<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:07:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4031" ref_strand="+" ref_description="SGN-M4031 cLEX-3-N24 [est_clones]">
      <seq>ttttcagttacactatggctgatcgcgtacatcctcgagattcatcgccggcgagttcaccgatttcgtcaaaaaactccggcggagtagctacgggaactcagacaaagcatgtgctgccgtcgccgggaacgtatgttgttcaagtaccaaaagatcaaatctatcggtatcctccaccggggaattctcgacgttacgaagctttgagaaaacgaaagcctcgtcggagctgctgttgccggtgcgtttgctatactttatctctccttctaattctcattatcgcacttggaatcactgctgctgttgtctacctcgtcttccgtcctgaagctccaaaatacactatctccgacgtcgcgattaagaatttcaacttaacttcgtcgtctccggtatcgccggaattcgacgttactatccgagctgaaaatcctaacaataagatcggaatttactaccggaaaggaagctctgtcaccgtattctactccgatgtccgtctctctaacggcgagttgccggagttctatcagccttcgactaacataactgtttttcagacgccgctaaaaggatcaaacgtcttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="2897" stop="1702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2597" g_stop="2002" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-M4031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2597" e_stop="2002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTT</genome_strand>
        <mrna_strand>TTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3987" ref_strand="+" ref_description="SGN-M3987 cTOF-11-I4 [est_clones]">
      <seq>tttgttaaagatttcaaacaactcgcttgaaggtgtgttaccaactatgttagggacatacctcgaacttaaaacaattgatcttagcattaaccaactaagtggtactctccttcccagccttttcaactctaccaaattgactgatattaacgtttctttcaacaaatttaccggtagtgtacctatcatggcatttaactcagagaatcttagcttggtttctctagatgtttcacataatgcattagctggtccgttgcctccggggctggacaagttcccggacatggtaaatctggatctctctgataacaaatttgaaggtggccttcctaatgatctctcagagaaattggaatttttaaatgtggctaataacaatttttctggacctgttccacaaaatttatggaggtttcctgactcctcattccatccggggaatcccttgcttgtacttccaaagcatgctgaagctccttcagagggagattcaactntaagcttgagaagtcatggttctcgcatgaaatctaccatcagggctgccctcattgctgggctgatctgtggtgtatctgttatagctttgttgacattaataatctaccacaaggcccatcagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="7891" stop="6660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7591" g_stop="6960" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-M3987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7591" e_stop="6960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTTTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</genome_strand>
        <mrna_strand>TTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTNTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M869" ref_strand="+" ref_description="SGN-M869 SSR196 [est_by_read_no_qc_info]">
      <seq>ccctctctcgtgtgtagggtgccactggtcaatactttgagtctatatatagcctatattatgtatagagagagagagtagaaggaggtgagagaaatgggttggtttccatgttctggatcattgaagcagacctcaaagaagaggaagaagaagaagaagaaagattcgtctaattcggttcaactcggttgtgataagttgaaggcaaagactctgttaggttcaaaggagtatgttaaggatggcgagtctggtcaaattggagccaagatttttaaatttcgtgaattagcagttgcaacaagaaactttcgaggtgattgtcttcttggagagggaggattcggaagagtatataaagggcggctcgattccaatcagattgttgccatcaagcaactcgatcgtaatggattgcaagggaacagggaatttcttgctgaagtgctgatgctaagtcttgtacaccatcctaacctggtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="52319" stop="47338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52019" g_stop="51824" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="49697" i_length="2127">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49696" g_stop="49509" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="384" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49508" i_stop="47743" i_length="1766">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47742" g_stop="47638" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="489" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-M869" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52019" e_stop="51824"/>
          <exon e_start="49696" e_stop="49509"/>
          <exon e_start="47742" e_stop="47638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTGGTAACTATAAAAATGCATATTTTTTCGTATAAGAAGACTAATTTAATGATTATGTGAAATGGGGTTGTTGTATATTTGTCAAATTTCTAGTTTTTATTGTGATTTTGGAGGTTTAAGTTTTAATGGTTCTGTAAAATTGGTCTTTATGTTATTTTGGAGCTTCAAGTTTTAGTGATTCTGTGAAATTGGTTTGTTGTATATTTGTCAAATTTCTAGTCTTTATTGTGATTTTGGAGCTTTAAGTTTTAATAGTTCTATGAAATGGGTTTGTTGTACTTTTGTCAAATGATTTGAAGTTTTTTTTTTTTGTGATAATTTTGTGAAATGGATTTGTTGTATATTTGTCGAATTTCTCGGTTTTATGTGAATTTGGAGCTTTAAGTTTTCATTTTCAATGATTCTGCGAAATGGGATTGTGTTGTATTATTGTTGAATTTCTCTAATTGGGGATGATTCAGAGCTTCAAGTTTTAATGATTCTGTTAAATGGGCTTGTTGTGTTTTTGTCAAATTTCTTAGTCTTTGGATGATTTTTGGAGCTTCAGTTCTACATTATTGCTTTAGTTTTACATTATTTAGAGAAATTTTGGAGGTGTCTAAGAACTCCTAGTTTGCCTAAAAAACATGAGGAATTTGTTAACATTGAATGAAATGAGCCCGAATTGAGCAAAATGATATAGAGGATTCATATAGCCGACTCCAATTAAATTAGGATTGAGGGACAATTGGTTGACTGATTGATTGCTTTAAGATGTACAGTTGCAACTGTTTGGTGGCGTGGAACTATATCCCTTTTGACAATCAATGGTAGTTATGGTCATTTTTTGCTAATATTTAGGGGTAGCCCCAACCTGCTAAATTTTGCCTTATTGCTTTGGTTGTTTTCATGGAGTTAATTAGTAGAGACGAAGGATTTAGGAGGTGCCCGAAAATGAATCAGAATGTAGTATGAAGGGTTTTAGGAGCTAGTTTTGTGGCTTAAGCTGGCGGATATTGCTCTTAAATATGGAAGTGGTTAAGTTTGCCATCCGGTGACTTAGAACAATGTCAACTGTGCTTTAGGGTGAAGAAGTGAAGATGTCTCTTAAGGTTGCATGAAAGTCTGTTTCATGGTTTCATCAGATATATTATGTCAACGAGCATTTGCGCTTCTAGGATCAAAAGGAAGCATAGAAATGACGAATGAAAAGATAACATGGTGAGCTGTCAGTAATCTTAAGGTCAATTGGCACCCAAAGGTGTGGCTAGCAGTCAATGACGTTTGAATAGATTATGGGAAACCAAGGTTCAAATACCAATAGAGACAAAAAAACACTAAATGATTTCTTTCATTATGTAAGTTTTGGTGGACAGAGTTACCCGGTAAATATGCTGATGGGGAAGTATTAGGTACTCGATGGATTAGTTAAACAGTGACAAGTTTGATTACAATATTTATTTTAAGAGGAGTCTTGAGGTCAATTATTCCTGTCTCCTTTCTGGAAAGGAGCAACTTTGCTTCTTTCCCTCCCCATTTTTAATGTTTTTGTTTGTATTAATAAGGTGAGATATACTAAAACAAGAGCCATCCAACTCTAGTCAACTCCGCAAAATTTCTTTTAAGAAAAAAATGAGGAGCTTTCTATTGGATATCCAAGAGTTTCAACTTCTATTTTACCATCCAAGTTTCACAAAGCTACTTTGTTATGCAAATTTAACTCATCTCTTTTTCTTTTTTAATGTTCCATCAGGTGACTCTAGAAAGTTTTCCTTTCCAAATGGACCCGGTAATGTGGGAACCGGTTGATAGGGAATAATAACGGCTGTTGCATAGTAGAAATGAATTCTTGGTGCTATTTACCGAGTTAGCTAATCCAACCATGCTGTTCTTACTGTATCTTGACTGTCACAATAGAAAATTTCTTGAGAGCACTCAGTTATTGAAACTGCACAATTTCCCAGTACATCAAGTGGTTGTACCAAGTTCTGTATCATGCATTTCCCAAGATTGGACTAATTGAGAAGTGATCTAGATCGTTTTGGCTTCTTGATCACCTAGTTGGCTATATTGATGTTTTTGAACTGTTTGGTTTGACTTTCAGTTCCGTGTTTTTTTTTCTTTTGTAATTTCTCTTTTTTTCGTGTTCAGATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAGGTCTTTTCTGCCACTTTTTTCTTTTCAATAATGGAATGAAGTTCTTTTTTCGGTCTCCATCTGGTAATGCCCCCAATCCACCAGATTTTGGTTGAACTTGCTATTTTGTCGCATAGTGTTCATGAGGGAGATTAGTATGGTTTTCACTATTAAATTTCCTTTCTTCTTTCTTAAATTGTGTGCAAGTCTACCCTCTTCTTTATGGAAGGAGTAGGACGAAAATGACCTTGGTGTTTATCACTTCCTTTTGTTTATTATAATAATGGTAATGACGATGATCTATTGGTACGGGTGCTACTTGTGATGTGTGGGATATGGGTGCATGTCATAGGTTCAAACCCTGCCATAGACAACAACTTACTATAATCCATCAAGTTTTAAACCGTGCGCAACTAGTCCTTGTGGATTTCTCTTCTTTTGTTCCTCTTTTATGAAGCTCTCCAGCATATCCTTAATGCTGAAAAATACAGCATTTAGAAAGAACCTTGATGACGACTTTGAAGTGCACATAAGTGAGGCGAAGTGCGCAACACGTTTTGAGCCTTGCTTCAGGGCTTAAGCGCGCCTTTGATAACACTGCTTGCTAGGCTTTATAACATTTCATTTATATAAACATCAACCTACAAAACATGAAAATACAGAAGATATAAAAGCAGCACTCCGTTGTTGTGGTAGGCAATGCAGTTTGTCCAGTATTTTTCTCCACTCTGGTAAATCTTGGCCTCTGATATGTATGTGAAGGGCTACCTCTCTGCAGACTTATCAACAAAATAGTGAGCTACATTGAACCTTAGTCCATAATCCATTTCTTTCTCTCCAAATAATAGCCACAACCATAAATTATATACTACATATAAATCATCTGCTGCCAGATTTTGTTGTCGCCTACCTGTTAGCCCAATTAACATACCTAACACTTTGGAGGTGATTGCCTTCGTGGAGAGAGGATTTGAAAGAGTATATAAAGGGCGGCTCAATTCCAGTCAGGTTTTTTTCTGTTACTTTTTTCTTTTCAATATTAGAATGAAGTTCTTTTTTTGGTCCCTCCAGTCTGGTTATGCCTCCAATCCACCAGGTTTTGGTTGAACTGGCTGTTTTGTCGCATAGGGTTCATGAGGGAGATTAGATCAATCAACTATGGTTGGGGTATAAATGGACGTGGGCGGGGGATTTGGTGCATGAAGTGGAGTTACTGGAAAAATTGGGGTACTTTTCTCAAAACGAAATGAGCTTTTTGATTTGCAATTGAAACCTCAAAACTATTGCAGAGAGTTTGGATCTTTATCTTTTGATTTTGATCTTCTTCTGGCAATTTTTTAACAAAATCATTCGACAGTCGCATCACCTGTTATTGTGTTTGCTTTCATAGGTTTTCAGAAAGTGTAAAATATGGAGGTTACCTTTTCTTTTCTTCTTGCTTGTTTATTACAGAGGGTGGTTCCAAAGTAGGTAGTGGGCTGGCGGCCAATTAAGAGAAGTGAGGAAACTGAATAATTAAAAGCCGTGACATTTGAATTGTCTAAGAATTGTTTTGTGACGAGGGTAGTTAGTTTTGTCTTAACAATGGCCATGTGTCATTTAAAGATAATGCCACTTGGCTGTTTGTGGGATTCTGCCCCTGCTTCAATAAATACTGTATAAATATATAGATAGATAGATAGATATAGACTTTATCTTCGGGTACTGTGCTTAATAATATTGCTTTGGACATCTAAGATGTGGGCTGGATCTATGCTTTGACACCTCTTCTCATATATCTTCTATAGATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCTGGTAAAT</genome_strand>
        <mrna_strand>CCCTCTCTCGTGTGTAGGGTGCCACTGGTCAATACTTTGAGTCTATATATAGCCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGATCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGCTGAAGTGCTGATGCTAAGTCTTGTACACCATCCTAACCTGGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M869-2" ref_strand="+" ref_description="SGN-M869-2 SSR196-2 [est_by_read]">
      <seq>gtgaaagggctttttcttttttccctctctcgtgtgtagggtgccactggtcaatactttgagtctatatatagtctatattatgtatagagagagagagtagaaggaggtgagagaaatgggttggtttccatgttctggatcattgaagcagacctcaaagaagaggaagaagaagaagaagaaagattcgtctaattcggttcaactcggttgtgataagttgaaggcaaagactctgttaggttcaaaggagtatgttaaggatggcgagtctggtcaaattggagccaagatttttaaatttcgtgaattagcagttgcaacaagaaactttcgaggtgattgtcttcttggagagggaggattcggaagagtatataaagggcggctcgattccaatcagattgttgccatcaagcaactcgatcgtaatggattgcaagggaacagggaatttcttgctgaagtgctgatgctaagtcttgtacaccatcctaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="52341" stop="47345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52041" g_stop="51824" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="49697" i_length="2127">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49696" g_stop="49509" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="406" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49508" i_stop="47743" i_length="1766">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47742" g_stop="47645" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="504" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-M869-2" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M869-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52041" e_stop="51824"/>
          <exon e_start="49696" e_stop="49509"/>
          <exon e_start="47742" e_stop="47645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTGGTAACTATAAAAATGCATATTTTTTCGTATAAGAAGACTAATTTAATGATTATGTGAAATGGGGTTGTTGTATATTTGTCAAATTTCTAGTTTTTATTGTGATTTTGGAGGTTTAAGTTTTAATGGTTCTGTAAAATTGGTCTTTATGTTATTTTGGAGCTTCAAGTTTTAGTGATTCTGTGAAATTGGTTTGTTGTATATTTGTCAAATTTCTAGTCTTTATTGTGATTTTGGAGCTTTAAGTTTTAATAGTTCTATGAAATGGGTTTGTTGTACTTTTGTCAAATGATTTGAAGTTTTTTTTTTTTGTGATAATTTTGTGAAATGGATTTGTTGTATATTTGTCGAATTTCTCGGTTTTATGTGAATTTGGAGCTTTAAGTTTTCATTTTCAATGATTCTGCGAAATGGGATTGTGTTGTATTATTGTTGAATTTCTCTAATTGGGGATGATTCAGAGCTTCAAGTTTTAATGATTCTGTTAAATGGGCTTGTTGTGTTTTTGTCAAATTTCTTAGTCTTTGGATGATTTTTGGAGCTTCAGTTCTACATTATTGCTTTAGTTTTACATTATTTAGAGAAATTTTGGAGGTGTCTAAGAACTCCTAGTTTGCCTAAAAAACATGAGGAATTTGTTAACATTGAATGAAATGAGCCCGAATTGAGCAAAATGATATAGAGGATTCATATAGCCGACTCCAATTAAATTAGGATTGAGGGACAATTGGTTGACTGATTGATTGCTTTAAGATGTACAGTTGCAACTGTTTGGTGGCGTGGAACTATATCCCTTTTGACAATCAATGGTAGTTATGGTCATTTTTTGCTAATATTTAGGGGTAGCCCCAACCTGCTAAATTTTGCCTTATTGCTTTGGTTGTTTTCATGGAGTTAATTAGTAGAGACGAAGGATTTAGGAGGTGCCCGAAAATGAATCAGAATGTAGTATGAAGGGTTTTAGGAGCTAGTTTTGTGGCTTAAGCTGGCGGATATTGCTCTTAAATATGGAAGTGGTTAAGTTTGCCATCCGGTGACTTAGAACAATGTCAACTGTGCTTTAGGGTGAAGAAGTGAAGATGTCTCTTAAGGTTGCATGAAAGTCTGTTTCATGGTTTCATCAGATATATTATGTCAACGAGCATTTGCGCTTCTAGGATCAAAAGGAAGCATAGAAATGACGAATGAAAAGATAACATGGTGAGCTGTCAGTAATCTTAAGGTCAATTGGCACCCAAAGGTGTGGCTAGCAGTCAATGACGTTTGAATAGATTATGGGAAACCAAGGTTCAAATACCAATAGAGACAAAAAAACACTAAATGATTTCTTTCATTATGTAAGTTTTGGTGGACAGAGTTACCCGGTAAATATGCTGATGGGGAAGTATTAGGTACTCGATGGATTAGTTAAACAGTGACAAGTTTGATTACAATATTTATTTTAAGAGGAGTCTTGAGGTCAATTATTCCTGTCTCCTTTCTGGAAAGGAGCAACTTTGCTTCTTTCCCTCCCCATTTTTAATGTTTTTGTTTGTATTAATAAGGTGAGATATACTAAAACAAGAGCCATCCAACTCTAGTCAACTCCGCAAAATTTCTTTTAAGAAAAAAATGAGGAGCTTTCTATTGGATATCCAAGAGTTTCAACTTCTATTTTACCATCCAAGTTTCACAAAGCTACTTTGTTATGCAAATTTAACTCATCTCTTTTTCTTTTTTAATGTTCCATCAGGTGACTCTAGAAAGTTTTCCTTTCCAAATGGACCCGGTAATGTGGGAACCGGTTGATAGGGAATAATAACGGCTGTTGCATAGTAGAAATGAATTCTTGGTGCTATTTACCGAGTTAGCTAATCCAACCATGCTGTTCTTACTGTATCTTGACTGTCACAATAGAAAATTTCTTGAGAGCACTCAGTTATTGAAACTGCACAATTTCCCAGTACATCAAGTGGTTGTACCAAGTTCTGTATCATGCATTTCCCAAGATTGGACTAATTGAGAAGTGATCTAGATCGTTTTGGCTTCTTGATCACCTAGTTGGCTATATTGATGTTTTTGAACTGTTTGGTTTGACTTTCAGTTCCGTGTTTTTTTTTCTTTTGTAATTTCTCTTTTTTTCGTGTTCAGATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAGGTCTTTTCTGCCACTTTTTTCTTTTCAATAATGGAATGAAGTTCTTTTTTCGGTCTCCATCTGGTAATGCCCCCAATCCACCAGATTTTGGTTGAACTTGCTATTTTGTCGCATAGTGTTCATGAGGGAGATTAGTATGGTTTTCACTATTAAATTTCCTTTCTTCTTTCTTAAATTGTGTGCAAGTCTACCCTCTTCTTTATGGAAGGAGTAGGACGAAAATGACCTTGGTGTTTATCACTTCCTTTTGTTTATTATAATAATGGTAATGACGATGATCTATTGGTACGGGTGCTACTTGTGATGTGTGGGATATGGGTGCATGTCATAGGTTCAAACCCTGCCATAGACAACAACTTACTATAATCCATCAAGTTTTAAACCGTGCGCAACTAGTCCTTGTGGATTTCTCTTCTTTTGTTCCTCTTTTATGAAGCTCTCCAGCATATCCTTAATGCTGAAAAATACAGCATTTAGAAAGAACCTTGATGACGACTTTGAAGTGCACATAAGTGAGGCGAAGTGCGCAACACGTTTTGAGCCTTGCTTCAGGGCTTAAGCGCGCCTTTGATAACACTGCTTGCTAGGCTTTATAACATTTCATTTATATAAACATCAACCTACAAAACATGAAAATACAGAAGATATAAAAGCAGCACTCCGTTGTTGTGGTAGGCAATGCAGTTTGTCCAGTATTTTTCTCCACTCTGGTAAATCTTGGCCTCTGATATGTATGTGAAGGGCTACCTCTCTGCAGACTTATCAACAAAATAGTGAGCTACATTGAACCTTAGTCCATAATCCATTTCTTTCTCTCCAAATAATAGCCACAACCATAAATTATATACTACATATAAATCATCTGCTGCCAGATTTTGTTGTCGCCTACCTGTTAGCCCAATTAACATACCTAACACTTTGGAGGTGATTGCCTTCGTGGAGAGAGGATTTGAAAGAGTATATAAAGGGCGGCTCAATTCCAGTCAGGTTTTTTTCTGTTACTTTTTTCTTTTCAATATTAGAATGAAGTTCTTTTTTTGGTCCCTCCAGTCTGGTTATGCCTCCAATCCACCAGGTTTTGGTTGAACTGGCTGTTTTGTCGCATAGGGTTCATGAGGGAGATTAGATCAATCAACTATGGTTGGGGTATAAATGGACGTGGGCGGGGGATTTGGTGCATGAAGTGGAGTTACTGGAAAAATTGGGGTACTTTTCTCAAAACGAAATGAGCTTTTTGATTTGCAATTGAAACCTCAAAACTATTGCAGAGAGTTTGGATCTTTATCTTTTGATTTTGATCTTCTTCTGGCAATTTTTTAACAAAATCATTCGACAGTCGCATCACCTGTTATTGTGTTTGCTTTCATAGGTTTTCAGAAAGTGTAAAATATGGAGGTTACCTTTTCTTTTCTTCTTGCTTGTTTATTACAGAGGGTGGTTCCAAAGTAGGTAGTGGGCTGGCGGCCAATTAAGAGAAGTGAGGAAACTGAATAATTAAAAGCCGTGACATTTGAATTGTCTAAGAATTGTTTTGTGACGAGGGTAGTTAGTTTTGTCTTAACAATGGCCATGTGTCATTTAAAGATAATGCCACTTGGCTGTTTGTGGGATTCTGCCCCTGCTTCAATAAATACTGTATAAATATATAGATAGATAGATAGATATAGACTTTATCTTCGGGTACTGTGCTTAATAATATTGCTTTGGACATCTAAGATGTGGGCTGGATCTATGCTTTGACACCTCTTCTCATATATCTTCTATAGATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCT</genome_strand>
        <mrna_strand>GTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTGGTCAATACTTTGAGTCTATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGATCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGCTGAAGTGCTGATGCTAAGTCTTGTACACCATCCTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7428-2" ref_strand="+" ref_description="SGN-M7428-2 C2_At2g37240-2 [cosii_markers]">
      <seq>gaatcctctgttttgccttctttacgccaatggcgatttctctcaattctggccttactgttgcagttagcagaagtattcgtcaaacctcacttcacaatgttaatttgacaacaaacccatttagttttaactgcaatttcagcttaacccccaatgtttcagccatttctgcctcccacaggtcctcctctgttatctacagctccacaggaactgagactccagtggtgagtgaggacaccatcaatgtgttggacgatgttcaagtatttgatctgaatggacaaggagtacctatttcggatctgtggaaagataggaaagcagttgtcgcctttgctcgtcattttggatgtgtcctttgtcgcataagagctgattatcttgcagctgagaaggataagatggatgcagctggagttgcacttgttttgattggacctggtagtgttgatcaggccagaaaattctatgagcaaacaaagtttaaaggagaggtttatgctgatccaagctataggtcttatgaggctctgagatttgtgtcaggcattacaactacattcactcccggggcaggtttgaaaataatacaggcatacatggaaggctatagacaagattgggagctttctttcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="59144" stop="64100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59444" g_stop="59656" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61455" g_stop="61596" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="355" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61699" g_stop="61744" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="401" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62187" g_stop="62246" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="461" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62908" g_stop="62944" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="498" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63551" g_stop="63630" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="578" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63734" g_stop="63800" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="645" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-M7428-2" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7428-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59444" e_stop="59656"/>
          <exon e_start="61455" e_stop="61596"/>
          <exon e_start="61699" e_stop="61744"/>
          <exon e_start="62187" e_stop="62246"/>
          <exon e_start="62908" e_stop="62944"/>
          <exon e_start="63551" e_stop="63630"/>
          <exon e_start="63734" e_stop="63800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAGGTTAGCTTATCTTCTTTGTCTTGTTATAAGTACTCCAATTTTGAGTATGTACCTCAATTCGCATTTACTGTGTCAGTTGGATACTCGAACTTATGTGTTACGTCAACATTGGGTGTCCATGAGGTATAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTATAGATGTACGCGCTCAAAGTTTGAGTGTTTAGTTGCTAGTTAACATTATGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTATATGTACACGTTCAAAGTTGGAGTGTTATGTTGCGAGATTAACACTAAGTTGAGGTGTTGTAGATGTAAACGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTTGGAGTGTTTAGTTGCTAGTTAACACTAGTTGAGGTTTTGTAGATGTACACGTTCAAAGTTGGAGTGTTTAATTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACAATTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAATTGAGGGGTGTTGTATATGTACATGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACGCACTCAAAGTTTGAGTGTTTAGTTGCCAGTTAACACTAAGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTAGATGTACGCATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAACTTGAGGTGTTGTAGATGTACACATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTTAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTAGTTACGTGCTAGGTGAGGCCAAGTTAAGTGTTTATTTATATATTATGTCTAGTGATATTATGTGAACTATAGAGGTAGTGTTGGGTGTCCACTTGACATACAACAACTTGTATCACGTATTCAAAGTTTGAGTGTTGTAGATGTCCATGAGGCACATCGGGCGAATTGGAGTGTTTAGTTGGTCTTTGAGACTATACATTGAGGTATCTAGACGTGCACGACGTGCACTTCTAAAGTTGGAGTAGTTACTTGTGAAGTCAAGAGTTGAGTGTGTGTTTATAAATTAATGACTAATGTTATTATGTGAATTAGAGAAATAGTACATTGGGTTCAAATCACAATTTCTTTCGTATATTGGATTCTGGATAGATTATTTATACATATTAAATGAATTTCTCGAAACAAATATGGGGTTTGAGCCTAAGTTGCTAGTTATGCCGAACTCATAACTAGAGGCAGACCCAAGATTTGAAGGCGACGGGAATACCACTATCTTTAGTATGTCAATTGAAGTAAAGAATCAATTAAACTCCATAATAATACGAACTGTTGTAGTCAAGACTCGAATGCAGGTTGCACATTCGCGCTCAAGGGCCAAAGTGACACGATAACCAGATGTCCCAATCCAACAGATATGTTTTAGGGGTCCTTTTATAAAATATGATAGTTCTTCAAGGTATGTTATACACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCCATAGGAAGCATTCTCTCTACCTCCCAAGGTAGAGGTGAAGTCTTCATGAACACTACCCTCCCTAGATCCCACTTGTGGGATTAGACTGAGTATGTTGTCGTTTTAATTCAGATTTATGTTATCTTCAGTGCGTTAAAAAAGTTATTCTAACCACACCGATGACTGTGCACATATCCTTAAGTTCCACCATTACTACAGTTTACATCCTTATACTGTTTTCTGTTCACAGGATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAGGTAAATAGCAGCGATGCTTCTTGCTCTGAGTTGCTTATCCACAGATTAACTTTCTTTTTTCGTTCCCCTTCGAGATATTTTTTAAATGGTTACTTATCAACAACAACAAACAAATCTTAACCAGTTATGACACCTTCCATTTCCTTGTCCTAAGTAACATCATCCCACTCTTAGAAGTTGCTTATCAACTCTCGTAATCATTTGGGTATGACGAATAAAGGCATAATTGATAAAGAAACGATCAAACTTGACCTCAGCTGACAAGTAAAAGTACTCAAACTTTGTGAGTGGAATCTAGACACCTCAACTTGGTCATAGCTGACAACTAAACGCTCCAACTTGTCCACATTGTGTCTCGTGGATACTCGACTTTGACGTGACACATACATTTTGGAGGTGTCTAGATAATCATTTTTTAAGTGGAGTGTCCAACTGGAATAACGGAGAGTTATGGTGTTAGATGTGCATACTCAAAATTGGAGTGTTACTTACCAGTTACGGCGAAGTTTGAGTCTGTTTATGTATTACGCCAAGAATAGAAGCTTTTTCTATTACAAGGATCTTCTTCGTCCTTTCTGTTTCTTGCTCTTTTATGATTTCAAGAGCTCAGTAAAGCTGGATTGAGTTATGACTTGAGTCCTCTTCTTTTTCTTTTCTCCAGGCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAGGTAAGTTTCAAATAAAAAACCTTGTGTCCGCAGTGGCTCAGTGTCTGTTACTGGACGTCTGAATATCCCATGAACTCGGTTCTAGCAATGTCCACTGATATATATGCTCCACAGGACCAGTGACCTCGCTCAATGCTATTGCACTATAAGTTACAGTTTCCCCTAAAAGAAAATTTTCAGCATTAGTAGAATTAACAATGTGAAGAACTGAGGATATAAGATATATTATATCTGATGTGTATAATTCTAAAGCTACGGGAAGGGTTAAAACAGGTAAAAATTCACAAAACGGCTAAGAGAGTTGCTACATCATTCACTACTAAAACGTACATCCATCCTCGAACATAAAGAGAAAGAAAGTACCAGGGCCTGATCATGTGATGTTATGTTCCTCTTCTATACAAATTAGAAAGATCCAGAAGACAAAAACCTGTCACGACCCAAAAAAAATCGAGAATTCATTTGTAAGACAGCTGCTAGAAGTGTTGCTAGTTTGTTACATTGGCATTCTTATTAAGTTAAAGTATAGTCTGGTTTTGTTTCAAAGCTTTCTTTGTATGCGAATTTTTCAAAAAATTACACCTGACGGAGATTCATTTATTTCAGAGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGGGTAATTCAAATTAGATTGACACTCATAAAGTGTAACATTTCCAGCTTCTCAATGTATTCTAATAGTGGTCTTGTTCATCTTTTCTTATCTACATCAAATCTAGGCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAA</genome_strand>
        <mrna_strand>GAATCCTCTGTTTTGCCTTCTTTACGCCAATGGCGATTTCTCTCAATTCTGGCCTTACTGTTGCAGTTAGCAGAAGTATTCGTCAAACCTCACTTCACAATGTTAATTTGACAACAAACCCATTTAGTTTTAACTGCAATTTCAGCTTAACCCCCAATGTTTCAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATCTGTGGAAAGATAGGAAAGCAGTTGTCGCCTTTGCTCGTCATTTTGG......................................................................................................ATGTGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGATGGATGCAGCTGGAGTTGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAAAATTCTATGAGCAAACAAAGTTTAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCAGGCATTACAACTACATTCACTCCCGGG.......................................................................................................GCAGGTTTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7428" ref_strand="+" ref_description="SGN-M7428 C2_At2g37240 [cosii_markers]">
      <seq>aatcctctgttttacactctttacgtcaatggcgatttctctcaattctggtcttactgtggcagttagcagaagtattcgtcaaaccccacttcacaatgttaatttgacaacaaacccgtttagtttcaactgcaatttcagcttaacccccaattttctagccatttctgcctcccacaggtcctcctctgttatctacagctccagagaaactgagactccagtggtgagtgaggacaccatcaatgtgttggacgatgttcaagtatttgatctgaatggacaaggagtacctatttcggatttgtggaaagataggaaggcagttgttgcctttgctcgtcattttggatgcgtcctttgtcgcataagagctgattatcttgcagctgagaaggataagatggatgcagcaggagtcgcacttgttttgattggacctggtagtgttgatcaggccagaaaattctacgagcaaacaaagtttaaaggagaggtttatgctgatccaagctataggtcttatgaggctctgagatttgtgtctggcattacaaccacatttactcccggggcgggtctgaaaataatacaggcatacatggaaggctatagacaagattgggagctttctttcgaaaaggacaccaggacacgaggtggctggcgacaaggaggaattattgttgcaggtcctggtaaaaataacattacatacattcacaaggacaaagaagcaggtgatgatccagatataaaagaaatcttgaatgcttgctgtgtacaaggctaaatttaatcaatacagtctatatattatgtgtatatacagacaatttgaagagatacgtatctcgatagacacaaactagtacatgaacaatccacacttttggttcaaataagcaatactagagttattattccacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgggactaggagagaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="59145" stop="65347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59445" g_stop="59656" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61455" g_stop="61596" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="354" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61699" g_stop="61744" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="400" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62187" g_stop="62246" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="460" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62908" g_stop="62944" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="497" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63551" g_stop="63630" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="577" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63734" g_stop="63825" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="669" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63826" i_stop="64359" i_length="534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64360" g_stop="64420" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="730" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64421" i_stop="64839" i_length="419">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64840" g_stop="65048" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="939" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="947" polyA_stop="977"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-M7428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59445" e_stop="59656"/>
          <exon e_start="61455" e_stop="61596"/>
          <exon e_start="61699" e_stop="61744"/>
          <exon e_start="62187" e_stop="62246"/>
          <exon e_start="62908" e_stop="62944"/>
          <exon e_start="63551" e_stop="63630"/>
          <exon e_start="63734" e_stop="63825"/>
          <exon e_start="64360" e_stop="64420"/>
          <exon e_start="64840" e_stop="65048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAGGTTAGCTTATCTTCTTTGTCTTGTTATAAGTACTCCAATTTTGAGTATGTACCTCAATTCGCATTTACTGTGTCAGTTGGATACTCGAACTTATGTGTTACGTCAACATTGGGTGTCCATGAGGTATAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTATAGATGTACGCGCTCAAAGTTTGAGTGTTTAGTTGCTAGTTAACATTATGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTATATGTACACGTTCAAAGTTGGAGTGTTATGTTGCGAGATTAACACTAAGTTGAGGTGTTGTAGATGTAAACGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTTGGAGTGTTTAGTTGCTAGTTAACACTAGTTGAGGTTTTGTAGATGTACACGTTCAAAGTTGGAGTGTTTAATTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACAATTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAATTGAGGGGTGTTGTATATGTACATGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACGCACTCAAAGTTTGAGTGTTTAGTTGCCAGTTAACACTAAGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTAGATGTACGCATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAACTTGAGGTGTTGTAGATGTACACATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTTAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTAGTTACGTGCTAGGTGAGGCCAAGTTAAGTGTTTATTTATATATTATGTCTAGTGATATTATGTGAACTATAGAGGTAGTGTTGGGTGTCCACTTGACATACAACAACTTGTATCACGTATTCAAAGTTTGAGTGTTGTAGATGTCCATGAGGCACATCGGGCGAATTGGAGTGTTTAGTTGGTCTTTGAGACTATACATTGAGGTATCTAGACGTGCACGACGTGCACTTCTAAAGTTGGAGTAGTTACTTGTGAAGTCAAGAGTTGAGTGTGTGTTTATAAATTAATGACTAATGTTATTATGTGAATTAGAGAAATAGTACATTGGGTTCAAATCACAATTTCTTTCGTATATTGGATTCTGGATAGATTATTTATACATATTAAATGAATTTCTCGAAACAAATATGGGGTTTGAGCCTAAGTTGCTAGTTATGCCGAACTCATAACTAGAGGCAGACCCAAGATTTGAAGGCGACGGGAATACCACTATCTTTAGTATGTCAATTGAAGTAAAGAATCAATTAAACTCCATAATAATACGAACTGTTGTAGTCAAGACTCGAATGCAGGTTGCACATTCGCGCTCAAGGGCCAAAGTGACACGATAACCAGATGTCCCAATCCAACAGATATGTTTTAGGGGTCCTTTTATAAAATATGATAGTTCTTCAAGGTATGTTATACACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCCATAGGAAGCATTCTCTCTACCTCCCAAGGTAGAGGTGAAGTCTTCATGAACACTACCCTCCCTAGATCCCACTTGTGGGATTAGACTGAGTATGTTGTCGTTTTAATTCAGATTTATGTTATCTTCAGTGCGTTAAAAAAGTTATTCTAACCACACCGATGACTGTGCACATATCCTTAAGTTCCACCATTACTACAGTTTACATCCTTATACTGTTTTCTGTTCACAGGATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAGGTAAATAGCAGCGATGCTTCTTGCTCTGAGTTGCTTATCCACAGATTAACTTTCTTTTTTCGTTCCCCTTCGAGATATTTTTTAAATGGTTACTTATCAACAACAACAAACAAATCTTAACCAGTTATGACACCTTCCATTTCCTTGTCCTAAGTAACATCATCCCACTCTTAGAAGTTGCTTATCAACTCTCGTAATCATTTGGGTATGACGAATAAAGGCATAATTGATAAAGAAACGATCAAACTTGACCTCAGCTGACAAGTAAAAGTACTCAAACTTTGTGAGTGGAATCTAGACACCTCAACTTGGTCATAGCTGACAACTAAACGCTCCAACTTGTCCACATTGTGTCTCGTGGATACTCGACTTTGACGTGACACATACATTTTGGAGGTGTCTAGATAATCATTTTTTAAGTGGAGTGTCCAACTGGAATAACGGAGAGTTATGGTGTTAGATGTGCATACTCAAAATTGGAGTGTTACTTACCAGTTACGGCGAAGTTTGAGTCTGTTTATGTATTACGCCAAGAATAGAAGCTTTTTCTATTACAAGGATCTTCTTCGTCCTTTCTGTTTCTTGCTCTTTTATGATTTCAAGAGCTCAGTAAAGCTGGATTGAGTTATGACTTGAGTCCTCTTCTTTTTCTTTTCTCCAGGCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAGGTAAGTTTCAAATAAAAAACCTTGTGTCCGCAGTGGCTCAGTGTCTGTTACTGGACGTCTGAATATCCCATGAACTCGGTTCTAGCAATGTCCACTGATATATATGCTCCACAGGACCAGTGACCTCGCTCAATGCTATTGCACTATAAGTTACAGTTTCCCCTAAAAGAAAATTTTCAGCATTAGTAGAATTAACAATGTGAAGAACTGAGGATATAAGATATATTATATCTGATGTGTATAATTCTAAAGCTACGGGAAGGGTTAAAACAGGTAAAAATTCACAAAACGGCTAAGAGAGTTGCTACATCATTCACTACTAAAACGTACATCCATCCTCGAACATAAAGAGAAAGAAAGTACCAGGGCCTGATCATGTGATGTTATGTTCCTCTTCTATACAAATTAGAAAGATCCAGAAGACAAAAACCTGTCACGACCCAAAAAAAATCGAGAATTCATTTGTAAGACAGCTGCTAGAAGTGTTGCTAGTTTGTTACATTGGCATTCTTATTAAGTTAAAGTATAGTCTGGTTTTGTTTCAAAGCTTTCTTTGTATGCGAATTTTTCAAAAAATTACACCTGACGGAGATTCATTTATTTCAGAGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGGGTAATTCAAATTAGATTGACACTCATAAAGTGTAACATTTCCAGCTTCTCAATGTATTCTAATAGTGGTCTTGTTCATCTTTTCTTATCTACATCAAATCTAGGCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTGGTAAGTCATTTTCCTCATCTGCTATTATAATCTTCTGATTTGTTTTTCAAAGGTCTTTCGGAAACAGTCTCTCTACCTCCACGAGGTAGGGGTAAGGTCACACCCTCTCGTCCCCAAACTCCACCTAGTGGGATTACACTGGGTATGTTGCTGAATCTGTTTGCTAATAGTGCAAGTACATATCTTGTAATTGGACGAGACTTACTATTTCTAGAAGTTGCACAATTTTGATGGTTGACTCCTGATTTCCTAACACCGTATCAAGTTTGGTGTAATAAGAAAACAAGGAACAATTAGCTTATCTAAGCAATTCCGTTGTTGTAAAATCCACCTGAAGTGAATGGGGTTTTAAGCTAACATAAAAGAATTTCATCATTTCCGTTTATCTATAGGTAAACCATAAGCCATAGTTTCACTATCATTTTAGCTTATAGTTGGTATATGACATTCTTGGTTGTTCGATTCTTTATAATTCTGTGCAAAACAACACAAATGCAGTAACATGTGAAACTAATAAGCTTGTTAAATTATCAGGCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAGGTAAGTCTCCGTCCCTTCGTCTTCCCAATCTTGATACACAATTTATACTCCATTAAATAACTCGTCATTGTCTGAGAATAGCTCGAAGCTTCATGCTCGCCAATTAGTTAGTTTTCGGCTTTACTTCTCAACAGAGATTTAAGTTTCAATACATAATTAGAGTTTGAGTTTTATCAGTTTCATTCTGTATCTGTTCGCGTGGAGCTGTATTGACTCCGTTCTGATATACAGTGAACAAATACAACAGATAGAGTGAATCACTGAGTTTTTTTTAAGTAAATTATTGCTACATGTGGTAATTAACTAAACTATAGCTATGATTGATAATTAAGGCTCAAAGTTCTGCTATTTTCGAAATTTCGTCATTTTTTTAATCATATGAAACTTGGATAATTCTTGTTATTTCTTGATTGTGGCAGGACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAACAAC</genome_strand>
        <mrna_strand>AATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGG......................................................................................................ATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGG.......................................................................................................GCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7244-2" ref_strand="+" ref_description="SGN-M7244-2 C2_At2g20280-2 [cosii_markers]">
      <seq>gagaacccaatctccgcctccggccacactcttaatttatcgtcctagggttttcagtcgccggaaaagaaattcgattttccgacgaatctatcgaggtgattgaggatttggatgagaatacaagatgccgccaaagcaatctaaagccgatattgcaaagaagcagaaggtagttgaagacaagacgttcggtcttaagaataagaacaagtcgaagaatgttcagaaatatgttcagtctttacagcaaaatgttgtgcctaaagctgatcctaagaaacttgacgccaagaaaaagaaggaagaagagaaagctagagagaaagagcttagcgaattgttcaaagtcgctattagccaacctaaagtgcctctaggtgttgatccaaaatctattttatgtgagttctttaaggcggggcaatgtgttaagggttttaagtgcaagttctctcacgatctgaatgttcagcgaaaaggagagaagattgatattttcagcgataagcgtgatgaagatggaaaggaaacaatggacgattgggatcaagagacactggagaaggttgtggcgtcaaaaagtcaagagtataacaagaacaaaccaactgacattgtatgtaaattctttttggatgctgtggagaaaaagcagtacggttggttctgggcctgtccaaatggtaaagaatgccattacaggcatgcacttcctcctggatatattctcaagtcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="85036" stop="89303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85336" g_stop="85630" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85631" i_stop="86825" i_length="1195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86826" g_stop="86910" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="380" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86911" i_stop="87664" i_length="754">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87665" g_stop="87805" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="521" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87806" i_stop="87917" i_length="112">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87918" g_stop="88015" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="619" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88016" i_stop="88878" i_length="863">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88879" g_stop="89003" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="744" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-M7244-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7244-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85336" e_stop="85630"/>
          <exon e_start="86826" e_stop="86910"/>
          <exon e_start="87665" e_stop="87805"/>
          <exon e_start="87918" e_stop="88015"/>
          <exon e_start="88879" e_stop="89003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAGGTACCTGCTAATCTCCTTTTTTTATTTTTGGGTCTTCTTTTGGTTTTATGTTTTTTTTGGTGAATATTTAGAAATTGAATTGAGTGGAGAGGATTCATGTAGCTGACTCTAATTAGCCTTTTGATTTGAATGTAGTTGTGTTATTACTTTTATGTGATTTTTTCCGACAGATATGAAGGAAGAGGCAATGATATAACTATTCGAACTTAAATAGAGAACCGAGGATTCATATAGTTTAAAGCAATTAGCTTTTTGGATTGAGTAAGATTGCTTATTATTTTTGTGAGAGTTTTTCGATAGATATACTGGAGGCATATAGCTGTTTGAGCTCAAATAGAGTACTGAGGATTCATGTAGCTGAAGACAGTTAGCCTTTTGAGTTGTGTGTAGTTGTGTTATTAATTTTATGTGATTTTTCTATACAGGAGGCATATAGTGTTCAATTAGCTTTTTGATTTGAGTATAGTTGTGTTATTATTTTTGTGTAATTTTCCCGATAGATATACAGGAGGCATGTAGCTATTCGATCTCAAATAGAGTTTCGAGGATTTATGTAGCTGAAAGCAATTAACTTTTTGATTTGAGTATAATTGTGTTATTATTTTTTTTTCCCCGATAGTTATGCAGGTTGAGGCATATAGCTGTTTGAGCTCAAATAGAGCATCGAGGATTCATGTAACTGAAAGCAATTAGCTTTTTGATTTGAGGGTAGTTGTGTTATTATTTGTGTGATTTTTCTGATAGATATACAAGAGGCATATAGCTGACCTCAACTAGCTTGAATTTGAGGTGTAATTATGGTTCATTCTCGCATTGTGTTATTATGTATATAACTGATAGAGAGGACAATGTAGTCATGTAGCCGAGCGACTAGTTTGGATTGACACATACTTGTGTTTTGTTCTTTTTGTGTAATAGTTCTCCAACTGAAATAGGGCAGGTCGTTTCATTGTATATCCTATTCTAGTTAGATTCTGTTTGAGACATAGTTGTTTTTGTACAATACATACATTCCTCTGTTTTTAAGCCCAAACCGTGCAGGATGAATACAGACAAGTGGCATGTGTGGCTATTTCACGCCCGAGTGGATGAAATGAATATAGAAGATTATATAGTTAATCCTGTTGTTACATTATTTTTCTATGTTTTTTTTTGCATATACATTTATTGACATTTAAGCTTAATTTTGTCACAGAAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAGGTATTCTTCTTCTTTTGATTGATTTCTGTGTTGTCTTATTTCTGTGTCTCAATATTTTTTTAGTATGAAGCAGCGTCAATGTTAAAAAGTCACTGCAGCTAGTTGGATTGAAACAATTGGGAATATAGTGTAGGAAGACTTCGGGGCAATTATCTGCTTTCTTCTATATCAAACTGGGTCTATTGAAGAATTACAAACTGGACCTTAAATCTTTTGCCAGTTTTTGTAAAATTGATAAACTTTTGATATTTTATTATGGAAATTCAAAATATATCTTAATAGTAGCTTGTTAATTTATTTCAAGAGACCCTTTTCATTGTTCATAGTTCATTATCATCCCCTTATCAGTAGTGCACCAAGGGTGTGACCTAGTGGTCAATTAAGTATGAATCATGAGTCTTAGACAGAAACACTAGGTGATTTTCTTCCATGTGTCCTAGCCTCTTAGGCTTGGTGGATAGAGGAGGTATCCTGTCTTTCCCCTTTCCAGAAATTCATAGCATTATTTTCTGTTCTTTATTGATAAATTATTCATTAGAACAGTTATTAGAAATGTGGAACTGGTTGAGGTAGGCGCAAGCTTCCCCGGCCACCATGTTATTTAAAAAATACTCTCTTATAGGTGGTAGTTTGTTTTATTTCACTTACTACAAACTCTCTCTTGCATTAAAGATTTGGTGTTATTTCAATCTTCATACAAAATGTTGCTGCAAAATTTATTATATATTTATGAATGCTGGGAATTTGTGTTCAGGTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAGGTGGTTAAGCAACATTAACATTTGATATTTTGCATAAACTTTTCTTTCTCATGTGATAATATTTTACAATGGTTTTAGTGTTTATTGACTGGCATTTCTTGTCTAAAACAAGATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATTGTAAGCGTTGTCCTTTTCCATAATATACCTTGTACAGTACATACTACACAATATTTTCTTATTGCTAGAGTTCAGTAGAAGTACCCTTTTTTCACAAAAAGATGGATCCCGGGGATTTTTTTCAATGGTAGCACACTAGCACAGTTCAATGTGTGTATTGTGAGTGTACATATAGTTTCAAAGCTTGCTGGACGAGCGCACATCATAATTTTGAACCTTGCCAGACATGATGAAACCCAAGTGGGAGAGCGGGAGAGGGATAGGTCCATGCTCCCCGCAGTGTCGAACAGGTTAAAATAGGACGACCTTGAATCTTGGTTGTGCAGAATGCATGCAATATTATTTTACATATTTGTGGACATTGGGAATTGGGAAATAAATTTCTGAGCTAGCCCTCCATTTAAGTGTACTTATTATTTTGATTTTCCATTGCATGGAGCATGGTATAATGATATGCATTTTATTGGTTGGACATTGTAACCATGACCATATTCCCTCATTTTGAGGTGTATTAATCTACTTCCATTTTTGTCTAAATTTATCACTTGAAAATTTGTATATTGTTGCAACAAATTACTACTCTATCCCAGTTTATTTGGCTTTCTTTTCTTTTCTGTTCTTCCCAAGAAAAAAGTTGCACCTTTCATCCCCAGAAACTATTGACTCATTACAACACTCATTTTCTGCTACTGTTGCCTTAACTGGATAGGAAACCAGGGTACTTTTGGCGTTTTATGCATATTTAGTGTATGTGTCTATAGTCTTAATTTCCCCCTTTAAAACTCCTCCTCCAGTCAAATATTGCCAAACATGAATGCAGTGCTCGTTTCATAAATCAAGCTTATGATTTGGTTTATATGCAGGTATGTAAATTCTTTTTGGATGCTGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAAT</genome_strand>
        <mrna_strand>GAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAG................................................................................................................ATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAAATTCTTTTTGGATGCTGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M168-F" ref_strand="+" ref_description="SGN-M168-F TG254-F [rflp_markers_forward]">
      <seq>ctagttggattgaaacaattgggaatatagtgtaggaagacttcggggcaattatctgctttcttctatatcaaactgggtctattgaagaattacaaactggaccttaaatcttttgccagtttttgtaaaattgataaacttttgatattttattatggaaattcaaaatatatcttaatagtagcttgttaatttatttcaagagacccttttcattgttcatagttcattatcatccccttatcagtagtgcaccaagggtgtgacctagtggtcaattaagtatgaatcatgagtcttagacagaaacactaggtgattttcttccatgtgtcctagcctcttaggcttggtggatagaggaggtatcctgtctttcccctttccagaaattcatagcattattttctgttctttattgataaattattcattagaacagttattagaaatgtggaactggttgaggtaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="86709" stop="87786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87009" g_stop="87486" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-M168-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M168-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87009" e_stop="87486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTGGATTGAAACAATTGGGAATATAGTGTAGGAAGACTTCGGGGCAATTATCTGCTTTCTTCTATATCAAACTGGGTCTATTGAAGAATTACAAACTGGACCTTAAATCTTTTGCCAGTTTTTGTAAAATTGATAAACTTTTGATATTTTATTATGGAAATTCAAAATATATCTTAATAGTAGCTTGTTAATTTATTTCAAGAGACCCTTTTCATTGTTCATAGTTCATTATCATCCCCTTATCAGTAGTGCACCAAGGGTGTGACCTAGTGGTCAATTAAGTATGAATCATGAGTCTTAGACAGAAACACTAGGTGATTTTCTTCCATGTGTCCTAGCCTCTTAGGCTTGGTGGATAGAGGAGGTATCCTGTCTTTCCCCTTTCCAGAAATTCATAGCATTATTTTCTGTTCTTTATTGATAAATTATTCATTAGAACAGTTATTAGAAATGTGGAACTGGTTGAGGTAGGCG</genome_strand>
        <mrna_strand>CTAGTTGGATTGAAACAATTGGGAATATAGTGTAGGAAGACTTCGGGGCAATTATCTGCTTTCTTCTATATCAAACTGGGTCTATTGAAGAATTACAAACTGGACCTTAAATCTTTTGCCAGTTTTTGTAAAATTGATAAACTTTTGATATTTTATTATGGAAATTCAAAATATATCTTAATAGTAGCTTGTTAATTTATTTCAAGAGACCCTTTTCATTGTTCATAGTTCATTATCATCCCCTTATCAGTAGTGCACCAAGGGTGTGACCTAGTGGTCAATTAAGTATGAATCATGAGTCTTAGACAGAAACACTAGGTGATTTTCTTCCATGTGTCCTAGCCTCTTAGGCTTGGTGGATAGAGGAGGTATCCTGTCTTTCCCCTTTCCAGAAATTCATAGCATTATTTTCTGTTCTTTATTGATAAATTATTCATTAGAACAGTTATTAGAAATGTGGAACTGGTTGAGGTAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M168-R" ref_strand="+" ref_description="SGN-M168-R TG254-R [rflp_markers_reverse]">
      <seq>cagaacagagaacatgtaaagttgttcaactaatgagcatatttagaaaaacttagtggctatcaatagttggcaatatgaaaactaagatagtgtggtcacctgttgatcaatttcttcttcaataggcatcttgtcagcttcctcttgtaacaaggctttcatttgtgacttgagaatatatccaggaggaagtgcatgcctgtaatggcattctttaccatttggacaggcccagaaccaaccgtactgctttttctccacagcatccaaaaagaatttacatacctgcatataaaccaaatcataagcttgatttatgaaacgagcactgcattcatgtttggcaatatttgactggaggaggagttttaaagggggaaattaagactatagacacatacactaaatatgcataaaacgccaaaagtaccctggtttcctatccagttaaggcaacagtagcagaaaatgagtgttgtaatgagtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="89466" stop="88374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89166" g_stop="88674" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-M168-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M168-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89166" e_stop="88674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAGAGAACATGTAAAGTTGTTCAACTAATGAGCATATTTAGAAAAACTTAGTGGCTATCAATAGTTGGCAATATGAAAACTAAGATAGTGTGGTCACCTGTTGATCAATTTCTTCTTCAATAGGCATCTTGTCAGCTTCCTCTTGTAACAAGGCTTTCATTTGTGACTTGAGAATATATCCAGGAGGAAGTGCATGCCTGTAATGGCATTCTTTACCATTTGGACAGGCCCAGAACCAACCGTACTGCTTTTTCTCCACAGCATCCAAAAAGAATTTACATACCTGCATATAAACCAAATCATAAGCTTGATTTATGAAACGAGCACTGCATTCATGTTTGGCAATATTTGACTGGAGGAGGAGTTTTAAAGGGGGAAATTAAGACTATAGACACATACACTAAATATGCATAAAACGCCAAAAGTACCCTGGTTTCCTATCCAGTTAAGGCAACAGTAGCAGAAAATGAGTGTTGTAATGAGTCAAT</genome_strand>
        <mrna_strand>CAGAACAGAGAACATGTAAAGTTGTTCAACTAATGAGCATATTTAGAAAAACTTAGTGGCTATCAATAGTTGGCAATATGAAAACTAAGATAGTGTGGTCACCTGTTGATCAATTTCTTCTTCAATAGGCATCTTGTCAGCTTCCTCTTGTAACAAGGCTTTCATTTGTGACTTGAGAATATATCCAGGAGGAAGTGCATGCCTGTAATGGCATTCTTTACCATTTGGACAGGCCCAGAACCAACCGTACTGCTTTTTCTCCACAGCATCCAAAAAGAATTTACATACCTGCATATAAACCAAATCATAAGCTTGATTTATGAAACGAGCACTGCATTCATGTTTGGCAATATTTGACTGGAGGAGGAGTTTTAAAGGGGGAAATTAAGACTATAGACACATACACTAAATATGCATAAAACGCCAAAAGTACCCTGGTTTCCTATCCAGTTAAGGCAACAGTAGCAGAAAATGAGTGTTGTAATGAGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2597" PGL_stop="2002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2597" e_stop="2002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2597" e_stop="2002" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2597" stop="2002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTT</gDNA_template>
            <first_frame> F  S  V  T  L  W  L  I  A  Y  I  L  E  I  H  R  R  R  V  H  R  F  R  Q  K  T  P  A  E  *  L  R  E  L  R  Q  S  M  C  C  R  R  R  E  R  M  L  F  K  Y  Q  K  I  K  S  I  G  I  L  H  R  G  I  L  D  V  T  K  L  *  E  N  E  S  L  V  G  A  A  V  A  G  A  F  A  I  L  Y  L  S  F  *  F  S  L  S  H  L  E  S  L  L  L  L  S  T  S  S  S  V  L  K  L  Q  N  T  L  S  P  T  S  R  L  R  I  S  T  *  L  R  R  L  R  Y  R  R  N  S  T  L  L  S  E  L  K  I  L  T  I  R  S  E  F  T  T  G  K  E  A  L  S  P  Y  S  T  P  M  S  V  S  L  T  A  S  C  R  S  S  I  S  L  R  L  T  *  L  F  F  R  R  R  *  K  D  Q  T  S  C   </first_frame>
            <second_frame>  F  Q  L  H  Y  G  *  S  R  T  S  S  R  F  I  A  G  E  F  T  D  F  V  K  K  L  R  R  S  S  Y  G  N  S  D  K  A  C  A  A  V  A  G  N  V  C  C  S  S  T  K  R  S  N  L  S  V  S  S  T  G  E  F  S  T  L  R  S  F  E  K  T  K  A  S  S  E  L  L  L  P  V  R  L  L  Y  F  I  S  P  S  N  S  H  Y  R  T  W  N  H  C  C  C  C  L  P  R  L  P  S  *  S  S  K  I  H  Y  L  R  R  R  D  *  E  F  Q  L  N  F  V  V  S  G  I  A  G  I  R  R  Y  Y  P  S  *  K  S  *  Q  *  D  R  N  L  L  P  E  R  K  L  C  H  R  I  L  L  R  C  P  S  L  *  R  R  V  A  G  V  L  S  A  F  D  *  H  N  C  F  S  D  A  A  K  R  I  K  R  L  A  </second_frame>
            <third_frame>   F  S  Y  T  M  A  D  R  V  H  P  R  D  S  S  P  A  S  S  P  I  S  S  K  N  S  G  G  V  A  T  G  T  Q  T  K  H  V  L  P  S  P  G  T  Y  V  V  Q  V  P  K  D  Q  I  Y  R  Y  P  P  P  G  N  S  R  R  Y  E  A  L  R  K  R  K  P  R  R  S  C  C  C  R  C  V  C  Y  T  L  S  L  L  L  I  L  I  I  A  L  G  I  T  A  A  V  V  Y  L  V  F  R  P  E  A  P  K  Y  T  I  S  D  V  A  I  K  N  F  N  L  T  S  S  S  P  V  S  P  E  F  D  V  T  I  R  A  E  N  P  N  N  K  I  G  I  Y  Y  R  K  G  S  S  V  T  V  F  Y  S  D  V  R  L  S  N  G  E  L  P  E  F  Y  Q  P  S  T  N  I  T  V  F  Q  T  P  L  K  G  S  N  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2595" stop="2002"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSYTMADRVHPRDSSPASSPISSKNSGGVATGTQTKHVLPSPGTYVVQVPKDQIYRYPPPGNSRRYEALRKRKPRRSCCCRCVCYTLSLLLILIIALGITAAVVYLVFRPEAPKYTISDVAIKNFNLTSSSPVSPEFDVTIRAENPNNKIGIYYRKGSSVTVFYSDVRLSNGELPEFYQPSTNITVFQTPLKGSNVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7591" PGL_stop="6960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7591" e_stop="6960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="7591" e_stop="6960" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7591" stop="6960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTTTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</gDNA_template>
            <first_frame> F  V  K  D  F  K  Q  L  A  *  R  C  V  T  N  Y  V  R  D  I  P  R  T  *  N  N  *  S  *  H  *  P  T  K  W  Y  S  P  S  Q  P  F  Q  L  Y  Q  I  D  *  Y  *  R  F  F  Q  Q  I  Y  R  *  C  T  Y  H  G  I  *  L  R  E  S  *  L  G  F  S  R  C  F  T  *  C  I  S  W  S  V  A  S  G  A  G  Q  V  P  G  H  G  K  S  G  S  L  *  *  Q  I  *  R  W  P  S  *  *  S  L  R  E  I  G  I  F  K  C  G  *  *  Q  F  F  W  T  C  S  T  K  F  M  E  V  S  *  L  L  I  P  S  G  E  S  L  A  C  T  S  K  A  C  *  S  S  F  R  G  R  F  N  F  K  L  E  K  S  W  F  S  H  E  I  Y  H  Q  G  C  P  H  C  W  A  D  L  W  C  I  C  Y  S  F  V  D  I  N  N  L  P  Q  G  P  S  A   </first_frame>
            <second_frame>  L  L  K  I  S  N  N  S  L  E  G  V  L  P  T  M  L  G  T  Y  L  E  L  K  T  I  D  L  S  I  N  Q  L  S  G  T  L  L  P  S  L  F  N  S  T  K  L  T  D  I  N  V  S  F  N  K  F  T  G  S  V  P  I  M  A  F  N  S  E  N  L  S  L  V  S  L  D  V  S  H  N  A  L  A  G  P  L  P  P  G  L  D  K  F  P  D  M  V  N  L  D  L  S  D  N  K  F  E  G  G  L  P  N  D  L  S  E  K  L  E  F  L  N  V  A  N  N  N  F  S  G  P  V  P  Q  N  L  W  R  F  P  D  S  S  F  H  P  G  N  P  L  L  V  L  P  K  H  A  E  A  P  S  E  G  D  S  T  L  S  L  R  S  H  G  S  R  M  K  S  T  I  R  A  A  L  I  A  G  L  I  C  G  V  S  V  I  A  L  L  T  L  I  I  Y  H  K  A  H  Q  R  </second_frame>
            <third_frame>   C  *  R  F  Q  T  T  R  L  K  V  C  Y  Q  L  C  *  G  H  T  S  N  L  K  Q  L  I  L  A  L  T  N  *  V  V  L  S  F  P  A  F  S  T  L  P  N  *  L  I  L  T  F  L  S  T  N  L  P  V  V  Y  L  S  W  H  L  T  Q  R  I  L  A  W  F  L  *  M  F  H  I  M  H  *  L  V  R  C  L  R  G  W  T  S  S  R  T  W  *  I  W  I  S  L  I  T  N  L  K  V  A  F  L  M  I  S  Q  R  N  W  N  F  *  M  W  L  I  T  I  F  L  D  L  F  H  K  I  Y  G  G  F  L  T  P  H  S  I  R  G  I  P  C  L  Y  F  Q  S  M  L  K  L  L  Q  R  E  I  Q  L  *  A  *  E  V  M  V  L  A  *  N  L  P  S  G  L  P  S  L  L  G  *  S  V  V  Y  L  L  *  L  C  *  H  *  *  S  T  T  R  P  I  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7590" stop="6961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKISNNSLEGVLPTMLGTYLELKTIDLSINQLSGTLLPSLFNSTKLTDINVSFNKFTGSVPIMAFNSENLSLVSLDVSHNALAGPLPPGLDKFPDMVNLDLSDNKFEGGLPNDLSEKLEFLNVANNNFSGPVPQNLWRFPDSSFHPGNPLLVLPKHAEAPSEGDSTLSLRSHGSRMKSTIRAALIAGLICGVSVIALLTLIIYHKAHQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="52041" PGL_stop="47638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52041" e_stop="51824"/>
            <exon e_start="49696" e_stop="49509"/>
            <exon e_start="47742" e_stop="47638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.789" acc_prob="1.000" e_score="0.977"/>
          <exon-intron don_prob="0.934" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="52041" e_stop="51824" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.789" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51823" i_stop="49697" i_length="2127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49696" e_stop="49509" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.990">
            <gDNA_intron_boundary i_start="49508" i_stop="47743" i_length="1766"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="47742" e_stop="47638" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52041" stop="51824"/>
              <exon start="49696" stop="49509"/>
              <exon start="47742" stop="47645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M869-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52019" stop="51824"/>
              <exon start="49696" stop="49509"/>
              <exon start="47742" stop="47638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTG : ATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAG : ATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCTGGTAAAT</gDNA_template>
            <first_frame> V  K  G  L  F  L  F  S  L  S  R  V  *  G  A  T  L  Q  Y  F  V  Y  I  Y  S  L  Y  Y  V  *  R  E  R  V  E  G  G  E  R  N  G  L  V  S  M  F  W  S  I  E  A  D  L  K  E  E  E  E  E  E  E  E  R  F  V  *  F  G  S  T  R  L  * :   *  V  E  G  K  D  S  V  R  F  K  G  V  C  *  G  W  R  V  W  S  N  W  S  Q  D  F  *  I  S  *  I  S  S  C  N  K  K  L  S  R  *  L  S  S  W  R  G  R  I  R  K  S  I  *  R  A  A  R  F  Q  S   : D  C  C  H  Q  A  T  R  S  *  W  I  A  R  E  Q  G  I  S  C  *  S  A  D  A  K  S  V  T  P  S  *  P  G  K  </first_frame>
            <second_frame>  *  K  G  F  F  F  F  P  S  L  V  C  R  V  P  L  F  N  T  L  C  I  Y  I  V  Y  I  M  Y  R  E  R  E  *  K  E  V  R  E  M  G  W  F  P  C  S  G  A  L  K  Q  T  S  K  K  R  K  K  K  K  K  K  D  S  S  N  S  V  Q  L  G  C   : D  K  L  K  A  K  T  L  L  G  S  K  E  Y  V  K  D  G  E  S  G  Q  I  G  A  K  I  F  K  F  R  E  L  A  V  A  T  R  N  F  R  G  D  C  L  L  G  E  G  G  F  G  R  V  Y  K  G  R  L  D  S  N  Q  :  I  V  A  I  K  Q  L  D  R  N  G  L  Q  G  N  R  E  F  L  V  E  V  L  M  L  S  L  L  H  H  P  N  L  V  N </second_frame>
            <third_frame>   E  R  A  F  S  F  F  P  L  S  C  V  G  C  H  S  S  I  L  C  V  Y  I  *  S  I  L  C  I  E  R  E  S  R  R  R  *  E  K  W  V  G  F  H  V  L  E  H  *  S  R  P  Q  R  R  G  R  R  R  R  R  K  I  R  L  I  R  F  N  S  V  V  :  I  S  *  R  Q  R  L  C  *  V  Q  R  S  M  L  R  M  A  S  L  V  K  L  E  P  R  F  L  N  F  V  N  *  Q  L  Q  Q  E  T  F  E  V  I  V  F  L  E  R  E  D  S  E  E  Y  I  K  G  G  S  I  P  I  R :   L  L  P  S  S  N  S  I  V  M  D  C  K  G  T  G  N  F  L  L  K  C  *  C  *  V  C  Y  T  I  L  T  W  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51938" stop="51824"/>
                    <exon start="49696" stop="49509"/>
                    <exon start="47742" stop="47638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEVREMGWFPCSGALKQTSKKRKKKKKKDSSNSVQLGCDKLKAKTLLGSKEYVKDGESGQIGAKIFKFRELAVATRNFRGDCLLGEGGFGRVYKGRLDSNQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="59444" PGL_stop="65048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59444" e_stop="59656"/>
            <exon e_start="61455" e_stop="61596"/>
            <exon e_start="61699" e_stop="61744"/>
            <exon e_start="62187" e_stop="62246"/>
            <exon e_start="62908" e_stop="62944"/>
            <exon e_start="63551" e_stop="63630"/>
            <exon e_start="63734" e_stop="63825"/>
            <exon e_start="64360" e_stop="64420"/>
            <exon e_start="64840" e_stop="65048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59444" e_stop="59656" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61455" e_stop="61596" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.874">
            <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61699" e_stop="61744" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62187" e_stop="62246" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.799">
            <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62908" e_stop="62944" e_length="37"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.322">
            <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63551" e_stop="63630" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.953">
            <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63734" e_stop="63825" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="63826" i_stop="64359" i_length="534"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64360" e_stop="64420" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64421" i_stop="64839" i_length="419"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="64840" e_stop="65048" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59444" stop="59656"/>
              <exon start="61455" stop="61596"/>
              <exon start="61699" stop="61744"/>
              <exon start="62187" stop="62246"/>
              <exon start="62908" stop="62944"/>
              <exon start="63551" stop="63630"/>
              <exon start="63734" stop="63800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7428-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59445" stop="59656"/>
              <exon start="61455" stop="61596"/>
              <exon start="61699" stop="61744"/>
              <exon start="62187" stop="62246"/>
              <exon start="62908" stop="62944"/>
              <exon start="63551" stop="63630"/>
              <exon start="63734" stop="63825"/>
              <exon start="64360" stop="64420"/>
              <exon start="64840" stop="65048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAG : AAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGG : ATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG : GATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG : GCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAG : AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGG : GCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTG : GCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAG : GACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAACAAC</gDNA_template>
            <first_frame> E  S  S  V  L  H  S  L  R  Q  W  R  F  L  S  I  L  V  L  L  W  Q  L  A  E  V  F  V  K  P  H  F  T  M  L  I  *  Q  Q  T  R  L  V  S  T  A  I  S  A  *  P  P  I  F  *  P  F  L  P  P  T  G  P  P  L  L  S  T  A  P  E  :  K  L  R  L  Q  W  *  V  R  T  P  S  M  C  W  T  M  F  K  Y  L  I  *  M  D  K  E  Y  L  F  R  I  C  G  K  I  G  R  Q  L  L  P  L  L  V  I  L   : D  A  S  F  V  A  *  E  L  I  I  L  Q  L  R  R :   I  R  W  M  Q  Q  E  S  H  L  F  *  L  D  L  V  V  L  I  R :   P  E  N  S  T  S  K  Q  S  L  K  E  :  R  F  M  L  I  Q  A  I  G  L  M  R  L  *  D  L  C  L  A  L  Q  P  H  L  L  P  G :   R  V  *  K  *  Y  R  H  T  W  K  A  I  D  K  I  G  S  F  L  S  K  R  T  P  G  H  E  V  A   : G  D  K  E  E  L  L  L  Q  V  L  V  K  I  T  L  H  T  F  T  R :   T  K  K  Q  V  M  I  Q  I  *  K  K  S  *  M  L  A  V  Y  K  A  K  F  N  Q  Y  S  L  Y  I  M  C  I  Y  R  Q  F  E  E  I  R  I  S  I  D  T  N  *  Y  M  N  N  P  H  F  W  F  K  *  A  I  L  E  L  L  F  H  E  Q  </first_frame>
            <second_frame>  N  P  L  F  Y  T  L  Y  V  N  G  D  F  S  Q  F  W  S  Y  C  G  S  *  Q  K  Y  S  S  N  P  T  S  Q  C  *  F  D  N  K  P  V  *  F  Q  L  Q  F  Q  L  N  P  Q  F  S  S  H  F  C  L  P  Q  V  L  L  C  Y  L  Q  L  Q  R :   N  *  D  S  S  G  E  *  G  H  H  Q  C  V  G  R  C  S  S  I  *  S  E  W  T  R  S  T  Y  F  G  F  V  E  R  *  E  G  S  C  C  L  C  S  S  F  W  :  M  R  P  L  S  H  K  S  *  L  S  C  S  *  E   : G  *  D  G  C  S  R  S  R  T  C  F  D  W  T  W  *  C  *  S   : G  Q  K  I  L  R  A  N  K  V  *  R  R :   G  L  C  *  S  K  L  *  V  L  *  G  S  E  I  C  V  W  H  Y  N  H  I  Y  S  R   : G  G  S  E  N  N  T  G  I  H  G  R  L  *  T  R  L  G  A  F  F  R  K  G  H  Q  D  T  R  W  L  :  A  T  R  R  N  Y  C  C  R  S  W  *  K  *  H  Y  I  H  S  Q   : G  Q  R  S  R  *  *  S  R  Y  K  R  N  L  E  C  L  L  C  T  R  L  N  L  I  N  T  V  Y  I  L  C  V  Y  T  D  N  L  K  R  Y  V  S  R  *  T  Q  T  S  T  *  T  I  H  T  F  G  S  N  K  Q  Y  *  S  Y  Y  S  T  N  N </second_frame>
            <third_frame>   I  L  C  F  T  L  F  T  S  M  A  I  S  L  N  S  G  L  T  V  A  V  S  R  S  I  R  Q  T  P  L  H  N  V  N  L  T  T  N  P  F  S  F  N  C  N  F  S  L  T  P  N  F  L  A  I  S  A  S  H  R  S  S  S  V  I  Y  S  S  R   : E  T  E  T  P  V  V  S  E  D  T  I  N  V  L  D  D  V  Q  V  F  D  L  N  G  Q  G  V  P  I  S  D  L  W  K  D  R  K  A  V  V  A  F  A  R  H  F  G :   C  V  L  C  R  I  R  A  D  Y  L  A  A  E  K  :  D  K  M  D  A  A  G  V  A  L  V  L  I  G  P  G  S  V  D  Q  :  A  R  K  F  Y  E  Q  T  K  F  K  G   : E  V  Y  A  D  P  S  Y  R  S  Y  E  A  L  R  F  V  S  G  I  T  T  T  F  T  P  G  :  A  G  L  K  I  I  Q  A  Y  M  E  G  Y  R  Q  D  W  E  L  S  F  E  K  D  T  R  T  R  G  G  W :   R  Q  G  G  I  I  V  A  G  P  G  K  N  N  I  T  Y  I  H  K  :  D  K  E  A  G  D  D  P  D  I  K  E  I  L  N  A  C  C  V  Q  G  *  I  *  S  I  Q  S  I  Y  Y  V  Y  I  Q  T  I  *  R  D  T  Y  L  D  R  H  K  L  V  H  E  Q  S  T  L  L  V  Q  I  S  N  T  R  V  I  I  P  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59446" stop="59656"/>
                    <exon start="61455" stop="61596"/>
                    <exon start="61699" stop="61744"/>
                    <exon start="62187" stop="62246"/>
                    <exon start="62908" stop="62944"/>
                    <exon start="63551" stop="63630"/>
                    <exon start="63734" stop="63825"/>
                    <exon start="64360" stop="64420"/>
                    <exon start="64840" stop="64905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCFTLFTSMAISLNSGLTVAVSRSIRQTPLHNVNLTTNPFSFNCNFSLTPNFLAISASHRSSSVIYSSRETETPVVSEDTINVLDDVQVFDLNGQGVPISDLWKDRKAVVAFARHFGCVLCRIRADYLAAEKDKMDAAGVALVLIGPGSVDQARKFYEQTKFKGEVYADPSYRSYEALRFVSGITTTFTPGAGLKIIQAYMEGYRQDWELSFEKDTRTRGGWRQGGIIVAGPGKNNITYIHKDKEAGDDPDIKEILNACCVQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="85336" PGL_stop="89003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85336" e_stop="85630"/>
            <exon e_start="86826" e_stop="86910"/>
            <exon e_start="87665" e_stop="87805"/>
            <exon e_start="87918" e_stop="88015"/>
            <exon e_start="88879" e_stop="89003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85336" e_stop="85630" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85631" i_stop="86825" i_length="1195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86826" e_stop="86910" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86911" i_stop="87664" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87665" e_stop="87805" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.852" acc_prob="0.973">
            <gDNA_intron_boundary i_start="87806" i_stop="87917" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87918" e_stop="88015" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.762" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88016" i_stop="88878" i_length="863"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88879" e_stop="89003" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85336" stop="85630"/>
              <exon start="86826" stop="86910"/>
              <exon start="87665" stop="87805"/>
              <exon start="87918" stop="88015"/>
              <exon start="88879" stop="89003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7244-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAG : AAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAG : GTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAG : ATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATT : GTATGTAAATTCTTTTTGGATGCTGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAAT</gDNA_template>
            <first_frame> E  N  P  I  S  A  S  G  H  T  L  N  L  S  S  *  G  F  Q  S  P  E  K  K  F  D  F  P  T  N  L  S  R  *  L  R  I  W  M  R  I  Q  D  A  A  K  A  I  *  S  R  Y  C  K  E  A  E  G  S  *  R  Q  D  V  R  S  *  E  *  E  Q  V  E  E  C  S  E  I  C  S  V  F  T  A  K  C  C  A  *  S  *  S  *  E  T  *  R  Q   : E  K  E  G  R  R  E  S  *  R  E  R  A  *  R  I  V  Q  S  R  Y  *  P  T  *  S  A  S  R :   C  *  S  K  I  Y  F  M  *  V  L  *  G  G  A  M  C  *  G  F  *  V  Q  V  L  S  R  S  E  C  S  A  K  R  R  E  D  *  Y  F  Q  R  *  A  *  *  R :   W  K  G  N  N  G  R  L  G  S  R  D  T  G  E  G  C  G  V  K  K  S  R  V  *  Q  E  Q  T  N  *  H   : C  M  *  I  L  F  G  C  C  G  E  K  A  V  R  L  V  L  G  L  S  K  W  *  R  M  P  L  Q  A  C  T  S  S  W  I  Y  S  Q  V  T  N </first_frame>
            <second_frame>  R  T  Q  S  P  P  P  A  T  L  L  I  Y  R  P  R  V  F  S  R  R  K  R  N  S  I  F  R  R  I  Y  R  G  D  *  G  F  G  *  E  Y  K  M  P  P  K  Q  S  K  A  D  I  A  K  K  Q  K  V  V  E  D  K  T  F  G  L  K  N  K  N  K  S  K  N  V  Q  K  Y  V  Q  S  L  Q  Q  N  V  V  P  K  A  D  P  K  K  L  D  A  K  :  K  K  K  E  E  E  K  A  R  E  K  E  L  S  E  L  F  K  V  A  I  S  Q  P  K  V  P  L   : G  V  D  P  K  S  I  L  C  E  F  F  K  A  G  Q  C  V  K  G  F  K  C  K  F  S  H  D  L  N  V  Q  R  K  G  E  K  I  D  I  F  S  D  K  R  D  E   : D  G  K  E  T  M  D  D  W  D  Q  E  T  L  E  K  V  V  A  S  K  S  Q  E  Y  N  K  N  K  P  T  D  I  :  V  C  K  F  F  L  D  A  V  E  K  K  Q  Y  G  W  F  W  A  C  P  N  G  K  E  C  H  Y  R  H  A  L  P  P  G  Y  I  L  K  S  Q   </second_frame>
            <third_frame>   E  P  N  L  R  L  R  P  H  S  *  F  I  V  L  G  F  S  V  A  G  K  E  I  R  F  S  D  E  S  I  E  V  I  E  D  L  D  E  N  T  R  C  R  Q  S  N  L  K  P  I  L  Q  R  S  R  R  *  L  K  T  R  R  S  V  L  R  I  R  T  S  R  R  M  F  R  N  M  F  S  L  Y  S  K  M  L  C  L  K  L  I  L  R  N  L  T  P  R :   K  R  R  K  K  R  K  L  E  R  K  S  L  A  N  C  S  K  S  L  L  A  N  L  K  C  L  *  :  V  L  I  Q  N  L  F  Y  V  S  S  L  R  R  G  N  V  L  R  V  L  S  A  S  S  L  T  I  *  M  F  S  E  K  E  R  R  L  I  F  S  A  I  S  V  M  K  :  M  E  R  K  Q  W  T  I  G  I  K  R  H  W  R  R  L  W  R  Q  K  V  K  S  I  T  R  T  N  Q  L  T  L :   Y  V  N  S  F  W  M  L  W  R  K  S  S  T  V  G  S  G  P  V  Q  M  V  K  N  A  I  T  G  M  H  F  L  L  D  I  F  S  S  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85454" stop="85630"/>
                    <exon start="86826" stop="86910"/>
                    <exon start="87665" stop="87805"/>
                    <exon start="87918" stop="88015"/>
                    <exon start="88879" stop="89001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYKMPPKQSKADIAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLQQNVVPKADPKKLDAKKKKEEEKAREKELSELFKVAISQPKVPLGVDPKSILCEFFKAGQCVKGFKCKFSHDLNVQRKGEKIDIFSDKRDEDGKETMDDWDQETLEKVVASKSQEYNKNKPTDIVCKFFLDAVEKKQYGWFWACPNGKECHYRHALPPGYILKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87009" e_stop="87486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87009" e_stop="87486" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87009" stop="87486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M168-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGTTGGATTGAAACAATTGGGAATATAGTGTAGGAAGACTTCGGGGCAATTATCTGCTTTCTTCTATATCAAACTGGGTCTATTGAAGAATTACAAACTGGACCTTAAATCTTTTGCCAGTTTTTGTAAAATTGATAAACTTTTGATATTTTATTATGGAAATTCAAAATATATCTTAATAGTAGCTTGTTAATTTATTTCAAGAGACCCTTTTCATTGTTCATAGTTCATTATCATCCCCTTATCAGTAGTGCACCAAGGGTGTGACCTAGTGGTCAATTAAGTATGAATCATGAGTCTTAGACAGAAACACTAGGTGATTTTCTTCCATGTGTCCTAGCCTCTTAGGCTTGGTGGATAGAGGAGGTATCCTGTCTTTCCCCTTTCCAGAAATTCATAGCATTATTTTCTGTTCTTTATTGATAAATTATTCATTAGAACAGTTATTAGAAATGTGGAACTGGTTGAGGTAGGCG</gDNA_template>
            <first_frame> L  V  G  L  K  Q  L  G  I  *  C  R  K  T  S  G  Q  L  S  A  F  F  Y  I  K  L  G  L  L  K  N  Y  K  L  D  L  K  S  F  A  S  F  C  K  I  D  K  L  L  I  F  Y  Y  G  N  S  K  Y  I  L  I  V  A  C  *  F  I  S  R  D  P  F  H  C  S  *  F  I  I  I  P  L  S  V  V  H  Q  G  C  D  L  V  V  N  *  V  *  I  M  S  L  R  Q  K  H  *  V  I  F  F  H  V  S  *  P  L  R  L  G  G  *  R  R  Y  P  V  F  P  L  S  R  N  S  *  H  Y  F  L  F  F  I  D  K  L  F  I  R  T  V  I  R  N  V  E  L  V  E  V  G  </first_frame>
            <second_frame>  *  L  D  *  N  N  W  E  Y  S  V  G  R  L  R  G  N  Y  L  L  S  S  I  S  N  W  V  Y  *  R  I  T  N  W  T  L  N  L  L  P  V  F  V  K  L  I  N  F  *  Y  F  I  M  E  I  Q  N  I  S  *  *  *  L  V  N  L  F  Q  E  T  L  F  I  V  H  S  S  L  S  S  P  Y  Q  *  C  T  K  G  V  T  *  W  S  I  K  Y  E  S  *  V  L  D  R  N  T  R  *  F  S  S  M  C  P  S  L  L  G  L  V  D  R  G  G  I  L  S  F  P  F  P  E  I  H  S  I  I  F  C  S  L  L  I  N  Y  S  L  E  Q  L  L  E  M  W  N  W  L  R  *  A </second_frame>
            <third_frame>   S  W  I  E  T  I  G  N  I  V  *  E  D  F  G  A  I  I  C  F  L  L  Y  Q  T  G  S  I  E  E  L  Q  T  G  P  *  I  F  C  Q  F  L  *  N  *  *  T  F  D  I  L  L  W  K  F  K  I  Y  L  N  S  S  L  L  I  Y  F  K  R  P  F  S  L  F  I  V  H  Y  H  P  L  I  S  S  A  P  R  V  *  P  S  G  Q  L  S  M  N  H  E  S  *  T  E  T  L  G  D  F  L  P  C  V  L  A  S  *  A  W  W  I  E  E  V  S  C  L  S  P  F  Q  K  F  I  A  L  F  S  V  L  Y  *  *  I  I  H  *  N  S  Y  *  K  C  G  T  G  *  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0179M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="89166" PGL_stop="88674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89166" e_stop="88674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89166" e_stop="88674" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89166" stop="88674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M168-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACAGAGAACATGTAAAGTTGTTCAACTAATGAGCATATTTAGAAAAACTTAGTGGCTATCAATAGTTGGCAATATGAAAACTAAGATAGTGTGGTCACCTGTTGATCAATTTCTTCTTCAATAGGCATCTTGTCAGCTTCCTCTTGTAACAAGGCTTTCATTTGTGACTTGAGAATATATCCAGGAGGAAGTGCATGCCTGTAATGGCATTCTTTACCATTTGGACAGGCCCAGAACCAACCGTACTGCTTTTTCTCCACAGCATCCAAAAAGAATTTACATACCTGCATATAAACCAAATCATAAGCTTGATTTATGAAACGAGCACTGCATTCATGTTTGGCAATATTTGACTGGAGGAGGAGTTTTAAAGGGGGAAATTAAGACTATAGACACATACACTAAATATGCATAAAACGCCAAAAGTACCCTGGTTTCCTATCCAGTTAAGGCAACAGTAGCAGAAAATGAGTGTTGTAATGAGTCAAT</gDNA_template>
            <first_frame> Q  N  R  E  H  V  K  L  F  N  *  *  A  Y  L  E  K  L  S  G  Y  Q  *  L  A  I  *  K  L  R  *  C  G  H  L  L  I  N  F  F  F  N  R  H  L  V  S  F  L  L  *  Q  G  F  H  L  *  L  E  N  I  S  R  R  K  C  M  P  V  M  A  F  F  T  I  W  T  G  P  E  P  T  V  L  L  F  L  H  S  I  Q  K  E  F  T  Y  L  H  I  N  Q  I  I  S  L  I  Y  E  T  S  T  A  F  M  F  G  N  I  *  L  E  E  E  F  *  R  G  K  L  R  L  *  T  H  T  L  N  M  H  K  T  P  K  V  P  W  F  P  I  Q  L  R  Q  Q  *  Q  K  M  S  V  V  M  S  Q  </first_frame>
            <second_frame>  R  T  E  N  M  *  S  C  S  T  N  E  H  I  *  K  N  L  V  A  I  N  S  W  Q  Y  E  N  *  D  S  V  V  T  C  *  S  I  S  S  S  I  G  I  L  S  A  S  S  C  N  K  A  F  I  C  D  L  R  I  Y  P  G  G  S  A  C  L  *  W  H  S  L  P  F  G  Q  A  Q  N  Q  P  Y  C  F  F  S  T  A  S  K  K  N  L  H  T  C  I  *  T  K  S  *  A  *  F  M  K  R  A  L  H  S  C  L  A  I  F  D  W  R  R  S  F  K  G  G  N  *  D  Y  R  H  I  H  *  I  C  I  K  R  Q  K  Y  P  G  F  L  S  S  *  G  N  S  S  R  K  *  V  L  *  *  V  N </second_frame>
            <third_frame>   E  Q  R  T  C  K  V  V  Q  L  M  S  I  F  R  K  T  *  W  L  S  I  V  G  N  M  K  T  K  I  V  W  S  P  V  D  Q  F  L  L  Q  *  A  S  C  Q  L  P  L  V  T  R  L  S  F  V  T  *  E  Y  I  Q  E  E  V  H  A  C  N  G  I  L  Y  H  L  D  R  P  R  T  N  R  T  A  F  S  P  Q  H  P  K  R  I  Y  I  P  A  Y  K  P  N  H  K  L  D  L  *  N  E  H  C  I  H  V  W  Q  Y  L  T  G  G  G  V  L  K  G  E  I  K  T  I  D  T  Y  T  K  Y  A  *  N  A  K  S  T  L  V  S  Y  P  V  K  A  T  V  A  E  N  E  C  C  N  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0179M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 19304 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2144 bytes was the average size of a spliced alignment
$ 11944 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1990 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:07:19
-->
