAAATGAATTACTTTTTGGTGTGGCTAAAACCACTTCAGTGAAATTGCTTTGGTCCTCAAACTTAGGCAGCATGCCAAAAGAGAGATTGCAACTACAGACTAGGTGTAAAGTTAAGAAGTATTTGAAAATCAAGTGCTTAGAGTTTGAATTGTATACTGGGCTTAAATTTGAAGATGATACTTTTACTTAGATTTGATGCACTTGAGCCGAAGATTTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGACTGCGTACACTCTACTCTCCCCTGACCCCACTTAGTGGGATTTCAGTAGGTATGTTATTGTTGTACTGGGAAAGTATGCTCCACGGCTACCACACTCCCATTTCCAGATTGCCAATAACTTGTCCTGTTCTGTGGATAAATTCTTATTTGTTTTCTGACTATTATTTTTACCGACATCTCATAGGATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAGGTGGGTAATTATATAAGGGTATCTCTGTTTGCTCAACTCGCAAAATAATTCATAGCCTAGTCATTGCTATGTAATTTACTTTCTCGCTGTTTTTCCAAATAAAATATTTTGGGTCTTACTCTCCCATATATAGTGCTCTAGGAGTGCCTGTTCTCATGCTGTGGAATGTGCACATTTTTTTGCAGATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAGGTATGGTCTCATTCAATCTCTTGCAAACTTGCTGTTTCAAGTGTCTGTCCATACTATCTTATTTACAAATGTTCTTCACTTCCTCTTTGGCTTCCGAGTGATTAAACTTTGTCGTCCTTGATATATTTGATGATTATGTTTACATCATCTCCACAGACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATCTTCTTCCTTTTTTTGGA</genome_strand>
        <mrna_strand>CCCGCTCACTCCCCT-TTTTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAG......................................................................................................................................................................................................................................................................GTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAAAAAGGATTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAG.........................................................................................................................................................................................ATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAG............................................................................................................................................................ACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAAAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATTTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATTTTTTTCCTTTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324388" ref_strand="-" ref_description="SGN-U324388        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr3:8631613-8636052 REVERSE | Aliases: F14O13.8(evalue: 2e-110, score=396) genbank/nr: gi|30687254|ref|NP_189032.2| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana](evalue: 2e-108, score=396)">
      <seq>ggaccaaatttagggttagcatattttgaagctacagttatatggctgaccggaacaattcatcggcgattacagtgacggcagcggtgaaaccgatatgggcgaagcaagcggaagaagcgaagcttaagagcgaagcagagaaagatgcggctgcgaaagctgctttcgaagccacttttaagaacgtcgaaacttcagccactgcggccgcggccgcatccgacagtgacttagacgatgaggaatacgagcagaagaggcttgcggcgaagccgatcggtccggttgaccctataaaatgcacagccgctggcactggaatcgccggtggaacagcgtgtgctccgtcaactttcaccgttgtgacgaaggattctgatggtcgtaaggtaccacatggtggggcgcaggttaagattagagtttcacctggtgttggagttggaggatcagatttggaagggattgtgaaggatatgggtgatgggacatacacagtgagttatattgttcagaagagaggaaattatatggtgaatgttgaatgtaatgggaagcctatcatgggtagtcctttccctgttttcttcagcacaggcagtacgactggcgggctattgggtatagtaccatcagccacatttccaaatatggtcaaccagaacatgcctaatatgccaaactattctggttctgtatccggggcagttccaggattgcttgggatgataccaggtattgttcctggagcttctggaggtgtcgttttacctggaattggagcatctattggggaagtttgccgagagtacctttatggacgatgcgcaaaaagtgattgcaaattcaatcacccccctcacaatcttctaatgactgctctagctgcgaccaccagtatgggaacacttagtcaagtgcccatggcaccttctgcggctgctatggctgctgctcaggctattgttgctgcacaagctcttcaagcgcatgctgctcaggcacaagcacagtctggaaaagattcgtctggtgacaaagatggtaaggctgaatcccttaaaagaactttgcaagtcagcaatctcagcccacttctgacagtggatcagttgaaacagctgtttggtttctgtggtgcaatcattgattgtagcattactgaatccaaacattttgcttacatcgaatactcaaaacccgaagaagcaactgctgctttagcattgaacaatatagaagttggtggtcgccccttaaatgttgaaatggcaaaacaacttcctccgaaggcagctgtcttaaattcatcaatgggctcttcttctttgcccttgatgatgcagcaagcggtagcaatgcagcagatgcagttccagcaagccttattaatgcagcaagctatgactgaacaacaagctgctaatcgagctgcaaccatgaaaactgctacagatttggctgccgcaagagctgcagaaataagcaagatgttgaaagcaaacggcctggtttctgaagataaggaaactgatgacaaggctaagtatgtcacctgagctatttttcttatatgcttataatcagtgttttgggaagcgagaagcggaaaaaagcgacgagggcttgcttcacagaagcgagaagcgaagcgcgcgctttttttttaaaaagcgacatttaatataaaaataaaaaaatattaaataactaaaaagaggtaatatagtcttagattgaaagaaattactcaggcaaaaatactcacaagtcataacatatagaacaaaaaatcaaaaacataattaaatcacaaaatactacaaacaaaaggaagtttcagaaaataataaaaaaaggctgctagcatacacactgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="21400" stop="26171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21699" g_stop="22298" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22299" i_stop="24174" i_length="1876">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24175" g_stop="24609" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="1035" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24610" i_stop="25006" i_length="397">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25007" g_stop="25874" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1898" r_length="863" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U324388" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1903</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324388" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21699" e_stop="22298"/>
          <exon e_start="24175" e_stop="24609"/>
          <exon e_start="25007" e_stop="25874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCAAATTTAGGGTTAGCATATTTTGAAGCTACAGTTATATGGCTGACCGGAACAATTCATCGGCGATTACAGTGACGGCAGCGGTGAAACCGATATGGGCGAAGCAAGCGGAAGAAGCGAAGCTTAAGAGCGAAGCAGAGAAAGATGCGGCTGCGAAAGCTGCTTTCGAAGCCACTTTTAAGAACGTCGAAACTTCAGCCACTGCGGCCGCGGCCGCATCCGACAGTGACTTAGACGATGAGGAATACGAGCAGAAGAGGCTTGCGGCGAAGCCGATCGGTCCGGTTGACCCTATAAAATGCACAGCCGCTGGCACTGGAATCGCCGGTGGAACAGCGTGTGCTCCGTCAACTTTCACCGTTGTGACGAAGGATTCTGATGGTCGTAAGGTACCACATGGTGGGGCGCAGGTTAAGATTAGAGTTTCACCTGGTGTTGGAGTTGGAGGATCAGATTTGGAAGGGATTGTGAAGGATATGGGTGATGGGACATACACAGTGAGTTATATTGTTCAGAAGAGAGGAAATTATATGGTGAATGTTGAATGTAATGGGAAGCCTATCATGGGTAGTCCTTTCCCTGTTTTCTTCAGCACAGGTTTGCTTTTTTCTTCTCTTGGAGTGGTGAATTTCATACAGATTTGTACTTTCTAGGTCAGGTAGCTTAGCTTAGTGAAGACTAAAGAATTTTGGGAAGCAAAAGATGCTAAAATTAGCTGGGATGAAGGTCTAGTGACAATGGCAACATACATTAGGTTCAGTAGTATACGCCAAATCTTTTTAGTTCGTCTAAAAAATTGTTGGTTAGTAATAATTGTACTGATACTCTAGTATTAAAGAAATGTGTATTGTTTAACATTAGAATTGAATGTGTTCCAATGCAGCAAAATGGATAGCTTTTTATTTAGAGGGCCTATATTGTTCAAAAAGCTGTATACATTATGTAAAGATTTCTTTAATTTTTTTAGAGAAGAATTGGGTTTAAGAAGTAAAGATGCTCTTTTTAGAATGATAACATTTATCTAAACTCTAAAATACTTTTCACCCGAGTCTGATTTGACTTCTAAAAGCTGGATCAAACTGAGTATGTGATTGATTTGTGTTAGAGCATAATTGTTGTCTGTAGTAATGTGGACAGTTGATTTGATTGTAAATTTTCAAATGAGTCTATGATATTGGCTTTATTAAATGGGTTGCATCTTTTTAAAGGCTTGCTTGAATTGTTTAACCTAAACTAATCAATTTTACTAATCAGAATTAGTATTTGGTTATCGTACTATAAACAGGTGTTTTTTTTTAAAGTATCTAGTATCAATGGGATTGCTGAGATGAGGTCCCATTTGATTGCGGTTGGTCGATTCTTATTTTTTCATATGCTATTTAGTTGGATTGTCTTGATAATTTCTGTTGTTATAGTATGGCTAGTGGAGTTCCTTTAGTTGTTGTTTTGGACTTAAAACATCAGAATCAATAGGAGCCCCCTCAAAAGATATTGGGGCTCCTATTTAATTGTGATGATTTAAAGTCCATTTATGTTGTCCCAAGTTTAATGGGGCTCTTTGGTGTTAGATATGATATTCTACTTAGTAAGACGTAGCACCTCAATGTAATTGTGGAATATATTATTTCACCTTTGGAACAATTTTCACCACCCATCAGTAGTGTAGAATTGTATCTGCTGCACCTCTCCACCCCAAATAGAATGTTGTCTTTTTGTGTGTTTGCTTTTGTGCTTTCTGTGAGTATGTATATCTACTCTTTTTTATCCATGCATTTGTCCTTTGTCAACATTTCTAAATTCCTGTTTAAGCTAAAACTTTATTAAAAATTCATTCCATGATAACCTTACCACTACCAATTATTCAGAATATAAATTACTCAATTAGATGTCCCAAGTTGTTTTGGATATGGGTTTTTTATATGAAGGCAAGTAGAAAGCAGTCTAGGCATATCCATGACAGTTAAGATGATAACAAAGGTGTCAGCGTGGGTTTGGCTGAAGCAGAGATCATAAGTTGATGGTGCATCATAGCAGGAATGTGACTCAGTCTTTGATTTATTTCTTGGTTACCGTGGTTTAGTCACATCAAAGCCAAAAGACTTCATATACTGGCTAGAAACTTTCAAACTACTACCCCACCTGCTCTTTTCTCGAATAACTGTCACCATATTTTTTTTCTTTTTTTTAACATTCCTCCTGAATCTGTTTCAGAACTTATATATAAAATGTGGTACTGCTGTTCTCTTGTGCTTACTCGTATTTTTCTCTTTTTGTGTTGTTCTCATTGATAATATGATGTAGTTTTGAATGAGGAATGATATGGTTGACTTATAACATGGAACTGTAACAATATGTTAAATATTTTCCTTTTCAGTACATAGACATGATGAAGATGTACTCATGTTTTGGTTTACAAAATTCAACATTGTATTCTACATGTTAAAGAATTTAATTCTGTAATTGTATCATGCAGGCAGTACGACTGGCGGGCTATTGGGTATAGTACCATCAGCCACATTTCCAAATATGGTCAACCAGAACATGCCTAATATGCCAAACTATTCTGGTTCTGTATCCGGGGCAGTTCCAGGATTGCTTGGGATGATACCAGGTATTGTTCCTGGAGCTTCTGGAGGTGTCGTTTTACCTGGAATTGGAGCATCTATTGGGGAAGTTTGCCGAGAGTACCTTTATGGACGATGCGCAAAAAGTGATTGCAAATTCAATCACCCCCCTCACAATCTTCTAATGACTGCTCTAGCTGCGACCACCAGTATGGGAACACTTAGTCAAGTGCCCATGGCACCTTCTGCGGCTGCTATGGCTGCTGCTCAGGCTATTGTTGCTGCACAAGCTCTTCAAGCGCATGCTGCTCAGGCACAAGCACAGTCTGGAAAAGATTCGTCTGGTATTTCTAGCTCTCATTACTGTCTATATTCCTCCTATTTGTTGATTATTGCGAGTTATACTTTTTAAAATTTCCTTACTCCACTTGTACATTGATTCCTGAATTTTTTTTGCTACTTCTATCTCCCATCATTGCCTAATAAGTAATTTATATATTTTTTGTTACTGGGAACTGCTCATAAACTTTTCCTACTTAAGTTTCTTCAAACTATTTTGTTTCTATAACTTAAAGAGACCAGATAGGTTCTTACTACTTTCTCTTTGCTTCTTCCCCCAACCTACTCATCATAAAAGATGATGTGTAGAACTAAAAATGCATATTGACATTTCTGCTATGAATCCATGAGAGTGTACCTCATTCTACTTGTTTGTGCTATTTATGTTTCTTTATGTATCAGGTGACAAAGATGGTAAGGCTGAATCCCTTAAAAGAACTTTGCAAGTCAGCAATCTCAGCCCACTTCTGACAGTGGATCAGTTGAAACAGCTGTTTGGTTTCTGTGGTGCAATCATTGATTGTAGCATTACTGAATCCAAACATTTTGCTTACATCGAATACTCAAAACCCGAAGAAGCAACTGCTGCTTTAGCATTGAACAATATAGAAGTTGGTGGTCGCCCCTTAAATGTTGAAATGGCAAAACAACTTCCTCCGAAGGCAGCTGTCTTAAATTCATCAATGGGCTCTTCTTCTTTGCCCTTGATGATGCAGCAAGCGGTAGCAATGCAGCAGATGCAGTTCCAGCAAGCCTTATTAATGCAGCAAGCTATGACTGAACAACAAGCTGCTAATCGAGCTGCAACCATGAAAACTGCTACAGATTTGGCTGCCGCAAGAGCTGCAGAAATAAGCAAGATGTTGAAAGCAAACGGCCTGGTTTCTGAAGATAAGGAAACTGATGACAAGGCTAAGTATGTCACCTGAGCTATTTTTCTTATATGCTTATAATCAGTGTTTTGGGAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGAGAAGCGAAGCGCGCTTTTTTTTTAAAAAGCGACATTTAATATAAAAATAAAAAAATATTAAATAACTAAAAAGAGGTAATATAGTCTTAGATTGAAAGAAATTACTTAGGCAAAAATACTCACAAGTCATAACATATAAAGCAAAAAATCAAAAACATAATTAAATCACAAAATACTACAAACAAAAGGAAGTTTCAGAAAATAATAAAAAAAGGCTGCTAGTATACACACTGATCACAAAAAAAAACCA</genome_strand>
        <mrna_strand>GGACCAAATTTAGGGTTAGCATATTTTGAAGCTACAGTTATATGGCTGACCGGAACAATTCATCGGCGATTACAGTGACGGCAGCGGTGAAACCGATATGGGCGAAGCAAGCGGAAGAAGCGAAGCTTAAGAGCGAAGCAGAGAAAGATGCGGCTGCGAAAGCTGCTTTCGAAGCCACTTTTAAGAACGTCGAAACTTCAGCCACTGCGGCCGCGGCCGCATCCGACAGTGACTTAGACGATGAGGAATACGAGCAGAAGAGGCTTGCGGCGAAGCCGATCGGTCCGGTTGACCCTATAAAATGCACAGCCGCTGGCACTGGAATCGCCGGTGGAACAGCGTGTGCTCCGTCAACTTTCACCGTTGTGACGAAGGATTCTGATGGTCGTAAGGTACCACATGGTGGGGCGCAGGTTAAGATTAGAGTTTCACCTGGTGTTGGAGTTGGAGGATCAGATTTGGAAGGGATTGTGAAGGATATGGGTGATGGGACATACACAGTGAGTTATATTGTTCAGAAGAGAGGAAATTATATGGTGAATGTTGAATGTAATGGGAAGCCTATCATGGGTAGTCCTTTCCCTGTTTTCTTCAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTACGACTGGCGGGCTATTGGGTATAGTACCATCAGCCACATTTCCAAATATGGTCAACCAGAACATGCCTAATATGCCAAACTATTCTGGTTCTGTATCCGGGGCAGTTCCAGGATTGCTTGGGATGATACCAGGTATTGTTCCTGGAGCTTCTGGAGGTGTCGTTTTACCTGGAATTGGAGCATCTATTGGGGAAGTTTGCCGAGAGTACCTTTATGGACGATGCGCAAAAAGTGATTGCAAATTCAATCACCCCCCTCACAATCTTCTAATGACTGCTCTAGCTGCGACCACCAGTATGGGAACACTTAGTCAAGTGCCCATGGCACCTTCTGCGGCTGCTATGGCTGCTGCTCAGGCTATTGTTGCTGCACAAGCTCTTCAAGCGCATGCTGCTCAGGCACAAGCACAGTCTGGAAAAGATTCGTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAAGATGGTAAGGCTGAATCCCTTAAAAGAACTTTGCAAGTCAGCAATCTCAGCCCACTTCTGACAGTGGATCAGTTGAAACAGCTGTTTGGTTTCTGTGGTGCAATCATTGATTGTAGCATTACTGAATCCAAACATTTTGCTTACATCGAATACTCAAAACCCGAAGAAGCAACTGCTGCTTTAGCATTGAACAATATAGAAGTTGGTGGTCGCCCCTTAAATGTTGAAATGGCAAAACAACTTCCTCCGAAGGCAGCTGTCTTAAATTCATCAATGGGCTCTTCTTCTTTGCCCTTGATGATGCAGCAAGCGGTAGCAATGCAGCAGATGCAGTTCCAGCAAGCCTTATTAATGCAGCAAGCTATGACTGAACAACAAGCTGCTAATCGAGCTGCAACCATGAAAACTGCTACAGATTTGGCTGCCGCAAGAGCTGCAGAAATAAGCAAGATGTTGAAAGCAAACGGCCTGGTTTCTGAAGATAAGGAAACTGATGACAAGGCTAAGTATGTCACCTGAGCTATTTTTCTTATATGCTTATAATCAGTGTTTTGGGAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGC--GAAGC---GCGCGCTTTTTTTTTAAAAAGCGACATTTAATATAAAAATAAAAAAATATTAAATAACTAAAAAGAGGTAATATAGTCTTAGATTGAAAGAAATTACTCAGGCAAAAATACTCACAAGTCATAACATATAGAACAAAAAATCAAAAACATAATTAAATCACAAAATACTACAAACAAAAGGAAGTTTCAGAAAATAATAAAAAAAGGCTGCTAGCATACACACTGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319268" ref_strand="+" ref_description="SGN-U319268        Tomato 200607 #1 [12 ESTs aligned]">
      <seq>tgaacatagacgaaaaagtaggtcatccccaaaagatggtgaaagaaaatcaaaatatagcaggcggtccagatcaaagtctgctgaatttagggaccagtctgatgataagctagaacgaagcaagggtgagaaaaccaggcagaaggatcaaagaaggtcagcatcaccacaggttgatgaggatgcacagaagaaaatgtcaccagaagttgtggaagaaagcaagtcaaagcagagaagagcctccaggtccagatctccagaagagaagcatctttctagcagaagcagagaagagaaaagaaagcatcatgctagaaggcgctccaggtcaaggtccaaatctcctgaagagaaagttcactcaagtgataaattagacagaaataaaggagataaacgaaagcatcgaagtagaaggcactcaaagtcaaggtccagatctcctgaagaaaaacaacattcaagtgctaaattggaaaggagcagaaaagagaaatcaaagagtcgaagtaaaaggcgctccaggtcaagatctgtcgatgagaagcagcatggaactaaacagtcagcaagccattctgacagccgacgatcaaagcaaagagcacgttctagatcaaattcttctgaaagtaggcatggatcaggtcaagatgaaaccttaaaggatgaagggagaggtcataggggtcaccagaaaagatcgaggcaggatgacaataatcatggaacaactgagattagcttgatggaagaagagggaatgtaaaccagtgaccgatagcttccaattcaaagagttctgaatctatgggttatggcttgtgatactcaattgtgtgaacattttattttaccattgcagaaaacatgagaagttttgaggaagcatgatgtcctggaagatcgtgatcccaacatagattgacccgatgatcaagaaagatctgttagactgaattaattgcagtttgtatgacaaaaacgcctatttttgcttcttttgcaggtccttcatggaacataaccagaaagtgaagtagcattagttgaaaggttgagtgtcaagtttgtgccatcttggatgaactctactgagtttcttgtgaactactttttgagctcatgtcttgggactggttcttgttggcgctttatcaattgaatggacaaagttatatctgattgtatttgaaggcaggctgctattaaggttaatgtaaccagatgttgctgagatgattgtgcatgatgctccctgaatcgagcatgaaacagatactcatatctgttctttaattggtggaactcaattgttccataacaggtggtgctggatgtatgggactgagagctgtatcctgttgtcaatctagatgtggttgatgtcacacacttataatttgcttcccttcccccttcctttttcatttacattcatgtttacccttccccgtctttcatctctgcttctctcccttgttttcctctttttgttttttggggtggttggaggttctataaggagtagtatgactagctaaatggcacaagcagcaaggcgaggaaacattaattttggctggtgatttgacaatgtatttttgctaggatttttttgtttggacaaggattatagctcaagagtagaatcttcgtttaggtgtgtatgggccatctatgaaataaaaatcagcagatgtttttcagtagtcttcttcctttgcatgttaaaggttaaatatacccacataatgtttatcatccttatttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="27276" stop="30884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27576" g_stop="28708" g_length="1133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1133" r_length="1133" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28709" i_stop="29101" i_length="393">
            <donor d_prob="0.233" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29102" g_stop="29171" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1134" r_stop="1203" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29172" i_stop="29386" i_length="215">
            <donor d_prob="0.166" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29387" g_stop="29516" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1204" r_stop="1333" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29517" i_stop="30130" i_length="614">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30131" g_stop="30579" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1782" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1783" polyA_stop="1797"/>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U319268" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1782</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27576" e_stop="28708"/>
          <exon e_start="29102" e_stop="29171"/>
          <exon e_start="29387" e_stop="29516"/>
          <exon e_start="30131" e_stop="30579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACATAGACGAAAAAGTAGGTCATCCCCAAAAGATGGTGAAAGAAAATCAAAATATAGCAGGCGGTCCAGATCAAAGTCTGCTGAATTTAGGGACCAGTCTGATGATAAGCTAGAACGAAGCAAGGGTGAGAAAACCAGGCAGAAGGATCAAAGAAGGTCAGCATCACCACAGGTTGATGAGGATGCACAGAAGAAAATGTCACCAGAAGTTGTGGAAGAAAGCAAGTCAAAGCAGAGAAGAGCCTCCAGGTCCAGATCTCCAGAAGAGAAGCATCTTTCTAGCAGAAGCAGAGAAGAGAAAAGAAAGCATCATGCTAGAAGGCGCTCCAGGTCAAGGTCCAAATCTCCTGAAGAGAAAGTTCACTCAAGTGATAAATTAGACAGAAATAAAGGAGATAAACGAAAGCATCGAAGTAGAAGGCACTCAAAGTCAAGGTCCAGATCTCCTGAAGAAAAACAACATTCAAGTGCTAAATTGGAAAGGAGCAGAAAAGAGAAATCAAAGAGTCGAAGTAAAAGGCGCTCCAGGTCAAGATCTGTCGATGAGAAGCAGCATGGAACTAAACAGTCAGCAAGCCATTCTGACAGCCGACGATCAAAGCAAAGAGCACGTTCTAGATCAAATTCTTCTGAAAGTAGGCATGGATCAGGTCAAGATGAAACCTTAAAGGATGAAGGGAGAGGTCATAGGGGTCACCAGAAAAGATCGAGGCAGGATGACAATAATCATGGAACAACTGAGATTAGCTTGATGGAAGAAGAGGGAATGTAAACCAGTGACCGATAGCTTCCAATTCAAAGAGTTCTGAATCTATGGGTTATGGCTTGTGATACTCAATTGTGTGAACATTTTATTTTACCATTGCAGAAAACATGAGAAGTTTTGAGGAAGCATGATGTCCTGGAAGATCGTGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCAGTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTGCTGAGTTTCTTGTGAACTACTTTTTGAGCTCATGTATGGTGAACTTTTACCTCTGTCAGTAGGTAGTAATTTCTTAATTGTATGTCTATTTGAGGATTTTAATTACCCCTTGTCCTTCTAGTAATCTCAATATTGTGAAGGAAGGTATATATATCAACTATCCTTTCTTGTGAGGGAATTGTGCCTTCCACTGAAGAATTTGAATGTCCTTGAGCATTATGTTCTCATATCCTGTACTCATTAACTGATGTGAACTAATGATAGGGTAGTTTCATAAAGCTTTCTAATTAAGTAGCTTAGTCGTCTTGTGAATCTATTATACTTTCTTTGCATGATGAGTTAATTATGTTGGTAACTCGGTAGGAGGCTCCAATTTTTTTTACATTTGGTGGCTTGGTGGGCCTGTTAAACTCCAAAAACATGCAGGTCTTGGGACTGGTTCTTGTTGGCGCTTTATCAATTGAATGGACAAAGTTATATCTGATTGTATTTGAAGGTATGCAATTGAAATTTTTGGTTGTTTGAATGGGAGCGCATTTGCTGCTTTTGGAACAATTATTTTAAGAATGTCGGCTGAAAATTGTTGGGATGAAGAAATAAGGTTGTTAATCTTCACATATTTTGCATTGTTCCTTTCCTCATCTTTTCTTCTTTTTTCCATTTTCTCTTTTTTTTTTCCTTTTTTCTTTCTTCTTGAAAATGTTTGATTAGGCAGGCTGCTATTAAGGTTAATGTAACCAGATGTTGCTGAGATGATTGTGCATGATGCTCCCTGAATCGAGCATGAAACAGATACTCATATCTGTTCTTTAATTGGTGGAACTCAATTGTTCCATAACAGGTAAAATCTTATTGAATCCACTAGTTTCTAGTTTTTATCCTTGCAAACGGAGTAATGGAGGACATGATGGTTATTGCTCAACACCCCTAGTTCACACAATTTTTTAGTAGCCAAAATTGTCTAACTGATTAACAGGTGGTTTATCTGGCCTCTTGCTTATATTTTATTCGGCTACATGTCCTCCGGGGTTACAGTAATTAAAGTAATTGGAACCTCTTGCAGTTGCTTCAAATATTAGGAAAAAATATTCCACTTGAGAAAAACAATAGGCATTAAGAAAATAGGAGTGCTTATTAAGTCATTTATTTTGTGTGTGTGGGGGGGGGGGGGGTTATGTATGAAATCCACATTTGCACTGTATGCTGTACTTGTTTGTAGCATGCTATGACATGTAAAAGCTGCATACGTTGTATGAAATAACCTAATCTGAGGAATTCCTTGATCTGTATCATATATCTGATTGTGGAAATTCTCGTATTACCCTTATTCTTTATATTGACTCCTATCTTTCATGGTGGCTACCTTATTGTCTTGTGAAGGCATTCTTTGTTTACTGTCTGAAGAACCTCTGCCCATCTTTTTTTTTTTTTTTGGGTTTTCCGTTTTTTTTCTAGGTGGTGCTGGATGTATGGGACTGAGAGCTGTATCCTGTTGTCAATCTAGATGTGGTTGATGTCACACACTTATAATTTGCTTCCCTTCCCCCTTCCTTTTTCATTTACATTCATGTTTACCCTTCCCCGTCTTTCATCTCTGCTTCTCTCCCTTGTTTTCCTCTTTTTGTTTTTTGGGGTGGTTGGAGGTTCTATAAGGAGTAGTATGACTAGCTAAATGGCACAAGCAGCAAGGCGAGGAAACATTAATTTTGGCTGGTGATTTGACAATGTATTTTTGCTAGGATTTTTTTGTTTGGACAAGGATTATAGCTCAAGAGTAGAATCTTCGTTTAGGTGTGTATGGGCCATCTATGAAATAAAAATCAGCAGATGTTTTTCAGTAGTCTTCTTCCTTTGCATGTTAAAGGTTAAATATACCCACATAATGTTTATCATCCTTATTTCCC</genome_strand>
        <mrna_strand>TGAACATAGACGAAAAAGTAGGTCATCCCCAAAAGATGGTGAAAGAAAATCAAAATATAGCAGGCGGTCCAGATCAAAGTCTGCTGAATTTAGGGACCAGTCTGATGATAAGCTAGAACGAAGCAAGGGTGAGAAAACCAGGCAGAAGGATCAAAGAAGGTCAGCATCACCACAGGTTGATGAGGATGCACAGAAGAAAATGTCACCAGAAGTTGTGGAAGAAAGCAAGTCAAAGCAGAGAAGAGCCTCCAGGTCCAGATCTCCAGAAGAGAAGCATCTTTCTAGCAGAAGCAGAGAAGAGAAAAGAAAGCATCATGCTAGAAGGCGCTCCAGGTCAAGGTCCAAATCTCCTGAAGAGAAAGTTCACTCAAGTGATAAATTAGACAGAAATAAAGGAGATAAACGAAAGCATCGAAGTAGAAGGCACTCAAAGTCAAGGTCCAGATCTCCTGAAGAAAAACAACATTCAAGTGCTAAATTGGAAAGGAGCAGAAAAGAGAAATCAAAGAGTCGAAGTAAAAGGCGCTCCAGGTCAAGATCTGTCGATGAGAAGCAGCATGGAACTAAACAGTCAGCAAGCCATTCTGACAGCCGACGATCAAAGCAAAGAGCACGTTCTAGATCAAATTCTTCTGAAAGTAGGCATGGATCAGGTCAAGATGAAACCTTAAAGGATGAAGGGAGAGGTCATAGGGGTCACCAGAAAAGATCGAGGCAGGATGACAATAATCATGGAACAACTGAGATTAGCTTGATGGAAGAAGAGGGAATGTAAACCAGTGACCGATAGCTTCCAATTCAAAGAGTTCTGAATCTATGGGTTATGGCTTGTGATACTCAATTGTGTGAACATTTTATTTTACCATTGCAGAAAACATGAGAAGTTTTGAGGAAGCATGATGTCCTGGAAGATCGTGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCAGTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTACTGAGTTTCTTGTGAACTACTTTTTGAGCTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGGACTGGTTCTTGTTGGCGCTTTATCAATTGAATGGACAAAGTTATATCTGATTGTATTTGAAG.......................................................................................................................................................................................................................GCAGGCTGCTATTAAGGTTAATGTAACCAGATGTTGCTGAGATGATTGTGCATGATGCTCCCTGAATCGAGCATGAAACAGATACTCATATCTGTTCTTTAATTGGTGGAACTCAATTGTTCCATAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTGGATGTATGGGACTGAGAGCTGTATCCTGTTGTCAATCTAGATGTGGTTGATGTCACACACTTATAATTTGCTTCCCTTCCCCCTTCCTTTTTCATTTACATTCATGTTTACCCTTCCCCGTCTTTCATCTCTGCTTCTCTCCCTTGTTTTCCTCTTTTTGTTTTTTGGGGTGGTTGGAGGTTCTATAAGGAGTAGTATGACTAGCTAAATGGCACAAGCAGCAAGGCGAGGAAACATTAATTTTGGCTGGTGATTTGACAATGTATTTTTGCTAGGATTTTTTTGTTTGGACAAGGATTATAGCTCAAGAGTAGAATCTTCGTTTAGGTGTGTATGGGCCATCTATGAAATAAAAATCAGCAGATGTTTTTCAGTAGTCTTCTTCCTTTGCATGTTAAAGGTTAAATATACCCACATAATGTTTATCATCCTTATTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336775" ref_strand="-" ref_description="SGN-U336775        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgatcccaacatagattgacccgatgatcaagaaagatctgttagactgaattaattgccctttgtatgacaaaaacgcctatttttgcttcttttgcaggtccttcatggaacataaccagaaagtgaagtagcattagttgaaaggttgagtgtcaagtttgtgccatcttggatgaactctgctgagtttcttgtgaactactttttgagctcatgtatggtgaacttttacctctgtcagtaggtcgtaatttcttaattgtatgtctatttgaggattttaattaccccttatccttttagtaatctcagtattgtgaaggaaggtatatatatcaactatcctttcttgtgagggaattgtgccttccactgaagaatttgaatgtccttgagcattatgttctcatatcctgtaatcattaactgatgtgaactaatgataggtagtttcataaagctttcttattaagtagcttagtcgtcttgtgaaaaaaaaaaaacaaaaactcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="28191" stop="29287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28491" g_stop="28986" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="512"/>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U336775" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28491" e_stop="28986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCAGTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTGCTGAGTTTCTTGTGAACTACTTTTTGAGCTCATGTATGGTGAACTTTTACCTCTGTCAGTAGGTAGTAATTTCTTAATTGTATGTCTATTTGAGGATTTTAATTACCCCTTGTCCTTCTAGTAATCTCAATATTGTGAAGGAAGGTATATATATCAACTATCCTTTCTTGTGAGGGAATTGTGCCTTCCACTGAAGAATTTGAATGTCCTTGAGCATTATGTTCTCATATCCTGTACTCATTAACTGATGTGAACTAATGATAGGGTAGTTTCATAAAGCTTTCTAATTAAGTAGCTTAGTCGTCTTGTGA</genome_strand>
        <mrna_strand>TGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCCCTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTGCTGAGTTTCTTGTGAACTACTTTTTGAGCTCATGTATGGTGAACTTTTACCTCTGTCAGTAGGTCGTAATTTCTTAATTGTATGTCTATTTGAGGATTTTAATTACCCCTTATCCTTTTAGTAATCTCAGTATTGTGAAGGAAGGTATATATATCAACTATCCTTTCTTGTGAGGGAATTGTGCCTTCCACTGAAGAATTTGAATGTCCTTGAGCATTATGTTCTCATATCCTGTAATCATTAACTGATGTGAACTAATGATA-GGTAGTTTCATAAAGCTTTCTTATTAAGTAGCTTAGTCGTCTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336776" ref_strand="+" ref_description="SGN-U336776        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttttttttttaagattggatagaagagatatataccttccttaacaatattgagattactagaaggacaaggggtaattaaaaccctcaaattgacattcatttaagaaattactacctactgactgaggtaaaagttcaccatacatgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="70772" stop="28400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30498" g_stop="30479" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30478" i_stop="28845" i_length="1634">
            <donor d_prob="0.745" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28844" g_stop="28700" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="165" r_length="145" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U336776" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30498" e_stop="30479"/>
          <exon e_start="28844" e_stop="28700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTATTTCATAGATGGCCCATACACACCTAAACGAAGATTCTACTCTTGAGCTATAATCCTTGTCCAAACAAAAAAATCCTAGCAAAAATACATTGTCAAATCACCAGCCAAAATTAATGTTTCCTCGCCTTGCTGCTTGTGCCATTTAGCTAGTCATACTACTCCTTATAGAACCTCCAACCACCCCAAAAAACAAAAAGAGGAAAACAAGGGAGAGAAGCAGAGATGAAAGACGGGGAAGGGTAAACATGAATGTAAATGAAAAAGGAAGGGGGAAGGGAAGCAAATTATAAGTGTGTGACATCAACCACATCTAGATTGACAACAGGATACAGCTCTCAGTCCCATACATCCAGCACCACCTAGAAAAAAAACGGAAAACCCAAAAAAAAAAAAAAAGATGGGCAGAGGTTCTTCAGACAGTAAACAAAGAATGCCTTCACAAGACAATAAGGTAGCCACCATGAAAGATAGGAGTCAATATAAAGAATAAGGGTAATACGAGAATTTCCACAATCAGATATATGATACAGATCAAGGAATTCCTCAGATTAGGTTATTTCATACAACGTATGCAGCTTTTACATGTCATAGCATGCTACAAACAAGTACAGCATACAGTGCAAATGTGGATTTCATACATAACCCCCCCCCCCCCCACACACACAAAATAAATGACTTAATAAGCACTCCTATTTTCTTAATGCCTATTGTTTTTCTCAAGTGGAATATTTTTTCCTAATATTTGAAGCAACTGCAAGAGGTTCCAATTACTTTAATTACTGTAACCCCGGAGGACATGTAGCCGAATAAAATATAAGCAAGAGGCCAGATAAACCACCTGTTAATCAGTTAGACAATTTTGGCTACTAAAAAATTGTGTGAACTAGGGGTGTTGAGCAATAACCATCATGTCCTCCATTACTCCGTTTGCAAGGATAAAAACTAGAAACTAGTGGATTCAATAAGATTTTACCTGTTATGGAACAATTGAGTTCCACCAATTAAAGAACAGATATGAGTATCTGTTTCATGCTCGATTCAGGGAGCATCATGCACAATCATCTCAGCAACATCTGGTTACATTAACCTTAATAGCAGCCTGCCTAATCAAACATTTTCAAGAAGAAAGAAAAAAGGAAAAAAAAAAGAGAAAATGGAAAAAAGAAGAAAAGATGAGGAAAGGAACAATGCAAAATATGTGAAGATTAACAACCTTATTTCTTCATCCCAACAATTTTCAGCCGACATTCTTAAAATAATTGTTCCAAAAGCAGCAAATGCGCTCCCATTCAAACAACCAAAAATTTCAATTGCATACCTTCAAATACAATCAGATATAACTTTGTCCATTCAATTGATAAAGCGCCAACAAGAACCAGTCCCAAGACCTGCATGTTTTTGGAGTTTAACAGGCCCACCAAGCCACCAAATGTAAAAAAAATTGGAGCCTCCTACCGAGTTACCAACATAATTAACTCATCATGCAAAGAAAGTATAATAGATTCACAAGACGACTAAGCTACTTAATTAGAAAGCTTTATGAAACTACCCTATCATTAGTTCACATCAGTTAATGAGTACAGGATATGAGAACATAATGCTCAAGGACATTCAAATTCTTCAGTGGAAGGCACAATTCCCTCACAAGAAAGGATAGTTGATATATATACCTTCCTTCACAATATTGAGATTACTAGAAGGACAAGGGGTAATTAAAATCCTCAAATAGACATACAATTAAGAAATTACTACCTACTGACAGAGGTAAAAGTTCACCATACATGAGCTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGGATAGAAGAGATATATACCTTCCTTAACAATATTGAGATTACTAGAAGGACAAGGGGTAATTAAAACCCTCAAATTGACATTCATTTAAGAAATTACTACCTACTGACTGAGGTAAAAGTTCACCATACATGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319022" ref_strand="+" ref_description="SGN-U319022        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT4G13830.2 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein (J20), identical to DnaJ-like protein (Arabidopsis thaliana) GI:6691127; similar to SP:Q05646 Chaperone protein dnaJ Erysipelothrix rhusiopathiae, J11 protein (Arabidopsis thaliana) GI:9843641; contains Pfam profile PF00226 DnaJ domain | chr4:8011420-8012749 FORWARD | Aliases: None (evalue: 2e-45, score=179) genbank/nr: gi|15236355|ref|NP_193119.1| DnaJ protein family [Arabidopsis thaliana] gi|7485692|pir||T05252 hypothetical protein F18A5.220 - Arabidopsis thaliana gi|4455312|emb|CAB36847.1| DnaJ-like protein [Arabidopsis thaliana] gi|7268087|emb|CAB78425.1| DnaJ-like protein [Arabidopsis thaliana] gi|13877947|gb|AAK44051.1| putative DnaJ protein [Arabidopsis thaliana] gi|21280963|gb|AAM44977.1| putative DnaJ protein [Arabidopsis thaliana](evalue: 1e-43, score=179)">
      <seq>aagaaaaaaatgtatctaagaaccccaatagatcgtgtcctattttccccatcaaatccccaattttcaagaactcaaaaagtgtcttttagagtaaactcaaaacttaacaacaatgtgatagaaattagtgaatcaaaaagcttttatgagcttttgggtattcaagaaactgtttctttattagaaattaaacaagcgtacaaacaattagcaagaaagtaccacccagatgtttcacctccgggtcgggtcgaagaaaatacccaaaggtttattcgggttcaagaggcttatgagacattatcggatcctaaatcaagagatatgtatgacaaacatatgtctaaaggacttcattttgcattttctcctcgtagaaagtgccaaaatgatgagtcaatggagaacaccggtgaatggaagaatcgatggcattctcagctatcggagttgaaaagaagaaactcacacaaggactctggtaacaatatgtcatggggtgcacatatgcgtagacaaaggagtgaaacatcgttataacgaattatatagtttttatatattgcttatatataatttgaagtgtttggttaagcattgatgttataagtagtgtaacaactatatgtaagtgctgaccaaatataggtaactgtttgtacataagagttctttgaatcaagttgttatttttaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="32137" stop="110490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32437" g_stop="32835" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32836" i_stop="33651" i_length="816">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33652" g_stop="33951" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="699" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33952" i_stop="34317" i_length="366">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.342" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34318" g_stop="34337" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="719" r_length="20" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U319022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32437" e_stop="32835"/>
          <exon e_start="33652" e_stop="33951"/>
          <exon e_start="34318" e_stop="34337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAATGTATCTAAGAACCCCAATAGATCGTGTCCTATTTTCCCCATCAAATCCCCAATTTTCAAGAACTCAAAAAGTGTCTTTTAGAGTAAACTCAAAACTTAACAACAATGTGATAGAAATTAGTGAATCAAAAAGCTTTTATGAGCTTTTGGGTATTCAAGAAACTGTTTCTTTATTAGAAATTAAACAAGCGTACAAACAATTAGCAAGAAAGTACCACCCAGATGTTTCACCTCCGGGTCGGGTCGAAGAAAATACCCAAAGGTTTATTCGGGTTCAAGAGGCTTATGAGACATTATCGGATCCTAAATCAAGAGATATGTATGACAAACATATGTCTAAAGGACTTCATTTTGCATTTTCTCCTCGTAGAAAGTGCCAAAATGATGAGGTTGGTTTTTTATTTTTATTATTTGGATATTTGGGTGAATTAAAGTTTGTGTTTTTGAAATTTGTAAATTATTGTATTAAACATCTCCACTTTGAGTTGATTGATAACATAAACTCCTTATTGTGTTTTGTGGATATTGATGCTGATATGACAAGTAAAATTTTGGAGGTGTGTACTGGACGATTATTTTGAAAGTTAGAGTGTTTAAATAAGATGAGTTGATGTATCTGAATATGTATATTGTTAGCCGAGGGTAAAGTTTTCTTTTTTTTCTTTTGTTCGTGAGAAAATTTGTGGTAGTGGGGTTTTTTTTAAGTTTGAAATTGAATGGGGTTTGTTTAATTATCTTGTTCTAAGTCACCTAATTTTTGTGTGTTTGTATGTTTGATGTCTAATTTTGAGGGCAATTTTTCTTTAGTGTGATTGTTGACAATTAAGTTGTTTGGGCTCTCACTTTCGATATCGTACATGTTACTTTTGAAGAATCAGACATGCATCAGTTGACATTATTGAAGAGTTCAAGCAACATAAGTTGACAATACTCTGTTATTTTAATTCTCTAGAATTTGGTATACTAAATATTTTCGTGTAGAATATAGTAGGATATAGTTGTGTGAGTGAGAAGGTTGACAACAAGGTCTGAAATGCCATATACAACTTTATACAGCCTCTGCTACTGAAAATATATCGTTTGCTTATACAATATACACAGTTTTTTGCATTCATGTAATTGATATTTTTGTTGTTGTACAATGATATATCCGCGATATCTTCTATTTTCTTCACTGATATATGGTTTTTTTTATACACATTTAGTCAATGGAGAACACCGGTGAATGGAAGAATCGATGGCATTCTCAGCTATCGGAGTTGAAAAGAAGAAACTCACACAAGGACTCTGGTAACAATATGTCATGGGGTGCACATATGCGTAGACAAAGGAGTGAAACATCGTTATAACGAATTATATAGTTTTTATATATTGCTTATATATAATTTGAAGTGTTTGGTTAAGCATTGATGTTATAAGTAGTGTAACAACTATATGTAAGTGCTGACCAAATATAGGTAACTGTTTGTACATAAGAGTTCTTTGAATCAAGTTGTTATTTTTAACGATATCGCGCTATTTATGTTGTGAATGTACGTTGAGTATATGTCAAATCCCGTTGTTTTTTCTTTTAAGCAAACGATTGATGCAAATAGAGAGGTTTCTCTATTGATGTGTAGTTAGATTTTCGAATAAAAGGAAGAGTGGGAATAGATTTCTCTTCCCAATACTATGTAAAGAGTCGTCAATATGGATCAATCCAATTTTAATAAGCCCAGTCTAGTTGGGCTGTATAATTTATTGGCCCAACTTCTCATTTGAGGACCTTCCAAATGCTAGCCCAATCCAACACTACACGGCCCATGGTATGTTGGGTGTCTAACAAACCTTTCTTTCTTTCTTTCGTTCGCCACGATTTTTCTTACTAGCAGATAAAATTACTAATATCACA</genome_strand>
        <mrna_strand>AAGAAAAAAATGTATCTAAGAACCCCAATAGATCGTGTCCTATTTTCCCCATCAAATCCCCAATTTTCAAGAACTCAAAAAGTGTCTTTTAGAGTAAACTCAAAACTTAACAACAATGTGATAGAAATTAGTGAATCAAAAAGCTTTTATGAGCTTTTGGGTATTCAAGAAACTGTTTCTTTATTAGAAATTAAACAAGCGTACAAACAATTAGCAAGAAAGTACCACCCAGATGTTTCACCTCCGGGTCGGGTCGAAGAAAATACCCAAAGGTTTATTCGGGTTCAAGAGGCTTATGAGACATTATCGGATCCTAAATCAAGAGATATGTATGACAAACATATGTCTAAAGGACTTCATTTTGCATTTTCTCCTCGTAGAAAGTGCCAAAATGATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGGAGAACACCGGTGAATGGAAGAATCGATGGCATTCTCAGCTATCGGAGTTGAAAAGAAGAAACTCACACAAGGACTCTGGTAACAATATGTCATGGGGTGCACATATGCGTAGACAAAGGAGTGAAACATCGTTATAACGAATTATATAGTTTTTATATATTGCTTATATATAATTTGAAGTGTTTGGTTAAGCATTGATGTTATAAGTAGTGTAACAACTATATGTAAGTGCTGACCAAATATAGGTAACTGTTTGTACATAAGAGTTCTTTGAATCAAGTTGTTATTTTTAA..............................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338652" ref_strand="+" ref_description="SGN-U338652        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttagagaaccatatcgttattatttcaatagcacaaataaaataagttctcatgtaaaactttaataaatctagcaaaccaacaccacaattaaaccaaaataaactatgaaacaagaattgacccaaatacttcttattccaaccaatatgctattttgagactccgcctaagcgattacactgaacatgttgttgttgttcaagcaatagaccattcgttgtttagctcatttttcaacttcattatctcatccacgggcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="38916" stop="39787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39215" g_stop="39487" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="275" r_length="273" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U338652" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39215" e_stop="39487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTAATAGAGAAAAAGACCGTTATTATTTCAATAGCACAAATAAAATAAGTTCTAAAGTCCAACTTTAATAAATCTAGCAAACCAACACCACAATTAAACCAAAATAAACTATGAAACAAGAATTGAAACAAATACTTCTTATTCCAACCAATATGCTATTTTGAGACTCCGCCTAAGCGATTACACTGAACATGTTGTTGTTGTTCAAGCAATAGACCATTCGTTGTTTAGCTCATTTTTCAACTTCATTATCTCATCCACGGGCAAAGT</genome_strand>
        <mrna_strand>TTTTTTTTAGAGAACCATATCGTTATTATTTCAATAGCACAAATAAAATAAGTTCTCATGTAAAACTTTAATAAATCTAGCAAACCAACACCACAATTAAACCAAAATAAACTATGAAACAAGAATTGACCCAAATACTTCTTATTCCAACCAATATGCTATTTTGAGACTCCGCCTAAGCGATTACACTGAACATGTTGTTGTTGTTCAAGCAATAGACCATTCGTTGTTTAGCTCATTTTTCAACTTCATTATCTCATCCACGGGCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317542" ref_strand="+" ref_description="SGN-U317542        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | transferase family protein, low similarity to acetyl-CoA:benzylalcohol acetyltranferase (Clarkia concinna) GI:6166328; contains Pfam profile PF02458: Transferase family | chr4:8013889-8016482 REVERSE | Aliases: F18A5.230, F18A5_230(evalue: 2e-64, score=243) genbank/nr: gi|15236357|ref|NP_193120.1| transferase family [Arabidopsis thaliana] gi|7459578|pir||T05253 CER2 protein homolog F18A5.230 - Arabidopsis thaliana gi|4455313|emb|CAB36848.1| fatty acid elongase-like protein (cer2-like) [Arabidopsis thaliana] gi|7268088|emb|CAB78426.1| fatty acid elongase-like protein (cer2-like) [Arabidopsis thaliana] gi|17933317|gb|AAL48240.1| AT4g13840/F18A5_230 [Arabidopsis thaliana] gi|23308387|gb|AAN18163.1| At4g13840/F18A5_230 [Arabidopsis thaliana](evalue: 1e-62, score=243)">
      <seq>tcctctaatcccaataagaaaaaaataataataattccaaaaaatggtgtcttcaaaattagaagatggtctaatttacaacataaaattatcctcagttggaccagcaagagtaacaggacaagatgttgtttatgagccaagtaacatggatttggccatgaaattacattatttgagagggatttattactttgatagccaagcatttcaaggtgtcacaatttataaaataaaagaaccaatatttatttggttcaattatttttatatgactaatggtaggtttagaagggcagaatcagggagaccttacattaaatgtaatgattgtggtgctaggtttattgaagcacaatgtgataaaactttggatgaatggctagaaatgaaagatacttcacttgagaaattacttgtttctaatcaagttcttggtcctgaattggctttctcacctccagtcctcatacagcatactaaattcaaatgtggtggaatttcattgggcctaagttgggcccatgtacttggagatatattctcagcaactgaattttggaactttttgggtaaagtagttggtggataccaaccgccccgacccattaacttggcccattcattaaccaaagcaaactcaacagaaaccctacaaaaaattgtggaggatccactttccataaaacgggttgacccggttgaagatcattgggttgctaatgcaagttacaagttggagtcgttttcgatccatgttagtgcatccaaattgggccaattacaatcaagaatagggattcaaggcccatttgaatcactatgttctattatttggcagtccatttcaagaattagagatgggcctggcccaaaagttgtgaccatttgtaaaaagggtgaagaaaagaaagagggcggccttataggaaacacacaattaattggtgtggttaaggttgatgactcaattagagatgctaatcctagtgaattagcaaggttgattaaaaatgagatcatcgacgagcgattaaagatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="43308" stop="39405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43008" g_stop="42534" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42533" i_stop="40274" i_length="2260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40273" g_stop="39705" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="1044" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U317542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43008" e_stop="42534"/>
          <exon e_start="40273" e_stop="39705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAATCCCACTAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAGGTGTCACAATTTATAAAATAAAAGAACCAATATTTATTTGGTTCAATTATTTTTATATGACTAATGGTAGGTTTAGAAGGGCAGAATCAGGGAGACCTTATATTAAATGTAATGATTGTGGTGCTAGGTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAGGTATGTATACTCTTCTGGCTCGATTAATTTAAATTTATATCGAATAAGCTCATTAAAAAGATATACTGATATAGTGCTTCCTATCAAGAAGTTATTCATTTTCATGTCTCGGGTTTTATGTTTCATTTTTTTTCTCTTGCTCGGAGGAAGGGAAAGGGGGTATTTTTAGGGTTTAGGGGTATGATATGTTCGATAGGTTCACTAAGAAAATAATAAAACGCTTCTTATCAAGAGGTTTTTCATTTTCTGCTCGAAAGTGGGGGAAAGAGAGATGGTTTTAGGGATGGGGGGCGGTATGATTAGAATTTTAGAGATTTTCTTTAAGAAAAATCCTAGTGCTCTGATAAAATTCAAATAGAACTAGGACGGATTTTTGAAATGATATCCTTAATGACTGGGCTAATCACGAAATATGAGAAGTAGATGATTAAACATCAATTTTCATGTTTAGTTAATTGTTAAATCAATTAATTTAAATTCATATTTAAAACTATCAGTAAATAGAATAAAGTGTTTGTCAATCAATCAATACCTTTTTGTTAAAGATAAAGAGTCGATCAATTTAGATTTACGTCGGAAACAATTCAATAAATAAGATAAAAGTGTTTTTACTAAGACTCCTTTTTTTTCATTTTTAATTCTTAAACCTTGTACTTTTTGCTAAAAATAAAATTCCAAATACTCCACCACACCGGTGATTATAGACCTTAACTCTTTAATAACTTCAAATAAACATATACTCCAATTATTTCACCACCCAATTAGTTGCAATATTTCACCACCATATTAAAGATTTATGGTCGTGGCATCAATATTTCAATTAGTTGAGGTAGTTAAGTAATAAATGCACCTATAGATAGAGTTTCAAATTATATCTCAACAATAAAAATATTTTTTAACGGCATTTAATTCTTAATTATCGTTAAATATATGATTTTAGCTGCAATTGTTACTCTTTGTACATGTCCCTAAAGTCTTTAGCGACATTGGTTCTAATGACACTTAACTAATATCGATAAAACCTTGAGCACTCTATTAATGTCAATATTTAATGCCTTTAAAAAGTTATTTTTGTTGTAGTATATATCTTATTTCTCGTACAAACAGTAATTAGGATTTATATGACTGTTTTATTTTTATTTATGTGCTAAGATATAATTTCTCTTTCATTAAATATTTACCGCATTTATGTGTTAAGATTTCATAATTTAAGTATTTGTAATCTTCAAGAACTATTACTATTAAGGTAAAATGGAGAAAAAAATAATTAATATTATCTTAAATTCCTTAATAAATATAATCTTTTTTTAAAAAAAATTGTGACACACAATTTGAGACGTGAAGTAACAATAAAAAAAATTGACAAGAGACAGACTCTCTATATGTATTTTTTTTTATTTTTACCTAAAAGTTGTTACAGTTGGTTGGCTATTAAATTTATATTTTGGTAGGAGAACAGTGAGTCAATTTAATACACAGAGGTGGAGGATTGAACATTATTTCTAAAGTCACGGGATATATATTTCACAATTTTATTTATTTTTAAAATCTTTGGAATAAAAATAAAATTCGATAAACATATATAAGATGTATATTAAATTTGTTTTGAATTCAAGTCAACAATTGTAGGAGGGATTTGATCTTGAGGCCGTAATCACAAGATAAATTACTCAACAATAGATTAGATTCAGACGTGGATTTTGCTCCGATTCTTAATAAATGTGTTTCTAAAGGCAGTTTGGATGTCTTAATAAAAGCAGTTTTAAAAAAATACTTTTGAAAGTGTTGAAACTTATTTTTAAAATAATGAGTTATGTGTTTGGATAAAAGTGCTAAAGTTGTTTTGTCAAACGTGAAAAGGGAAAAATGGAAGAAAGAGATGTTAGGGTTATGTTGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGTTTATAAGCTAAAAAAAAAAAACACCTCTACCCTAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTATTTTGAGTATTGTCAAACAGCTAAATAAGTCAAAAATCAGCTTTTAAGTCAATTTGATCAGCTTTTAAGTTGAGTCAAACAGGCTCTAATTATATAAATTTCTTGCATAACTTTTTCCTCGATCTTATATATCTTTTTAATTATTGTTTGTTTCTATACTTTTTCCTGTTGGTAATTAATACTTGACTCATTTATAAGTTGGGCTATTTATGTAGCATACTAAATTCAAATGTGGTGGAATTTCATTGGGCCTAAGTTGGGCCCATGTACTTGGAGATATATTCTCAGCAACTGAATTTTGGAACTTTTTGGGTAAAGTAGTTGGTGGATACCAACCGCCCCGACCCATTAACTTGGCCCATTCATTAACCAAAGCAAACTCAACAGAAACCCTACAAAAAATTGTGGAGGATCCACTTTCCATAAAACGGGTTGACCCGGTTGAAGATCATTGGGTTGCTAATGCAAGTTACAAGTTGGAGTCGTTTTCGATCCATGTTAGTGCATCCAAATTGGGCCAATTACAATCAAGAATAGGGATTCAAGGCCCATTTGAATCACTATGTTCTATTATTTGGCAGTCCATTTCAAGAATTAGAGATGGGCCAGGCCCAAAAGTTGTGACCATTTGTAAAAAGGGTGAAGAAAAGAAAGAGGGCGGCCTTATAGGAAACACACAATTAATTGGTGTGGTTAAGGTTGATGACTCAATTAGAGATGCTAATCCTAGTGAATTAGCAAGGTTGATTAAAAATGAGATCATCGACGAGCGATTAAAGATCGA</genome_strand>
        <mrna_strand>TCCTCTAATCCCAATAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAGGTGTCACAATTTATAAAATAAAAGAACCAATATTTATTTGGTTCAATTATTTTTATATGACTAATGGTAGGTTTAGAAGGGCAGAATCAGGGAGACCTTACATTAAATGTAATGATTGTGGTGCTAGGTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTAAATTCAAATGTGGTGGAATTTCATTGGGCCTAAGTTGGGCCCATGTACTTGGAGATATATTCTCAGCAACTGAATTTTGGAACTTTTTGGGTAAAGTAGTTGGTGGATACCAACCGCCCCGACCCATTAACTTGGCCCATTCATTAACCAAAGCAAACTCAACAGAAACCCTACAAAAAATTGTGGAGGATCCACTTTCCATAAAACGGGTTGACCCGGTTGAAGATCATTGGGTTGCTAATGCAAGTTACAAGTTGGAGTCGTTTTCGATCCATGTTAGTGCATCCAAATTGGGCCAATTACAATCAAGAATAGGGATTCAAGGCCCATTTGAATCACTATGTTCTATTATTTGGCAGTCCATTTCAAGAATTAGAGATGGGCCTGGCCCAAAAGTTGTGACCATTTGTAAAAAGGGTGAAGAAAAGAAAGAGGGCGGCCTTATAGGAAACACACAATTAATTGGTGTGGTTAAGGTTGATGACTCAATTAGAGATGCTAATCCTAGTGAATTAGCAAGGTTGATTAAAAATGAGATCATCGACGAGCGATTAAAGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336178" ref_strand="+" ref_description="SGN-U336178        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transferase family protein, low similarity to hypersensitivity-related gene (Nicotiana tabacum) GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase (Clarkia concinna) GI:6166330; contains Pfam profile PF02458: Transferase family | chr3:8611133-8612697 FORWARD | Aliases: F14O13.22(evalue: 5e-08, score=55.1) genbank/nr: At3g23840(evalue: 4e-06, score=55.1)">
      <seq>ctaatcccaataagaaaaaaataataataattccaaaaaatggtgtcttcaaaattagaagatggtctaatttacaacataaaattatcctcagttggaccagcaagagtaacaggacaagatgttgtttatgagccaagtaacatggatttggccatgaaattacattatttgagagggatttattactttgatagccaagcatttcaaggtttattgaagcacaatgtgataaaactttggatgaatggctagaaatgaaagatacttcacttgagaaattacttgtttctaatcaagttcttggtcctgaattggctttctcacctccagtcctcatacaggtatgtatactcttctggctcgattaatttaaatttatatcgaataagctcattaaaaagatatactgatatagtgcttcctatcaagaagttattcattttcatgtctcgggttttatgtttcattttttttctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="43304" stop="42095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43004" g_stop="42794" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42793" i_stop="42667" i_length="127">
            <donor d_prob="0.427" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42666" g_stop="42395" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="483" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U336178" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43004" e_stop="42794"/>
          <exon e_start="42666" e_stop="42395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCCACTAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAGGTGTCACAATTTATAAAATAAAAGAACCAATATTTATTTGGTTCAATTATTTTTATATGACTAATGGTAGGTTTAGAAGGGCAGAATCAGGGAGACCTTATATTAAATGTAATGATTGTGGTGCTAGGTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAGGTATGTATACTCTTCTGGCTCGATTAATTTAAATTTATATCGAATAAGCTCATTAAAAAGATATACTGATATAGTGCTTCCTATCAAGAAGTTATTCATTTTCATGTCTCGGGTTTTATGTTTCATTTTTTTTCTCTTG</genome_strand>
        <mrna_strand>CTAATCCCAATAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAG...............................................................................................................................GTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAGGTATGTATACTCTTCTGGCTCGATTAATTTAAATTTATATCGAATAAGCTCATTAAAAAGATATACTGATATAGTGCTTCCTATCAAGAAGTTATTCATTTTCATGTCTCGGGTTTTATGTTTCATTTTTTTTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="54826" stop="55910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55126" g_stop="55610" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55126" e_stop="55610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACACACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATACGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCA-CCCCCAATACTCATCCCATGTTAACCCATGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGATACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="55251" stop="56151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55551" g_stop="55851" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55551" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGATACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGTAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATACCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTATATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315391" ref_strand="+" ref_description="SGN-U315391        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|56407681|gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] (evalue: 7e-23, score=108)">
      <seq>tgattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcttggcccgtggttttttcccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="73122" stop="77379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73422" g_stop="73745" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73746" i_stop="76948" i_length="3203">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76949" g_stop="77079" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="454" r_length="132" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U315391" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73422" e_stop="73745"/>
          <exon e_start="76949" e_stop="77079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTTTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTACACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACGGCCTCTTCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAGCTCTTCAACATTATGGCACAAGAGGCTTAGCTACATTAGCGAGAAAGGACTTAATGTTCTAGCCAAGAAGAAATTATTGTCAAATTTCCAAAGTGCTAAATTAGAAAAATGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCAAGAAAGACAGAGTTGCTTGAGTTAGTTCACTCTGATTTATGTGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTTTGTCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAACACTAAAGACCAAGTGTTAGGTGTCTTTAAGCAGTTTCAGGCTTCAGTTGAAAGAGAAACTGGAAAGAAATTGAAATGTATTCGTACTGATAATGGTGGTGAATATTTGGACCATTTGACGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCAAGACTCCTCAGCTTAATGGTTTGGCTGAGAGGATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAGTTGCCAAACTCATTTTGGGGTGAGGCTTTATTGACCGCTGCACATGTTATTAATCTTTCTCCTGTTGTTGCTTTGCAAAGTGATGTACCAAATAGTGTTTGGTATGGAAATGATGTTTCCTATGACCATTTGAGAGTATTTGGTTGCAAAGCTTTTGTACATGTGCCGAAAGATGAGAGGTCAAAATTAGATGCCAAGACAAGGCAAAGCATCTTCATTGGATATGGCCTAGATGAATTTGTATACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAGCGGAGAAGGTAGAATCTTCAAATTTTGATGGTATAGTCCATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTATTGGGTTTGATAATCATGGTGACGCCCAGAATCATGTATCAAATCAACATGTTAATGTTGATAATAACAATGATATTGTTATTGATGATCCTGTTGCTCATGAAGTTGTGGATGAATCAAATATTCCGCTTCGGAGGTCCACAAGACAACGGTTTCCTTCCTCCCGTTATTCATCCAATGAGTATGTGTTACTCACTGACGGGGGAGAACCTGAATGTTATGAGGAGGTCATGGAAGATGAGCACAAGAATCAATGGATTGAAGCCATGCAAGACGAGATGAAGTCTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTGCCCAAGGGCATGAGAGCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTGAAGAACACAACTTGAAGCCCAGGTACAAAGCTAGATTGGTTGTTAAGGGATTCGGTCAAAGGAAATGTATTGACTTTGACGAAATATTTTCTCCTGTTGTGAAAATGTCCTCGATTCGCACAGTTCTAGGTTTGGCTGCTAATCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGCTTTCCTTCACGGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGGTAAAGAAAATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAATGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGGCTATAAGAAGACTTCTTCAGATCATTGCGTATTTGTACAAAAATTTTCTGAGAAAGATTTTATCATCCTTTTGTTGTATGTGGATGACATGTTGATTGTGGGCAAAAATACTTCCAAGATTAACGAGCTAAAGAAAGAGTTGTGTAAGTCTTTTTCTATGAAAGACTTGGGTCATGCCAAGCAAATTTTGGGCATGAGAATTACTCGTCTTAGAGATAAAAGGAAGATTTATTTGTCCCAGAAGAAGTACATTGAACGCGTACTGGAACGCTTCAATATGAAGAATGCTAAGCCTGTTAGTATACCTCTTGATGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAGCTAGGGAGGAAAAAGAGAATATGGCCAAAGTTCCATATTCCTCCGTCGTCGAAAGTCTAATGTATGCAATGGTGTGCACTAGACCTGATATTGCTCACGCAGTTGGTTTGTCAGTAGATTTCTCGAAAATCCGGGAAAAGAGCATTGGGAAGCTGTGAAATGAATACTCAGGTATCTTAGAGGAAGCTCAGATGAATGCTTGTGTTTTGGAGCATCAAATCCAATCTTGAAAGGCTATACAGATTCTGATATGGCAGGTGACCTTGATAACAGAAAATCCACTACTGGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGTCAAAGTTGCAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTATATTGCGGCTACTGAAGCCGGCAAGGAGATGATATGGCTAAAGCAATTTCTTCAAGAGCTTGGTTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGCAAGAACTCCATGTACCATGCAAGAACAAAACACATTGACGTCAGATATCATTAGATTCGTGAGAAAGTGGAGAATGAATCATTTCACGTCAAAAAAATTCACACAAGTGAAAATCGTGCAGATATGCTGACAAAGATGATACCAAAAGACAAGTTCGAGTCATGCAAAGAACTTGTGGGTATGAGCTCTCTCTAAAGAAGTTGAAGATACCTTGTTCCAGTAAATGGGACTGGAGGGGGAGATTTGTTGAATCCATCCCATTGTTTTAGTCAACTTTAGTTATTCAATTGGTACAAACAATTGTTAAAAAGGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTGGCAAATTGGTAAGATTTGCAACCATTTTTGACTTTGCTATGTTTACATATGTCATTAGTGACATAGGTATGGTTTTATCCTTCTATAAATAGAGCATTCTTGCTCATTTGTAGAACACACCAAGTTAGAGAAAAAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATACAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTTGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCTCATTTTATTTCCATTACTTTTACCATATATATTTTTGTGCTT-TTCGCGTTTTTCCAA</genome_strand>
        <mrna_strand>TGATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322462" ref_strand="+" ref_description="SGN-U322462        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT4G13850.2 | Symbol: None | glycine-rich RNA-binding protein (GRP2), glycine-rich RNA binding protein 2 AtGRP2 (Arabidopsis thaliana) GI:2826811 | chr4:8020948-8022217 FORWARD | Aliases: None (evalue: 4e-36, score=147) genbank/nr: gi|76160996|gb|ABA40461.1| RNA binding protein-like protein [Solanum tuberosum] >gi|76160980|gb|ABA40453.1| RNA binding protein-like protein [Solanum tuberosum] (evalue: 3e-45, score=184)">
      <seq>cattttctggcctcttaaaccctgaaaatttgtcttcatcagatatcaatggctttctacaacaaacttggtggtcttttgaggcagagcatctcaacaagtggcaatacattaaacgcacaatcatcagcaccttcaatgcttaatgccatccgttgcatgtcaacaaagctttttgttggaggtctttcatttggaactgacgatctgtctctgagggaagccttcaccagttttggtgatgtcgtcgaggctaaggtcatcatggatagagattctgggaaatcaaagggatttggattcgtgaacttcacagacggccaatctgcccaagatgctatgtcagcaatggatggacaggatctcaacgggaggaacatccgcgtctctctagcccaagagagagctccacgcagcggtggttttcgttctggtggtggcggatatggtggtggtggatttggcggtggctatggtggatctagacaaaatgatgcatactaagtaaaacttgtaatctttgctcacttgtctatacaagcatggcaaatttcgtaggtaggagatagaacgtaacgcgattttgtgttgaacggattttccttagcttttaatgtatggttctatattaaggttttatcatatgatcacttgacttgccctaactttggtccaagtgggcaagtcgatttgaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="82806" stop="86880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83106" g_stop="83147" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83148" i_stop="84998" i_length="1851">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84999" g_stop="85140" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="184" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85141" i_stop="85233" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85234" g_stop="85302" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="253" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85303" i_stop="85909" i_length="607">
            <donor d_prob="0.477" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85910" g_stop="86016" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="360" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86017" i_stop="86261" i_length="245">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86262" g_stop="86579" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="694" r_length="334" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="709"/>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U322462" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83106" e_stop="83147"/>
          <exon e_start="84999" e_stop="85140"/>
          <exon e_start="85234" e_stop="85302"/>
          <exon e_start="85910" e_stop="86016"/>
          <exon e_start="86262" e_stop="86579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTGGCCTCTTAAACCCTGAAAATTTGTCTTCATCAGGTTTGTTTTTTTAATAAGTTTTTTGAGATGGGATTATGCTTATTTTGCTATATTATGGTTATTTGCCCTGTTGTTTTGTTTTGGTTCTTGATTATTTAGTTTATATGGAGCTGGAGCTTTGTTAAGTGTTTGGGGTATGTTGGTTTTATGTTTGGGGTATGTTGTAGAACTCTTTTTTTTTTTTTATGTTTGGTGATAAAAATGAGTTTTTTTTAATAATGTTTGGTGATTAAAGTGAGTTTTTTGAGATGTGTTTATTCTTATTTGGTTATCCTATGGTTATTTGCCTTGTTGTCTTGTTATGGTTCTTGATTATTTAGTTTATATGGAGCTTTGTTAAGTGTTTGAGGTACATTTGTTTTATGTTTGGTTCATGTTATAGAACTCTTACTCATTGTTTTTTCATGTTTGGTGAAAAAAATGAGTTTTTTTTAATGTTTGGTGATAAAAATGAGTTTTTTTAGATGAGTTTATGCTTATTTGGCTATGCTATTGTTCTTTGCCTTATTGTTTTATTTTGGTTCTTGATTTTTTGTTAATATGGAACTTTGTTAAGTCTTTGGGGTCTTTTGGTTTTATGTTTGGTTCATGTTGTAGAACTTTTACTCATTGTTTTTTTATGTTTGATGGAAAAAATGAGTTTTTTGAGATGGGTTTATGCTTATTTGATTATATTATGGTTCTTTACCTTATTGTTTTGCTATGGTTTTTTATTTTAAGTTATTATGGAGCTTTGTTAAGTCTTTGGGGTATATTGGTTTTGTGTTTGGTTTATATTGTAGATCTTTTACTCATTGTTTTTTAATGTTTGGTGAAAAAAGATTTGTTTTTTGAGATGGGTTTATGTTTATTTGTTATATCATGGTTCTTTACCTAATTATTATGTTATGTTCCTTTTTTTGGGTTAATATGGAGCTTTGTTAAGTCTTTGGTGTATCTTGGTTTTATGTGTGGTTTCATATTGTAGAACTTTTACTCATTGTTTTTTCATGTTTGGTTAAAGAAAATCACTCTTTACCCTGTTCAAGTCTGATACTGTATTCTTCGTAGAACTTTTATGGGTTTTTTATGTTTGGTGGAAAATATTGTTCTTTGTTCTATTCAAAGTGAGATGATGCTTTGGCCTTCTTATTAGTTTGATATCTTTTGTTATTAGTAGTGTTTCTTTTTCTTGTATGTATGTAGTGTATTTCTCTAATTTGTGTAATTGAGTTAAACGAGTTTGATGATTGTTCTGTTTTGAAATAAATATACTGGAATGTTGCTCTCACTTGTTATTTGCTTCAGAAAATTAACTGACTACTGTTGAATGATTAGCTAGTTGGCAGGGCAAAGCCACAATGCATCTCATGGGTTTGGGAAAACAGACTCTTTATTCGTGTTGAAAATTTCACTCAAGATGTATGAATAGTCTATCCAGAACCAAATAAACTACTTTTTAAAGAAAAATTATAACTCATAAGCTCAAAATCGTAGCTTTGCCTCTGTGAAGATGGTTTGAACCTAAGATATAATATTAGGCCAGAAATTTAATTTTTGTGTACTGTATCTAAACATGTGTTCTAATATCTAGTAACAAATCCCATGGGGGTGCAAGAGTGAAGGGAAAGGGGAGACCTAGAGAGCTAATAGATTTCACCGCATATGTGGTTTCAGAAATCTAGTTTGTGGATGTATGCCACTGTGTTTTTTTTAGTATGCATTTAAATGAATGAGTTTTGCATCGTTTAGTTGTCATTTGTATAGGTTTTCTGCTTTGTCAATCTACTTATTGATGTTGCCTGTCAGATTAAAGGTTTCCATACTTTAAAATTCTAAATTTGTATAACCTTCTTTTCATTCTTTTTATAGATATCAATGGCTTTCTACAACAAACTTGGTGGTCTTTTGAGGCAGAGCATCTCAACAAGTGGCAATACATTAAACGCACAATCATCAGCACCTTCAATGCTTAATGCCATCCGTTGCATGTCAACAAAGCTTTTTGTTGGAGGTATGTGAGTAGCAGTCTGAAAAAAATATCACAAGTATTGTTTCTTAGTGAATACCCTGCGACAGTTTGCTTATTTATTCCTCAATTTAATAGGTCTTTCATTTGGAACTGACGATCAGTCTCTGAGGGAAGCCTTCACCAGTTTTGGTGTTGTCGTCGAGGGTAATCTCCCAACTATCCCGAGTCTGGCTTGCTTTAGTTTCCATCTTGTTTTTATTCTCCGATTATGAGTATTTGAATGAACAACACAACGAAAATCAAGTTAGATGAAAATGCTATCTTTTATGAAGGATCATACACAGTACAATATGTATCTGATAATAGCTTCCGATGTATATATAATTTAAACCTATACATGGCATGGTGGATGCATAAATTTGTCTGTTGTCTTGTGTTCCTCTTGCTTACTAGGCTATGAAACTTGATAGATTTTCTGCAGCTCGTGATTTGTTTCATGACCTTAAGTGTTCATATAGTGAGTGCTCCACGCGTTTTTGTCATAAATTGCATACTCTAGTGATTGGGCTGGGATATTGGCATTTTTCTGATGGTTTCTAAGTTTGTTCTATCGTTAAGGCATTATCAGCTACTATCTTCATCTCCCTCGTTTAGTTTGTGGGTGCTAGGATTAGTTTAACATCGGAGTTGAACCAATACTTATGGTTTTTTTGACATGGTCCTCCCTTTCATCTCGCTTGCTAGCTCTTACTTTCTGCTGTTTGAACTTTGTTCGTGTGTTAAATATTCGTGTACTTTGATTGTGGCACAGCTAAGGTCATCATGGATAGAGATTCTGGGAAATCAAAGGGATTTGGATTCGTGAACTTCACAGAAGGTCAATCTGCCCAAGATGCTATGTCAGCAATGGATGGACAGGTAAAATTTTGTTAGTAATACATGAAACCTTTAGTTTATGCCTTTGTATAGTTTAAGGGACTATTTGGTTACAATGATTTGGATTAAATTTTGTACCATATTCGGTTGTGGATATTAGTTGAAACTCAACGACATAGTGTAGTTTTACAAAGTGGGGTCCGGGAAGGATAGAACGTATGCCTCTCAGAAGTAAAGAGGCTGGTTATTCATGAATCATGGCTGATATCACATTATGCTCCCTGTAGGATCTCAACGGGAGGAACATCCGCGTCTCTCTAGCCCAAGAGAGAGCCCCACGCAGTGGTGGCTTTCGTTCTGGTGGTGGC---------------GGATTTGGCGGTGGCTATGGTGGATCTAGACAAAATGATGCATACTAAGTAAAACTTGTAATCTTTGCTCACTTGTCTATACAAGCATAGCAAATTTCGTAGGTAGGAGATGGAACGTAACGCGATTTTGTGTTGAACGAATTTTCCTTAGCTTTTAATGTATGCTTCTATATTAAGGTTTTATCATATGATCACTTGACTT-CCCTAACTTTGGTCCAAGTGGGCAAGTCGATTTTA</genome_strand>
        <mrna_strand>CATTTTCTGGCCTCTTAAACCCTGAAAATTTGTCTTCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATGGCTTTCTACAACAAACTTGGTGGTCTTTTGAGGCAGAGCATCTCAACAAGTGGCAATACATTAAACGCACAATCATCAGCACCTTCAATGCTTAATGCCATCCGTTGCATGTCAACAAAGCTTTTTGTTGGAG.............................................................................................GTCTTTCATTTGGAACTGACGATCTGTCTCTGAGGGAAGCCTTCACCAGTTTTGGTGATGTCGTCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGTCATCATGGATAGAGATTCTGGGAAATCAAAGGGATTTGGATTCGTGAACTTCACAGACGGCCAATCTGCCCAAGATGCTATGTCAGCAATGGATGGACAG.....................................................................................................................................................................................................................................................GATCTCAACGGGAGGAACATCCGCGTCTCTCTAGCCCAAGAGAGAGCTCCACGCAGCGGTGGTTTTCGTTCTGGTGGTGGCGGATATGGTGGTGGTGGATTTGGCGGTGGCTATGGTGGATCTAGACAAAATGATGCATACTAAGTAAAACTTGTAATCTTTGCTCACTTGTCTATACAAGCATGGCAAATTTCGTAGGTAGGAGATAGAACGTAACGCGATTTTGTGTTGAACGGATTTTCCTTAGCTTTTAATGTATGGTTCTATATTAAGGTTTTATCATATGATCACTTGACTTGCCCTAACTTTGGTCCAAGTGGGCAAGTCGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318104" ref_strand="+" ref_description="SGN-U318104        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP:P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family | chr3:8603451-8605469 FORWARD | Aliases: F14O13.9(evalue: 0, score=664) genbank/nr: putative(evalue: 0, score=683)">
      <seq>tccaaagcactccccatttccacattttccaataacaccattagcctttctttcgtatactctctgcaatatcaaagcgataaataaatcaaattgatatatcatatacatatataaagttatgaaaactataatggcatcgccacctgacacaagcaaaaccacaaaactagagcgctacaatagctatattcgaagagttaatagtacaaaactcatcgctgcatcgtctaagcttttatttcgtgtcactttattagtggctcttttacttattttcttcttcactataaattaccctccgttaacttccgaaaaatcattcaacaataatattcacaccactacccataaccttctatcctccgcgatttacggcggtggggcgtcgtgggagaaacaagttcgtcactcctcgacaccccaccgccctaacgggctatccgtcctcgtgacgggagcagctggcttcgttggttctcattgctccttagcattgaagaagcgtggtgatggtgttttaggtttagataatttcaattcatactacgatccttcgttgaaacgtgctcgtcaagatcagttattgaagcatcagattttcattgtagaaggtgatattaacgatacagagcttctgaaaaagcttttcgacattgttccttttactcatatccttcatctagctgcacaagcaggtgttcgttacgcgatgcagaatcctctctcttatgtaaactcaaacgtagctgggtttgtaaatctgttagaaattgctaaagctgcagatccacaaccggcgatagtctgggcttcatcgagctctgtttacggattgaacaccaaagttcctttctccgaagatcacagaacagatcaaccagctagtttatacgctgcaacgaagaaagcaggggaagcaattgcacatacatataaccatatctacgggctttcattaacaggtttgaggtttttcactgtttacggaccttggggaagaccagacatggcgtatttcttcttcacaaaggatatgattcaggggaaatcgattaacgtgtacgtcactcaggatgataaagaggtggcgcgtgacttcacgtacattgatgatatagtaaaaggatgcgtcggcgcgttggatacggcggagaagagcaccgggagcggcggaaagaagagaggtccggctcaattgagggtttacaatttggggaatacttcgccagtgtcggtgaagaagttggtggcaattctcgaaaatttattgaatcttaaggctaaaaagaatgttgttaaaatgccacgaaacggcgacgttccgtatacacatgccaacgtgagcctggcgttaagggattttgggtataagccaacaactgatttgtcaagtgggttaaggaaatttgtgaagtggtatgttagttattatgggattcaatcaagggtaaaaaaggaaagtgaaggggaaaagtgaaaaagactatttttaccttttattttattttatttttgtttttcatgatgtaatatttgggtcaaaattatgtttacttgtttatttttagtataggaatagaattttatatttataaaaaaaataagaaaattagagaagggtggaaatggcaagtgtagatctatgaaaagtggggtttataataatgtactttttaaaggtattattggatgtaggatttaagaaaaaaaaatcaatcataaattgtaatattttggaacaaaaatgatgattccatcaagattaatcttatgtcttttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="94614" stop="92237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94304" g_stop="92537" g_length="1768"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="1787" r_length="1769" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U318104" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1768</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94304" e_stop="92537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCATTTTCCAATAACACCATTAGCCTTTCTTTCGTATACTCTCTGCAATATCAAAGCGATAAATAAATCAAATTGATATATCATATACATATATAAAGTTATGAAAACTATAATGGCATCGCCACCTGACACAAGCAAAACCACAAAACTAGAGCGCTACAATAGCTATATTCGAAGAGTTAATAGTACAAAACTCATCGCTGCATCGTCTAAGCTTTTATTTCGTGTCACTTTATTAGTGGCTCTTTTACTTATTTTCTTCTTCACTATAAATTACCCTCCGTTAACTTCCGAAAAATCATTCAACAATAATATTCACACCACTACCCATAACCTTCTATCCTCCGCGATTTACGGCGGTGGGGCGTCGTGGGAGAAACAAGTTCGTCACTCCTCGACACCCCACCGCCCTAACGGGCTATCCGTCCTCGTGACGGGAGCAGCTGGGTTCGTTGGTTCTCATTGCTCTTTAGCATTGAAGAAGCGTGGTGATGGTGTTTTAGGTTTAGATAATTTCAATTCATACTACGATCCTTCGTTGAAACGTGCTCGTCAAGATCAGTTATCGAAGCATCAGATTTTCATTGTAGAAGGTGATATTAACGATACAGAGCTTCTGAAAAAGCTTTTCGACATTGTTCCTTTTACTCATATCCTTCATCTAGCTGCACAAGCAGGTGTTCGTTACGCGATGCAGAATCCTCTCTCTTATGTAAACTCAAACGTTGCTGGGTTTGTAAATCTGTTAGAAATAGCTAAAGCTGCAGATCCACAACCAGCGATAGTCTGGGCTTCATCGAGCTCTGTTTATGGATTGAACACCAAAGTTCCATTCTCCGAAGATCACAGAACAGATCAACCAGCTAGTTTATACGCTGCAACGAAGAAAGCAGGGGAAGCAATTGCACATACATATAACCATATCTACGGGCTTTCATTAACAGGTTTGAGGTTTTTCACTGTTTACGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACAAAGGATATGATTCAGGGGAAATCGATTAACGTGTACGTCACTCAGGATGATAAAGAGGTGGCGCGTGACTTCACGTACATTGATGATATAGTAAAAGGATGCGTCGGCGCGTTGGATACGGCGGAGAAGAGCACCGGGAGCGGCGGAAAGAAGAGAGGTCCGGCGCAATTGAGGGTTTACAATTTGGGGAATACTTCACCAGTGTCGGTGAAGAAGTTGGTGGCAATTCTCGAAAATTTATTAAATCTTAAGGCTAAAAAATTTTTTATTAAAATGCCACGAAACGGCGACGTTCCGTTTACACATGCTAACGTGAGCCTGGCGTTGAGGGATTTTGGATATAAGCCAACAACTGATTTGTCAAGTGGGTTAAGGAAATTTGTGAAGTGGTATGTTAGTTATTATGGAATTCAATCAAGGGTAAAAAAGGAAAGTGAAGGGGAAAAGTGAAAAAGTCTA-TTTTACCTTTTATTTTCATTT-TTTTTGTTTTTTATGATGTAATATTTGGATCAAAATTATGTTTACTTGTTTATTTTTAGTATAGGAATAGAATTTTATATTTATAAAAAAAATAAGAAAATTAGAGGAGGGTGGAAATGGCAAGTGTAGATCTATGAAAAGTGGGGTTTATAATAATGTAC-TTTT-AAGGTATTATTGGATGTAGGATTTAAGGAAAAAAAAAATCAAATCATAAATTGTAATATTTTGGAACAACAATGATGATTCCATCAAGATTAATCTTATGTCTTTTATCTT</genome_strand>
        <mrna_strand>TCCACATTTTCCAATAACACCATTAGCCTTTCTTTCGTATACTCTCTGCAATATCAAAGCGATAAATAAATCAAATTGATATATCATATACATATATAAAGTTATGAAAACTATAATGGCATCGCCACCTGACACAAGCAAAACCACAAAACTAGAGCGCTACAATAGCTATATTCGAAGAGTTAATAGTACAAAACTCATCGCTGCATCGTCTAAGCTTTTATTTCGTGTCACTTTATTAGTGGCTCTTTTACTTATTTTCTTCTTCACTATAAATTACCCTCCGTTAACTTCCGAAAAATCATTCAACAATAATATTCACACCACTACCCATAACCTTCTATCCTCCGCGATTTACGGCGGTGGGGCGTCGTGGGAGAAACAAGTTCGTCACTCCTCGACACCCCACCGCCCTAACGGGCTATCCGTCCTCGTGACGGGAGCAGCTGGCTTCGTTGGTTCTCATTGCTCCTTAGCATTGAAGAAGCGTGGTGATGGTGTTTTAGGTTTAGATAATTTCAATTCATACTACGATCCTTCGTTGAAACGTGCTCGTCAAGATCAGTTATTGAAGCATCAGATTTTCATTGTAGAAGGTGATATTAACGATACAGAGCTTCTGAAAAAGCTTTTCGACATTGTTCCTTTTACTCATATCCTTCATCTAGCTGCACAAGCAGGTGTTCGTTACGCGATGCAGAATCCTCTCTCTTATGTAAACTCAAACGTAGCTGGGTTTGTAAATCTGTTAGAAATTGCTAAAGCTGCAGATCCACAACCGGCGATAGTCTGGGCTTCATCGAGCTCTGTTTACGGATTGAACACCAAAGTTCCTTTCTCCGAAGATCACAGAACAGATCAACCAGCTAGTTTATACGCTGCAACGAAGAAAGCAGGGGAAGCAATTGCACATACATATAACCATATCTACGGGCTTTCATTAACAGGTTTGAGGTTTTTCACTGTTTACGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACAAAGGATATGATTCAGGGGAAATCGATTAACGTGTACGTCACTCAGGATGATAAAGAGGTGGCGCGTGACTTCACGTACATTGATGATATAGTAAAAGGATGCGTCGGCGCGTTGGATACGGCGGAGAAGAGCACCGGGAGCGGCGGAAAGAAGAGAGGTCCGGCTCAATTGAGGGTTTACAATTTGGGGAATACTTCGCCAGTGTCGGTGAAGAAGTTGGTGGCAATTCTCGAAAATTTATTGAATCTTAAGGCTAAAAAGAATGTTGTTAAAATGCCACGAAACGGCGACGTTCCGTATACACATGCCAACGTGAGCCTGGCGTTAAGGGATTTTGGGTATAAGCCAACAACTGATTTGTCAAGTGGGTTAAGGAAATTTGTGAAGTGGTATGTTAGTTATTATGGGATTCAATCAAGGGTAAAAAAGGAAAGTGAAGGGGAAAAGTGAAAAAGACTATTTTTACCTTTTATTTTATTTTATTTTTGTTTTTCATGATGTAATATTTGGGTCAAAATTATGTTTACTTGTTTATTTTTAGTATAGGAATAGAATTTTATATTTATAAAAAAAATAAGAAAATTAGAGAAGGGTGGAAATGGCAAGTGTAGATCTATGAAAAGTGGGGTTTATAATAATGTACTTTTTAAAGGTATTATTGGATGTAGGATTTAA-G-AAAAAAAAATC-AATCATAAATTGTAATATTTTGGAACAAAAATGATGATTCCATCAAGATTAATCTTATGTCTTTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336390" ref_strand="-" ref_description="SGN-U336390        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP:P39858; contains Pfam profile: PF01370 NAD dependent epimerase/dehydratase family | chr3:8603451-8605469 FORWARD | Aliases: F14O13.9(evalue: 4e-55, score=205) genbank/nr: NAD-dependent(evalue: 9e-69, score=208)">
      <seq>tatgagtaaaaggaacaatgtcgaaaagctttttcagaagctctgtatcgttaatatcaccttctacaatgaaaatctgatgcttcaataactgatcttgacgagcacgtttcaacgaaggatcgtagtatgaattgaaattatctaaacctaaaacaccatcaccacgcttcttcaatgctaaggagcaatgagaaccaacgaagccagctgctcccgtcacgaggacggatagcccgttagggcggtggatagaaggttatgggtagtggtgtgaatattattgttgaatgatttttcggaagttaacggagggtaatttatagtgaagaagaaaataagtaaaagagccactaataaagtgacacgaaataaaagcttagacgatgcagcgatgagttttgtactattaactcttcgaatatagctattgtagcgctctagttttgtggttttgcttgtgtcaggtggcgatgccattatagttttcataactttatatatgtatatgatatatcaatttgatttatttatcgctttgatattgcagagagtatacgaaagaaaggctaatggtgttattggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="+" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="93349" stop="94600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93649" g_stop="93898" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93899" i_stop="93959" i_length="61">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93960" g_stop="94300" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="591" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="+" ref_id="SGN-U336390" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336390" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93649" e_stop="93898"/>
          <exon e_start="93960" e_stop="94300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGTAAAAGGAACAATGTCGAAAAGCTTTTTCAGAAGCTCTGTATCGTTAATATCACCTTCTACAATGAAAATCTGATGCTTCGATAACTGATCTTGACGAGCACGTTTCAACGAAGGATCGTAGTATGAATTGAAATTATCTAAACCTAAAACACCATCACCACGCTTCTTCAATGCTAAAGAGCAATGAGAACCAACGAACCCAGCTGCTCCCGTCACGAGGACGGATAGCCCGTTAGGGCGGTGGGGTGTCGAGGAGTGACGAACTTGTTTCTCCCACGACGCCCCACCGCCGTAAATCGCGGAGGATAGAAGGTTATGGGTAGTGGTGTGAATATTATTGTTGAATGATTTTTCGGAAGTTAACGGAGGGTAATTTATAGTGAAGAAGAAAATAAGTAAAAGAGCCACTAATAAAGTGACACGAAATAAAAGCTTAGACGATGCAGCGATGAGTTTTGTACTATTAACTCTTCGAATATAGCTATTGTAGCGCTCTAGTTTTGTGGTTTTGCTTGTGTCAGGTGGCGATGCCATTATAGTTTTCATAACTTTATATATGTATATGATATATCAATTTGATTTATTTATCGCTTTGATATTGCAGAGAGTATACGAAAGAAAGGCTAATGGTGTTATTGGAAAATG</genome_strand>
        <mrna_strand>TATGAGTAAAAGGAACAATGTCGAAAAGCTTTTTCAGAAGCTCTGTATCGTTAATATCACCTTCTACAATGAAAATCTGATGCTTCAATAACTGATCTTGACGAGCACGTTTCAACGAAGGATCGTAGTATGAATTGAAATTATCTAAACCTAAAACACCATCACCACGCTTCTTCAATGCTAAGGAGCAATGAGAACCAACGAAGCCAGCTGCTCCCGTCACGAGGACGGATAGCCCGTTAGGGCGGTG.............................................................GATAGAAGGTTATGGGTAGTGGTGTGAATATTATTGTTGAATGATTTTTCGGAAGTTAACGGAGGGTAATTTATAGTGAAGAAGAAAATAAGTAAAAGAGCCACTAATAAAGTGACACGAAATAAAAGCTTAGACGATGCAGCGATGAGTTTTGTACTATTAACTCTTCGAATATAGCTATTGTAGCGCTCTAGTTTTGTGGTTTTGCTTGTGTCAGGTGGCGATGCCATTATAGTTTTCATAACTTTATATATGTATATGATATATCAATTTGATTTATTTATCGCTTTGATATTGCAGAGAGTATACGAAAGAAAGGCTAATGGTGTTATTGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330201" ref_strand="+" ref_description="SGN-U330201        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | Werner Syndrome-like exonuclease (WEX), contains Pfam profile PF01612: 3'-5' exonuclease; identical to Werner Syndrome-like exonuclease (Arabidopsis thaliana) GP:28195109 gb:AAO33765 | chr4:8023315-8025578 REVERSE | Aliases: None(evalue: 4e-59, score=224) genbank/nr: 3-5(evalue: 3e-66, score=254)">
      <seq>tttgtactcatttagcgaaaatgggaactccgatctccggcgaattagacgattgggatcgaccttttacagaggaagaactccaagagatagatgctgcatttgaatcagctaccaagagaaaaagcgattctgtagtcgccgccggcgaagaatcccgtcggaaaagtcgccggaaattgccggcatctctttttgtatatcatcaacaaaatgaggtttccgattcgtcattgttgtctccttgcactagaaatcagtctcggtgtagctattcctctcgttcttctaatcaagcagctaagatagtgatgcaatacccggaaatgtcctttaaaggacgtgttatatacagcagaactattaacgaggtggagaaatctgcagtagagctgttaaattttgttgaggaaaagaagaggaaagaagggaatgttgctcttggatttgacattgaatggaagcccacttttagaagaggtgtgccacctgggaaggctgctgttatgcagatatgtggtgacaagggtaattgttatgttttgcatatcatccactccggaatccctcaaactctgcaatctcttcttgaggatccaactgttgtgaaggtgggtgtttgcattgcaaatgatgctttcaaagttcgccaagatcacaatgtatctgtgaaggctttggaagatctttccgaacttgccaacaaaaagcttgatgatcccaagaagtggagtctagcatcattaactgagaagcttcttgccaagcagctcccaaagccaagtaatatcaggttggggaattgggaggctaatgtgttatctagggaccaactacattatgctgctacagatgcctttgtttcctggtacttatatcaggcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0165P17-E2tIK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0165P17.1" temp_strand="-" temp_description="C09HBa0165P17.1  EF647605.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0165P17 upload_account_name:spain">
        <position start="110872" stop="106747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110572" g_stop="110276" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110275" i_stop="109573" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109572" g_stop="109390" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="480" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109389" i_stop="108533" i_length="857">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108532" g_stop="108402" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="611" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108401" i_stop="108307" i_length="95">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108306" g_stop="108148" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="770" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108147" i_stop="107165" i_length="983">
            <donor d_prob="0.428" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107164" g_stop="107054" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="881" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107053" i_stop="106967" i_length="87">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106966" g_stop="106961" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="887" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0165P17.1" gen_strand="-" ref_id="SGN-U330201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0165P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110572" e_stop="110276"/>
          <exon e_start="109572" e_stop="109390"/>
          <exon e_start="108532" e_stop="108402"/>
          <exon e_start="108306" e_stop="108148"/>
          <exon e_start="107164" e_stop="107054"/>
          <exon e_start="106966" e_stop="106961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACTCATTTAGCGAAAATGGGAACTCCGATCTCCGGCGAATTAGACGATTGGGATCGACCTTTTACAGAGGAAGAACTCCAAGAGATAGATGCTGCATTTGAATCAGCTACCAAGAGAAAAAGCGATTCTGTAGTCGCCGCCGGCGAAGAATCCCGTCGGAAAAGTCGCCGGAAATTGCCGGCATCTCTTTTTGTATATCATCAACAAAATGAGGTTTCCGATTCGTCATTGTTGTCTCCTTGCACTAGAAATCAGTCTCGGTGTAGCTATTCCTCTCGTTCTTCTAATCAAGGTGACGGTTTCTCCTATCTGTTTGCCAAATTGTAGTAAATTGTTAATTACTATCCATGAAAGAAGTTATTTTCTTGTGTAACTAGTTTTTTTTTTTTTAAATTTTAGCTCTATTTGCCAAATTGTAGTAAATTGTTAATCAGGGATGTTACTGGTGGGAGGTGAAGTTATCCACGAAATTAGTCGAGGTGAGTGAAAGCTGGACAAACACCACAGTCATAAAGAAATAGTAGAAATCAAGTAAATTATATGAAATATCTATAGTGAGAAAATAACTTAGTTCTGTGTTTAATAGTTTTAGATATTTGAACACCAGAAAGTAAATTCAGAAGGGAAACAATTTAGGTGTGGTATTAGTATTTTGTTTTTTCATCTAAAGATTTAATTTTTTAGGTTTATGGTAAATCTTAGGCTAATTTCCATTTTAGTGAATTAATGGATCGATATGCTAGCGAACATTTATTATGAATTCGATATAATGAGAATCAAGCCTGCACACTATTTACCCTTTTTAGGTGAGTACTTAGAATAAGCTAGGTAAACTGAATGGAGGAACACAGTTTGGGATACTGTTTTACTGCTCCAAAAAAATTGTCTCTCGAGCTTTTAGTAGTCATAAATTGTTTATGTTGTCTATTATAAATGGTTGCTAGTTTGTTAAAGGATTTTAATGTCCTCGTTTTTGTTTTTGTTTTTTGATGTAGCAGCTAAGATAGTGATGCAATACCCGGAAATGTCCTTTAAAGGACGTGTTATATACAGCAGAACTATTAACGAGGTGGAGAAATCTGCAGTAGAGCTGTTAAATTTTGTTGAGGAAAAGAAGAGGAAAGAAGGGAATGTTGCTCTTGGATTTGACATTGAATGGAAGCCCACTTTTAGAAGAGGTCAGTTCAATGTTTCGAATAAATAGTTTCACTACTGTCTGAAATATGAGAACTATAATCAGAATTCTTGAGTAGTTCTACAATCCTATCAGTCTTTCGATTTAGTAGCTTTTGCATTTATTCTCTTTCTTTAGCTTTTTACTATACTAAGCTTAATTGAGGGGGTGTTAAATGGAATGTTATAAGTTATAAAATGTGACATTTGTTGAAGAATCATCCCACAAGGTCAAAAGGTTACATTGTTTGTTTTGACACCTGGTGAAGTTTGATAGTTCATACTTGATGTTGCGGAACTTACTTGATCTTGTGTTATCTTTAAAACTTCAACAACCACTACTATGCTTCATCTCGAGCTAGTTGGGGTTGGATATATGGATCTTCTAAATCATGTAACTTTATCTGCTGTTGTTTTCTTGGAGCAATCAGAGTGTATAGACAAAAGTCATGAAAAGTACATCCAGAATATGTTGACGACAAAGATATTTTGAGAAAACAGGCATAAGTCACTGCATGCATCTTAGTGATTACATCTGCATCTTTAGTAGATATGTCTACCAAGAGTTTCTTAGTATACTTGTGGTGATTAGAAAGACTTCTTTTCTCTATATAAAATTTCTCCTAAAATATATTATTGAGAGATTATTCTTTTGTATGTTCCTGTTTGGCTTCACTTCTTGCACTCATGCTCTAGTTGTTTAGACATGCTCTTTAGTCTATAAGTAGGCGAATATAACCCCCCCGACCTTTTGTTTTAGTTATCACATCCGTAATTAAATGGATTTTCTGCTTCATTTTACTTGTGTTAAGTGGAATGTTGTAAGTTATAGTGATTACAGAATAATAGGTGTTCTCTTCAGGTGTGCCACCTGGGAAGGCTGCTGTTATGCAGATATGTGGTGACAAGGGTAATTGTTATGTTTTGCATATCATCCACTCCGGAATCCCTCAAACTCTGCAATCTCTTCTTGAGGATCCAACTGTTGTGAAGGTTGGCATTTGTTTGCTTTTTCTGGTAACATTAATCAAACAATGAATTATAATAGGATGTGGTTTCTTAACTTTATGGTGTTCGAACAAACCTAGGTGGGTGTTTGCATTGCAAATGATGCTTTCAAAGTTCGCCAAGATCACAATGTATCTGTGAAGGCTTTGGAAGATCTTTCCGAACTTGCCAACAAAAAGCTTGATGATCCCAAGAAGTGGAGTCTAGCATCATTAACTGAGAAGCTTCTTGCCAAGCAGGTCTTTTAGTTTCTGCTTTTCCTTTCTGCTTTTGAGATCCCTGACCCCAGGGGTCAGGGAGGGGGTAAAGGGGTAATCCGAGACTAGTTTCTTGACTGTTCTAGTCAGTTTCGTATCTATAGACTCGAGGTTTTTTAGTTGAATTGTTAAGGTCTATAAAAACTATAAAAGAACTTCAAACTTGGCAACTTTTAAAGAAGAGACCAAGTTGAAATGCTACCTCATTGCTGACTGCTATACATATGTGCATATTAGAATGTAAAATCTATTTTTTTTTTTTTGAATCAGTCAGTAGTATATACTGAATTGGAGCAAATTTTAGAAATTCTGAAACAAGAGTCCACCAAATCTCAAATGACAAAAGTACTGGTACTACTACAGTAGAACTATATTCATTATTACACAAGATTGGAACTGCCACCACCCAAACAAAAACTATATTCATTACCAACCATTAAGATAACTATTGTGCTTTTCTTGACAGAGAGACCTTTGCAGACAAAACTAAGGACAGAACCAAATCTCCTCTCAACCCCCAAAACCGTACAGTCCTGTCCTGTCTCTTGAGGGAATACATAACATCCGTGCCAGTCACCGTCTTCCTCCTAGCATGCTCACTGTAAGTAACAGCATCAGGAAACACATTCTCTCTCCAAAGTAGATCTTGAGCATCCCACGAGTCTCCTCAATGTGCCAAATGCCTAATGGGTGGCTTTATGTATACCCTGAATGTCATCACGGAGGACCTTACGGTGTTGCTTTGCTCCTCCTTTTCCTAATCCTTTTCATGACCCGACATTTTCAATCAACCTTTAATTTTTCTGAATTGGAAGCTTTGGAATCTTGAAGTGAATGTAAATCTTGCTGAACAAATTTTTTCTTACTACATTAACTATGTTGTGCTTCAATGTCCTCCAAATCTTTCCAGTTGTTCTTCTTCCAATTAAGTGTGAGATTCAACTGATTTTTTTAATTCATTGCAGCTCCCAAAGCCAAGTAATATCAGGTTGGGGAATTGGGAGGCTAATGTGTTATCTAGGGACCAACTACATTATGCTGCTACAGATGCCTTTGTTTCCTGGTACTTATATCAGGTCAGTGGCAAGAATCATTGTTCAATCACCATTTCATATTCTTTTCTCTTTCTCCCCTGTTGGTATGAATATCTTTTTCCATCACAGGCACTG</genome_strand>
        <mrna_strand>TTTGTACTCATTTAGCGAAAATGGGAACTCCGATCTCCGGCGAATTAGACGATTGGGATCGACCTTTTACAGAGGAAGAACTCCAAGAGATAGATGCTGCATTTGAATCAGCTACCAAGAGAAAAAGCGATTCTGTAGTCGCCGCCGGCGAAGAATCCCGTCGGAAAAGTCGCCGGAAATTGCCGGCATCTCTTTTTGTATATCATCAACAAAATGAGGTTTCCGATTCGTCATTGTTGTCTCCTTGCACTAGAAATCAGTCTCGGTGTAGCTATTCCTCTCGTTCTTCTAATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTAAGATAGTGATGCAATACCCGGAAATGTCCTTTAAAGGACGTGTTATATACAGCAGAACTATTAACGAGGTGGAGAAATCTGCAGTAGAGCTGTTAAATTTTGTTGAGGAAAAGAAGAGGAAAGAAGGGAATGTTGCTCTTGGATTTGACATTGAATGGAAGCCCACTTTTAGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCCACCTGGGAAGGCTGCTGTTATGCAGATATGTGGTGACAAGGGTAATTGTTATGTTTTGCATATCATCCACTCCGGAATCCCTCAAACTCTGCAATCTCTTCTTGAGGATCCAACTGTTGTGAAG...............................................................................................GTGGGTGTTTGCATTGCAAATGATGCTTTCAAAGTTCGCCAAGATCACAATGTATCTGTGAAGGCTTTGGAAGATCTTTCCGAACTTGCCAACAAAAAGCTTGATGATCCCAAGAAGTGGAGTCTAGCATCATTAACTGAGAAGCTTCTTGCCAAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAAAGCCAAGTAATATCAGGTTGGGGAATTGGGAGGCTAATGTGTTATCTAGGGACCAACTACATTATGCTGCTACAGATGCCTTTGTTTCCTGGTACTTATATCAG.......................................................................................GCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3571" PGL_stop="532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3571" e_stop="3489"/>
            <exon e_start="3226" e_stop="2993"/>
            <exon e_start="2080" e_stop="1574"/>
            <exon e_start="1388" e_stop="1226"/>
            <exon e_start="1069" e_stop="532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="0.940"/>
          <exon-intron don_prob="0.978" acc_prob="0.975" e_score="0.996"/>
          <exon-intron don_prob="0.902" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="3571" e_stop="3489" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="3488" i_stop="3227" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="3226" e_stop="2993" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2992" i_stop="2081" i_length="912"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2080" e_stop="1574" e_length="507"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.816">
            <gDNA_intron_boundary i_start="1573" i_stop="1389" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1388" e_stop="1226" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.966">
            <gDNA_intron_boundary i_start="1225" i_stop="1070" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="1069" e_stop="532" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3571" stop="3489"/>
              <exon start="3226" stop="2993"/>
              <exon start="2080" stop="1574"/>
              <exon start="1388" stop="1226"/>
              <exon start="1069" stop="532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGCTCACTCCAGTCAATTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAG : GTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAGAAAGGATTTTGAG : GATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAG : ATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAG : ACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATCTTCTTCCTTTTTTTGGA</gDNA_template>
            <first_frame> P  A  H  S  S  Q  F  L  S  L  V  G  P  G  I  W  E  I  N  H  I  Y  G  V  L  Q  H  R :   F  W  G  Y  S  L  K  Y  L  K  M  V  S  K  S  I  L  I  A  F  Y  L  L  *  E  T  S  C  N  L  L  L  M  F  L  Q  I  S  K  W  I  Y  R  M  M  Q  Q  F  H  L  G  K  K  H  I  I  H  W  F  C  L  R  R  Y  *  I  N  F  L  S  C  A  S  E  R  I  L  R :   I  C  G  K  Q  S  V  S  C  F  C  I  R  I  C  G  C  A  T  Y  Q  T  V  L  W  L  A  T  L  P  L  *  L  R  L  V  K  K  T  L  N  C  H  K  E  L  T  F  *  *  G  Q  V  D  F  S  S  *  L  L  L  F  V  A  N  *  R  C  C  R  L  M  M  L  P  V  I  S  L  L  K  I  L  Y  F  Q  F  A  L  C  I  H  S  *  E  K  L  N  V  K  I  S  S  G  P  P  L  N  M  T  S  R  V  F  Y  L  R  L  F  N  S  L  I  Q  G  K  G  K  T  S  I  C  L  L  C  L  T  L  V  I  K  K  M  K  A  S  A  T  W  S  F  L  I  C  L  R  Q  W  E  R  F  P  F  M  W  R  I  C  R :   *  E  L  S  S  I  V  S  N  Q  F  H  Q  S  L  *  I  R  V  D  C  C  P  L  K  V  R  L  I  A  K  A  L  H  I  I  C  C  C  P  C  T  K  F  V  K  D  L  P  E  K  L  Y  Q  :  T  T  *  N  N  W  L  K  E  C  G  G  A  *  A  M  L  *  E  H  I  F  L  S  K  S  T  V  I  *  G  R  I  S  N  R  R  G  I  R  G  N  K  K  R  R  S  L  L  S  S  I  Q  *  E  T  P  R  E  S  C  G  S  Q  K  S  I  K  H  T  R  R  G  K  *  W  Q  *  R  W  E  D  G  C  S  R  M  F  T  I  I  G  S  M  E  H  R  S  S  I  A  V  A  S  I  E  I  F  V  *  F  M  *  P  N  F  P  L  Y  S  G  V  I  F  *  V  A  L  S  L  V  *  K  I  E  S  S  F  S  M  Y  S  E  Y  S  V  S  L  I  N  L  Q  C  Y  R  T  L  *  E  I  E  L  C  N  L  L  I  F  S  N  G  E  E  S  S  S  F  F  W  </first_frame>
            <second_frame>  P  L  T  P  V  N  S  *  V  *  S  V  L  V  S  G  R  *  T  T  F  M  E  C  C  S  T   : G  F  G  V  T  H  *  S  T  *  R  W  F  P  K  V  Y  *  *  P  S  T  C  Y  E  K  H  L  A  I  C  C  *  C  S  Y  K  *  A  S  G  S  T  E  *  C  N  N  F  I  L  E  R  S  I  L  F  T  G  S  V  *  E  D  I  K  S  I  S  *  V  V  L  Q  K  G  F  *   : G  S  V  G  S  N  L  *  V  A  F  A  S  A  S  V  V  A  Q  H  I  K  P  S  C  G  L  L  L  C  H  C  D  *  G  L  *  R  K  P  *  T  A  T  R  N  L  L  F  D  E  A  K  *  T  F  L  H  S  Y  F  S  L  L  P  T  E  G  V  A  D  *  *  C  C  Q  *  S  H  Y  S  K  S  C  I  F  N  L  L  S  A  F  I  L  R  K  N  *  M  *  R  *  V  L  V  H  H  *  T  *  R  A  G  S  S  T  *  G  F  S  T  A  *  F  K  E  R  E  K  H  L  F  V  S  C  V  *  P  *  *  S  R  R  *  R  P  A  L  L  G  H  F  L  F  A  *  D  N  G  K  D  F  P  S  C  G  G  Y  A   : D  E  N  Y  L  Q  L  F  Q  I  S  F  T  K  A  Y  R  S  E  *  I  V  V  P  *  R  *  G  *  L  P  K  L  C  I  S  Y  A  V  A  P  V  Q  S  L  *  R  I  C  R  K  S  Y  I  R :   R  R  E  T  T  G  *  R  S  A  G  E  H  K  Q  C  Y  R  N  T  Y  F  C  P  N  L  Q  S  Y  K  E  E  Y  Q  I  E  E  G  *  E  E  T  R  R  E  G  H  C  C  R  Q  S  N  E  K  R  Q  E  K  A  A  D  L  R  K  A  *  S  T  Q  E  E  E  N  D  G  N  E  D  G  K  M  D  V  V  E  C  L  L  L  *  D  L  W  S  I  D  L  R  *  Q  *  L  L  *  K  F  L  F  N  L  C  N  Q  I  F  H  C  I  V  V  *  Y  F  E  L  H  *  A  *  F  K  K  L  N  Q  V  F  Q  C  I  V  N  I  V  S  L  *  L  T  Y  N  A  I  E  H  C  K  K  L  N  S  V  I  Y  *  F  L  V  M  E  R  N  L  L  P  F  F  G </second_frame>
            <third_frame>   R  S  L  Q  S  I  L  E  F  S  R  S  W  Y  L  G  D  K  P  H  L  W  S  A  A  A  Q  :  V  L  G  L  L  I  E  V  L  K  D  G  F  Q  K  Y  I  D  S  L  L  P  V  M  R  N  I  L  Q  S  A  V  N  V  L  T  N  K  Q  V  D  L  P  N  D  A  T  I  S  S  W  K  E  A  Y  Y  S  L  V  L  F  E  K  I  L  N  Q  F  P  K  L  C  F  R  K  D  F  E  :  D  L  W  E  A  I  C  E  L  L  L  H  P  H  L  W  L  R  N  I  S  N  R  L  V  A  C  Y  F  A  T  V  T  E  A  C  K  E  N  L  E  L  P  Q  G  T  Y  F  L  M  R  P  S  R  L  F  F  I  A  T  S  L  C  C  Q  L  K  V  L  Q  T  D  D  A  A  S  D  L  I  T  Q  N  L  V  F  S  I  C  S  L  H  S  F  L  G  K  T  E  C  K  D  K  F  W  S  T  I  E  H  D  E  Q  G  L  L  L  K  A  F  Q  Q  L  D  S  R  K  G  K  N  I  Y  L  S  L  V  S  D  L  S  D  Q  E  D  E  G  Q  R  Y  L  V  I  S  Y  L  L  K  T  M  G  K  I  S  L  H  V  E  D  M  Q  :  M  R  I  I  F  N  C  F  K  S  V  S  P  K  L  I  D  Q  S  R  L  L  S  P  E  G  E  V  D  C  Q  S  F  A  Y  H  M  L  L  P  L  Y  K  V  C  E  G  F  A  G  K  V  I  S   : D  D  V  K  Q  L  A  E  G  V  R  G  S  I  S  N  V  I  G  T  H  I  F  V  Q  I  Y  S  H  I  R  K  N  I  K  S  K  R  D  K  R  K  Q  E  E  K  V  I  A  V  V  N  P  M  R  N  A  K  R  K  L  R  I  S  E  K  H  K  A  H  K  K  R  K  M  M  A  M  K  M  G  R  W  M  *  *  N  V  Y  Y  Y  R  I  Y  G  A  S  I  F  D  S  S  S  F  Y  R  N  F  C  L  I  Y  V  T  K  F  S  I  V  *  W  C  N  I  L  S  C  T  K  L  S  L  K  N  *  I  K  F  F  N  V  *  *  I  *  C  L  F  D  *  P  T  M  L  *  N  I  V  R  N  *  T  L  *  F  I  D  F  *  *  W  R  G  I  F  F  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3569" stop="3489"/>
                    <exon start="3226" stop="2993"/>
                    <exon start="2080" stop="1574"/>
                    <exon start="1388" stop="1226"/>
                    <exon start="1069" stop="816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLQSILEFSRSWYLGDKPHLWSAAAQVLGLLIEVLKDGFQKYIDSLLPVMRNILQSAVNVLTNKQVDLPNDATISSWKEAYYSLVLFEKILNQFPKLCFRKDFEDLWEAICELLLHPHLWLRNISNRLVACYFATVTEACKENLELPQGTYFLMRPSRLFFIATSLCCQLKVLQTDDAASDLITQNLVFSICSLHSFLGKTECKDKFWSTIEHDEQGLLLKAFQQLDSRKGKNIYLSLVSDLSDQEDEGQRYLVISYLLKTMGKISLHVEDMQMRIIFNCFKSVSPKLIDQSRLLSPEGEVDCQSFAYHMLLPLYKVCEGFAGKVISDDVKQLAEGVRGSISNVIGTHIFVQIYSHIRKNIKSKRDKRKQEEKVIAVVNPMRNAKRKLRISEKHKAHKKRKMMAMKMGRWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21699" PGL_stop="25874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21699" e_stop="22298"/>
            <exon e_start="24175" e_stop="24609"/>
            <exon e_start="25007" e_stop="25874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21699" e_stop="22298" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22299" i_stop="24174" i_length="1876"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24175" e_stop="24609" e_length="435"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24610" i_stop="25006" i_length="397"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="25007" e_stop="25874" e_length="868"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21699" stop="22298"/>
              <exon start="24175" stop="24609"/>
              <exon start="25007" stop="25874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324388" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACCAAATTTAGGGTTAGCATATTTTGAAGCTACAGTTATATGGCTGACCGGAACAATTCATCGGCGATTACAGTGACGGCAGCGGTGAAACCGATATGGGCGAAGCAAGCGGAAGAAGCGAAGCTTAAGAGCGAAGCAGAGAAAGATGCGGCTGCGAAAGCTGCTTTCGAAGCCACTTTTAAGAACGTCGAAACTTCAGCCACTGCGGCCGCGGCCGCATCCGACAGTGACTTAGACGATGAGGAATACGAGCAGAAGAGGCTTGCGGCGAAGCCGATCGGTCCGGTTGACCCTATAAAATGCACAGCCGCTGGCACTGGAATCGCCGGTGGAACAGCGTGTGCTCCGTCAACTTTCACCGTTGTGACGAAGGATTCTGATGGTCGTAAGGTACCACATGGTGGGGCGCAGGTTAAGATTAGAGTTTCACCTGGTGTTGGAGTTGGAGGATCAGATTTGGAAGGGATTGTGAAGGATATGGGTGATGGGACATACACAGTGAGTTATATTGTTCAGAAGAGAGGAAATTATATGGTGAATGTTGAATGTAATGGGAAGCCTATCATGGGTAGTCCTTTCCCTGTTTTCTTCAGCACAG : GCAGTACGACTGGCGGGCTATTGGGTATAGTACCATCAGCCACATTTCCAAATATGGTCAACCAGAACATGCCTAATATGCCAAACTATTCTGGTTCTGTATCCGGGGCAGTTCCAGGATTGCTTGGGATGATACCAGGTATTGTTCCTGGAGCTTCTGGAGGTGTCGTTTTACCTGGAATTGGAGCATCTATTGGGGAAGTTTGCCGAGAGTACCTTTATGGACGATGCGCAAAAAGTGATTGCAAATTCAATCACCCCCCTCACAATCTTCTAATGACTGCTCTAGCTGCGACCACCAGTATGGGAACACTTAGTCAAGTGCCCATGGCACCTTCTGCGGCTGCTATGGCTGCTGCTCAGGCTATTGTTGCTGCACAAGCTCTTCAAGCGCATGCTGCTCAGGCACAAGCACAGTCTGGAAAAGATTCGTCTG : GTGACAAAGATGGTAAGGCTGAATCCCTTAAAAGAACTTTGCAAGTCAGCAATCTCAGCCCACTTCTGACAGTGGATCAGTTGAAACAGCTGTTTGGTTTCTGTGGTGCAATCATTGATTGTAGCATTACTGAATCCAAACATTTTGCTTACATCGAATACTCAAAACCCGAAGAAGCAACTGCTGCTTTAGCATTGAACAATATAGAAGTTGGTGGTCGCCCCTTAAATGTTGAAATGGCAAAACAACTTCCTCCGAAGGCAGCTGTCTTAAATTCATCAATGGGCTCTTCTTCTTTGCCCTTGATGATGCAGCAAGCGGTAGCAATGCAGCAGATGCAGTTCCAGCAAGCCTTATTAATGCAGCAAGCTATGACTGAACAACAAGCTGCTAATCGAGCTGCAACCATGAAAACTGCTACAGATTTGGCTGCCGCAAGAGCTGCAGAAATAAGCAAGATGTTGAAAGCAAACGGCCTGGTTTCTGAAGATAAGGAAACTGATGACAAGGCTAAGTATGTCACCTGAGCTATTTTTCTTATATGCTTATAATCAGTGTTTTGGGAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGAGAAGCGAAGCGCGCTTTTTTTTTAAAAAGCGACATTTAATATAAAAATAAAAAAATATTAAATAACTAAAAAGAGGTAATATAGTCTTAGATTGAAAGAAATTACTTAGGCAAAAATACTCACAAGTCATAACATATAAAGCAAAAAATCAAAAACATAATTAAATCACAAAATACTACAAACAAAAGGAAGTTTCAGAAAATAATAAAAAAAGGCTGCTAGTATACACACTGATCACAAAAAAAAACCA</gDNA_template>
            <first_frame> *  P  N  L  G  L  A  Y  F  E  A  T  V  I  W  L  T  G  T  I  H  R  R  L  Q  *  R  Q  R  *  N  R  Y  G  R  S  K  R  K  K  R  S  L  R  A  K  Q  R  K  M  R  L  R  K  L  L  S  K  P  L  L  R  T  S  K  L  Q  P  L  R  P  R  P  H  P  T  V  T  *  T  M  R  N  T  S  R  R  G  L  R  R  S  R  S  V  R  L  T  L  *  N  A  Q  P  L  A  L  E  S  P  V  E  Q  R  V  L  R  Q  L  S  P  L  *  R  R  I  L  M  V  V  R  Y  H  M  V  G  R  R  L  R  L  E  F  H  L  V  L  E  L  E  D  Q  I  W  K  G  L  *  R  I  W  V  M  G  H  T  Q  *  V  I  L  F  R  R  E  E  I  I  W  *  M  L  N  V  M  G  S  L  S  W  V  V  L  S  L  F  S  S  A  Q  :  A  V  R  L  A  G  Y  W  V  *  Y  H  Q  P  H  F  Q  I  W  S  T  R  T  C  L  I  C  Q  T  I  L  V  L  Y  P  G  Q  F  Q  D  C  L  G  *  Y  Q  V  L  F  L  E  L  L  E  V  S  F  Y  L  E  L  E  H  L  L  G  K  F  A  E  S  T  F  M  D  D  A  Q  K  V  I  A  N  S  I  T  P  L  T  I  F  *  *  L  L  *  L  R  P  P  V  W  E  H  L  V  K  C  P  W  H  L  L  R  L  L  W  L  L  L  R  L  L  L  L  H  K  L  F  K  R  M  L  L  R  H  K  H  S  L  E  K  I  R  L  :  V  T  K  M  V  R  L  N  P  L  K  E  L  C  K  S  A  I  S  A  H  F  *  Q  W  I  S  *  N  S  C  L  V  S  V  V  Q  S  L  I  V  A  L  L  N  P  N  I  L  L  T  S  N  T  Q  N  P  K  K  Q  L  L  L  *  H  *  T  I  *  K  L  V  V  A  P  *  M  L  K  W  Q  N  N  F  L  R  R  Q  L  S  *  I  H  Q  W  A  L  L  L  C  P  *  *  C  S  K  R  *  Q  C  S  R  C  S  S  S  K  P  Y  *  C  S  K  L  *  L  N  N  K  L  L  I  E  L  Q  P  *  K  L  L  Q  I  W  L  P  Q  E  L  Q  K  *  A  R  C  *  K  Q  T  A  W  F  L  K  I  R  K  L  M  T  R  L  S  M  S  P  E  L  F  F  L  Y  A  Y  N  Q  C  F  G  K  R  E  A  E  K  S  D  E  G  L  L  H  R  S  E  K  R  E  A  K  R  A  F  F  L  K  S  D  I  *  Y  K  N  K  K  I  L  N  N  *  K  E  V  I  *  S  *  I  E  R  N  Y  L  G  K  N  T  H  K  S  *  H  I  K  Q  K  I  K  N  I  I  K  S  Q  N  T  T  N  K  R  K  F  Q  K  I  I  K  K  G  C  *  Y  T  H  *  S  Q  K  K  T  </first_frame>
            <second_frame>  D  Q  I  *  G  *  H  I  L  K  L  Q  L  Y  G  *  P  E  Q  F  I  G  D  Y  S  D  G  S  G  E  T  D  M  G  E  A  S  G  R  S  E  A  *  E  R  S  R  E  R  C  G  C  E  S  C  F  R  S  H  F  *  E  R  R  N  F  S  H  C  G  R  G  R  I  R  Q  *  L  R  R  *  G  I  R  A  E  E  A  C  G  E  A  D  R  S  G  *  P  Y  K  M  H  S  R  W  H  W  N  R  R  W  N  S  V  C  S  V  N  F  H  R  C  D  E  G  F  *  W  S  *  G  T  T  W  W  G  A  G  *  D  *  S  F  T  W  C  W  S  W  R  I  R  F  G  R  D  C  E  G  Y  G  *  W  D  I  H  S  E  L  Y  C  S  E  E  R  K  L  Y  G  E  C  *  M  *  W  E  A  Y  H  G  *  S  F  P  C  F  L  Q  H  R :   Q  Y  D  W  R  A  I  G  Y  S  T  I  S  H  I  S  K  Y  G  Q  P  E  H  A  *  Y  A  K  L  F  W  F  C  I  R  G  S  S  R  I  A  W  D  D  T  R  Y  C  S  W  S  F  W  R  C  R  F  T  W  N  W  S  I  Y  W  G  S  L  P  R  V  P  L  W  T  M  R  K  K  *  L  Q  I  Q  S  P  P  S  Q  S  S  N  D  C  S  S  C  D  H  Q  Y  G  N  T  *  S  S  A  H  G  T  F  C  G  C  Y  G  C  C  S  G  Y  C  C  C  T  S  S  S  S  A  C  C  S  G  T  S  T  V  W  K  R  F  V  W :   *  Q  R  W  *  G  *  I  P  *  K  N  F  A  S  Q  Q  S  Q  P  T  S  D  S  G  S  V  E  T  A  V  W  F  L  W  C  N  H  *  L  *  H  Y  *  I  Q  T  F  C  L  H  R  I  L  K  T  R  R  S  N  C  C  F  S  I  E  Q  Y  R  S  W  W  S  P  L  K  C  *  N  G  K  T  T  S  S  E  G  S  C  L  K  F  I  N  G  L  F  F  F  A  L  D  D  A  A  S  G  S  N  A  A  D  A  V  P  A  S  L  I  N  A  A  S  Y  D  *  T  T  S  C  *  S  S  C  N  H  E  N  C  Y  R  F  G  C  R  K  S  C  R  N  K  Q  D  V  E  S  K  R  P  G  F  *  R  *  G  N  *  *  Q  G  *  V  C  H  L  S  Y  F  S  Y  M  L  I  I  S  V  L  G  S  E  K  R  K  K  A  T  R  A  C  F  T  E  A  R  S  E  K  R  S  A  L  F  F  *  K  A  T  F  N  I  K  I  K  K  Y  *  I  T  K  K  R  *  Y  S  L  R  L  K  E  I  T  *  A  K  I  L  T  S  H  N  I  *  S  K  K  S  K  T  *  L  N  H  K  I  L  Q  T  K  G  S  F  R  K  *  *  K  K  A  A  S  I  H  T  D  H  K  K  K  P </second_frame>
            <third_frame>   T  K  F  R  V  S  I  F  *  S  Y  S  Y  M  A  D  R  N  N  S  S  A  I  T  V  T  A  A  V  K  P  I  W  A  K  Q  A  E  E  A  K  L  K  S  E  A  E  K  D  A  A  A  K  A  A  F  E  A  T  F  K  N  V  E  T  S  A  T  A  A  A  A  A  S  D  S  D  L  D  D  E  E  Y  E  Q  K  R  L  A  A  K  P  I  G  P  V  D  P  I  K  C  T  A  A  G  T  G  I  A  G  G  T  A  C  A  P  S  T  F  T  V  V  T  K  D  S  D  G  R  K  V  P  H  G  G  A  Q  V  K  I  R  V  S  P  G  V  G  V  G  G  S  D  L  E  G  I  V  K  D  M  G  D  G  T  Y  T  V  S  Y  I  V  Q  K  R  G  N  Y  M  V  N  V  E  C  N  G  K  P  I  M  G  S  P  F  P  V  F  F  S  T   : G  S  T  T  G  G  L  L  G  I  V  P  S  A  T  F  P  N  M  V  N  Q  N  M  P  N  M  P  N  Y  S  G  S  V  S  G  A  V  P  G  L  L  G  M  I  P  G  I  V  P  G  A  S  G  G  V  V  L  P  G  I  G  A  S  I  G  E  V  C  R  E  Y  L  Y  G  R  C  A  K  S  D  C  K  F  N  H  P  P  H  N  L  L  M  T  A  L  A  A  T  T  S  M  G  T  L  S  Q  V  P  M  A  P  S  A  A  A  M  A  A  A  Q  A  I  V  A  A  Q  A  L  Q  A  H  A  A  Q  A  Q  A  Q  S  G  K  D  S  S   : G  D  K  D  G  K  A  E  S  L  K  R  T  L  Q  V  S  N  L  S  P  L  L  T  V  D  Q  L  K  Q  L  F  G  F  C  G  A  I  I  D  C  S  I  T  E  S  K  H  F  A  Y  I  E  Y  S  K  P  E  E  A  T  A  A  L  A  L  N  N  I  E  V  G  G  R  P  L  N  V  E  M  A  K  Q  L  P  P  K  A  A  V  L  N  S  S  M  G  S  S  S  L  P  L  M  M  Q  Q  A  V  A  M  Q  Q  M  Q  F  Q  Q  A  L  L  M  Q  Q  A  M  T  E  Q  Q  A  A  N  R  A  A  T  M  K  T  A  T  D  L  A  A  A  R  A  A  E  I  S  K  M  L  K  A  N  G  L  V  S  E  D  K  E  T  D  D  K  A  K  Y  V  T  *  A  I  F  L  I  C  L  *  S  V  F  W  E  A  R  S  G  K  K  R  R  G  L  A  S  Q  K  R  E  A  R  S  E  A  R  F  F  F  K  K  R  H  L  I  *  K  *  K  N  I  K  *  L  K  R  G  N  I  V  L  D  *  K  K  L  L  R  Q  K  Y  S  Q  V  I  T  Y  K  A  K  N  Q  K  H  N  *  I  T  K  Y  Y  K  Q  K  E  V  S  E  N  N  K  K  R  L  L  V  Y  T  L  I  T  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21728" stop="22298"/>
                    <exon start="24175" stop="24609"/>
                    <exon start="25007" stop="25533"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSYMADRNNSSAITVTAAVKPIWAKQAEEAKLKSEAEKDAAAKAAFEATFKNVETSATAAAAASDSDLDDEEYEQKRLAAKPIGPVDPIKCTAAGTGIAGGTACAPSTFTVVTKDSDGRKVPHGGAQVKIRVSPGVGVGGSDLEGIVKDMGDGTYTVSYIVQKRGNYMVNVECNGKPIMGSPFPVFFSTGSTTGGLLGIVPSATFPNMVNQNMPNMPNYSGSVSGAVPGLLGMIPGIVPGASGGVVLPGIGASIGEVCREYLYGRCAKSDCKFNHPPHNLLMTALAATTSMGTLSQVPMAPSAAAMAAAQAIVAAQALQAHAAQAQAQSGKDSSGDKDGKAESLKRTLQVSNLSPLLTVDQLKQLFGFCGAIIDCSITESKHFAYIEYSKPEEATAALALNNIEVGGRPLNVEMAKQLPPKAAVLNSSMGSSSLPLMMQQAVAMQQMQFQQALLMQQAMTEQQAANRAATMKTATDLAAARAAEISKMLKANGLVSEDKETDDKAKYVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27576" PGL_stop="30579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27576" e_stop="28708"/>
            <exon e_start="29102" e_stop="29171"/>
            <exon e_start="29387" e_stop="29516"/>
            <exon e_start="30131" e_stop="30579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.233" acc_prob="0.921" e_score="0.999"/>
          <exon-intron don_prob="0.166" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="27576" e_stop="28708" e_length="1133"/>
          </exon>
          <intron i_serial="1" don_prob="0.233" acc_prob="0.921">
            <gDNA_intron_boundary i_start="28709" i_stop="29101" i_length="393"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29102" e_stop="29171" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.166" acc_prob="0.980">
            <gDNA_intron_boundary i_start="29172" i_stop="29386" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29387" e_stop="29516" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29517" i_stop="30130" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="30131" e_stop="30579" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27576" stop="28708"/>
              <exon start="29102" stop="29171"/>
              <exon start="29387" stop="29516"/>
              <exon start="30131" stop="30579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAACATAGACGAAAAAGTAGGTCATCCCCAAAAGATGGTGAAAGAAAATCAAAATATAGCAGGCGGTCCAGATCAAAGTCTGCTGAATTTAGGGACCAGTCTGATGATAAGCTAGAACGAAGCAAGGGTGAGAAAACCAGGCAGAAGGATCAAAGAAGGTCAGCATCACCACAGGTTGATGAGGATGCACAGAAGAAAATGTCACCAGAAGTTGTGGAAGAAAGCAAGTCAAAGCAGAGAAGAGCCTCCAGGTCCAGATCTCCAGAAGAGAAGCATCTTTCTAGCAGAAGCAGAGAAGAGAAAAGAAAGCATCATGCTAGAAGGCGCTCCAGGTCAAGGTCCAAATCTCCTGAAGAGAAAGTTCACTCAAGTGATAAATTAGACAGAAATAAAGGAGATAAACGAAAGCATCGAAGTAGAAGGCACTCAAAGTCAAGGTCCAGATCTCCTGAAGAAAAACAACATTCAAGTGCTAAATTGGAAAGGAGCAGAAAAGAGAAATCAAAGAGTCGAAGTAAAAGGCGCTCCAGGTCAAGATCTGTCGATGAGAAGCAGCATGGAACTAAACAGTCAGCAAGCCATTCTGACAGCCGACGATCAAAGCAAAGAGCACGTTCTAGATCAAATTCTTCTGAAAGTAGGCATGGATCAGGTCAAGATGAAACCTTAAAGGATGAAGGGAGAGGTCATAGGGGTCACCAGAAAAGATCGAGGCAGGATGACAATAATCATGGAACAACTGAGATTAGCTTGATGGAAGAAGAGGGAATGTAAACCAGTGACCGATAGCTTCCAATTCAAAGAGTTCTGAATCTATGGGTTATGGCTTGTGATACTCAATTGTGTGAACATTTTATTTTACCATTGCAGAAAACATGAGAAGTTTTGAGGAAGCATGATGTCCTGGAAGATCGTGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCAGTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTGCTGAGTTTCTTGTGAACTACTTTTTGAGCTCAT : GTCTTGGGACTGGTTCTTGTTGGCGCTTTATCAATTGAATGGACAAAGTTATATCTGATTGTATTTGAAG : GCAGGCTGCTATTAAGGTTAATGTAACCAGATGTTGCTGAGATGATTGTGCATGATGCTCCCTGAATCGAGCATGAAACAGATACTCATATCTGTTCTTTAATTGGTGGAACTCAATTGTTCCATAACAG : GTGGTGCTGGATGTATGGGACTGAGAGCTGTATCCTGTTGTCAATCTAGATGTGGTTGATGTCACACACTTATAATTTGCTTCCCTTCCCCCTTCCTTTTTCATTTACATTCATGTTTACCCTTCCCCGTCTTTCATCTCTGCTTCTCTCCCTTGTTTTCCTCTTTTTGTTTTTTGGGGTGGTTGGAGGTTCTATAAGGAGTAGTATGACTAGCTAAATGGCACAAGCAGCAAGGCGAGGAAACATTAATTTTGGCTGGTGATTTGACAATGTATTTTTGCTAGGATTTTTTTGTTTGGACAAGGATTATAGCTCAAGAGTAGAATCTTCGTTTAGGTGTGTATGGGCCATCTATGAAATAAAAATCAGCAGATGTTTTTCAGTAGTCTTCTTCCTTTGCATGTTAAAGGTTAAATATACCCACATAATGTTTATCATCCTTATTTCCC</gDNA_template>
            <first_frame> *  T  *  T  K  K  *  V  I  P  K  R  W  *  K  K  I  K  I  *  Q  A  V  Q  I  K  V  C  *  I  *  G  P  V  *  *  *  A  R  T  K  Q  G  *  E  N  Q  A  E  G  S  K  K  V  S  I  T  T  G  *  *  G  C  T  E  E  N  V  T  R  S  C  G  R  K  Q  V  K  A  E  K  S  L  Q  V  Q  I  S  R  R  E  A  S  F  *  Q  K  Q  R  R  E  K  K  A  S  C  *  K  A  L  Q  V  K  V  Q  I  S  *  R  E  S  S  L  K  *  *  I  R  Q  K  *  R  R  *  T  K  A  S  K  *  K  A  L  K  V  K  V  Q  I  S  *  R  K  T  T  F  K  C  *  I  G  K  E  Q  K  R  E  I  K  E  S  K  *  K  A  L  Q  V  K  I  C  R  *  E  A  A  W  N  *  T  V  S  K  P  F  *  Q  P  T  I  K  A  K  S  T  F  *  I  K  F  F  *  K  *  A  W  I  R  S  R  *  N  L  K  G  *  R  E  R  S  *  G  S  P  E  K  I  E  A  G  *  Q  *  S  W  N  N  *  D  *  L  D  G  R  R  G  N  V  N  Q  *  P  I  A  S  N  S  K  S  S  E  S  M  G  Y  G  L  *  Y  S  I  V  *  T  F  Y  F  T  I  A  E  N  M  R  S  F  E  E  A  *  C  P  G  R  S  *  S  Q  H  R  L  T  R  *  S  R  K  I  C  *  T  E  L  I  A  V  C  M  T  K  T  P  I  F  A  S  F  A  G  P  S  W  N  I  T  R  K  *  S  S  I  S  *  K  V  E  C  Q  V  C  A  I  L  D  E  L  C  *  V  S  C  E  L  L  F  E  L  M :   S  W  D  W  F  L  L  A  L  Y  Q  L  N  G  Q  S  Y  I  *  L  Y  L  K  :  A  G  C  Y  *  G  *  C  N  Q  M  L  L  R  *  L  C  M  M  L  P  E  S  S  M  K  Q  I  L  I  S  V  L  *  L  V  E  L  N  C  S  I  T   : G  G  A  G  C  M  G  L  R  A  V  S  C  C  Q  S  R  C  G  *  C  H  T  L  I  I  C  F  P  S  P  F  L  F  H  L  H  S  C  L  P  F  P  V  F  H  L  C  F  S  P  L  F  S  S  F  C  F  L  G  W  L  E  V  L  *  G  V  V  *  L  A  K  W  H  K  Q  Q  G  E  E  T  L  I  L  A  G  D  L  T  M  Y  F  C  *  D  F  F  V  W  T  R  I  I  A  Q  E  *  N  L  R  L  G  V  Y  G  P  S  M  K  *  K  S  A  D  V  F  Q  *  S  S  S  F  A  C  *  R  L  N  I  P  T  *  C  L  S  S  L  F  P </first_frame>
            <second_frame>  E  H  R  R  K  S  R  S  S  P  K  D  G  E  R  K  S  K  Y  S  R  R  S  R  S  K  S  A  E  F  R  D  Q  S  D  D  K  L  E  R  S  K  G  E  K  T  R  Q  K  D  Q  R  R  S  A  S  P  Q  V  D  E  D  A  Q  K  K  M  S  P  E  V  V  E  E  S  K  S  K  Q  R  R  A  S  R  S  R  S  P  E  E  K  H  L  S  S  R  S  R  E  E  K  R  K  H  H  A  R  R  R  S  R  S  R  S  K  S  P  E  E  K  V  H  S  S  D  K  L  D  R  N  K  G  D  K  R  K  H  R  S  R  R  H  S  K  S  R  S  R  S  P  E  E  K  Q  H  S  S  A  K  L  E  R  S  R  K  E  K  S  K  S  R  S  K  R  R  S  R  S  R  S  V  D  E  K  Q  H  G  T  K  Q  S  A  S  H  S  D  S  R  R  S  K  Q  R  A  R  S  R  S  N  S  S  E  S  R  H  G  S  G  Q  D  E  T  L  K  D  E  G  R  G  H  R  G  H  Q  K  R  S  R  Q  D  D  N  N  H  G  T  T  E  I  S  L  M  E  E  E  G  M  *  T  S  D  R  *  L  P  I  Q  R  V  L  N  L  W  V  M  A  C  D  T  Q  L  C  E  H  F  I  L  P  L  Q  K  T  *  E  V  L  R  K  H  D  V  L  E  D  R  D  P  N  I  D  *  P  D  D  Q  E  R  S  V  R  L  N  *  L  Q  F  V  *  Q  K  R  L  F  L  L  L  L  Q  V  L  H  G  T  *  P  E  S  E  V  A  L  V  E  R  L  S  V  K  F  V  P  S  W  M  N  S  A  E  F  L  V  N  Y  F  L  S  S   : C  L  G  T  G  S  C  W  R  F  I  N  *  M  D  K  V  I  S  D  C  I  *  R :   Q  A  A  I  K  V  N  V  T  R  C  C  *  D  D  C  A  *  C  S  L  N  R  A  *  N  R  Y  S  Y  L  F  F  N  W  W  N  S  I  V  P  *  Q  :  V  V  L  D  V  W  D  *  E  L  Y  P  V  V  N  L  D  V  V  D  V  T  H  L  *  F  A  S  L  P  P  S  F  F  I  Y  I  H  V  Y  P  S  P  S  F  I  S  A  S  L  P  C  F  P  L  F  V  F  W  G  G  W  R  F  Y  K  E  *  Y  D  *  L  N  G  T  S  S  K  A  R  K  H  *  F  W  L  V  I  *  Q  C  I  F  A  R  I  F  L  F  G  Q  G  L  *  L  K  S  R  I  F  V  *  V  C  M  G  H  L  *  N  K  N  Q  Q  M  F  F  S  S  L  L  P  L  H  V  K  G  *  I  Y  P  H  N  V  Y  H  P  Y  F   </second_frame>
            <third_frame>   N  I  D  E  K  V  G  H  P  Q  K  M  V  K  E  N  Q  N  I  A  G  G  P  D  Q  S  L  L  N  L  G  T  S  L  M  I  S  *  N  E  A  R  V  R  K  P  G  R  R  I  K  E  G  Q  H  H  H  R  L  M  R  M  H  R  R  K  C  H  Q  K  L  W  K  K  A  S  Q  S  R  E  E  P  P  G  P  D  L  Q  K  R  S  I  F  L  A  E  A  E  K  R  K  E  S  I  M  L  E  G  A  P  G  Q  G  P  N  L  L  K  R  K  F  T  Q  V  I  N  *  T  E  I  K  E  I  N  E  S  I  E  V  E  G  T  Q  S  Q  G  P  D  L  L  K  K  N  N  I  Q  V  L  N  W  K  G  A  E  K  R  N  Q  R  V  E  V  K  G  A  P  G  Q  D  L  S  M  R  S  S  M  E  L  N  S  Q  Q  A  I  L  T  A  D  D  Q  S  K  E  H  V  L  D  Q  I  L  L  K  V  G  M  D  Q  V  K  M  K  P  *  R  M  K  G  E  V  I  G  V  T  R  K  D  R  G  R  M  T  I  I  M  E  Q  L  R  L  A  *  W  K  K  R  E  C  K  P  V  T  D  S  F  Q  F  K  E  F  *  I  Y  G  L  W  L  V  I  L  N  C  V  N  I  L  F  Y  H  C  R  K  H  E  K  F  *  G  S  M  M  S  W  K  I  V  I  P  T  *  I  D  P  M  I  K  K  D  L  L  D  *  I  N  C  S  L  Y  D  K  N  A  Y  F  C  F  F  C  R  S  F  M  E  H  N  Q  K  V  K  *  H  *  L  K  G  *  V  S  S  L  C  H  L  G  *  T  L  L  S  F  L  *  T  T  F  *  A  H  :  V  L  G  L  V  L  V  G  A  L  S  I  E  W  T  K  L  Y  L  I  V  F  E   : G  R  L  L  L  R  L  M  *  P  D  V  A  E  M  I  V  H  D  A  P  *  I  E  H  E  T  D  T  H  I  C  S  L  I  G  G  T  Q  L  F  H  N  R :   W  C  W  M  Y  G  T  E  S  C  I  L  L  S  I  *  M  W  L  M  S  H  T  Y  N  L  L  P  F  P  L  P  F  S  F  T  F  M  F  T  L  P  R  L  S  S  L  L  L  S  L  V  F  L  F  L  F  F  G  V  V  G  G  S  I  R  S  S  M  T  S  *  M  A  Q  A  A  R  R  G  N  I  N  F  G  W  *  F  D  N  V  F  L  L  G  F  F  C  L  D  K  D  Y  S  S  R  V  E  S  S  F  R  C  V  W  A  I  Y  E  I  K  I  S  R  C  F  S  V  V  F  F  L  C  M  L  K  V  K  Y  T  H  I  M  F  I  I  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27577" stop="28350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHRRKSRSSPKDGERKSKYSRRSRSKSAEFRDQSDDKLERSKGEKTRQKDQRRSASPQVDEDAQKKMSPEVVEESKSKQRRASRSRSPEEKHLSSRSREEKRKHHARRRSRSRSKSPEEKVHSSDKLDRNKGDKRKHRSRRHSKSRSRSPEEKQHSSAKLERSRKEKSKSRSKRRSRSRSVDEKQHGTKQSASHSDSRRSKQRARSRSNSSESRHGSGQDETLKDEGRGHRGHQKRSRQDDNNHGTTEISLMEEEGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28491" e_stop="28986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="28491" e_stop="28986" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28491" stop="28986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336775" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCCCAACATAGATTGACCCGATGATCAAGAAAGATCTGTTAGACTGAATTAATTGCAGTTTGTATGACAAAAACGCCTATTTTTGCTTCTTTTGCAGGTCCTTCATGGAACATAACCAGAAAGTGAAGTAGCATTAGTTGAAAGGTTGAGTGTCAAGTTTGTGCCATCTTGGATGAACTCTGCTGAGTTTCTTGTGAACTACTTTTTGAGCTCATGTATGGTGAACTTTTACCTCTGTCAGTAGGTAGTAATTTCTTAATTGTATGTCTATTTGAGGATTTTAATTACCCCTTGTCCTTCTAGTAATCTCAATATTGTGAAGGAAGGTATATATATCAACTATCCTTTCTTGTGAGGGAATTGTGCCTTCCACTGAAGAATTTGAATGTCCTTGAGCATTATGTTCTCATATCCTGTACTCATTAACTGATGTGAACTAATGATAGGGTAGTTTCATAAAGCTTTCTAATTAAGTAGCTTAGTCGTCTTGTGA</gDNA_template>
            <first_frame> *  S  Q  H  R  L  T  R  *  S  R  K  I  C  *  T  E  L  I  A  V  C  M  T  K  T  P  I  F  A  S  F  A  G  P  S  W  N  I  T  R  K  *  S  S  I  S  *  K  V  E  C  Q  V  C  A  I  L  D  E  L  C  *  V  S  C  E  L  L  F  E  L  M  Y  G  E  L  L  P  L  S  V  G  S  N  F  L  I  V  C  L  F  E  D  F  N  Y  P  L  S  F  *  *  S  Q  Y  C  E  G  R  Y  I  Y  Q  L  S  F  L  V  R  E  L  C  L  P  L  K  N  L  N  V  L  E  H  Y  V  L  I  S  C  T  H  *  L  M  *  T  N  D  R  V  V  S  *  S  F  L  I  K  *  L  S  R  L  V  </first_frame>
            <second_frame>  D  P  N  I  D  *  P  D  D  Q  E  R  S  V  R  L  N  *  L  Q  F  V  *  Q  K  R  L  F  L  L  L  L  Q  V  L  H  G  T  *  P  E  S  E  V  A  L  V  E  R  L  S  V  K  F  V  P  S  W  M  N  S  A  E  F  L  V  N  Y  F  L  S  S  C  M  V  N  F  Y  L  C  Q  *  V  V  I  S  *  L  Y  V  Y  L  R  I  L  I  T  P  C  P  S  S  N  L  N  I  V  K  E  G  I  Y  I  N  Y  P  F  L  *  G  N  C  A  F  H  *  R  I  *  M  S  L  S  I  M  F  S  Y  P  V  L  I  N  *  C  E  L  M  I  G  *  F  H  K  A  F  *  L  S  S  L  V  V  L  * </second_frame>
            <third_frame>   I  P  T  *  I  D  P  M  I  K  K  D  L  L  D  *  I  N  C  S  L  Y  D  K  N  A  Y  F  C  F  F  C  R  S  F  M  E  H  N  Q  K  V  K  *  H  *  L  K  G  *  V  S  S  L  C  H  L  G  *  T  L  L  S  F  L  *  T  T  F  *  A  H  V  W  *  T  F  T  S  V  S  R  *  *  F  L  N  C  M  S  I  *  G  F  *  L  P  L  V  L  L  V  I  S  I  L  *  R  K  V  Y  I  S  T  I  L  S  C  E  G  I  V  P  S  T  E  E  F  E  C  P  *  A  L  C  S  H  I  L  Y  S  L  T  D  V  N  *  *  *  G  S  F  I  K  L  S  N  *  V  A  *  S  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0165P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30498" PGL_stop="28700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30498" e_stop="30479"/>
            <exon e_start="28844" e_stop="28700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.745" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.550">
            <gDNA_exon_boundary e_start="30498" e_stop="30479" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.745" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30478" i_stop="28845" i_length="1634"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="28844" e_stop="28700" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30498" stop="30479"/>
              <exon start="28844" stop="28700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTTTATTTCATAGATG : AAGAAAGGATAGTTGATATATATACCTTCCTTCACAATATTGAGATTACTAGAAGGACAAGGGGTAATTAAAATCCTCAAATAGACATACAATTAAGAAATTACTACCTACTGACAGAGGTAAAAGTTCACCATACATGAGCTCA</gDNA_template>
            <first_frame> *  F  L  F  H  R  * :   R  K  D  S  *  Y  I  Y  L  P  S  Q  Y  *  D  Y  *  K  D  K  G  *  L  K  S  S  N  R  H  T  I  K  K  L  L  P  T  D  R  G  K  S  S  P  Y  M  S  S </first_frame>
            <second_frame>  D  F  Y  F  I  D   : E  E  R  I  V  D  I  Y  T  F  L  H  N  I  E  I  T  R  R  T  R  G  N  *  N  P  Q  I  D  I  Q  L  R  N  Y  Y  L  L  T  E  V  K  V  H  H  T  *  A   </second_frame>
            <third_frame>   I  F  I  S  *  M  :  K  K  G  *  L  I  Y  I  P  S  F  T  I  L  R  L  L  E  G  Q  G  V  I  K  I  L  K  *  T  Y  N  *  E  I  T  T  Y  *  Q  R  *  K  F  T  I  H  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0165P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32437" PGL_stop="34337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32437" e_stop="32835"/>
            <exon e_start="33652" e_stop="33951"/>
            <exon e_start="34318" e_stop="34337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.342" e_score="1.000"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32437" e_stop="32835" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.970">
            <gDNA_intron_boundary i_start="32836" i_stop="33651" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33652" e_stop="33951" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.342">
            <gDNA_intron_boundary i_start="33952" i_stop="34317" i_length="366"/>
          </intron>
          <exon e_serial="3" e_score="0.550">
            <gDNA_exon_boundary e_start="34318" e_stop="34337" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32437" stop="32835"/>
              <exon start="33652" stop="33951"/>
              <exon start="34318" stop="34337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAAAAATGTATCTAAGAACCCCAATAGATCGTGTCCTATTTTCCCCATCAAATCCCCAATTTTCAAGAACTCAAAAAGTGTCTTTTAGAGTAAACTCAAAACTTAACAACAATGTGATAGAAATTAGTGAATCAAAAAGCTTTTATGAGCTTTTGGGTATTCAAGAAACTGTTTCTTTATTAGAAATTAAACAAGCGTACAAACAATTAGCAAGAAAGTACCACCCAGATGTTTCACCTCCGGGTCGGGTCGAAGAAAATACCCAAAGGTTTATTCGGGTTCAAGAGGCTTATGAGACATTATCGGATCCTAAATCAAGAGATATGTATGACAAACATATGTCTAAAGGACTTCATTTTGCATTTTCTCCTCGTAGAAAGTGCCAAAATGATGAG : TCAATGGAGAACACCGGTGAATGGAAGAATCGATGGCATTCTCAGCTATCGGAGTTGAAAAGAAGAAACTCACACAAGGACTCTGGTAACAATATGTCATGGGGTGCACATATGCGTAGACAAAGGAGTGAAACATCGTTATAACGAATTATATAGTTTTTATATATTGCTTATATATAATTTGAAGTGTTTGGTTAAGCATTGATGTTATAAGTAGTGTAACAACTATATGTAAGTGCTGACCAAATATAGGTAACTGTTTGTACATAAGAGTTCTTTGAATCAAGTTGTTATTTTTAA : ATAAAATTACTAATATCACA</gDNA_template>
            <first_frame> K  K  K  M  Y  L  R  T  P  I  D  R  V  L  F  S  P  S  N  P  Q  F  S  R  T  Q  K  V  S  F  R  V  N  S  K  L  N  N  N  V  I  E  I  S  E  S  K  S  F  Y  E  L  L  G  I  Q  E  T  V  S  L  L  E  I  K  Q  A  Y  K  Q  L  A  R  K  Y  H  P  D  V  S  P  P  G  R  V  E  E  N  T  Q  R  F  I  R  V  Q  E  A  Y  E  T  L  S  D  P  K  S  R  D  M  Y  D  K  H  M  S  K  G  L  H  F  A  F  S  P  R  R  K  C  Q  N  D  E  :  S  M  E  N  T  G  E  W  K  N  R  W  H  S  Q  L  S  E  L  K  R  R  N  S  H  K  D  S  G  N  N  M  S  W  G  A  H  M  R  R  Q  R  S  E  T  S  L  *  R  I  I  *  F  L  Y  I  A  Y  I  *  F  E  V  F  G  *  A  L  M  L  *  V  V  *  Q  L  Y  V  S  A  D  Q  I  *  V  T  V  C  T  *  E  F  F  E  S  S  C  Y  F  *  :  I  K  L  L  I  S   </first_frame>
            <second_frame>  R  K  K  C  I  *  E  P  Q  *  I  V  S  Y  F  P  H  Q  I  P  N  F  Q  E  L  K  K  C  L  L  E  *  T  Q  N  L  T  T  M  *  *  K  L  V  N  Q  K  A  F  M  S  F  W  V  F  K  K  L  F  L  Y  *  K  L  N  K  R  T  N  N  *  Q  E  S  T  T  Q  M  F  H  L  R  V  G  S  K  K  I  P  K  G  L  F  G  F  K  R  L  M  R  H  Y  R  I  L  N  Q  E  I  C  M  T  N  I  C  L  K  D  F  I  L  H  F  L  L  V  E  S  A  K  M  M  S :   Q  W  R  T  P  V  N  G  R  I  D  G  I  L  S  Y  R  S  *  K  E  E  T  H  T  R  T  L  V  T  I  C  H  G  V  H  I  C  V  D  K  G  V  K  H  R  Y  N  E  L  Y  S  F  Y  I  L  L  I  Y  N  L  K  C  L  V  K  H  *  C  Y  K  *  C  N  N  Y  M  *  V  L  T  K  Y  R  *  L  F  V  H  K  S  S  L  N  Q  V  V  I  F  K :   *  N  Y  *  Y  H  </second_frame>
            <third_frame>   E  K  N  V  S  K  N  P  N  R  S  C  P  I  F  P  I  K  S  P  I  F  K  N  S  K  S  V  F  *  S  K  L  K  T  *  Q  Q  C  D  R  N  *  *  I  K  K  L  L  *  A  F  G  Y  S  R  N  C  F  F  I  R  N  *  T  S  V  Q  T  I  S  K  K  V  P  P  R  C  F  T  S  G  S  G  R  R  K  Y  P  K  V  Y  S  G  S  R  G  L  *  D  I  I  G  S  *  I  K  R  Y  V  *  Q  T  Y  V  *  R  T  S  F  C  I  F  S  S  *  K  V  P  K  *  *   : V  N  G  E  H  R  *  M  E  E  S  M  A  F  S  A  I  G  V  E  K  K  K  L  T  Q  G  L  W  *  Q  Y  V  M  G  C  T  Y  A  *  T  K  E  *  N  I  V  I  T  N  Y  I  V  F  I  Y  C  L  Y  I  I  *  S  V  W  L  S  I  D  V  I  S  S  V  T  T  I  C  K  C  *  P  N  I  G  N  C  L  Y  I  R  V  L  *  I  K  L  L  F  L   : N  K  I  T  N  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32437" stop="32835"/>
                    <exon start="33652" stop="33795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKMYLRTPIDRVLFSPSNPQFSRTQKVSFRVNSKLNNNVIEISESKSFYELLGIQETVSLLEIKQAYKQLARKYHPDVSPPGRVEENTQRFIRVQEAYETLSDPKSRDMYDKHMSKGLHFAFSPRRKCQNDESMENTGEWKNRWHSQLSELKRRNSHKDSGNNMSWGAHMRRQRSETSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39215" PGL_stop="39487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39215" e_stop="39487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="39215" e_stop="39487" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39215" stop="39487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTAATAGAGAAAAAGACCGTTATTATTTCAATAGCACAAATAAAATAAGTTCTAAAGTCCAACTTTAATAAATCTAGCAAACCAACACCACAATTAAACCAAAATAAACTATGAAACAAGAATTGAAACAAATACTTCTTATTCCAACCAATATGCTATTTTGAGACTCCGCCTAAGCGATTACACTGAACATGTTGTTGTTGTTCAAGCAATAGACCATTCGTTGTTTAGCTCATTTTTCAACTTCATTATCTCATCCACGGGCAAAGT</gDNA_template>
            <first_frame> I  L  I  E  K  K  T  V  I  I  S  I  A  Q  I  K  *  V  L  K  S  N  F  N  K  S  S  K  P  T  P  Q  L  N  Q  N  K  L  *  N  K  N  *  N  K  Y  F  L  F  Q  P  I  C  Y  F  E  T  P  P  K  R  L  H  *  T  C  C  C  C  S  S  N  R  P  F  V  V  *  L  I  F  Q  L  H  Y  L  I  H  G  Q  S </first_frame>
            <second_frame>  F  *  *  R  K  R  P  L  L  F  Q  *  H  K  *  N  K  F  *  S  P  T  L  I  N  L  A  N  Q  H  H  N  *  T  K  I  N  Y  E  T  R  I  E  T  N  T  S  Y  S  N  Q  Y  A  I  L  R  L  R  L  S  D  Y  T  E  H  V  V  V  V  Q  A  I  D  H  S  L  F  S  S  F  F  N  F  I  I  S  S  T  G  K   </second_frame>
            <third_frame>   S  N  R  E  K  D  R  Y  Y  F  N  S  T  N  K  I  S  S  K  V  Q  L  *  *  I  *  Q  T  N  T  T  I  K  P  K  *  T  M  K  Q  E  L  K  Q  I  L  L  I  P  T  N  M  L  F  *  D  S  A  *  A  I  T  L  N  M  L  L  L  F  K  Q  *  T  I  R  C  L  A  H  F  S  T  S  L  S  H  P  R  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0165P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="43008" PGL_stop="39705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43008" e_stop="42534"/>
            <exon e_start="40273" e_stop="39705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.804" e_score="0.996"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="43008" e_stop="42534" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="42533" i_stop="40274" i_length="2260"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="40273" e_stop="39705" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43008" stop="42534"/>
              <exon start="40273" stop="39705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTAATCCCACTAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAGGTGTCACAATTTATAAAATAAAAGAACCAATATTTATTTGGTTCAATTATTTTTATATGACTAATGGTAGGTTTAGAAGGGCAGAATCAGGGAGACCTTATATTAAATGTAATGATTGTGGTGCTAGGTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAG : CATACTAAATTCAAATGTGGTGGAATTTCATTGGGCCTAAGTTGGGCCCATGTACTTGGAGATATATTCTCAGCAACTGAATTTTGGAACTTTTTGGGTAAAGTAGTTGGTGGATACCAACCGCCCCGACCCATTAACTTGGCCCATTCATTAACCAAAGCAAACTCAACAGAAACCCTACAAAAAATTGTGGAGGATCCACTTTCCATAAAACGGGTTGACCCGGTTGAAGATCATTGGGTTGCTAATGCAAGTTACAAGTTGGAGTCGTTTTCGATCCATGTTAGTGCATCCAAATTGGGCCAATTACAATCAAGAATAGGGATTCAAGGCCCATTTGAATCACTATGTTCTATTATTTGGCAGTCCATTTCAAGAATTAGAGATGGGCCAGGCCCAAAAGTTGTGACCATTTGTAAAAAGGGTGAAGAAAAGAAAGAGGGCGGCCTTATAGGAAACACACAATTAATTGGTGTGGTTAAGGTTGATGACTCAATTAGAGATGCTAATCCTAGTGAATTAGCAAGGTTGATTAAAAATGAGATCATCGACGAGCGATTAAAGATCGA</gDNA_template>
            <first_frame> S  S  N  P  T  K  K  K  I  I  I  I  P  K  N  G  V  F  K  I  R  R  W  S  N  L  Q  H  K  I  I  L  S  W  T  S  K  S  N  R  T  R  C  C  L  *  A  K  *  H  G  F  G  H  E  I  T  L  F  E  R  D  L  L  L  *  *  P  S  I  S  R  C  H  N  L  *  N  K  R  T  N  I  Y  L  V  Q  L  F  L  Y  D  *  W  *  V  *  K  G  R  I  R  E  T  L  Y  *  M  *  *  L  W  C  *  V  Y  *  S  T  M  *  *  N  F  G  *  M  A  R  N  E  R  Y  F  T  *  E  I  T  C  F  *  S  S  S  W  S  *  I  G  F  L  T  S  S  P  H  T   : A  Y  *  I  Q  M  W  W  N  F  I  G  P  K  L  G  P  C  T  W  R  Y  I  L  S  N  *  I  L  E  L  F  G  *  S  S  W  W  I  P  T  A  P  T  H  *  L  G  P  F  I  N  Q  S  K  L  N  R  N  P  T  K  N  C  G  G  S  T  F  H  K  T  G  *  P  G  *  R  S  L  G  C  *  C  K  L  Q  V  G  V  V  F  D  P  C  *  C  I  Q  I  G  P  I  T  I  K  N  R  D  S  R  P  I  *  I  T  M  F  Y  Y  L  A  V  H  F  K  N  *  R  W  A  R  P  K  S  C  D  H  L  *  K  G  *  R  K  E  R  G  R  P  Y  R  K  H  T  I  N  W  C  G  *  G  *  *  L  N  *  R  C  *  S  *  *  I  S  K  V  D  *  K  *  D  H  R  R  A  I  K  D  R </first_frame>
            <second_frame>  P  L  I  P  L  R  K  K  *  *  *  F  Q  K  M  V  S  S  K  L  E  D  G  L  I  Y  N  I  K  L  S  S  V  G  P  A  R  V  T  G  Q  D  V  V  Y  E  P  S  N  M  D  L  A  M  K  L  H  Y  L  R  G  I  Y  Y  F  D  S  Q  A  F  Q  G  V  T  I  Y  K  I  K  E  P  I  F  I  W  F  N  Y  F  Y  M  T  N  G  R  F  R  R  A  E  S  G  R  P  Y  I  K  C  N  D  C  G  A  R  F  I  E  A  Q  C  D  K  T  L  D  E  W  L  E  M  K  D  T  S  L  E  K  L  L  V  S  N  Q  V  L  G  P  E  L  A  F  S  P  P  V  L  I  Q  :  H  T  K  F  K  C  G  G  I  S  L  G  L  S  W  A  H  V  L  G  D  I  F  S  A  T  E  F  W  N  F  L  G  K  V  V  G  G  Y  Q  P  P  R  P  I  N  L  A  H  S  L  T  K  A  N  S  T  E  T  L  Q  K  I  V  E  D  P  L  S  I  K  R  V  D  P  V  E  D  H  W  V  A  N  A  S  Y  K  L  E  S  F  S  I  H  V  S  A  S  K  L  G  Q  L  Q  S  R  I  G  I  Q  G  P  F  E  S  L  C  S  I  I  W  Q  S  I  S  R  I  R  D  G  P  G  P  K  V  V  T  I  C  K  K  G  E  E  K  K  E  G  G  L  I  G  N  T  Q  L  I  G  V  V  K  V  D  D  S  I  R  D  A  N  P  S  E  L  A  R  L  I  K  N  E  I  I  D  E  R  L  K  I   </second_frame>
            <third_frame>   L  *  S  H  *  E  K  N  N  N  N  S  K  K  W  C  L  Q  N  *  K  M  V  *  F  T  T  *  N  Y  P  Q  L  D  Q  Q  E  *  Q  D  K  M  L  F  M  S  Q  V  T  W  I  W  P  *  N  Y  I  I  *  E  G  F  I  T  L  I  A  K  H  F  K  V  S  Q  F  I  K  *  K  N  Q  Y  L  F  G  S  I  I  F  I  *  L  M  V  G  L  E  G  Q  N  Q  G  D  L  I  L  N  V  M  I  V  V  L  G  L  L  K  H  N  V  I  K  L  W  M  N  G  *  K  *  K  I  L  H  L  R  N  Y  L  F  L  I  K  F  L  V  L  N  W  L  S  H  L  Q  S  S  Y  S :   I  L  N  S  N  V  V  E  F  H  W  A  *  V  G  P  M  Y  L  E  I  Y  S  Q  Q  L  N  F  G  T  F  W  V  K  *  L  V  D  T  N  R  P  D  P  L  T  W  P  I  H  *  P  K  Q  T  Q  Q  K  P  Y  K  K  L  W  R  I  H  F  P  *  N  G  L  T  R  L  K  I  I  G  L  L  M  Q  V  T  S  W  S  R  F  R  S  M  L  V  H  P  N  W  A  N  Y  N  Q  E  *  G  F  K  A  H  L  N  H  Y  V  L  L  F  G  S  P  F  Q  E  L  E  M  G  Q  A  Q  K  L  *  P  F  V  K  R  V  K  K  R  K  R  A  A  L  *  E  T  H  N  *  L  V  W  L  R  L  M  T  Q  L  E  M  L  I  L  V  N  *  Q  G  *  L  K  M  R  S  S  T  S  D  *  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42974" stop="42534"/>
                    <exon start="40273" stop="39707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKMVSSKLEDGLIYNIKLSSVGPARVTGQDVVYEPSNMDLAMKLHYLRGIYYFDSQAFQGVTIYKIKEPIFIWFNYFYMTNGRFRRAESGRPYIKCNDCGARFIEAQCDKTLDEWLEMKDTSLEKLLVSNQVLGPELAFSPPVLIQHTKFKCGGISLGLSWAHVLGDIFSATEFWNFLGKVVGGYQPPRPINLAHSLTKANSTETLQKIVEDPLSIKRVDPVEDHWVANASYKLESFSIHVSASKLGQLQSRIGIQGPFESLCSIIWQSISRIRDGPGPKVVTICKKGEEKKEGGLIGNTQLIGVVKVDDSIRDANPSELARLIKNEIIDERLKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43004" e_stop="42794"/>
            <exon e_start="42666" e_stop="42395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.427" acc_prob="0.186" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43004" e_stop="42794" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.427" acc_prob="0.186">
            <gDNA_intron_boundary i_start="42793" i_stop="42667" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42666" e_stop="42395" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43004" stop="42794"/>
              <exon start="42666" stop="42395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATCCCACTAAGAAAAAAATAATAATAATTCCAAAAAATGGTGTCTTCAAAATTAGAAGATGGTCTAATTTACAACATAAAATTATCCTCAGTTGGACCAGCAAGAGTAACAGGACAAGATGTTGTTTATGAGCCAAGTAACATGGATTTGGCCATGAAATTACATTATTTGAGAGGGATTTATTACTTTGATAGCCAAGCATTTCAAG : GTTTATTGAAGCACAATGTGATAAAACTTTGGATGAATGGCTAGAAATGAAAGATACTTCACTTGAGAAATTACTTGTTTCTAATCAAGTTCTTGGTCCTGAATTGGCTTTCTCACCTCCAGTCCTCATACAGGTATGTATACTCTTCTGGCTCGATTAATTTAAATTTATATCGAATAAGCTCATTAAAAAGATATACTGATATAGTGCTTCCTATCAAGAAGTTATTCATTTTCATGTCTCGGGTTTTATGTTTCATTTTTTTTCTCTTG</gDNA_template>
            <first_frame> L  I  P  L  R  K  K  *  *  *  F  Q  K  M  V  S  S  K  L  E  D  G  L  I  Y  N  I  K  L  S  S  V  G  P  A  R  V  T  G  Q  D  V  V  Y  E  P  S  N  M  D  L  A  M  K  L  H  Y  L  R  G  I  Y  Y  F  D  S  Q  A  F  Q   : G  L  L  K  H  N  V  I  K  L  W  M  N  G  *  K  *  K  I  L  H  L  R  N  Y  L  F  L  I  K  F  L  V  L  N  W  L  S  H  L  Q  S  S  Y  R  Y  V  Y  S  S  G  S  I  N  L  N  L  Y  R  I  S  S  L  K  R  Y  T  D  I  V  L  P  I  K  K  L  F  I  F  M  S  R  V  L  C  F  I  F  F  L  L </first_frame>
            <second_frame>  *  S  H  *  E  K  N  N  N  N  S  K  K  W  C  L  Q  N  *  K  M  V  *  F  T  T  *  N  Y  P  Q  L  D  Q  Q  E  *  Q  D  K  M  L  F  M  S  Q  V  T  W  I  W  P  *  N  Y  I  I  *  E  G  F  I  T  L  I  A  K  H  F  K  :  V  Y  *  S  T  M  *  *  N  F  G  *  M  A  R  N  E  R  Y  F  T  *  E  I  T  C  F  *  S  S  S  W  S  *  I  G  F  L  T  S  S  P  H  T  G  M  Y  T  L  L  A  R  L  I  *  I  Y  I  E  *  A  H  *  K  D  I  L  I  *  C  F  L  S  R  S  Y  S  F  S  C  L  G  F  Y  V  S  F  F  F  S   </second_frame>
            <third_frame>   N  P  T  K  K  K  I  I  I  I  P  K  N  G  V  F  K  I  R  R  W  S  N  L  Q  H  K  I  I  L  S  W  T  S  K  S  N  R  T  R  C  C  L  *  A  K  *  H  G  F  G  H  E  I  T  L  F  E  R  D  L  L  L  *  *  P  S  I  S  R :   F  I  E  A  Q  C  D  K  T  L  D  E  W  L  E  M  K  D  T  S  L  E  K  L  L  V  S  N  Q  V  L  G  P  E  L  A  F  S  P  P  V  L  I  Q  V  C  I  L  F  W  L  D  *  F  K  F  I  S  N  K  L  I  K  K  I  Y  *  Y  S  A  S  Y  Q  E  V  I  H  F  H  V  S  G  F  M  F  H  F  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42974" stop="42794"/>
                    <exon start="42666" stop="42623"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQKMVSSKLEDGLIYNIKLSSVGPARVTGQDVVYEPSNMDLAMKLHYLRGIYYFDSQAFQGLLKHNVIKLWMNG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42616" stop="42395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILHLRNYLFLIKFLVLNWLSHLQSSYRYVYSSGSINLNLYRISSLKRYTDIVLPIKKLFIFMSRVLCFIFFLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55126" PGL_stop="55851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55126" e_stop="55851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="55126" e_stop="55851" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55126" stop="55610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55551" stop="55851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACACACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATACGTTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCAATACTCATCCCATGTTAACCCATGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGATACAATCAGGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGTAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATACCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTATATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  H  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  Y  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  L  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  I  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  V  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  Y  P  L  P  S  T  C  L  Q  T  P  E  V  S  I  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  T  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  T  F  W  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  N  T  H  P  M  L  T  H  G  K  A  G  I  F  K  P  K  T  F  *  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  F  E  T  F  S  P  V  I  R  *  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  T  H  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  I  L  I  P  C  *  P  M  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  D  T  I  R  S  M  G  L  I  T  S  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  T  S  L  N  M  F  A  N  S  R  S  L  Y  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55322" stop="55624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYFETFSPVIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55434" stop="55736"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPMGGTQWAVNGCTKLNTMQMAVFPGTRLVWLLKDTIRSMGLITSRHSVLLFGRKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55625" stop="55849"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETIRLVLSLAVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDTHFPQHVCKLQKSLYGLKQAPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55127" stop="55321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPQYTRNHHTHSQPTRTTPYPQHLQPDTFWVLPGHPRITTARATPNTHPMLTHGKAGIFKPKTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73422" PGL_stop="77079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73422" e_stop="73745"/>
            <exon e_start="76949" e_stop="77079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="73422" e_stop="73745" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73746" i_stop="76948" i_length="3203"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="76949" e_stop="77079" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73422" stop="73745"/>
              <exon start="76949" stop="77079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTGGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTTTTTGGAAACTAGTGTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTACACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCTATACTGGACTACGGCCTCTTCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAGCTCTTCAACATTATG : GCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCTCATTTTATTTCCATTACTTTTACCATATATATTTTTGTGCTTTTCGCGTTTTTCCAA</gDNA_template>
            <first_frame> *  F  W  N  L  E  Y  G  *  *  D  C  F  *  G  G  W  Y  W  Y  N  F  F  G  N  *  C  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  T  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  G  C  G  S  W  *  Q  T  S  W  S  I  L  D  Y  G  L  F  L  C  *  Y  G  E  C  G  *  E  R  *  L  F  N  I  M  :  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  Y  F  L  I  L  F  P  L  L  L  P  Y  I  F  L  C  F  S  R  F  S   </first_frame>
            <second_frame>  D  F  G  T  L  S  M  G  N  E  T  V  S  R  V  V  G  I  G  T  I  F  L  E  T  S  V  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  E  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  S  L  V  V  A  R  G  N  K  R  R  G  L  Y  W  T  T  A  S  S  C  V  D  M  V  N  A  V  E  S  D  S  S  S  T  L  W :   L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  S  F  Y  F  H  Y  F  Y  H  I  Y  F  C  A  F  R  V  F  P  </second_frame>
            <third_frame>   I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  V  L  V  Q  F  F  W  K  L  V  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  Y  T  *  F  L  L  V  F  *  M  M  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  P  W  L  W  L  V  V  T  N  V  V  V  Y  T  G  L  R  P  L  L  V  L  I  W  *  M  R  L  R  A  I  A  L  Q  H  Y   : G  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  L  F  S  H  F  I  S  I  T  F  T  I  Y  I  F  V  L  F  A  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73423" stop="73745"/>
                    <exon start="76949" stop="77078"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFGTLSMGNETVSRVVGIGTIFLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDEGYVSTNGDGKWKLIKGSLVVARGNKRRGLYWTTASSCVDMVNAVESDSSSTLWLLLARGFFPYSEGFPRKILGVVIFSFYFHYFYHIYFCAFRVFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83106" PGL_stop="86579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83106" e_stop="83147"/>
            <exon e_start="84999" e_stop="85140"/>
            <exon e_start="85234" e_stop="85302"/>
            <exon e_start="85910" e_stop="86016"/>
            <exon e_start="86262" e_stop="86579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.833" e_score="0.981"/>
          <exon-only e_score="0.874"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83106" e_stop="83147" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.954">
            <gDNA_intron_boundary i_start="83148" i_stop="84998" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84999" e_stop="85140" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.983">
            <gDNA_intron_boundary i_start="85141" i_stop="85233" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="85234" e_stop="85302" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.477" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85303" i_stop="85909" i_length="607"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="85910" e_stop="86016" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="86017" i_stop="86261" i_length="245"/>
          </intron>
          <exon e_serial="5" e_score="0.874">
            <gDNA_exon_boundary e_start="86262" e_stop="86579" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83106" stop="83147"/>
              <exon start="84999" stop="85140"/>
              <exon start="85234" stop="85302"/>
              <exon start="85910" stop="86016"/>
              <exon start="86262" stop="86579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTCTGGCCTCTTAAACCCTGAAAATTTGTCTTCATCAG : ATATCAATGGCTTTCTACAACAAACTTGGTGGTCTTTTGAGGCAGAGCATCTCAACAAGTGGCAATACATTAAACGCACAATCATCAGCACCTTCAATGCTTAATGCCATCCGTTGCATGTCAACAAAGCTTTTTGTTGGAG : GTCTTTCATTTGGAACTGACGATCAGTCTCTGAGGGAAGCCTTCACCAGTTTTGGTGTTGTCGTCGAGG : CTAAGGTCATCATGGATAGAGATTCTGGGAAATCAAAGGGATTTGGATTCGTGAACTTCACAGAAGGTCAATCTGCCCAAGATGCTATGTCAGCAATGGATGGACAG : GATCTCAACGGGAGGAACATCCGCGTCTCTCTAGCCCAAGAGAGAGCCCCACGCAGTGGTGGCTTTCGTTCTGGTGGTGGCGGATTTGGCGGTGGCTATGGTGGATCTAGACAAAATGATGCATACTAAGTAAAACTTGTAATCTTTGCTCACTTGTCTATACAAGCATAGCAAATTTCGTAGGTAGGAGATGGAACGTAACGCGATTTTGTGTTGAACGAATTTTCCTTAGCTTTTAATGTATGCTTCTATATTAAGGTTTTATCATATGATCACTTGACTTCCCTAACTTTGGTCCAAGTGGGCAAGTCGATTTTA</gDNA_template>
            <first_frame> H  F  L  A  S  *  T  L  K  I  C  L  H  Q  :  I  S  M  A  F  Y  N  K  L  G  G  L  L  R  Q  S  I  S  T  S  G  N  T  L  N  A  Q  S  S  A  P  S  M  L  N  A  I  R  C  M  S  T  K  L  F  V  G   : G  L  S  F  G  T  D  D  Q  S  L  R  E  A  F  T  S  F  G  V  V  V  E   : A  K  V  I  M  D  R  D  S  G  K  S  K  G  F  G  F  V  N  F  T  E  G  Q  S  A  Q  D  A  M  S  A  M  D  G  Q  :  D  L  N  G  R  N  I  R  V  S  L  A  Q  E  R  A  P  R  S  G  G  F  R  S  G  G  G  G  F  G  G  G  Y  G  G  S  R  Q  N  D  A  Y  *  V  K  L  V  I  F  A  H  L  S  I  Q  A  *  Q  I  S  *  V  G  D  G  T  *  R  D  F  V  L  N  E  F  S  L  A  F  N  V  C  F  Y  I  K  V  L  S  Y  D  H  L  T  S  L  T  L  V  Q  V  G  K  S  I  L </first_frame>
            <second_frame>  I  F  W  P  L  K  P  *  K  F  V  F  I  R :   Y  Q  W  L  S  T  T  N  L  V  V  F  *  G  R  A  S  Q  Q  V  A  I  H  *  T  H  N  H  Q  H  L  Q  C  L  M  P  S  V  A  C  Q  Q  S  F  L  L  E  :  V  F  H  L  E  L  T  I  S  L  *  G  K  P  S  P  V  L  V  L  S  S  R  :  L  R  S  S  W  I  E  I  L  G  N  Q  R  D  L  D  S  *  T  S  Q  K  V  N  L  P  K  M  L  C  Q  Q  W  M  D  R :   I  S  T  G  G  T  S  A  S  L  *  P  K  R  E  P  H  A  V  V  A  F  V  L  V  V  A  D  L  A  V  A  M  V  D  L  D  K  M  M  H  T  K  *  N  L  *  S  L  L  T  C  L  Y  K  H  S  K  F  R  R  *  E  M  E  R  N  A  I  L  C  *  T  N  F  P  *  L  L  M  Y  A  S  I  L  R  F  Y  H  M  I  T  *  L  P  *  L  W  S  K  W  A  S  R  F   </second_frame>
            <third_frame>   F  S  G  L  L  N  P  E  N  L  S  S  S   : D  I  N  G  F  L  Q  Q  T  W  W  S  F  E  A  E  H  L  N  K  W  Q  Y  I  K  R  T  I  I  S  T  F  N  A  *  C  H  P  L  H  V  N  K  A  F  C  W  R :   S  F  I  W  N  *  R  S  V  S  E  G  S  L  H  Q  F  W  C  C  R  R  G :   *  G  H  H  G  *  R  F  W  E  I  K  G  I  W  I  R  E  L  H  R  R  S  I  C  P  R  C  Y  V  S  N  G  W  T   : G  S  Q  R  E  E  H  P  R  L  S  S  P  R  E  S  P  T  Q  W  W  L  S  F  W  W  W  R  I  W  R  W  L  W  W  I  *  T  K  *  C  I  L  S  K  T  C  N  L  C  S  L  V  Y  T  S  I  A  N  F  V  G  R  R  W  N  V  T  R  F  C  V  E  R  I  F  L  S  F  *  C  M  L  L  Y  *  G  F  I  I  *  S  L  D  F  P  N  F  G  P  S  G  Q  V  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83124" stop="83147"/>
                    <exon start="84999" stop="85140"/>
                    <exon start="85234" stop="85302"/>
                    <exon start="85910" stop="86016"/>
                    <exon start="86262" stop="86390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLKICLHQISMAFYNKLGGLLRQSISTSGNTLNAQSSAPSMLNAIRCMSTKLFVGGLSFGTDDQSLREAFTSFGVVVEAKVIMDRDSGKSKGFGFVNFTEGQSAQDAMSAMDGQDLNGRNIRVSLAQERAPRSGGFRSGGGGFGGGYGGSRQNDAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="94304" PGL_stop="92537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94304" e_stop="92537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="94304" e_stop="92537" e_length="1768"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94304" stop="92537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCCATTTTCCAATAACACCATTAGCCTTTCTTTCGTATACTCTCTGCAATATCAAAGCGATAAATAAATCAAATTGATATATCATATACATATATAAAGTTATGAAAACTATAATGGCATCGCCACCTGACACAAGCAAAACCACAAAACTAGAGCGCTACAATAGCTATATTCGAAGAGTTAATAGTACAAAACTCATCGCTGCATCGTCTAAGCTTTTATTTCGTGTCACTTTATTAGTGGCTCTTTTACTTATTTTCTTCTTCACTATAAATTACCCTCCGTTAACTTCCGAAAAATCATTCAACAATAATATTCACACCACTACCCATAACCTTCTATCCTCCGCGATTTACGGCGGTGGGGCGTCGTGGGAGAAACAAGTTCGTCACTCCTCGACACCCCACCGCCCTAACGGGCTATCCGTCCTCGTGACGGGAGCAGCTGGGTTCGTTGGTTCTCATTGCTCTTTAGCATTGAAGAAGCGTGGTGATGGTGTTTTAGGTTTAGATAATTTCAATTCATACTACGATCCTTCGTTGAAACGTGCTCGTCAAGATCAGTTATCGAAGCATCAGATTTTCATTGTAGAAGGTGATATTAACGATACAGAGCTTCTGAAAAAGCTTTTCGACATTGTTCCTTTTACTCATATCCTTCATCTAGCTGCACAAGCAGGTGTTCGTTACGCGATGCAGAATCCTCTCTCTTATGTAAACTCAAACGTTGCTGGGTTTGTAAATCTGTTAGAAATAGCTAAAGCTGCAGATCCACAACCAGCGATAGTCTGGGCTTCATCGAGCTCTGTTTATGGATTGAACACCAAAGTTCCATTCTCCGAAGATCACAGAACAGATCAACCAGCTAGTTTATACGCTGCAACGAAGAAAGCAGGGGAAGCAATTGCACATACATATAACCATATCTACGGGCTTTCATTAACAGGTTTGAGGTTTTTCACTGTTTACGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACAAAGGATATGATTCAGGGGAAATCGATTAACGTGTACGTCACTCAGGATGATAAAGAGGTGGCGCGTGACTTCACGTACATTGATGATATAGTAAAAGGATGCGTCGGCGCGTTGGATACGGCGGAGAAGAGCACCGGGAGCGGCGGAAAGAAGAGAGGTCCGGCGCAATTGAGGGTTTACAATTTGGGGAATACTTCACCAGTGTCGGTGAAGAAGTTGGTGGCAATTCTCGAAAATTTATTAAATCTTAAGGCTAAAAAATTTTTTATTAAAATGCCACGAAACGGCGACGTTCCGTTTACACATGCTAACGTGAGCCTGGCGTTGAGGGATTTTGGATATAAGCCAACAACTGATTTGTCAAGTGGGTTAAGGAAATTTGTGAAGTGGTATGTTAGTTATTATGGAATTCAATCAAGGGTAAAAAAGGAAAGTGAAGGGGAAAAGTGAAAAAGTCTATTTTACCTTTTATTTTCATTTTTTTTGTTTTTTATGATGTAATATTTGGATCAAAATTATGTTTACTTGTTTATTTTTAGTATAGGAATAGAATTTTATATTTATAAAAAAAATAAGAAAATTAGAGGAGGGTGGAAATGGCAAGTGTAGATCTATGAAAAGTGGGGTTTATAATAATGTACTTTTAAGGTATTATTGGATGTAGGATTTAAGGAAAAAAAAAATCAAATCATAAATTGTAATATTTTGGAACAACAATGATGATTCCATCAAGATTAATCTTATGTCTTTTATCTT</gDNA_template>
            <first_frame> S  P  F  S  N  N  T  I  S  L  S  F  V  Y  S  L  Q  Y  Q  S  D  K  *  I  K  L  I  Y  H  I  H  I  *  S  Y  E  N  Y  N  G  I  A  T  *  H  K  Q  N  H  K  T  R  A  L  Q  *  L  Y  S  K  S  *  *  Y  K  T  H  R  C  I  V  *  A  F  I  S  C  H  F  I  S  G  S  F  T  Y  F  L  L  H  Y  K  L  P  S  V  N  F  R  K  I  I  Q  Q  *  Y  S  H  H  Y  P  *  P  S  I  L  R  D  L  R  R  W  G  V  V  G  E  T  S  S  S  L  L  D  T  P  P  P  *  R  A  I  R  P  R  D  G  S  S  W  V  R  W  F  S  L  L  F  S  I  E  E  A  W  *  W  C  F  R  F  R  *  F  Q  F  I  L  R  S  F  V  E  T  C  S  S  R  S  V  I  E  A  S  D  F  H  C  R  R  *  Y  *  R  Y  R  A  S  E  K  A  F  R  H  C  S  F  Y  S  Y  P  S  S  S  C  T  S  R  C  S  L  R  D  A  E  S  S  L  L  C  K  L  K  R  C  W  V  C  K  S  V  R  N  S  *  S  C  R  S  T  T  S  D  S  L  G  F  I  E  L  C  L  W  I  E  H  Q  S  S  I  L  R  R  S  Q  N  R  S  T  S  *  F  I  R  C  N  E  E  S  R  G  S  N  C  T  Y  I  *  P  Y  L  R  A  F  I  N  R  F  E  V  F  H  C  L  R  T  L  G  K  T  R  H  G  V  F  L  L  H  K  G  Y  D  S  G  E  I  D  *  R  V  R  H  S  G  *  *  R  G  G  A  *  L  H  V  H  *  *  Y  S  K  R  M  R  R  R  V  G  Y  G  G  E  E  H  R  E  R  R  K  E  E  R  S  G  A  I  E  G  L  Q  F  G  E  Y  F  T  S  V  G  E  E  V  G  G  N  S  R  K  F  I  K  S  *  G  *  K  I  F  Y  *  N  A  T  K  R  R  R  S  V  Y  T  C  *  R  E  P  G  V  E  G  F  W  I  *  A  N  N  *  F  V  K  W  V  K  E  I  C  E  V  V  C  *  L  L  W  N  S  I  K  G  K  K  G  K  *  R  G  K  V  K  K  S  I  L  P  F  I  F  I  F  F  V  F  Y  D  V  I  F  G  S  K  L  C  L  L  V  Y  F  *  Y  R  N  R  I  L  Y  L  *  K  K  *  E  N  *  R  R  V  E  M  A  S  V  D  L  *  K  V  G  F  I  I  M  Y  F  *  G  I  I  G  C  R  I  *  G  K  K  K  S  N  H  K  L  *  Y  F  G  T  T  M  M  I  P  S  R  L  I  L  C  L  L  S  </first_frame>
            <second_frame>  P  H  F  P  I  T  P  L  A  F  L  S  Y  T  L  C  N  I  K  A  I  N  K  S  N  *  Y  I  I  Y  I  Y  K  V  M  K  T  I  M  A  S  P  P  D  T  S  K  T  T  K  L  E  R  Y  N  S  Y  I  R  R  V  N  S  T  K  L  I  A  A  S  S  K  L  L  F  R  V  T  L  L  V  A  L  L  L  I  F  F  F  T  I  N  Y  P  P  L  T  S  E  K  S  F  N  N  N  I  H  T  T  T  H  N  L  L  S  S  A  I  Y  G  G  G  A  S  W  E  K  Q  V  R  H  S  S  T  P  H  R  P  N  G  L  S  V  L  V  T  G  A  A  G  F  V  G  S  H  C  S  L  A  L  K  K  R  G  D  G  V  L  G  L  D  N  F  N  S  Y  Y  D  P  S  L  K  R  A  R  Q  D  Q  L  S  K  H  Q  I  F  I  V  E  G  D  I  N  D  T  E  L  L  K  K  L  F  D  I  V  P  F  T  H  I  L  H  L  A  A  Q  A  G  V  R  Y  A  M  Q  N  P  L  S  Y  V  N  S  N  V  A  G  F  V  N  L  L  E  I  A  K  A  A  D  P  Q  P  A  I  V  W  A  S  S  S  S  V  Y  G  L  N  T  K  V  P  F  S  E  D  H  R  T  D  Q  P  A  S  L  Y  A  A  T  K  K  A  G  E  A  I  A  H  T  Y  N  H  I  Y  G  L  S  L  T  G  L  R  F  F  T  V  Y  G  P  W  G  R  P  D  M  A  Y  F  F  F  T  K  D  M  I  Q  G  K  S  I  N  V  Y  V  T  Q  D  D  K  E  V  A  R  D  F  T  Y  I  D  D  I  V  K  G  C  V  G  A  L  D  T  A  E  K  S  T  G  S  G  G  K  K  R  G  P  A  Q  L  R  V  Y  N  L  G  N  T  S  P  V  S  V  K  K  L  V  A  I  L  E  N  L  L  N  L  K  A  K  K  F  F  I  K  M  P  R  N  G  D  V  P  F  T  H  A  N  V  S  L  A  L  R  D  F  G  Y  K  P  T  T  D  L  S  S  G  L  R  K  F  V  K  W  Y  V  S  Y  Y  G  I  Q  S  R  V  K  K  E  S  E  G  E  K  *  K  S  L  F  Y  L  L  F  S  F  F  L  F  F  M  M  *  Y  L  D  Q  N  Y  V  Y  L  F  I  F  S  I  G  I  E  F  Y  I  Y  K  K  N  K  K  I  R  G  G  W  K  W  Q  V  *  I  Y  E  K  W  G  L  *  *  C  T  F  K  V  L  L  D  V  G  F  K  E  K  K  N  Q  I  I  N  C  N  I  L  E  Q  Q  *  *  F  H  Q  D  *  S  Y  V  F  Y  L </second_frame>
            <third_frame>   P  I  F  Q  *  H  H  *  P  F  F  R  I  L  S  A  I  S  K  R  *  I  N  Q  I  D  I  S  Y  T  Y  I  K  L  *  K  L  *  W  H  R  H  L  T  Q  A  K  P  Q  N  *  S  A  T  I  A  I  F  E  E  L  I  V  Q  N  S  S  L  H  R  L  S  F  Y  F  V  S  L  Y  *  W  L  F  Y  L  F  S  S  S  L  *  I  T  L  R  *  L  P  K  N  H  S  T  I  I  F  T  P  L  P  I  T  F  Y  P  P  R  F  T  A  V  G  R  R  G  R  N  K  F  V  T  P  R  H  P  T  A  L  T  G  Y  P  S  S  *  R  E  Q  L  G  S  L  V  L  I  A  L  *  H  *  R  S  V  V  M  V  F  *  V  *  I  I  S  I  H  T  T  I  L  R  *  N  V  L  V  K  I  S  Y  R  S  I  R  F  S  L  *  K  V  I  L  T  I  Q  S  F  *  K  S  F  S  T  L  F  L  L  L  I  S  F  I  *  L  H  K  Q  V  F  V  T  R  C  R  I  L  S  L  M  *  T  Q  T  L  L  G  L  *  I  C  *  K  *  L  K  L  Q  I  H  N  Q  R  *  S  G  L  H  R  A  L  F  M  D  *  T  P  K  F  H  S  P  K  I  T  E  Q  I  N  Q  L  V  Y  T  L  Q  R  R  K  Q  G  K  Q  L  H  I  H  I  T  I  S  T  G  F  H  *  Q  V  *  G  F  S  L  F  T  D  L  G  E  D  Q  T  W  R  I  S  S  S  Q  R  I  *  F  R  G  N  R  L  T  C  T  S  L  R  M  I  K  R  W  R  V  T  S  R  T  L  M  I  *  *  K  D  A  S  A  R  W  I  R  R  R  R  A  P  G  A  A  E  R  R  E  V  R  R  N  *  G  F  T  I  W  G  I  L  H  Q  C  R  *  R  S  W  W  Q  F  S  K  I  Y  *  I  L  R  L  K  N  F  L  L  K  C  H  E  T  A  T  F  R  L  H  M  L  T  *  A  W  R  *  G  I  L  D  I  S  Q  Q  L  I  C  Q  V  G  *  G  N  L  *  S  G  M  L  V  I  M  E  F  N  Q  G  *  K  R  K  V  K  G  K  S  E  K  V  Y  F  T  F  Y  F  H  F  F  C  F  L  *  C  N  I  W  I  K  I  M  F  T  C  L  F  L  V  *  E  *  N  F  I  F  I  K  K  I  R  K  L  E  E  G  G  N  G  K  C  R  S  M  K  S  G  V  Y  N  N  V  L  L  R  Y  Y  W  M  *  D  L  R  K  K  K  I  K  S  *  I  V  I  F  W  N  N  N  D  D  S  I  K  I  N  L  M  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94225" stop="92843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIIYIYKVMKTIMASPPDTSKTTKLERYNSYIRRVNSTKLIAASSKLLFRVTLLVALLLIFFFTINYPPLTSEKSFNNNIHTTTHNLLSSAIYGGGASWEKQVRHSSTPHRPNGLSVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQDQLSKHQIFIVEGDINDTELLKKLFDIVPFTHILHLAAQAGVRYAMQNPLSYVNSNVAGFVNLLEIAKAADPQPAIVWASSSSVYGLNTKVPFSEDHRTDQPASLYAATKKAGEAIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDMIQGKSINVYVTQDDKEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGPAQLRVYNLGNTSPVSVKKLVAILENLLNLKAKKFFIKMPRNGDVPFTHANVSLALRDFGYKPTTDLSSGLRKFVKWYVSYYGIQSRVKKESEGEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="93649" PGL_stop="94300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93649" e_stop="93898"/>
            <exon e_start="93960" e_stop="94300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="93649" e_stop="93898" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93899" i_stop="93959" i_length="61"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93960" e_stop="94300" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93649" stop="93898"/>
              <exon start="93960" stop="94300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336390" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGAGTAAAAGGAACAATGTCGAAAAGCTTTTTCAGAAGCTCTGTATCGTTAATATCACCTTCTACAATGAAAATCTGATGCTTCGATAACTGATCTTGACGAGCACGTTTCAACGAAGGATCGTAGTATGAATTGAAATTATCTAAACCTAAAACACCATCACCACGCTTCTTCAATGCTAAAGAGCAATGAGAACCAACGAACCCAGCTGCTCCCGTCACGAGGACGGATAGCCCGTTAGGGCGGTG : GATAGAAGGTTATGGGTAGTGGTGTGAATATTATTGTTGAATGATTTTTCGGAAGTTAACGGAGGGTAATTTATAGTGAAGAAGAAAATAAGTAAAAGAGCCACTAATAAAGTGACACGAAATAAAAGCTTAGACGATGCAGCGATGAGTTTTGTACTATTAACTCTTCGAATATAGCTATTGTAGCGCTCTAGTTTTGTGGTTTTGCTTGTGTCAGGTGGCGATGCCATTATAGTTTTCATAACTTTATATATGTATATGATATATCAATTTGATTTATTTATCGCTTTGATATTGCAGAGAGTATACGAAAGAAAGGCTAATGGTGTTATTGGAAAATG</gDNA_template>
            <first_frame> Y  E  *  K  E  Q  C  R  K  A  F  S  E  A  L  Y  R  *  Y  H  L  L  Q  *  K  S  D  A  S  I  T  D  L  D  E  H  V  S  T  K  D  R  S  M  N  *  N  Y  L  N  L  K  H  H  H  H  A  S  S  M  L  K  S  N  E  N  Q  R  T  Q  L  L  P  S  R  G  R  I  A  R  *  G  G   : G  *  K  V  M  G  S  G  V  N  I  I  V  E  *  F  F  G  S  *  R  R  V  I  Y  S  E  E  E  N  K  *  K  S  H  *  *  S  D  T  K  *  K  L  R  R  C  S  D  E  F  C  T  I  N  S  S  N  I  A  I  V  A  L  *  F  C  G  F  A  C  V  R  W  R  C  H  Y  S  F  H  N  F  I  Y  V  Y  D  I  S  I  *  F  I  Y  R  F  D  I  A  E  S  I  R  K  K  G  *  W  C  Y  W  K  M </first_frame>
            <second_frame>  M  S  K  R  N  N  V  E  K  L  F  Q  K  L  C  I  V  N  I  T  F  Y  N  E  N  L  M  L  R  *  L  I  L  T  S  T  F  Q  R  R  I  V  V  *  I  E  I  I  *  T  *  N  T  I  T  T  L  L  Q  C  *  R  A  M  R  T  N  E  P  S  C  S  R  H  E  D  G  *  P  V  R  A  V  :  D  R  R  L  W  V  V  V  *  I  L  L  L  N  D  F  S  E  V  N  G  G  *  F  I  V  K  K  K  I  S  K  R  A  T  N  K  V  T  R  N  K  S  L  D  D  A  A  M  S  F  V  L  L  T  L  R  I  *  L  L  *  R  S  S  F  V  V  L  L  V  S  G  G  D  A  I  I  V  F  I  T  L  Y  M  Y  M  I  Y  Q  F  D  L  F  I  A  L  I  L  Q  R  V  Y  E  R  K  A  N  G  V  I  G  K   </second_frame>
            <third_frame>   *  V  K  G  T  M  S  K  S  F  F  R  S  S  V  S  L  I  S  P  S  T  M  K  I  *  C  F  D  N  *  S  *  R  A  R  F  N  E  G  S  *  Y  E  L  K  L  S  K  P  K  T  P  S  P  R  F  F  N  A  K  E  Q  *  E  P  T  N  P  A  A  P  V  T  R  T  D  S  P  L  G  R  W :   I  E  G  Y  G  *  W  C  E  Y  Y  C  *  M  I  F  R  K  L  T  E  G  N  L  *  *  R  R  K  *  V  K  E  P  L  I  K  *  H  E  I  K  A  *  T  M  Q  R  *  V  L  Y  Y  *  L  F  E  Y  S  Y  C  S  A  L  V  L  W  F  C  L  C  Q  V  A  M  P  L  *  F  S  *  L  Y  I  C  I  *  Y  I  N  L  I  Y  L  S  L  *  Y  C  R  E  Y  T  K  E  R  L  M  V  L  L  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0165P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="110572" PGL_stop="106961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110572" e_stop="110276"/>
            <exon e_start="109572" e_stop="109390"/>
            <exon e_start="108532" e_stop="108402"/>
            <exon e_start="108306" e_stop="108148"/>
            <exon e_start="107164" e_stop="107054"/>
            <exon e_start="106966" e_stop="106961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.428" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110572" e_stop="110276" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="110275" i_stop="109573" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109572" e_stop="109390" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="109389" i_stop="108533" i_length="857"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108532" e_stop="108402" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="108401" i_stop="108307" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108306" e_stop="108148" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.428" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108147" i_stop="107165" i_length="983"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107164" e_stop="107054" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.934" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107053" i_stop="106967" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106966" e_stop="106961" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110572" stop="110276"/>
              <exon start="109572" stop="109390"/>
              <exon start="108532" stop="108402"/>
              <exon start="108306" stop="108148"/>
              <exon start="107164" stop="107054"/>
              <exon start="106966" stop="106961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTACTCATTTAGCGAAAATGGGAACTCCGATCTCCGGCGAATTAGACGATTGGGATCGACCTTTTACAGAGGAAGAACTCCAAGAGATAGATGCTGCATTTGAATCAGCTACCAAGAGAAAAAGCGATTCTGTAGTCGCCGCCGGCGAAGAATCCCGTCGGAAAAGTCGCCGGAAATTGCCGGCATCTCTTTTTGTATATCATCAACAAAATGAGGTTTCCGATTCGTCATTGTTGTCTCCTTGCACTAGAAATCAGTCTCGGTGTAGCTATTCCTCTCGTTCTTCTAATCAAG : CAGCTAAGATAGTGATGCAATACCCGGAAATGTCCTTTAAAGGACGTGTTATATACAGCAGAACTATTAACGAGGTGGAGAAATCTGCAGTAGAGCTGTTAAATTTTGTTGAGGAAAAGAAGAGGAAAGAAGGGAATGTTGCTCTTGGATTTGACATTGAATGGAAGCCCACTTTTAGAAGAG : GTGTGCCACCTGGGAAGGCTGCTGTTATGCAGATATGTGGTGACAAGGGTAATTGTTATGTTTTGCATATCATCCACTCCGGAATCCCTCAAACTCTGCAATCTCTTCTTGAGGATCCAACTGTTGTGAAG : GTGGGTGTTTGCATTGCAAATGATGCTTTCAAAGTTCGCCAAGATCACAATGTATCTGTGAAGGCTTTGGAAGATCTTTCCGAACTTGCCAACAAAAAGCTTGATGATCCCAAGAAGTGGAGTCTAGCATCATTAACTGAGAAGCTTCTTGCCAAGCAG : CTCCCAAAGCCAAGTAATATCAGGTTGGGGAATTGGGAGGCTAATGTGTTATCTAGGGACCAACTACATTATGCTGCTACAGATGCCTTTGTTTCCTGGTACTTATATCAG : GCACTG</gDNA_template>
            <first_frame> F  V  L  I  *  R  K  W  E  L  R  S  P  A  N  *  T  I  G  I  D  L  L  Q  R  K  N  S  K  R  *  M  L  H  L  N  Q  L  P  R  E  K  A  I  L  *  S  P  P  A  K  N  P  V  G  K  V  A  G  N  C  R  H  L  F  L  Y  I  I  N  K  M  R  F  P  I  R  H  C  C  L  L  A  L  E  I  S  L  G  V  A  I  P  L  V  L  L  I  K  :  Q  L  R  *  *  C  N  T  R  K  C  P  L  K  D  V  L  Y  T  A  E  L  L  T  R  W  R  N  L  Q  *  S  C  *  I  L  L  R  K  R  R  G  K  K  G  M  L  L  L  D  L  T  L  N  G  S  P  L  L  E  E  :  V  C  H  L  G  R  L  L  L  C  R  Y  V  V  T  R  V  I  V  M  F  C  I  S  S  T  P  E  S  L  K  L  C  N  L  F  L  R  I  Q  L  L  *  R :   W  V  F  A  L  Q  M  M  L  S  K  F  A  K  I  T  M  Y  L  *  R  L  W  K  I  F  P  N  L  P  T  K  S  L  M  I  P  R  S  G  V  *  H  H  *  L  R  S  F  L  P  S  S :   S  Q  S  Q  V  I  S  G  W  G  I  G  R  L  M  C  Y  L  G  T  N  Y  I  M  L  L  Q  M  P  L  F  P  G  T  Y  I  R :   H   </first_frame>
            <second_frame>  L  Y  S  F  S  E  N  G  N  S  D  L  R  R  I  R  R  L  G  S  T  F  Y  R  G  R  T  P  R  D  R  C  C  I  *  I  S  Y  Q  E  K  K  R  F  C  S  R  R  R  R  R  I  P  S  E  K  S  P  E  I  A  G  I  S  F  C  I  S  S  T  K  *  G  F  R  F  V  I  V  V  S  L  H  *  K  S  V  S  V  *  L  F  L  S  F  F  *  S  S :   S  *  D  S  D  A  I  P  G  N  V  L  *  R  T  C  Y  I  Q  Q  N  Y  *  R  G  G  E  I  C  S  R  A  V  K  F  C  *  G  K  E  E  E  R  R  E  C  C  S  W  I  *  H  *  M  E  A  H  F  *  K  R :   C  A  T  W  E  G  C  C  Y  A  D  M  W  *  Q  G  *  L  L  C  F  A  Y  H  P  L  R  N  P  S  N  S  A  I  S  S  *  G  S  N  C  C  E   : G  G  C  L  H  C  K  *  C  F  Q  S  S  P  R  S  Q  C  I  C  E  G  F  G  R  S  F  R  T  C  Q  Q  K  A  *  *  S  Q  E  V  E  S  S  I  I  N  *  E  A  S  C  Q  A   : A  P  K  A  K  *  Y  Q  V  G  E  L  G  G  *  C  V  I  *  G  P  T  T  L  C  C  Y  R  C  L  C  F  L  V  L  I  S   : G  T  </second_frame>
            <third_frame>   C  T  H  L  A  K  M  G  T  P  I  S  G  E  L  D  D  W  D  R  P  F  T  E  E  E  L  Q  E  I  D  A  A  F  E  S  A  T  K  R  K  S  D  S  V  V  A  A  G  E  E  S  R  R  K  S  R  R  K  L  P  A  S  L  F  V  Y  H  Q  Q  N  E  V  S  D  S  S  L  L  S  P  C  T  R  N  Q  S  R  C  S  Y  S  S  R  S  S  N  Q   : A  A  K  I  V  M  Q  Y  P  E  M  S  F  K  G  R  V  I  Y  S  R  T  I  N  E  V  E  K  S  A  V  E  L  L  N  F  V  E  E  K  K  R  K  E  G  N  V  A  L  G  F  D  I  E  W  K  P  T  F  R  R   : G  V  P  P  G  K  A  A  V  M  Q  I  C  G  D  K  G  N  C  Y  V  L  H  I  I  H  S  G  I  P  Q  T  L  Q  S  L  L  E  D  P  T  V  V  K  :  V  G  V  C  I  A  N  D  A  F  K  V  R  Q  D  H  N  V  S  V  K  A  L  E  D  L  S  E  L  A  N  K  K  L  D  D  P  K  K  W  S  L  A  S  L  T  E  K  L  L  A  K  Q  :  L  P  K  P  S  N  I  R  L  G  N  W  E  A  N  V  L  S  R  D  Q  L  H  Y  A  A  T  D  A  F  V  S  W  Y  L  Y  Q  :  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0165P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110570" stop="110276"/>
                    <exon start="109572" stop="109390"/>
                    <exon start="108532" stop="108402"/>
                    <exon start="108306" stop="108148"/>
                    <exon start="107164" stop="107054"/>
                    <exon start="106966" stop="106961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTHLAKMGTPISGELDDWDRPFTEEELQEIDAAFESATKRKSDSVVAAGEESRRKSRRKLPASLFVYHQQNEVSDSSLLSPCTRNQSRCSYSSRSSNQAAKIVMQYPEMSFKGRVIYSRTINEVEKSAVELLNFVEEKKRKEGNVALGFDIEWKPTFRRGVPPGKAAVMQICGDKGNCYVLHIIHSGIPQTLQSLLEDPTVVKVGVCIANDAFKVRQDHNVSVKALEDLSELANKKLDDPKKWSLASLTEKLLAKQLPKPSNIRLGNWEANVLSRDQLHYAATDAFVSWYLYQAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 264656 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 16541 bytes was the average size of a spliced alignment
$ 20616 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1585 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 40 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:56:07
-->
