<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:06:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320810" ref_strand="+" ref_description="SGN-U320810        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT2G27080.1 | Symbol: None | harpin-induced protein-related / HIN1-related / harpin-responsive protein-related, contains 1 transmembrane domain; similar to hin1 homolog (GI:13122296) (Arabidopsis thaliana); similar to hin1 (GI:22830759) (Nicotiana tabacum) | chr2:11573366-11574582 FORWARD | Aliases: T20P8.13, T20P8_13 (evalue: 1e-51, score=199) genbank/nr: Harpin-induced(evalue: 1e-49, score=199)">
      <seq>ccttttctgattttcagttacactatggctgatcgcgtacatcctcgagattcatcgccggcgagttcaccgatttcgtcaaaaaactccggcggagtagctacgggaactcagacaaagcatgtgctgccgtcgccgggaacgtatgttgttcaagtaccaaaagatcaaatctatcggtatcctccaccggggaattctcgacgttacgaagctttgagaaaacgaaagcctcgtcggagctgctgttgccggtgcgtttgctatactttatctctccttctaattctcattatcgcacttggaatcactgctgctgttgtctacctcgtcttccgtcctgaagctccaaaatacactatctccgacgtcgcgattaagaatttcaacttaacttcgtcgtctccggtatcgccggaattcgacgttactatccgagctgaaaatcctaacaataagatcggaatttactaccggaaaggaagctctgtcaccgtattctactccgatgtccgtctctctaacggcgagttgccggagttctatcagccttcgactaacataactgtttttcagacgccgctaaaaggatcaaacgtcttgcttggtaacgccgttaaaacggcgttaaggaatgaacagatgaaaggaaaagttccgtttaaggttaacattaaagttcccgttaaagttaaagttggcgccgttaagacgtgggaaatcaccgttaaggttaagtgtgatgtaacggtgaatactttaacggccaaatcaaaaataatttctaaagattgtaaatatagtgttagcctttggtagtaaatagtgatatatctaggattttattttttttccttttccttctattggtagtaaaaatagtttacataataaagtgaaattttaataatatacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="2907" stop="1384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2607" g_stop="1682" g_length="926"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="926" r_length="926" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U320810" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2607" e_stop="1682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCTGATTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTTGGTAACGCCGTTAAAACGGCGTTAAGGAATGAACAGATGAAAGGAAAAGTTCCGTTTAAGGTTAACATTAAAGTTCCCGTTAAAGTTAAAGTTGGCGCCGTTAAGACGTGGGAAATCACCGTTAAGGTTAAGTGTGATGTAACGGTGAATACTTTAACGGCCAAATCAAAAATAATTTCTAAAGATTGTAAATATAGTGTTAGCCTTTGGTAGTAAATAGTGATATATCTAGGATTTTATTTTTTTTCCTTTTCCTTCTATTGGTAGTAAAAATAGTTTACATAATAAAGTGAAATTTTTATAATATACTAAAATACACG</genome_strand>
        <mrna_strand>CCTTTTCTGATTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTTGGTAACGCCGTTAAAACGGCGTTAAGGAATGAACAGATGAAAGGAAAAGTTCCGTTTAAGGTTAACATTAAAGTTCCCGTTAAAGTTAAAGTTGGCGCCGTTAAGACGTGGGAAATCACCGTTAAGGTTAAGTGTGATGTAACGGTGAATACTTTAACGGCCAAATCAAAAATAATTTCTAAAGATTGTAAATATAGTGTTAGCCTTTGGTAGTAAATAGTGATATATCTAGGATTTTATTTTTTTTCCTTTTCCTTCTATTGGTAGTAAAAATAGTTTACATAATAAAGTGAAATTTTAATAATATACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340850" ref_strand="+" ref_description="SGN-U340850        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G27060.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:11558405-11561853 FORWARD | Aliases: T20P8.11, T20P8_11 (evalue: 2e-59, score=226) genbank/nr: Protein(evalue: 2e-61, score=239)">
      <seq>gggcaaggagcatgagcggcttctcatatcgaattacaccgatgccccatgtttagctctttatcttcttcgaaaagatgcagaacgctgtaagctacatcctttatctctagatgatcaactcaagatctctgtagatgttgctcgttgtctaaactaccttcaccatgaaagtgccatacctcatggcaacctgaaatccacaaatgtacttatagacacgtctaacgtgaatgccctacttaccgactatagtcttcatagattgatgacatctgctggaacagctgagcaggttctaaatgccggtgtactcggttatcgtcctcctgaattcgcgagtacaagtaaaccttgtccgtctttgaaaagtgacgtctacgcttttggtgttatcttgttggaacttttgacaggaagaagttctgcagaaattgttcctgggaactcagaggtgctggatttaaccgaatgggcgagattgttggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="6691" stop="4814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6394" g_stop="6318" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6317" i_stop="5527" i_length="791">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5526" g_stop="5114" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="490" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U340850" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6394" e_stop="6318"/>
          <exon e_start="5526" e_stop="5114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAGGAGCATGAGCGGCTTCTCATATCGAATTACACCGATGCCCCATGTTTAGCTCTTTATCTTCTTCGAAAAGGTCAGTCTCCCCTGTCTACCTATAGAGTATATCACCTGCATCTATTTCTGTAGCTTTTCTGATTTTTATTTGGTGCTGAAATCGTGATCCAGTTTTACCAAAGAAAATTAGTAGTACTCCTTCAATGAAATCAAACATAATGGACCGTGAATGCACAACTTTGAATATGTATATTGAAATTGTAGTTGTCAAGATTGCTCATACCTGATATGCTGAAGTTTAATCACCATCTTGCCACTTGATATCCATTTCGGTGCCTCAAGTGTACTTTTCTTCGAAAAGATTTTCTAGCTTGCTGGTTGAATATGTATCTGAGACTATTAAGTATTAATACACATTTCACATAGCAACTTTCATGGAATTTATAACTGGAGCTATCTTCCAAAATCTGAACTTTTTCAATTCATATATATATTAGCAATGTTAGAATTACACATAGCAGAAAAGATACACACCTTTTTTTTGCTTTCATGATAATACTAAAAGGTAAAACAGTTTTGCCTTGGTTAATTGTGGCTTGATGGTGATAGTGGGAGAGTGAAAAGTCGAAAAGAGGATTCCTCTCTTCTTTTTCTCATTCAAAACTGTGCATGAGAATTTTATCTCACGTGGCTCGTTTTGTATGGATTACTTCGGTTGGGCTTGGTTGATGTCGTTTTGATAAGGGCATCTCCTGGTGCACTAATTAGAGACTGCTACTTTGAAGCCTACTTACTGCATATAGCACTGTACTTTGCTTTCTAGTTTTGAGTGGTGATATGGATGTCGGTTTCATTTTTTGATGTATGCAGATGCAGAACGCTGTAAGCTACATCCTTTATCTCTAGATGATCGACTCAAGATCTCTGTAGATGTTGCTCGTTGTCTAAACTACCTTCACCATGAAAGTGCCATACCTCATGGCAACCTGAAATCCACAAATGTACTTATAGACACGTCTAACGTGAATGCCCTACTTACCGACTATAGTCTTCATAGATTGATGACATCTGCTGGAACAGCTGAGCAGGTTCTAAATGCCGGTGTACTCGGTTATCGTCCTCCTGAATTCGCGAGTACAAGTAAACCTTGTCCGTCTTTGAAAAGTGACGTCTACGCTTTTGGTGTTATCTTGTTGGAACTTTTGACAGGAAGAAGTTCTGCAGAAATTGTTCCTGGGAACTCAGAGGTGCTGGATTTAACCGAATGGGCGAGATTGTTGGCC</genome_strand>
        <mrna_strand>GGGCAAGGAGCATGAGCGGCTTCTCATATCGAATTACACCGATGCCCCATGTTTAGCTCTTTATCTTCTTCGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGAACGCTGTAAGCTACATCCTTTATCTCTAGATGATCAACTCAAGATCTCTGTAGATGTTGCTCGTTGTCTAAACTACCTTCACCATGAAAGTGCCATACCTCATGGCAACCTGAAATCCACAAATGTACTTATAGACACGTCTAACGTGAATGCCCTACTTACCGACTATAGTCTTCATAGATTGATGACATCTGCTGGAACAGCTGAGCAGGTTCTAAATGCCGGTGTACTCGGTTATCGTCCTCCTGAATTCGCGAGTACAAGTAAACCTTGTCCGTCTTTGAAAAGTGACGTCTACGCTTTTGGTGTTATCTTGTTGGAACTTTTGACAGGAAGAAGTTCTGCAGAAATTGTTCCTGGGAACTCAGAGGTGCTGGATTTAACCGAATGGGCGAGATTGTTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331093" ref_strand="+" ref_description="SGN-U331093        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G27060.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:11558405-11561853 FORWARD | Aliases: T20P8.11, T20P8_11 (evalue: 3e-114, score=408) genbank/nr: Protein(evalue: 6e-117, score=423)">
      <seq>ataataacctggacggagagctatttcctcacgatggaatgccatattttgacagtttagaggtgtttgatgcaagtaacaatcagcttactggtactattccatccttcaattttgtggtctcccttcgaattcttaggctagggaacaatcagttgtctggatcactccccgaagctcttctagaggatagctcaatgattttatcagaattggacctaagccagaatcagcttgcaggtcccatcggaggtataagtgctgtgaatctcaagcttctaaatttatcatataaccagctgtcaggccccttgcctttcaaggttgggcgctgtgcaatcatagacctgagcaacaatcggctaactggaaatgtgtcccggatccaaggttggggaaattatgttgaagttattgtgttaagctcaaatgcattgacaggaaccttccccaaccaaacttcccagttcttgaggcttactttgttaaagatttcaaacaactcgcttgaaggtgtgttaccaactatgttagggacatacctcgaacttaaaacaattgatcttagcattaaccaactaagtggtactctccttcccagccttttcaactctaccaaattgactgatattaacgtttctttcaacaaatttaccggtagtgtacctatcatggcatttaactcagagaatcttagcttggtttctctagatgtttcacataatgcattagctggtccgttgcctccggggctggacaagttcccggacatggtaaatctggatctctctgataacaaatttgaaggtggccttcctaatgatctctcagagaaattggaatttttaaatgtggctaataacaatttttctggacctgttccacaaaatttatggaggtttcctgactcctcattccatccggggaatcccttgcttgtacttccaaagcatgctgaagctccttcagagggagattcaactntaagcttgagaagtcatggttctcgcatgaaatctaccatcagggctgccctcattgctgggctgatctgtggtgtatctgttatagctttgttgacattaataatctaccacaaggcccatcagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="9093" stop="6660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8793" g_stop="8554" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8553" i_stop="7833" i_length="721">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.139" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7832" g_stop="6960" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="1113" r_length="873" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U331093" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1113</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8793" e_stop="8554"/>
          <exon e_start="7832" e_stop="6960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAACCTGGACGGAGAGCTATTTCCTCACGATGGAATGCCATATTTTGACAGTTTAGAGGTGTTTGATGCAAGTAACAATCAGCTTACTGGTACTATTCCATCCTTCAATTTTGTGGTCTCCCTTCGAATTCTTAGGCTAGGGAACAATCAGTTGTCTGGATCACTCCCCGAAGCTCTTCTAGAGGATAGCTCAATGATTTTATCAGAATTGGACCTAAGCCAGAATCAGCTTGCAGGTGTGTTGATCCTTTCTTCTTTAGTTAATTTGTTTGGTTGAAGTAAATCCAAGTAATCTATGGTTAATTTACTACTACTATCTATGATCTGAGGTTGTAGTTAGTTTGATAACAGATGAATAATCTTTAGATTGCTATCTGCTGGAAAACATGCTTGATTTGGTTGCAATCAAATGTAATGTATAGAAAACAATTCCTGAGCACTTCAGTATTGTGCTCTAGAAGAATGCTGTACAATTCTCTGCTTATGTATAATTATCATACACATTGTTCCCAATTCTTCCCTCGTTTAGAGGTATTTCATACTTATACTCAACTCTAAGGCAATTATTGCTGTAAACTTGCATTTTAATTCGTGGAATGTTCCAGTCTTTTTGATTTTTTCTTTTTTGCTGCATTATTAATTCCATCTCTCCTTGAGCCGAGGGTCTATCGGAAATAAATAGCCTTCCTACCCTCACAAGGTAGGGGTAAGGTTTGCATACATGCTACCCTCTCCAGACTCCACCTATGGGATTATACTTGATTTGTTGTGGTTGTTGTTGTTTGCTGCGTTATAAACAAGCTGCGTAAAGATATTCTTCTTGTGGTTGGAGTTCTAGTGAAATTTAAGTCTTTTGTTGGTCTTTCTAATTATTATATTTAGTTGTTCTTACCACAGGCCTAAACCAAGCTACTTCCTTTCCAGACTATTTCATGAAGCCATTTGCTATTTTGTCAGGTCCCATCGGAGGTATAAGTGCTGTGAATCTCAAGCTTCTAAATTTATCATATAACCAGCTGTCAGGCCCCTTGCCTTTCAAGGTTGGGCGCTGTGCAATCATAGACCTGAGCAACAATCGGCTAACTGGAAATGTGTCCCGGATCCAAGGTTGGGGAAATTATGTTGAAGTTATTGTGTTAAGCTCAAATGCATTGACAGGAACCTTCCCCAACCAAACTTCCCAGTTCTTGAGGCTTACTTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTTTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</genome_strand>
        <mrna_strand>ATAATAACCTGGACGGAGAGCTATTTCCTCACGATGGAATGCCATATTTTGACAGTTTAGAGGTGTTTGATGCAAGTAACAATCAGCTTACTGGTACTATTCCATCCTTCAATTTTGTGGTCTCCCTTCGAATTCTTAGGCTAGGGAACAATCAGTTGTCTGGATCACTCCCCGAAGCTCTTCTAGAGGATAGCTCAATGATTTTATCAGAATTGGACCTAAGCCAGAATCAGCTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATCGGAGGTATAAGTGCTGTGAATCTCAAGCTTCTAAATTTATCATATAACCAGCTGTCAGGCCCCTTGCCTTTCAAGGTTGGGCGCTGTGCAATCATAGACCTGAGCAACAATCGGCTAACTGGAAATGTGTCCCGGATCCAAGGTTGGGGAAATTATGTTGAAGTTATTGTGTTAAGCTCAAATGCATTGACAGGAACCTTCCCCAACCAAACTTCCCAGTTCTTGAGGCTTACTTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTNTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323555" ref_strand="+" ref_description="SGN-U323555        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock family protein, contains similarity to Swiss-Prot:P27397 18.0 kDa class I heat shock protein (Daucus carota) | chr5:7122802-7124003 FORWARD | Aliases: F22D1.140, F22D1_140(evalue: 2e-22, score=103) genbank/nr: gi|15209179|gb|AAK91897.1| hypothetical protein [Solanum demissum](evalue: 4e-96, score=354)">
      <seq>taaatttagcaaaattaaaataaaaatggattcaaagggagctgcaccaaatcaagtttatgaagattttgtgccaactacagagttggtgcaagaacaagactctgatactcttctccttgatctcacaggtttcagaaaggaacaagtgagggttcaactgactagaacaggagttgtgaagattagtggacaaagaccagttgctgagaacaaatggcttagatttcagaaggattttcctgtttcacaaaattgcgacaggacgaaaatcagtgcaaagtttgaaaatggcatactttatgtcaaacaaccaaaacttataacaacttcaccacagaaaaaagatcaagaattgccaacatctgatcctcaacagcccaacgacgagccacaaccaacgtctcagaagaaagacgaacaacaaacacaagacgaaaaaacacaaacagaagaattgcctaaacatcaggctactaatgctgaaaagcctgaaatggaagaacaagacactaaagaaacacctgctgagtatactggtgcaagtagcactatggaagaggaaaataaaccgagttatgcgtgtaaacttgataaagatgcatatactagaactgcagatgttgtagctgagaagctgaagatgccaaggaaactgatgaacatgactctgattgctcttttggttcttggaattggcctatatatcagcaataagatgaaatccaacaattaaatagtcgtgtttcgtctaataaaccaaaactaagttgggatatttgcatttctcccagcttatgtgagtgtatatgaagaaaactcacagactactgctccttcttcttattgcattgctgaattgtatacatgaaacgttcgtttcaaaaatttgtatcgaataaaaatacagtatgacatgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="23711" stop="21785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23411" g_stop="23281" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23280" i_stop="22880" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22879" g_stop="22078" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="933" r_length="802" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U323555" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23411" e_stop="23281"/>
          <exon e_start="22879" e_stop="22078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTAGCAAAATTAAAATAAAAATGGATTCAAAGGGAGCTGCACCAAATCAAGTTTATGAAGATTTTGTGCCAACTACAGAGTTGGTGCAAGAACAAGACTCTGATACTCTTCTCCTTGATCTCACAGGTGATCTTCTTTTACTATTTTTTTTCGATCGATGAAACGAGTTGTCGTCTCCTTATATTGTGTCTCGAGTAATATTTGCCTCGTCATGTTAGCTTTTGTGGTTGAGCCAGACTCAAAATTCATTTCCTTATAGTTTCTCCAAAATTCCTAAATAGTTGTTGCATGTGGGGATCGTAAAAAACCCTGTAATTCGACACACTTCTAACGATATTTTGTTTTTCGAAGAGTATAAGTAACACAAACTTTATGTCCTTAGCACAATGTCATTATTTTCATGGGAACCCCACAAACTAAATGTTACATTTGTTGCTCGGACTATTCAAAATTTATACTGAGAGATATTTGAAGAGTCGGAGCGACATAACATAACATAACATAACATTACAAGTGAAATTGTGCAGGTTTCAGAAAGGAACAAGTGAGGGTTCAACTGACTAGAACAGGAGTTGTGAAGATTAGTGGACAAAGACCAGTTGCTGAGAACAAATGGCTTAGATTTCAGAAGGATTTTCCTGTTTCACAAAATTGCGACAGGACGAAAATCAGTGCAAAGTTTGAAAATGGCATACTTTATGTCAAACAACCAAAACTTATAACAACTTCACCACAGAAAAAAGATCAAGAATTGCCAACATCTGATCCTCAACAGCCCAACGACGAGCCACAACCAACGTCTCAGAAGAAAGACGAACAACAAACACAAGACGAAAAAACACAAACAGAAGAATTGCCTAAACATCAGGCTACTAATGCTGAAAAGCCTGAAATGGAAGAACAAGACACTAAAGAAACACCTGCTGAGTATACTGGTGCAAGTAGCACTATGGAAGAGGAAAATAAACCGAGTTATGCGTGTAAACTTGATAAAGATGCATATACTAGAACTGCAGATGTTGTAGCTGAGAAGCTGAAGATGCCAAGGAAACTGATGAACATGACTCTGATTGCTCTTTTGGTTCTTGGAATTGGCCTATATATCAGCAATAAGATGAAATCCAACAATTAAATAGTCGTGTTTCGTCTAATAAACCAAAACTAAGTTGGGATATTTGCATTTCTCCCAGCTTATGTGAGTGTATATGAAGAAAACTCACAGACTACTGCTCCTTCTTCTTATTGCATTGCTGAATTGTATACATGAAACGTTCGTTTCAAAAATTTGTATCGAATAAAAATACAGTATGACATGATTTATACTATGGT</genome_strand>
        <mrna_strand>TAAATTTAGCAAAATTAAAATAAAAATGGATTCAAAGGGAGCTGCACCAAATCAAGTTTATGAAGATTTTGTGCCAACTACAGAGTTGGTGCAAGAACAAGACTCTGATACTCTTCTCCTTGATCTCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGAAAGGAACAAGTGAGGGTTCAACTGACTAGAACAGGAGTTGTGAAGATTAGTGGACAAAGACCAGTTGCTGAGAACAAATGGCTTAGATTTCAGAAGGATTTTCCTGTTTCACAAAATTGCGACAGGACGAAAATCAGTGCAAAGTTTGAAAATGGCATACTTTATGTCAAACAACCAAAACTTATAACAACTTCACCACAGAAAAAAGATCAAGAATTGCCAACATCTGATCCTCAACAGCCCAACGACGAGCCACAACCAACGTCTCAGAAGAAAGACGAACAACAAACACAAGACGAAAAAACACAAACAGAAGAATTGCCTAAACATCAGGCTACTAATGCTGAAAAGCCTGAAATGGAAGAACAAGACACTAAAGAAACACCTGCTGAGTATACTGGTGCAAGTAGCACTATGGAAGAGGAAAATAAACCGAGTTATGCGTGTAAACTTGATAAAGATGCATATACTAGAACTGCAGATGTTGTAGCTGAGAAGCTGAAGATGCCAAGGAAACTGATGAACATGACTCTGATTGCTCTTTTGGTTCTTGGAATTGGCCTATATATCAGCAATAAGATGAAATCCAACAATTAAATAGTCGTGTTTCGTCTAATAAACCAAAACTAAGTTGGGATATTTGCATTTCTCCCAGCTTATGTGAGTGTATATGAAGAAAACTCACAGACTACTGCTCCTTCTTCTTATTGCATTGCTGAATTGTATACATGAAACGTTCGTTTCAAAAATTTGTATCGAATAAAAATACAGTATGACATGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324442" ref_strand="+" ref_description="SGN-U324442        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | In2-1 protein, putative, similar to In2-1, Zea mays, EMBL:X58573 | chr5:632827-635088 FORWARD | Aliases: F9G14.100, F9G14_100(evalue: 5e-81, score=297) genbank/nr: gi|37051105|dbj|BAC81649.1| glutathione S-transferase [Pisum sativum](evalue: 8e-82, score=306)">
      <seq>ttgcagagaaaatcaacatcaatggctgctctaagtgtacaagaagttctaccagcaactctggaatctacttccgaacctccgtctctctttgatggaactaccaggttgtatatcaattatcaatgcccgtattctcagcgtgtgtggattaccaggaatgttaagggtttgcaagacaagatcaacttagttccgattgatcttcagaacatgcctgattggtacaaggaaaaagtttatccccaaaataaggtgccatccctggagcacaataacaaaatgataggagagagtttggatctggttaaatatgttgatagcaacttcgagggaccatcacttttgccggatgaccctgaaaagcggaaatttgctgaagaattgatagcttatagtgatatattcgtcccagaagtatacaaatcgttcttcagagatgcacagacactggctggtgcacaattcgattacctagagaaagctcttgacaaatttgacgatggacctttcttcctcggtcaattcagtcaggttgacatagcatatgttccatttatcgaaaggttccaaattttcatggaaaaggggattaactatgacatcacatccgcgaggcctaaactagccaaatggatcgaggaaatgaacaagcttgacggttacaagcaaacaaaagtcttggatccagagaaactggttgaatactacaagaacctctttctgaaaaaggcttgaaacttcaaaaatgcatttgatctagttacatgggctagtactttgatatatcaaatatgtttgtggagttctataatattatgtatcaataaattggctctgtatttttgtgattgtattttcctttatcatcataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="27120" stop="31277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27420" g_stop="27451" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27452" i_stop="28343" i_length="892">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28344" g_stop="28418" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="107" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28419" i_stop="28543" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28544" g_stop="28604" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="168" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28605" i_stop="29414" i_length="810">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29415" g_stop="29501" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="255" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29502" i_stop="29850" i_length="349">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29851" g_stop="29949" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="354" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29950" i_stop="30037" i_length="88">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30038" g_stop="30140" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="457" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30141" i_stop="30208" i_length="68">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30209" g_stop="30285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="534" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30286" i_stop="30465" i_length="180">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30466" g_stop="30573" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="642" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="30574" i_stop="30654" i_length="81">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30655" g_stop="30738" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="726" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30739" i_stop="30825" i_length="87">
            <donor d_prob="0.882" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30826" g_stop="30977" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="877" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U324442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27420" e_stop="27451"/>
          <exon e_start="28344" e_stop="28418"/>
          <exon e_start="28544" e_stop="28604"/>
          <exon e_start="29415" e_stop="29501"/>
          <exon e_start="29851" e_stop="29949"/>
          <exon e_start="30038" e_stop="30140"/>
          <exon e_start="30209" e_stop="30285"/>
          <exon e_start="30466" e_stop="30573"/>
          <exon e_start="30655" e_stop="30738"/>
          <exon e_start="30826" e_stop="30977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAAAATCAACATCAATGGCTGCTCTGTAAGTGTAAATTTGCTTCATCTTGTGTTTAATTTGTTCAAAATAGTTCGTAATTTAATAGATTTAGTTAAGTTTGAGGTATGAGATAAGTGAAGCAATAGATAGTGGGTAGCAGGGGCAGACCCACGTGGTGTTGCCGAGTGCTTGAGCAGCCATTAACTTTGTTACGAAATATATATATCTACGTAGAAATCGATAGGTATTTGTATAAAATTAGCATAGAGCAGCCAATAAATAAATTATATAGTTGGCCTAATGGTTCTAGGATGGGTACTTCAAATTCTTTTAGTGTTGTTGTACCAAGGTTCGAATCTCATTGTTAACACATATTTTTTACAGTTTCACTTCCCTACAACTCTTCTGGTTTTTTTTTGAGTTAGGTGCAAAGTTTATTTCTTTAAATATTAGGTACCTTTTATAGGAAAAGAAGAAGATGAAGTGTTACCTGGTACTTGTTGTTGTTTGCTAGTGGTAGGTATCCCGTGGAACTAGTAGAGATTGCCCAAAGATGTAGGGGATGTGGGGGTTACAAGACCATTGATTTGAAATTTTGGATTAAGTAATGGTTGAATATGCATGTTTTATGACCCTTCGGGGTGGCCTAGTGCTTTGGGGTTGGGACTTCTACGTTGGAGTTCTCAAGTTGGAAACCCCTTGCCAGCGAAAGCTAGGGTTTTGCCTTTTAGTTGCCTAGTGCGGGTTACCTCCTATGTGGTCTGCGAGTTATTGCATAGGAGTGAAAGTTTTACCATTTGCGCACGCAAAGTGTAGAGGCTGCGGGTTTCCCTTGTCATAAAAAATAAATAAAAATATGCATGTTTTTATGTAAGTTGATTTTTTAAGTTTGCTTTTAATATGAATGTTGATGGGGGTTATTCTTTTATTTGTACAGAAGTGTACAAGAAGTTCTACCAGCAACTCTGGAATCTACTTCCGAACCTCCGTCTCTCTTTGATGGAACTACCAGGTTTAATCACCTTTTACTTTTACTTACTTTCTTGTTTGCCTTAAGAAAAGTGTGTTCTTGGTCATCATTACGGAGTTATTTATGTAAGTGAAGGTTGTGATGTGAGTCTATTGTGTTGTCTGAAGGTTGTATATCAATTATCAATGCCCGTATTCTCAGCGTGTGTGGATTACCAGGAATGTTAAGGTTCGCCTTTTTACTGCTCCTTTCCATTCTATATTATCTCGCTTTTCTCTTTGCAGTCTGTTAAAGCTGGACAACTTTCTATATTTGGAGACTCTTCAACTTTGAACTAACCGTTTTACTCGTAATTACATATCTTTATTGCTATAAAAATGGCATGTCATATGTAAGATTGAAAGTTGAAACATACTTCTGATATGTGTTTTTTAATCCTTTTTCTTTTTCAAATTTCATGTCTAGTCAAATACCGCCACGTAGTCATTAATTTGAATGAGCATGGTTATATTAGATTTGAGTCTCTGTAAATTTAGTATGCTGTTTCATTCTGTGATGCTGTCTAGCCTGGATATTGAAAATGTGCATGAAGTGTTATATATCCAGCTAGTGCAGGACCGTTGGAATAAAATGGTGTACATATATGGTATGCAGTCTGCACTTGCATTTCTTTGAAGAGGCTTCACGCCTCTAAACCGGTGACTTCAAATGACAGTAAAGAAATAATTCTACTTTTTGTGTCAAGGCTCACTCTCCATGCTATCACACTGAAAGTAGTTATGACTTCCCGACTTTTGACTTCCACGATCCAAACTTGATGGGTCCAGCATATTCGGTTTGGATGAACGCGTTGTTCAAAAGTTCTATCCACCTCCGAAAGGAAGTGCTACTTAGAATTATTGATTTTATTGATGCCTTTTGTAAACTTCCGCTTGGAAGTTATTTCTATCCTACTTGAAATTAGTCAGTCCGTGTGTTCTTATACCCGGGAATGGTCTTGTTTACCTCGATAGATTTTATTAACATTTTGAATTGCAGGGTTTGCAAGACAAGATCAACTTAGTTCCGATTGATCTTCAGAACATGCCTGATTGGTACAAGGAAAAAGTTTATCCCCAAAATAAGGTAATTTTTAACTAAACCAACATTCATTTTCATTTGCCCAATTCACTTGTATTCATACGAAGTGAAAATCTTGAGCTAAGATTTTGACATTGACGTTTGGCCTTGTTGTAAATTGTTCGAGATCTCTTGAAGTAAATGTCCATGAATTTTTGAGAAAAGGATTTTTCTTCCTTTTCGAATTCAATGATTATTGACTGAGTCAGTGCATAAAATATTCTAGTCTTTATCTATCATCCAATTGGCACATACACTTTTATATAAGGACTTAGAAGGAAGTGAATGTTTACATCTTCGGAGAGCAGCATCTCATTTTACGTTTTCTGTTATTTATATTTTTAACTCCTCACAGGTGCCATCCCTGGAGCACAATAACAAAATGATAGGAGAGAGTTTGGATCTGGTTAAATATGTTGATAGCAACTTCGAGGGACCATCACTTTTGCCGGATGTAAGCTGCAAAAGTTCATTAACCCGTCTGTTTATGAAAAATTTAAGCTGTAAATTGATTTTAAAATATTACTGGCAAATTGATGCAGGACCCTGAAAAGCGGAAATTTGCTGAAGAATTGATAGCTTATAGTGATATATTCGTCCCAGAAGTATACAAATCGTTCTTCAGAGATGCACAGACACTGGCTGGTGAGATTTGAGCGTATTCTTTGTTAAATGTCTCTCATGTAAGTTAATGGTATTCACACTTGTACCAGGTGCACAATTCGATTACCTAGAGAAAGCTCTTGACAAATTTGACGATGGACCTTTCTTCCTCGGTCAATTCAGTCAGGTCATTACTTTATTTCATTTTGTTTTCCTTTCCGATGATGTGTCGTGTGAGATGGAATCTCTGCCCAAAAACATACTCGACTACTAGTGAGAGTAGCGTGAATGTACTTCTCTCCTAGAATTTCAAACTTCATAGATATAACAAACACTCTGTGCTGACATGAAAACTCTGTTATGCTAGGTTGACATAGCATATGTTCCATTTATCGAAAGGTTCCAAATTTTCATGGAAAAGGGGATTAACTATGACATCACATCCGCGAGGCCTAAACTAGCCAAATTGATCGAGGTATGACTAATATTACATTACACTCCCTTTGTGTGTATGTACGTGGAATGCTTTTTTATTCGTGTTTTAATCATCTCATAGGAAATGAACAAGCTTGACGGTTACAAGCAAACAAAAGTCTTGGATCCAGAGAAACTGGTTGAATACTATAAGAATCTCTTTCTGGTACTCGTTTTACAAACTTATAGATTATTTTTTTTTTGGTTTGAGAATTGTATATATAACTACATTTTTGTTTTTTTTTTCTTACAGAAAAAGGCTTGAAACTTCAAAAATGCATTTGATCTAGTTACATGGGCTAGTACTTTGATATATCAAATATGTTTGTGGAGTTCTATAATATTATGTATCAATAAATTGGCTCTGTATTTTTGTGATTGTATTTTCCTTTTATCATCATAAAT</genome_strand>
        <mrna_strand>TTGCAGAGAAAATCAACATCAATGGCTGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTACAAGAAGTTCTACCAGCAACTCTGGAATCTACTTCCGAACCTCCGTCTCTCTTTGATGGAACTACCAG.............................................................................................................................GTTGTATATCAATTATCAATGCCCGTATTCTCAGCGTGTGTGGATTACCAGGAATGTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGCAAGACAAGATCAACTTAGTTCCGATTGATCTTCAGAACATGCCTGATTGGTACAAGGAAAAAGTTTATCCCCAAAATAAG.............................................................................................................................................................................................................................................................................................................................................................GTGCCATCCCTGGAGCACAATAACAAAATGATAGGAGAGAGTTTGGATCTGGTTAAATATGTTGATAGCAACTTCGAGGGACCATCACTTTTGCCGGAT........................................................................................GACCCTGAAAAGCGGAAATTTGCTGAAGAATTGATAGCTTATAGTGATATATTCGTCCCAGAAGTATACAAATCGTTCTTCAGAGATGCACAGACACTGGCTG....................................................................GTGCACAATTCGATTACCTAGAGAAAGCTCTTGACAAATTTGACGATGGACCTTTCTTCCTCGGTCAATTCAGTCAG....................................................................................................................................................................................GTTGACATAGCATATGTTCCATTTATCGAAAGGTTCCAAATTTTCATGGAAAAGGGGATTAACTATGACATCACATCCGCGAGGCCTAAACTAGCCAAATGGATCGAG.................................................................................GAAATGAACAAGCTTGACGGTTACAAGCAAACAAAAGTCTTGGATCCAGAGAAACTGGTTGAATACTACAAGAACCTCTTTCTG.......................................................................................AAAAAGGCTTGAAACTTCAAAAATGCATTTGATCTAGTTACATGGGCTAGTACTTTGATATATCAAATATGTTTGTGGAGTTCTATAATATTATGTATCAATAAATTGGCTCTGTATTTTTGTGATTGTATTTTCC-TTTATCATCATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341770" ref_strand="+" ref_description="SGN-U341770        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G37290.1 | Symbol: None | RabGAP/TBC domain-containing protein, low similarity to Rab6 GTPase activating protein, GAPCenA (Homo sapiens) GI:12188746; contains Pfam profile PF00566: TBC domain | chr2:15664014-15668414 REVERSE | Aliases: F3G5.8, F3G5_8 (evalue: 4e-12, score=68.9) genbank/nr: gi|42569696|ref|NP_181266.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana](evalue: 3e-10, score=68.9)">
      <seq>gattgcgagttaatgcataaatttgatcagttattgctaaatcattgctatctgtaaatgtttctttgagttgtgagttaagggatagagatagattcaagattttttgctgatttgttggatctttcaaggttttgtttctatttcataagatgtcatgttaggttttagaggcatctgattctatttattagaattgggggtgaaccttctcggcaccaaaaacttggtgggaggaggtaataagttggtgagaagaatgctcttcatgtcaattggtgtatgtgtttttgattgactttacctgaggagcaaagaacgatatgggctgtagggtcagagactttaatgaagtatgttgttatccttcttgagtaagcgttcattggatgttgatgccagggatgcatatggatttactgtgagaccacaacatcttcaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="32270" stop="33543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32570" g_stop="32971" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32972" i_stop="33199" i_length="228">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33200" g_stop="33243" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="446" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U341770" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32570" e_stop="32971"/>
          <exon e_start="33200" e_stop="33243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCGAGTTAATGCATAAATTTGATCAGTTATTGCTAAATCATTGCTATCTGTAAATGTTTCTTTGAGTTGTGAGTTAAGGGATAGAGATAGATTCAAGATTTTTTGCTGATTTGTTGGATCTTTCAAGGTTTTGTTTCTATTTCATAAGATGTCATGTTAGGTTTTAGAGGCATCTGATTCTATTTATTAGAATTGGGGGTGAACCTTCTCGGCACCAAAAACTTGGTGGGAGGAGGTAATGAGTTGGTGAGAAGAATGCTCTTCATGTCAATTGGTGTATGTGTTTTTGATTGACTTTACCTGAGGAGCAAAGAACGATATGGGCTGTAGGGTCAGAGACTTTAATGAAGTATGTTGTTATCCTTCTTGAGTAAGCGTTCATTGGATGTTGATGCCAGGTAAAAGTCTTTTTGTCCTTCACAAATTAATTTGGGTAAATTGCTCGATAGAAGTGCATGTTTGTACATTTCAGCAGCATTTGACTGTTTTGTATATTTTGCGTGTGCCGCTTTTTTTTGTACACTACTTTCATGCTATTTTTCACCCAAAGAACAGTTGGTTTTCTGTACTAGGTGATTGAAGATTTTTTTTGATATGTATATCAAACTCTTTTGTTGTTTTGTCAGGGATGCATATGGATTTACAGTGAGACCACAACATCTTCAAAGAT</genome_strand>
        <mrna_strand>GATTGCGAGTTAATGCATAAATTTGATCAGTTATTGCTAAATCATTGCTATCTGTAAATGTTTCTTTGAGTTGTGAGTTAAGGGATAGAGATAGATTCAAGATTTTTTGCTGATTTGTTGGATCTTTCAAGGTTTTGTTTCTATTTCATAAGATGTCATGTTAGGTTTTAGAGGCATCTGATTCTATTTATTAGAATTGGGGGTGAACCTTCTCGGCACCAAAAACTTGGTGGGAGGAGGTAATAAGTTGGTGAGAAGAATGCTCTTCATGTCAATTGGTGTATGTGTTTTTGATTGACTTTACCTGAGGAGCAAAGAACGATATGGGCTGTAGGGTCAGAGACTTTAATGAAGTATGTTGTTATCCTTCTTGAGTAAGCGTTCATTGGATGTTGATGCCAG....................................................................................................................................................................................................................................GGATGCATATGGATTTACTGTGAGACCACAACATCTTCAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344722" ref_strand="+" ref_description="SGN-U344722        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G55020.1 | Symbol: None | RabGAP/TBC domain-containing protein, low similarity to SP:Q9BXI6 EBP50-PDZ interactor of 64 kDa (EPI64 protein) {Homo sapiens}; contains Pfam profile PF00566: TBC domain | chr3:20399846-20405888 REVERSE | Aliases: T15C9.20 (evalue: 1e-80, score=296) genbank/nr: gi|50931717|ref|XP_475386.1| 'unknown protein, contains TBC domain, PF00566' [Oryza sativa (japonica cultivar-group)] >gi|49328078|gb|AAT58777.1| 'unknown protein, contains TBC domain, PF00566' [Oryza sativa (japonica cultivar-group)] (evalue: 8e-81, score=303)">
      <seq>aggcgtctacttatagcatatgctcgacacaatccacatgtggggtattgccaggcaatgaacttttttgctggtatcttgcttctaatgatgccggaagaaaatgcattctgggcattggtgggtcttattgatgaatactttgacggctgttactcacaagagatgatggaatcccaggtggatcaattggtgtttgaggagctggtgcgcgaaaggtttaccaaacttgtcaatcatcttgattacttgggaatgcaagtggcatggatttctggacctaggtttctttcaatttttgcaaatgtgcttccctgggaaagtgttttccgagtttgggatgtgcttctctttgagggaaatcctgttatgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="34675" stop="39889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34975" g_stop="35028" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35029" i_stop="37111" i_length="2083">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37112" g_stop="37170" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="113" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37171" i_stop="39042" i_length="1872">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39043" g_stop="39109" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="180" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39110" i_stop="39186" i_length="77">
            <donor d_prob="0.796" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39187" g_stop="39238" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="232" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39239" i_stop="39336" i_length="98">
            <donor d_prob="0.517" d_score="0.94"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39337" g_stop="39429" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="325" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39430" i_stop="39537" i_length="108">
            <donor d_prob="0.769" d_score="0.96"/>
            <acceptor a_prob="0.875" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39538" g_stop="39589" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="377" r_length="52" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U344722" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34975" e_stop="35028"/>
          <exon e_start="37112" e_stop="37170"/>
          <exon e_start="39043" e_stop="39109"/>
          <exon e_start="39187" e_stop="39238"/>
          <exon e_start="39337" e_stop="39429"/>
          <exon e_start="39538" e_stop="39589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGTCTACTTATAGCATATGCTCGTCACAATCCAGATGTGGGGTATTGCCAGGTATGGTGTGGCGTTTTTGCAGAAGTATTCCTTTTATCATTTCCTCAATATTGTTGGTTTCAAATCATGATATTAGTATGATGAAGGAAGCTATAAATTGTGCCAAGCTGACATGCTAGATGACGATATTTTCCAAAATTATTAATGCTTGACAAATGTGGAAACCGTGAGTTGTGGAGCTAAAGCTGTTGGTTGAATACATCTAAATATATGGGTGTTAATGTTTGGATATCTCGTTCCCGCTATATGATTTTTCCTGTTATTGTGTTTTGATATGTTTGGCCCATTTTTGTAAATAGCAATCAATATTCTTGGGCCTTCTTCTTTACTAGCTTAATTTTTCCATATTTAAAATAATTCCAGCGTATAATGATCTAATATTTCTTATTATGGTCTTAAATGTGTGATCTCCTTTCTGTTTTCCCCCCTTTGCTATGTGGTCTTGATTTGACCTCTTTCCAATAGGCTATCTCACTTTTTATGCACTTCAATTTGTTTTAATACATGTAGGACTAGTTTGTTGGTAACAACCTAGGACTCAATTCTCATTTGATTCAATTCATAATGTTGTAGTATTTATGCCTACGGGTTCATTTTAGATGGAAGGAGTACTTGTTACGCTAAGTGAAAAAGTATTACACATGCCATATTACAGTTGAAGGTTGTGGTCATGATTAAGAAAAAGGTTTATGATTGTGGGACTTGTTTGCAGTCAAGGCAGAAGGAGAACATTTGGCAGTGTTCTACACCCCCATCATGTGGGGTCGGATAAAAGAATAGGGAAAATTAAGACTGGTGTAGGTTCATTTGCCTATGGTAAGGGTAATGTTAAGTAGGGCTGACAAAATTAGTCCATGAAATATGACCCTTCCAACCTGCCCGAGAAGGGGTCGGTCATTGACCCGTGCATTTATTAGCTCAGTAAAAAATGGAAAAATATGTGATCAAAATTCTTCTAAAAAGATATATTTTTTATTTGATAATTTATATAAAGCCATAATGAAGGGTTGGGTTATGACCCAGTTTTTAGTCAATTTCAGTCCAACCCATTCCAACACGAGTAACTTTGGGTGAGTCAATAACCTGTCCATTTTATTAACTCAGCTCATTTTGACCCGTCCAAGTCCAGCCCAACCTGCCCATTGACACCCCTAATGTTAAGCTAGATGAGGTTGCTTGTTCCATATGGAGTTGTAGGCCTGGAAACCATTTCAGCCATAGCGTAGACTCAGTTGACAGAAATTAATGTTCAACAAGGTATAGGAGAATCTCCATATAACTTAGAGAATCTTTATGTCATGTTATCAAAGTTGTTATTATCCTTGCTTTCTTTAATCACAGATAGTAAACTTGTTGATAGATTAGGACTGCTCTTTAATCTCCATCAGATCCATATATTGTATGTCCAGTTAATCAGCCCACCTGATTTAGGTATTCTGATTTCACCAAGCCCAAGAACAAGAAGCCTGTGAGAATTATGCATCAAACTCAAAAGCTTAAGGCTATAGGTGCAGTAGAGCAAGATCTTTATTGTTGCAGACCTGATAAACAAATAAAAAGTCCTCTCTAACGATTTATTTTCAGATTAAATATTCGTGAATTTCAACATGGAAGCAGAGTAGGCAGAGTTCCTAAGATCAAGTTCCATAGCCACCCATTAACAAAAAAATTTCTTGTAAAAGAGTGATAAGAAAGAAGCACAATCCTGGTGGCTTTTTGTAAATATACTTGTGGCTTCAATTTTTCATAAAAATGGAAGAGAATACCTTGAAATTCCATAGTAAGAAAGAGAAGAAAATGAGATGGGATACACATTATTATGGCTATGAGTTTTAAGAATACGGGGGTGCATTGTCTAAACCTGATTTAATTTTCCTTAACAGCCTACAAGATCAGATGGATGTAGTTACCTTTGTAGTGGTACTTATTCTTTTCGTTTCATTGGCATGCATGAAGTTTAATTGTCCGTTTTATCCTCCTGCATTCTAAGTTGGATGTCCATTACTGTAGAGTTGAAAACTTGATCACTTGTCCAAGCTATCCTTTTCCATAGTAAGTTCATCTGTTCTTTTAATTTTTGCAGGCAATGAACTTTTTTGCTGGTATCTTGCTTCTAATGATGCCAGAAGAAAATGCATTCTGGTAAGTTCCCAGTGAAACTTCTTGTAACTTCTTTTCACATGGAATGTCTTGTGTATAGATTCATATATGTCTAGATTGATTGTATTTGGCTAAGGTAAATCTTATAGAATATCCTTCAGTTTAGAAAAAGGAAGAACTTGGGAAATTTTCTATAGATGCTTTCTTTGAAATGTTAACTGTTGGATATTTGATTACCTTATTAGCGGATTAATTACCTATTTTATGGTGTATAACATAACACTCTAATATAGGGAGCACCTCTGGACATTCTTAAACAAGTCAATGAGAAGCTTTTCTATTTCCACATGACATCTCAACTAAAAGATCAACTTTCTTCAGCATGGTCTCAATGCATCTACGATCTTGTTAGAGACTCAAACAACTTTTGCTACCGTCAGGCATGCTGCCGAAGTGTGTTCATGTGACCAATGTTATCTTCTATTTTTTCATTTTTTCAAAGGAATACTAAAATTAATTATGTGAAAATAGAAAAGCTTCTCATTGACTTGAATTAAATAATGTTAAAGAGGTGCTCCTTATATAGGAATCTTAGACTATGTATGATATGATAGGTTGATAATGTAAAAGAGGTGCTCCTTATATAGGAATTTTAGACTATGTATAATATGTTAGGTAATGAATCCCTAGGCTACTAATAAAGTAAGGACCCAACTAGATAGAGTATCAACAATCTTGCTAGGCATTGTCAATTGTATGCCTCTTGTGATTTATGGAAGTCTTCCATAGCTGGTCAGTGATTCTGCAATGCAAAAACAAATGTCCCACTGTCTCAGCTGCCTCACCACATAAACAACAGTGTGTGACCATAATAATGTCATGTGTCAAGACAGCTTCTTTTGCTAGCAACCATGAGAAACATGCCAACTTCAAAGGTGCTTGGTTCTCCAGATTTGCTCCATGGCCATATTAAGTTCTGTGCCACTGTCGAGTTCAGAAGAACTAGAATTTGTAGGGTGATAAACAGGTGATGTACCTGTTTCCGCCCAACACCCTTCAAAAGAAAGAGCAAAGGAAACAGAATTTTATGAACCCCCCCCCCCCCTTCTTTACCTCTCTTTTATGCATTCATATATGTGTTGTAGCTCTTGGGTGGTATTCTATAATTGCTTTTGGCTTTTTTAGCTCATTCTTTTGAACCTATTACAACCTGATTAATCAGTATGCTATAGCCTTCTTAGCTTTTGCATATCACCATTCCCTTGCATTGTTTATAAAAAATGATTTGTACTGCTTCGACTAGTCCTACCCTGTCTTATTAGGACACACAATGTGCTTCTGAGTAGTAATAATATCACTTAGTATGCGACTAACATTGTTTCCTCAGCGATCGCTACGATTCCTCTTCTTCACACCTCACTCTATTGACAGAAAATTCAATTCAATTATCAGATCCTATAAGGTTGTATTGAACCATTTCTATCTTGTGCCTTTTGTTCAATGCATTATTTTCTTGAGACTGGTACAATGTTATTCAATGTGTTATATTGGTCACTTGTTTAAGTAGTCTTGCTCTTTATCAACTTTGTTGCTTGAGGATTTCTTTCAATTTGGTGTTGTTAAGTTTGTCAAAACTGCAACTAGAAGACTGGCGCTGATATTATGATGGAATATCATAAGCTACTTGAGGTCTGTTCAAGAGACAATCTAGGATATGCGCTTTCTTCCACGTGACTTGTTAAAATACATGTATATTTGTTTGTGTACTGAAGTGGTTGTTACCGAAGTATTTTATATATTTCTTGAGATTGATATGGAAACCGATATTCATTTAATTTTAGTAACTATACAAACGTTATTTAATTATATTCATATGGAACTAAACTTATAGGCTGGTTTGTTTCGAATCTCCAGGGCATTGGTGGGTCTTATTGATGAATACTTTGATGGCTGTTACTCACAAGAGATGATAGAATCCCAGGTTTGCATAACCTACACGTAATTCTGGCTATGCTGGATAATCATAACTCATGCAAATGATTCCTTTTTTCCCATTAGGTGGATCAATTGGTGTTTGAGGAGTTGGTGCGCGAAAGGTTTCCGAAACTTGGTCTGTCCATGGCTTATATCTGTTTTATCTTGGTTGTCTTCTTTCCTCATCAAAACAATCCAATCGCTGTTTCTTATTCGTTGATCCTTTTGCTGTAGTCAATCATCTTGATTACTTGGGAATGCAAGTGGCATGGATTTCTGGACCTTGGTTTCTTTCAATTTTTGTAAATGTGCTTCCCTGGGAAAGTGGTAAGGTTCTTGTTCTGTGCAGTAAACTTTAGCTATAGTAAAACAGTTCATGTTCTTGTTGAAGATTGTTTAATTACTTTTCACCCCAATGTATTGTTTTACATCCAGTCCTCCGAGTTTGGGATGTGCTTCTCTTTGAGGGAAATCGTGTCATGATCTT</genome_strand>
        <mrna_strand>AGGCGTCTACTTATAGCATATGCTCGACACAATCCACATGTGGGGTATTGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAACTTTTTTGCTGGTATCTTGCTTCTAATGATGCCGGAAGAAAATGCATTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGGTGGGTCTTATTGATGAATACTTTGACGGCTGTTACTCACAAGAGATGATGGAATCCCAG.............................................................................GTGGATCAATTGGTGTTTGAGGAGCTGGTGCGCGAAAGGTTTACCAAACTTG..................................................................................................TCAATCATCTTGATTACTTGGGAATGCAAGTGGCATGGATTTCTGGACCTAGGTTTCTTTCAATTTTTGCAAATGTGCTTCCCTGGGAAAGTG............................................................................................................TTTTCCGAGTTTGGGATGTGCTTCTCTTTGAGGGAAATCCTGTTATGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322681" ref_strand="+" ref_description="SGN-U322681        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G02800.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:635230-637480 REVERSE | Aliases: F9G14.110, F9G14_110 (evalue: 2e-67, score=252) genbank/nr: gi|37625033|gb|AAQ96340.1| protein kinase-like protein [Vitis aestivalis](evalue: 9e-71, score=269)">
      <seq>tgtgaaagggctttttcttttttccctctctcgtgtgtagggtgccactcttcaatactttgtgtatatatatagtctatattatgtatagagagagagagtagaaggaggtgagagaaatgggttggtttccatgttctggagcattgaagcagacctcaaagaagaggaagaagaagaagaagaaagattcgtctaattcggttcaactcggttgtgataagttgaaggcaaagactctgttaggttcaaaggagtatgttaaggatggcgagtctggtcaaattggagccaagatttttaaatttcgtgaattagcagttgcaacaagaaactttcgaggtgattgtcttcttggagagggaggattcggaagagtatataaagggcggctcgattccaatcagattgttgccatcaagcaactcgatcgtaatggattgcaagggaacagggaatttcttgttgaagtgctgatgctaagtctgttacaccatcctaacctggtaaatttaactggttattgcgctgatggagatcaaagacttctggtttatgaatatatgccactaggatcactggatgaccatcttcatgatcttacgcccggtaagaaagtgcttgattggaatacgagaatgaaaattgcagctggagcagcaaagggcttggaatatttacatgacagagcaagtccacctgtaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="52342" stop="47066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52042" g_stop="51824" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51823" i_stop="49697" i_length="2127">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49696" g_stop="49509" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="407" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49508" i_stop="47743" i_length="1766">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47742" g_stop="47553" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="597" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47552" i_stop="47478" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47477" g_stop="47366" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="709" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U322681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52042" e_stop="51824"/>
          <exon e_start="49696" e_stop="49509"/>
          <exon e_start="47742" e_stop="47553"/>
          <exon e_start="47477" e_stop="47366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTGGTAACTATAAAAATGCATATTTTTTCGTATAAGAAGACTAATTTAATGATTATGTGAAATGGGGTTGTTGTATATTTGTCAAATTTCTAGTTTTTATTGTGATTTTGGAGGTTTAAGTTTTAATGGTTCTGTAAAATTGGTCTTTATGTTATTTTGGAGCTTCAAGTTTTAGTGATTCTGTGAAATTGGTTTGTTGTATATTTGTCAAATTTCTAGTCTTTATTGTGATTTTGGAGCTTTAAGTTTTAATAGTTCTATGAAATGGGTTTGTTGTACTTTTGTCAAATGATTTGAAGTTTTTTTTTTTTGTGATAATTTTGTGAAATGGATTTGTTGTATATTTGTCGAATTTCTCGGTTTTATGTGAATTTGGAGCTTTAAGTTTTCATTTTCAATGATTCTGCGAAATGGGATTGTGTTGTATTATTGTTGAATTTCTCTAATTGGGGATGATTCAGAGCTTCAAGTTTTAATGATTCTGTTAAATGGGCTTGTTGTGTTTTTGTCAAATTTCTTAGTCTTTGGATGATTTTTGGAGCTTCAGTTCTACATTATTGCTTTAGTTTTACATTATTTAGAGAAATTTTGGAGGTGTCTAAGAACTCCTAGTTTGCCTAAAAAACATGAGGAATTTGTTAACATTGAATGAAATGAGCCCGAATTGAGCAAAATGATATAGAGGATTCATATAGCCGACTCCAATTAAATTAGGATTGAGGGACAATTGGTTGACTGATTGATTGCTTTAAGATGTACAGTTGCAACTGTTTGGTGGCGTGGAACTATATCCCTTTTGACAATCAATGGTAGTTATGGTCATTTTTTGCTAATATTTAGGGGTAGCCCCAACCTGCTAAATTTTGCCTTATTGCTTTGGTTGTTTTCATGGAGTTAATTAGTAGAGACGAAGGATTTAGGAGGTGCCCGAAAATGAATCAGAATGTAGTATGAAGGGTTTTAGGAGCTAGTTTTGTGGCTTAAGCTGGCGGATATTGCTCTTAAATATGGAAGTGGTTAAGTTTGCCATCCGGTGACTTAGAACAATGTCAACTGTGCTTTAGGGTGAAGAAGTGAAGATGTCTCTTAAGGTTGCATGAAAGTCTGTTTCATGGTTTCATCAGATATATTATGTCAACGAGCATTTGCGCTTCTAGGATCAAAAGGAAGCATAGAAATGACGAATGAAAAGATAACATGGTGAGCTGTCAGTAATCTTAAGGTCAATTGGCACCCAAAGGTGTGGCTAGCAGTCAATGACGTTTGAATAGATTATGGGAAACCAAGGTTCAAATACCAATAGAGACAAAAAAACACTAAATGATTTCTTTCATTATGTAAGTTTTGGTGGACAGAGTTACCCGGTAAATATGCTGATGGGGAAGTATTAGGTACTCGATGGATTAGTTAAACAGTGACAAGTTTGATTACAATATTTATTTTAAGAGGAGTCTTGAGGTCAATTATTCCTGTCTCCTTTCTGGAAAGGAGCAACTTTGCTTCTTTCCCTCCCCATTTTTAATGTTTTTGTTTGTATTAATAAGGTGAGATATACTAAAACAAGAGCCATCCAACTCTAGTCAACTCCGCAAAATTTCTTTTAAGAAAAAAATGAGGAGCTTTCTATTGGATATCCAAGAGTTTCAACTTCTATTTTACCATCCAAGTTTCACAAAGCTACTTTGTTATGCAAATTTAACTCATCTCTTTTTCTTTTTTAATGTTCCATCAGGTGACTCTAGAAAGTTTTCCTTTCCAAATGGACCCGGTAATGTGGGAACCGGTTGATAGGGAATAATAACGGCTGTTGCATAGTAGAAATGAATTCTTGGTGCTATTTACCGAGTTAGCTAATCCAACCATGCTGTTCTTACTGTATCTTGACTGTCACAATAGAAAATTTCTTGAGAGCACTCAGTTATTGAAACTGCACAATTTCCCAGTACATCAAGTGGTTGTACCAAGTTCTGTATCATGCATTTCCCAAGATTGGACTAATTGAGAAGTGATCTAGATCGTTTTGGCTTCTTGATCACCTAGTTGGCTATATTGATGTTTTTGAACTGTTTGGTTTGACTTTCAGTTCCGTGTTTTTTTTTCTTTTGTAATTTCTCTTTTTTTCGTGTTCAGATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAGGTCTTTTCTGCCACTTTTTTCTTTTCAATAATGGAATGAAGTTCTTTTTTCGGTCTCCATCTGGTAATGCCCCCAATCCACCAGATTTTGGTTGAACTTGCTATTTTGTCGCATAGTGTTCATGAGGGAGATTAGTATGGTTTTCACTATTAAATTTCCTTTCTTCTTTCTTAAATTGTGTGCAAGTCTACCCTCTTCTTTATGGAAGGAGTAGGACGAAAATGACCTTGGTGTTTATCACTTCCTTTTGTTTATTATAATAATGGTAATGACGATGATCTATTGGTACGGGTGCTACTTGTGATGTGTGGGATATGGGTGCATGTCATAGGTTCAAACCCTGCCATAGACAACAACTTACTATAATCCATCAAGTTTTAAACCGTGCGCAACTAGTCCTTGTGGATTTCTCTTCTTTTGTTCCTCTTTTATGAAGCTCTCCAGCATATCCTTAATGCTGAAAAATACAGCATTTAGAAAGAACCTTGATGACGACTTTGAAGTGCACATAAGTGAGGCGAAGTGCGCAACACGTTTTGAGCCTTGCTTCAGGGCTTAAGCGCGCCTTTGATAACACTGCTTGCTAGGCTTTATAACATTTCATTTATATAAACATCAACCTACAAAACATGAAAATACAGAAGATATAAAAGCAGCACTCCGTTGTTGTGGTAGGCAATGCAGTTTGTCCAGTATTTTTCTCCACTCTGGTAAATCTTGGCCTCTGATATGTATGTGAAGGGCTACCTCTCTGCAGACTTATCAACAAAATAGTGAGCTACATTGAACCTTAGTCCATAATCCATTTCTTTCTCTCCAAATAATAGCCACAACCATAAATTATATACTACATATAAATCATCTGCTGCCAGATTTTGTTGTCGCCTACCTGTTAGCCCAATTAACATACCTAACACTTTGGAGGTGATTGCCTTCGTGGAGAGAGGATTTGAAAGAGTATATAAAGGGCGGCTCAATTCCAGTCAGGTTTTTTTCTGTTACTTTTTTCTTTTCAATATTAGAATGAAGTTCTTTTTTTGGTCCCTCCAGTCTGGTTATGCCTCCAATCCACCAGGTTTTGGTTGAACTGGCTGTTTTGTCGCATAGGGTTCATGAGGGAGATTAGATCAATCAACTATGGTTGGGGTATAAATGGACGTGGGCGGGGGATTTGGTGCATGAAGTGGAGTTACTGGAAAAATTGGGGTACTTTTCTCAAAACGAAATGAGCTTTTTGATTTGCAATTGAAACCTCAAAACTATTGCAGAGAGTTTGGATCTTTATCTTTTGATTTTGATCTTCTTCTGGCAATTTTTTAACAAAATCATTCGACAGTCGCATCACCTGTTATTGTGTTTGCTTTCATAGGTTTTCAGAAAGTGTAAAATATGGAGGTTACCTTTTCTTTTCTTCTTGCTTGTTTATTACAGAGGGTGGTTCCAAAGTAGGTAGTGGGCTGGCGGCCAATTAAGAGAAGTGAGGAAACTGAATAATTAAAAGCCGTGACATTTGAATTGTCTAAGAATTGTTTTGTGACGAGGGTAGTTAGTTTTGTCTTAACAATGGCCATGTGTCATTTAAAGATAATGCCACTTGGCTGTTTGTGGGATTCTGCCCCTGCTTCAATAAATACTGTATAAATATATAGATAGATAGATAGATATAGACTTTATCTTCGGGTACTGTGCTTAATAATATTGCTTTGGACATCTAAGATGTGGGCTGGATCTATGCTTTGACACCTCTTCTCATATATCTTCTATAGATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCTGGTAAATTTAACTGGTTATTGCGCTGATGGAGATCAAAGACTTCTGGTTTATGAATATATGCCACTAGGATCACTGGATGACCATCTTCATGGTAAGTTCTTTGGTAGCCTCTTCCATTCTCTATGCATTTTTGGTTGAGATATGAATTTAAATAAGATATTTGCAGATCTTACGCCCGGTAAGAAAGTGCTTGATTGGAATACGAGAATGAAAATTGCAGCTGGAGCAGCAAAGGGCTTGGAATATTTACATGACAGAGCAAGTCCACCTGTAATATA</genome_strand>
        <mrna_strand>TGTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCTGGTAAATTTAACTGGTTATTGCGCTGATGGAGATCAAAGACTTCTGGTTTATGAATATATGCCACTAGGATCACTGGATGACCATCTTCATG...........................................................................ATCTTACGCCCGGTAAGAAAGTGCTTGATTGGAATACGAGAATGAAAATTGCAGCTGGAGCAGCAAAGGGCTTGGAATATTTACATGACAGAGCAAGTCCACCTGTAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314970" ref_strand="+" ref_description="SGN-U314970        Tomato 200607 #1 [48 ESTs aligned] arabidopsis/peptide: | Symbol: ATPADK1 | adenylate kinase family protein, contains Pfam profile: PF00406 adenylate kinase | chr2:15649016-15650797 FORWARD | Aliases: F3G5.4, F3G5_4, ADK, ATPADK1(evalue: 6e-105, score=377) genbank/nr: gi|25990718|gb|AAN76661.1| adenylate kinase [Solanum tuberosum] >gi|29427816|sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplast precursor (ATP-AMP transphosphorylase) (evalue: 7e-130, score=466)">
      <seq>cctttttccctttttctcttcacacttctcaagaaaaataactccgggagaattttccggcaatggcggccatgatccgcctgttcagatcttcatcatcttcatcatctcttatcagtagatctttatctacagcagctgcatctgagacagtgaaatcccgatcttaccctcattctacaagtgttgaacccaaggctaaatctgttcaatgggtctttttgggttgtcctggtgtcggaaaaggtacatatgctagccgtctctcaacccttttaggcgttcctcatattgctactggagatcttgttcgtgatgagttgaaatcttcaggtcctttatcgaaacaacttgcagagattgtcaaccaaggaaaattggtttcagatgagattatactgaatctactatccaaaaggcttgagagtggggaagctaagggtgaagctggattcatacttgatggtttccctagaactgtgagacaagcagaaatattgaccgaggtgacagacatagatttggtggttaatctcaagcttccagagcgggtattggttgagaaatgccttggccgaagaatctgcagtgaatgtggaaagaatttcaacgtggcatctatagatgtcgctggtgaaaatggggctcctagaatcagcatggctccccttaatcctccctctcagtgtatatcaaagttaatcactcgagcagatgatacagaagccattgtgaaggaaaggctcagtatatactgggataagagtcagcctgttgaggacttctaccgtagccaaggtaagttactggaatttgatttaccgggaggcatccccgaatcatggcctaagttgctggaagttctcaaccttgatgaacaagaacataaactgtctgctgcagcttagtttctctccgctgctttgcttgtgtgctacgcgttaaacaattttgcagaaaaaagaacatattgattcgtttcccttctattttccgcttaaatttaagtcaaaataacaaaccttttgagtgtactttgaagccgtaacaatacggtggcatccattgttgaatttcgaattcatatgaagaggtctgttgtaccatagtttcaactaaagagttataaagatgattatttttttacaaaaaagtaataagcttatagtaattgatagcattctgatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="-" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="57659" stop="54125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57359" g_stop="57010" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57009" i_stop="56135" i_length="875">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56134" g_stop="55994" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="491" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55993" i_stop="55296" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55295" g_stop="55023" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="764" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55022" i_stop="54854" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54853" g_stop="54417" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="1201" r_length="437" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="-" ref_id="SGN-U314970" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57359" e_stop="57010"/>
          <exon e_start="56134" e_stop="55994"/>
          <exon e_start="55295" e_stop="55023"/>
          <exon e_start="54853" e_stop="54417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTCACTTTTTCTCTTCACACTTCTCAAGAAAAATAACTCCGGGAGAATTTTCCGGCAATGGCGGCCATGATCCGCCTGTTCAGATCTTCATCATCTTCATCATCTCTTATCAGTAGATCTTTATCTACAGCAGCTGCATCTGAGACAGTGAAATCCCGATCTTACCCTCATTCTACAAGTGTTGAACCCAAGGCTAAATCTGTTCAATGGGTCTTTTTGGGTTGTCCTGGTGTCGGAAAAGGTACATATGCTAGCCGTCTCTCAACCCTTTTAGGCGTTCCTCATATTGCTACTGGAGATCTTGTTCGTGATGAGTTGAAATCTTCAGGTCCTTTATCGAAACAAGTATGTTGTGCTGCTTGTCCCTTTTTTTCTTCCAATAAATTTGGGTTTTATCTGTAAAGTCAAATACTTGTTGCTTAGAGTGCATTCATAAATTTTGAGATTGATTTGTTGGTGAGTTAATCGGAAATGGTTTCTCTATCCCACAGAAGTAGTGATAGTAGTGGTAGGGTGTGCGTGTATCCTACCCTCTCCGGAGTAGTTGTTGTTGATTTCACTTAGAGTGATCGAAAATAGTACCCCATAAAGGTAGAATTAGATGTGTATATCTTACCTCCCCAAACCTCGCTTGTGTTATTACACTGGGTATGTTGTTGTTGATATCTTCTAGAGTCGCCTATGTGTTGTGTAGAGTAAAGCGGATGTTGTCCGAGGCACAGATGGAGAACGTAAGATTGGGAAAATGATTCTTTATGATAGGGAATGAAGGGATGGTAGACTAGATTGGATCTAATTTGGCAGAGAAGAGACCGCGAAAATTTGATCCATTCAGGTAATGTCTGGAAATAAGTTTGGTGGAAGCTTAATAATTGAAGGTCGGCCTTATCTAGAGTTTTACTTACTCGTATATCAAGTATGCTATGTTGTTGTCAGTGGACGAGACTATTCCTATACTTTTGGGGAGTCTTTTAGTCATGATTTAGATTTATATACCTGTAAAAAATATAGACGTTCTTGAAGTTATTATTTATGTTTTAATTTTTGTGTGTTAGCCTTAGATAATCTAAAATGGAGCTATATGGTAATAGAGGATTCATATGGCCGACCCTAGCTTGAGTTCGGGATTGAGGCATAGTTGTTCTTATTATATTATCTCCAGTTTATGGTGTTACTTCATGAAATTTGTTCTTCTCCTGACCGGCTTCATCCTCTTTCAGCTTGCAGAGATTGTCAACCAAGGAAAATTGGTTTCAGATGAGATTATACTGAATCTACTATCCAAAAGGCTTGAGAGTGGGGAAGCTAAGGGTGAAGCTGGATTCATACTTGATGGTTTCCCTAGAACTGTGAGACAAGCAGTGAGTATACATTTAATTTTCCTGCATAAAATTTATCTATGCTCTGGTTATCTCCATAAACCTTATATATTGAGATTGAAATGTTATGCTCTGCTTATCTGTGAGAAAATAACTAGCCTATGACGGTGAGTATGAATTAACCATTCCCGTCTAACCAAAAAGAAGAAAAGTAAGAAGTTAGAGGCTAAATGCTGCTCAAGTTAGGTTCAATGTTAAATGCATTAGCCTGAATATTGGAAGTCAAGAATGATGCTTGGAATAGTGTATTGTTGTATTAGTTACTTAAAACCTTCATAAAATAGGATTTTATTACCACTGTTCATTAAAGTAGCTTCTTGAATGCCTGGTAATTTCTGCCCTGTTCACGACTTCACCCTACTTCTTTGTCTAATTTATATGACTTTTGGTAAAAAGAATTGTGACAAGACTTCTGATTTTAGTCTTGTCAGCAGAGGTATAGGAACTGGGAAAGAAAGTGAAGATCCTTTGCAACAGTTCGCTACCTTTTTGTCTATGAAAAGGTACCCCCCACCTTATGTGGCTAGCGGGGTTTGAAAAGAGGATGGAAGTGATATCAAAACTCTATTTCGTATTCCAGTCGCTTCTCCAAGTACATTTGTGTAATCAAAATTTATCTCAGAGGTGTAAAACAAAGTTTTGTGCTAGTTATATAACATTCGTGTCTATTTCTGCATCAGGAAATATTGACCGAGGTGACAGACATAGATTTGGTGGTTAATCTCAAGCTTCCAGAGCGGGTATTGGTTGAGAAATGCCTTGGCCGAAGAATCTGCAGTGAATGTGGAAAGAATTTCAACGTGGCATCTATAGATGTCGCTGGTGAAAATGGGGCTCCTAGAATCAGCATGGCTCCCCTTAATCCTCCCTCTCAGTGTATATCAAAGTTAATCACTCGAGCAGATGATACAGAAGCCATTGTGAAGGAAAGGCTCAGTATATACTGGGATAAGGTACTGTTCTGATATTTTAACCACAATATTTTCAAGTTCCGCTATTACTCTAATAAAGCATTTTTCCTCAACACGAGTAACTACTATCAGAGCAACACTCACAAGTTAACGCCTTAACAGTCATTCAGCATCTATGCTATCTGATTCTCGCTCTTATTTATGATTGCAGAGTCAGCCTGTTGAGGACTTCTACCGTAGCCAAGGTAAGTTACTGGAATTTGATTTACCGGGAGGCATCCCCGAATCATGGCCTAAGTTGCTGGAAGTTCTCAACCTTGATGAACAAGAACATAAACTGTCTGCTGCAGCTTAGTTTCTCTCCGCTGCTTTGCTTGTGTGCTACGCGTTAAACAATTTTGCAGAAAAAAGAACATATTGATTCGTTTCCCTTCTATTTTCCGCTTAAATTTAAGTCAAAATAACAAACCTTTTGAGTGTACTTTGAAGCCGTAACAATACGGTGGCATCCATTGTTGAATTTCGAATTCATATGAAGAGGTCTGTTGTACCATAGTTTCAACTAAAGAGTTATAAAGATGATTATTTTTTTACAGTTGTGTAATAAGCTTATAGTAATTGATAGCATTCTGATTTAATACTTAGGTA</genome_strand>
        <mrna_strand>CCTTTTTCCCTTTTTCTCTTCACACTTCTCAAGAAAAATAACTCCGGGAGAATTTTCCGGCAATGGCGGCCATGATCCGCCTGTTCAGATCTTCATCATCTTCATCATCTCTTATCAGTAGATCTTTATCTACAGCAGCTGCATCTGAGACAGTGAAATCCCGATCTTACCCTCATTCTACAAGTGTTGAACCCAAGGCTAAATCTGTTCAATGGGTCTTTTTGGGTTGTCCTGGTGTCGGAAAAGGTACATATGCTAGCCGTCTCTCAACCCTTTTAGGCGTTCCTCATATTGCTACTGGAGATCTTGTTCGTGATGAGTTGAAATCTTCAGGTCCTTTATCGAAACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGAGATTGTCAACCAAGGAAAATTGGTTTCAGATGAGATTATACTGAATCTACTATCCAAAAGGCTTGAGAGTGGGGAAGCTAAGGGTGAAGCTGGATTCATACTTGATGGTTTCCCTAGAACTGTGAGACAAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATTGACCGAGGTGACAGACATAGATTTGGTGGTTAATCTCAAGCTTCCAGAGCGGGTATTGGTTGAGAAATGCCTTGGCCGAAGAATCTGCAGTGAATGTGGAAAGAATTTCAACGTGGCATCTATAGATGTCGCTGGTGAAAATGGGGCTCCTAGAATCAGCATGGCTCCCCTTAATCCTCCCTCTCAGTGTATATCAAAGTTAATCACTCGAGCAGATGATACAGAAGCCATTGTGAAGGAAAGGCTCAGTATATACTGGGATAAG.........................................................................................................................................................................AGTCAGCCTGTTGAGGACTTCTACCGTAGCCAAGGTAAGTTACTGGAATTTGATTTACCGGGAGGCATCCCCGAATCATGGCCTAAGTTGCTGGAAGTTCTCAACCTTGATGAACAAGAACATAAACTGTCTGCTGCAGCTTAGTTTCTCTCCGCTGCTTTGCTTGTGTGCTACGCGTTAAACAATTTTGCAGAAAAAAGAACATATTGATTCGTTTCCCTTCTATTTTCCGCTTAAATTTAAGTCAAAATAACAAACCTTTTGAGTGTACTTTGAAGCCGTAACAATACGGTGGCATCCATTGTTGAATTTCGAATTCATATGAAGAGGTCTGTTGTACCATAGTTTCAACTAAAGAGTTATAAAGATGATTATTTTTTTACAAAAAAGTAATAAGCTTATAGTAATTGATAGCATTCTGATTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320397" ref_strand="+" ref_description="SGN-U320397        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to fmHP (GI:22902096) (Takifugu rubripes) | chr2:15647018-15648842 REVERSE | Aliases: F3G5.3, F3G5_3(evalue: 5e-57, score=217) genbank/nr: UPF0308(evalue: 4e-55, score=217)">
      <seq>aatcctctgttttacactctttacgtcaatggcgatttctctcaattctggtcttactgtggcagttagcagaagtattcgtcaaaccccacttcacaatgttaatttgacaacaaacccgtttagtttcaactgcaatttcagcttaacccccaattttctagccatttctgcctcccacaggtcctcctctgttatctacagctccagagaaactgagactccagtggtgagtgaggacaccatcaatgtgttggacgatgttcaagtatttgatctgaatggacaaggagtacctatttcggatttgtggaaagataggaaggcagttgttgcctttgctcgtcattttggatgcgtcctttgtcgcataagagctgattatcttgcagctgagaaggataagatggatgcagcaggagtcgcacttgttttgattggacctggtagtgttgatcaggccagaaaattctacgagcaaacaaagtttaaaggagaggtttatgctgatccaagctataggtcttatgaggctctgagatttgtgtctggcattacaaccacatttactcccggggcgggtctgaaaataatacaggcatacatggaaggctatagacaagattgggagctttctttcgaaaaggacaccaggacacgaggtggctggcgacaaggaggattattgttgcaggtcctggtaaaataacattacatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="59145" stop="64714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59445" g_stop="59656" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61455" g_stop="61596" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="354" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61699" g_stop="61744" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="400" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62187" g_stop="62246" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="460" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62908" g_stop="62944" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="497" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63551" g_stop="63630" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="577" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63734" g_stop="63825" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="669" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63826" i_stop="64359" i_length="534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64360" g_stop="64414" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="722" r_length="53" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U320397" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59445" e_stop="59656"/>
          <exon e_start="61455" e_stop="61596"/>
          <exon e_start="61699" e_stop="61744"/>
          <exon e_start="62187" e_stop="62246"/>
          <exon e_start="62908" e_stop="62944"/>
          <exon e_start="63551" e_stop="63630"/>
          <exon e_start="63734" e_stop="63825"/>
          <exon e_start="64360" e_stop="64414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAGGTTAGCTTATCTTCTTTGTCTTGTTATAAGTACTCCAATTTTGAGTATGTACCTCAATTCGCATTTACTGTGTCAGTTGGATACTCGAACTTATGTGTTACGTCAACATTGGGTGTCCATGAGGTATAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTATAGATGTACGCGCTCAAAGTTTGAGTGTTTAGTTGCTAGTTAACATTATGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTATATGTACACGTTCAAAGTTGGAGTGTTATGTTGCGAGATTAACACTAAGTTGAGGTGTTGTAGATGTAAACGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTTGGAGTGTTTAGTTGCTAGTTAACACTAGTTGAGGTTTTGTAGATGTACACGTTCAAAGTTGGAGTGTTTAATTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACAATTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAATTGAGGGGTGTTGTATATGTACATGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACGCACTCAAAGTTTGAGTGTTTAGTTGCCAGTTAACACTAAGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTAGATGTACGCATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAACTTGAGGTGTTGTAGATGTACACATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTTAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTAGTTACGTGCTAGGTGAGGCCAAGTTAAGTGTTTATTTATATATTATGTCTAGTGATATTATGTGAACTATAGAGGTAGTGTTGGGTGTCCACTTGACATACAACAACTTGTATCACGTATTCAAAGTTTGAGTGTTGTAGATGTCCATGAGGCACATCGGGCGAATTGGAGTGTTTAGTTGGTCTTTGAGACTATACATTGAGGTATCTAGACGTGCACGACGTGCACTTCTAAAGTTGGAGTAGTTACTTGTGAAGTCAAGAGTTGAGTGTGTGTTTATAAATTAATGACTAATGTTATTATGTGAATTAGAGAAATAGTACATTGGGTTCAAATCACAATTTCTTTCGTATATTGGATTCTGGATAGATTATTTATACATATTAAATGAATTTCTCGAAACAAATATGGGGTTTGAGCCTAAGTTGCTAGTTATGCCGAACTCATAACTAGAGGCAGACCCAAGATTTGAAGGCGACGGGAATACCACTATCTTTAGTATGTCAATTGAAGTAAAGAATCAATTAAACTCCATAATAATACGAACTGTTGTAGTCAAGACTCGAATGCAGGTTGCACATTCGCGCTCAAGGGCCAAAGTGACACGATAACCAGATGTCCCAATCCAACAGATATGTTTTAGGGGTCCTTTTATAAAATATGATAGTTCTTCAAGGTATGTTATACACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCCATAGGAAGCATTCTCTCTACCTCCCAAGGTAGAGGTGAAGTCTTCATGAACACTACCCTCCCTAGATCCCACTTGTGGGATTAGACTGAGTATGTTGTCGTTTTAATTCAGATTTATGTTATCTTCAGTGCGTTAAAAAAGTTATTCTAACCACACCGATGACTGTGCACATATCCTTAAGTTCCACCATTACTACAGTTTACATCCTTATACTGTTTTCTGTTCACAGGATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAGGTAAATAGCAGCGATGCTTCTTGCTCTGAGTTGCTTATCCACAGATTAACTTTCTTTTTTCGTTCCCCTTCGAGATATTTTTTAAATGGTTACTTATCAACAACAACAAACAAATCTTAACCAGTTATGACACCTTCCATTTCCTTGTCCTAAGTAACATCATCCCACTCTTAGAAGTTGCTTATCAACTCTCGTAATCATTTGGGTATGACGAATAAAGGCATAATTGATAAAGAAACGATCAAACTTGACCTCAGCTGACAAGTAAAAGTACTCAAACTTTGTGAGTGGAATCTAGACACCTCAACTTGGTCATAGCTGACAACTAAACGCTCCAACTTGTCCACATTGTGTCTCGTGGATACTCGACTTTGACGTGACACATACATTTTGGAGGTGTCTAGATAATCATTTTTTAAGTGGAGTGTCCAACTGGAATAACGGAGAGTTATGGTGTTAGATGTGCATACTCAAAATTGGAGTGTTACTTACCAGTTACGGCGAAGTTTGAGTCTGTTTATGTATTACGCCAAGAATAGAAGCTTTTTCTATTACAAGGATCTTCTTCGTCCTTTCTGTTTCTTGCTCTTTTATGATTTCAAGAGCTCAGTAAAGCTGGATTGAGTTATGACTTGAGTCCTCTTCTTTTTCTTTTCTCCAGGCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAGGTAAGTTTCAAATAAAAAACCTTGTGTCCGCAGTGGCTCAGTGTCTGTTACTGGACGTCTGAATATCCCATGAACTCGGTTCTAGCAATGTCCACTGATATATATGCTCCACAGGACCAGTGACCTCGCTCAATGCTATTGCACTATAAGTTACAGTTTCCCCTAAAAGAAAATTTTCAGCATTAGTAGAATTAACAATGTGAAGAACTGAGGATATAAGATATATTATATCTGATGTGTATAATTCTAAAGCTACGGGAAGGGTTAAAACAGGTAAAAATTCACAAAACGGCTAAGAGAGTTGCTACATCATTCACTACTAAAACGTACATCCATCCTCGAACATAAAGAGAAAGAAAGTACCAGGGCCTGATCATGTGATGTTATGTTCCTCTTCTATACAAATTAGAAAGATCCAGAAGACAAAAACCTGTCACGACCCAAAAAAAATCGAGAATTCATTTGTAAGACAGCTGCTAGAAGTGTTGCTAGTTTGTTACATTGGCATTCTTATTAAGTTAAAGTATAGTCTGGTTTTGTTTCAAAGCTTTCTTTGTATGCGAATTTTTCAAAAAATTACACCTGACGGAGATTCATTTATTTCAGAGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGGGTAATTCAAATTAGATTGACACTCATAAAGTGTAACATTTCCAGCTTCTCAATGTATTCTAATAGTGGTCTTGTTCATCTTTTCTTATCTACATCAAATCTAGGCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTGGTAAGTCATTTTCCTCATCTGCTATTATAATCTTCTGATTTGTTTTTCAAAGGTCTTTCGGAAACAGTCTCTCTACCTCCACGAGGTAGGGGTAAGGTCACACCCTCTCGTCCCCAAACTCCACCTAGTGGGATTACACTGGGTATGTTGCTGAATCTGTTTGCTAATAGTGCAAGTACATATCTTGTAATTGGACGAGACTTACTATTTCTAGAAGTTGCACAATTTTGATGGTTGACTCCTGATTTCCTAACACCGTATCAAGTTTGGTGTAATAAGAAAACAAGGAACAATTAGCTTATCTAAGCAATTCCGTTGTTGTAAAATCCACCTGAAGTGAATGGGGTTTTAAGCTAACATAAAAGAATTTCATCATTTCCGTTTATCTATAGGTAAACCATAAGCCATAGTTTCACTATCATTTTAGCTTATAGTTGGTATATGACATTCTTGGTTGTTCGATTCTTTATAATTCTGTGCAAAACAACACAAATGCAGTAACATGTGAAACTAATAAGCTTGTTAAATTATCAGGCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATT</genome_strand>
        <mrna_strand>AATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGG......................................................................................................ATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGG.......................................................................................................GCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAAGGAGG-ATTATTGTTGCAGGTCCTGGT-AAAATAACATTACATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320395" ref_strand="+" ref_description="SGN-U320395        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to fmHP (GI:22902096) (Takifugu rubripes) | chr2:15647018-15648842 REVERSE | Aliases: F3G5.3, F3G5_3(evalue: 3e-78, score=288) genbank/nr: UPF0308(evalue: 3e-76, score=288)">
      <seq>ttcgtcaaaccccacttcacaatgttaatttgacaacaaacccgtttagtttcaactgcaatttcagcttaacccccaattttctagccatttctgcctcccacaggtcctcctctgttatctacagctccagagaaactgagactccagtggtgagtgaggacaccatcaatgtgttggacgatgttcaagtatttgatctgaatggacaaggagtacctatttcggatttgtggaaagataggaaggcagttgttgcctttgctcgtcattttggatgcgtcctttgtcgcataagagctgattatcttgcagctgagaaggataagatggatgcagcaggagtcgcacttgttttgattggacctggtagtgttgatcaggccagaaaattctacgagcaaacaaagtttaaaggagaggtttatgctgatccaagctataggtcttatgaggctctgagatttgtgtctggcattacaaccacatttactcccggggcgggtctgaaaataatacaggcatacatggaaggctatagacaagattgggagctttctttcgaaaaggacaccaggacacgaggtggctggcgacaaggaggaattattgttgcaggtcctggtaaaaataacattacatacattcacaaggacaaagaagcaggtgatgatccagatataaaagaaatcttgaatgcttgctgtgtacaaggctaaatttaatcaatacagtctatatattatgtgtatatacagacaatttgaagagatacgtatctcgatagacacaaactagtacatgaacaatccacacttttggttcaaataagcaatactagagttattattccacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgggactaggagagaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="59222" stop="65347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59522" g_stop="59656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61455" g_stop="61596" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="277" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61699" g_stop="61744" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="323" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62187" g_stop="62246" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="383" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62908" g_stop="62944" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="420" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63551" g_stop="63630" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="500" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63734" g_stop="63825" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="592" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63826" i_stop="64359" i_length="534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64360" g_stop="64420" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="653" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64421" i_stop="64839" i_length="419">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64840" g_stop="65048" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="862" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="873" polyA_stop="903"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U320395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59522" e_stop="59656"/>
          <exon e_start="61455" e_stop="61596"/>
          <exon e_start="61699" e_stop="61744"/>
          <exon e_start="62187" e_stop="62246"/>
          <exon e_start="62908" e_stop="62944"/>
          <exon e_start="63551" e_stop="63630"/>
          <exon e_start="63734" e_stop="63825"/>
          <exon e_start="64360" e_stop="64420"/>
          <exon e_start="64840" e_stop="65048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAGGTTAGCTTATCTTCTTTGTCTTGTTATAAGTACTCCAATTTTGAGTATGTACCTCAATTCGCATTTACTGTGTCAGTTGGATACTCGAACTTATGTGTTACGTCAACATTGGGTGTCCATGAGGTATAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTATAGATGTACGCGCTCAAAGTTTGAGTGTTTAGTTGCTAGTTAACATTATGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTATATGTACACGTTCAAAGTTGGAGTGTTATGTTGCGAGATTAACACTAAGTTGAGGTGTTGTAGATGTAAACGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTTGGAGTGTTTAGTTGCTAGTTAACACTAGTTGAGGTTTTGTAGATGTACACGTTCAAAGTTGGAGTGTTTAATTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACAATTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAATTGAGGGGTGTTGTATATGTACATGTTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAAGTTGAGGTGTTGTAGATGTACGCACTCAAAGTTTGAGTGTTTAGTTGCCAGTTAACACTAAGTTGAGGTGTTGCAGATGTACACGTTCAAAGTTGGAGTCTTTAGTTGCTAGTTAACAATAAGTTGAGGTGTTGTAGATGTACGCATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTAACTTGAGGTGTTGTAGATGTACACATTCAAAGTTGGAGTGTTTAGTTGCTAGTTAACACTTAGTTGAGGTGTTGTAGATGTACACGTTCAAAGTTGGAGTAGTTACGTGCTAGGTGAGGCCAAGTTAAGTGTTTATTTATATATTATGTCTAGTGATATTATGTGAACTATAGAGGTAGTGTTGGGTGTCCACTTGACATACAACAACTTGTATCACGTATTCAAAGTTTGAGTGTTGTAGATGTCCATGAGGCACATCGGGCGAATTGGAGTGTTTAGTTGGTCTTTGAGACTATACATTGAGGTATCTAGACGTGCACGACGTGCACTTCTAAAGTTGGAGTAGTTACTTGTGAAGTCAAGAGTTGAGTGTGTGTTTATAAATTAATGACTAATGTTATTATGTGAATTAGAGAAATAGTACATTGGGTTCAAATCACAATTTCTTTCGTATATTGGATTCTGGATAGATTATTTATACATATTAAATGAATTTCTCGAAACAAATATGGGGTTTGAGCCTAAGTTGCTAGTTATGCCGAACTCATAACTAGAGGCAGACCCAAGATTTGAAGGCGACGGGAATACCACTATCTTTAGTATGTCAATTGAAGTAAAGAATCAATTAAACTCCATAATAATACGAACTGTTGTAGTCAAGACTCGAATGCAGGTTGCACATTCGCGCTCAAGGGCCAAAGTGACACGATAACCAGATGTCCCAATCCAACAGATATGTTTTAGGGGTCCTTTTATAAAATATGATAGTTCTTCAAGGTATGTTATACACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCCATAGGAAGCATTCTCTCTACCTCCCAAGGTAGAGGTGAAGTCTTCATGAACACTACCCTCCCTAGATCCCACTTGTGGGATTAGACTGAGTATGTTGTCGTTTTAATTCAGATTTATGTTATCTTCAGTGCGTTAAAAAAGTTATTCTAACCACACCGATGACTGTGCACATATCCTTAAGTTCCACCATTACTACAGTTTACATCCTTATACTGTTTTCTGTTCACAGGATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAGGTAAATAGCAGCGATGCTTCTTGCTCTGAGTTGCTTATCCACAGATTAACTTTCTTTTTTCGTTCCCCTTCGAGATATTTTTTAAATGGTTACTTATCAACAACAACAAACAAATCTTAACCAGTTATGACACCTTCCATTTCCTTGTCCTAAGTAACATCATCCCACTCTTAGAAGTTGCTTATCAACTCTCGTAATCATTTGGGTATGACGAATAAAGGCATAATTGATAAAGAAACGATCAAACTTGACCTCAGCTGACAAGTAAAAGTACTCAAACTTTGTGAGTGGAATCTAGACACCTCAACTTGGTCATAGCTGACAACTAAACGCTCCAACTTGTCCACATTGTGTCTCGTGGATACTCGACTTTGACGTGACACATACATTTTGGAGGTGTCTAGATAATCATTTTTTAAGTGGAGTGTCCAACTGGAATAACGGAGAGTTATGGTGTTAGATGTGCATACTCAAAATTGGAGTGTTACTTACCAGTTACGGCGAAGTTTGAGTCTGTTTATGTATTACGCCAAGAATAGAAGCTTTTTCTATTACAAGGATCTTCTTCGTCCTTTCTGTTTCTTGCTCTTTTATGATTTCAAGAGCTCAGTAAAGCTGGATTGAGTTATGACTTGAGTCCTCTTCTTTTTCTTTTCTCCAGGCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAGGTAAGTTTCAAATAAAAAACCTTGTGTCCGCAGTGGCTCAGTGTCTGTTACTGGACGTCTGAATATCCCATGAACTCGGTTCTAGCAATGTCCACTGATATATATGCTCCACAGGACCAGTGACCTCGCTCAATGCTATTGCACTATAAGTTACAGTTTCCCCTAAAAGAAAATTTTCAGCATTAGTAGAATTAACAATGTGAAGAACTGAGGATATAAGATATATTATATCTGATGTGTATAATTCTAAAGCTACGGGAAGGGTTAAAACAGGTAAAAATTCACAAAACGGCTAAGAGAGTTGCTACATCATTCACTACTAAAACGTACATCCATCCTCGAACATAAAGAGAAAGAAAGTACCAGGGCCTGATCATGTGATGTTATGTTCCTCTTCTATACAAATTAGAAAGATCCAGAAGACAAAAACCTGTCACGACCCAAAAAAAATCGAGAATTCATTTGTAAGACAGCTGCTAGAAGTGTTGCTAGTTTGTTACATTGGCATTCTTATTAAGTTAAAGTATAGTCTGGTTTTGTTTCAAAGCTTTCTTTGTATGCGAATTTTTCAAAAAATTACACCTGACGGAGATTCATTTATTTCAGAGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGGGTAATTCAAATTAGATTGACACTCATAAAGTGTAACATTTCCAGCTTCTCAATGTATTCTAATAGTGGTCTTGTTCATCTTTTCTTATCTACATCAAATCTAGGCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTGGTAAGTCATTTTCCTCATCTGCTATTATAATCTTCTGATTTGTTTTTCAAAGGTCTTTCGGAAACAGTCTCTCTACCTCCACGAGGTAGGGGTAAGGTCACACCCTCTCGTCCCCAAACTCCACCTAGTGGGATTACACTGGGTATGTTGCTGAATCTGTTTGCTAATAGTGCAAGTACATATCTTGTAATTGGACGAGACTTACTATTTCTAGAAGTTGCACAATTTTGATGGTTGACTCCTGATTTCCTAACACCGTATCAAGTTTGGTGTAATAAGAAAACAAGGAACAATTAGCTTATCTAAGCAATTCCGTTGTTGTAAAATCCACCTGAAGTGAATGGGGTTTTAAGCTAACATAAAAGAATTTCATCATTTCCGTTTATCTATAGGTAAACCATAAGCCATAGTTTCACTATCATTTTAGCTTATAGTTGGTATATGACATTCTTGGTTGTTCGATTCTTTATAATTCTGTGCAAAACAACACAAATGCAGTAACATGTGAAACTAATAAGCTTGTTAAATTATCAGGCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAGGTAAGTCTCCGTCCCTTCGTCTTCCCAATCTTGATACACAATTTATACTCCATTAAATAACTCGTCATTGTCTGAGAATAGCTCGAAGCTTCATGCTCGCCAATTAGTTAGTTTTCGGCTTTACTTCTCAACAGAGATTTAAGTTTCAATACATAATTAGAGTTTGAGTTTTATCAGTTTCATTCTGTATCTGTTCGCGTGGAGCTGTATTGACTCCGTTCTGATATACAGTGAACAAATACAACAGATAGAGTGAATCACTGAGTTTTTTTTAAGTAAATTATTGCTACATGTGGTAATTAACTAAACTATAGCTATGATTGATAATTAAGGCTCAAAGTTCTGCTATTTTCGAAATTTCGTCATTTTTTTAATCATATGAAACTTGGATAATTCTTGTTATTTCTTGATTGTGGCAGGACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAACAAC</genome_strand>
        <mrna_strand>TTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGG......................................................................................................ATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGG.......................................................................................................GCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320396" ref_strand="+" ref_description="SGN-U320396        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to fmHP (GI:22902096) (Takifugu rubripes) | chr2:15647018-15648842 REVERSE | Aliases: F3G5.3, F3G5_3(evalue: 2e-11, score=65.9) genbank/nr: gi|18404359|ref|NP_030274.1| expressed protein [Arabidopsis thaliana] gi|15215634|gb|AAK91362.1| At2g37240/F3G5.3 [Arabidopsis thaliana] gi|20197473|gb|AAC98045.2| expressed protein [Arabidopsis thaliana] gi|21618147|gb|AAM67197.1| unknown [Arabidopsis thaliana] gi|30102454|gb|AAP21145.1| At2g37240/F3G5.3 [Arabidopsis thaliana](evalue: 1e-09, score=65.9)">
      <seq>cacgtatctacacagtttgtccttcaaagcttgggcagatgagaaaaaatcacctagtgttttagcctccgttaggaactgaacctcagacctcatggttctcaatacacttcattgactactaatgataattaagatgtttagttttgttaataaatattagagtattgattgaaatagaaactgagactccagtggtgagtgaggacaccatcaatgtgttggacgatgttcaagtatttgatctgaatggacaaggagtacctatttcggatttgtggaaagataggaaggcagttgttgcctttgctcgtcattttgggtaatctttccatgcccttatgctctatttcttccaaaactggtaatcaaaaagcatgttattggtgaagtatgtgctacttattctagatcccgattgcagatgcgtcctttgtcgcataagagctgattatcttgcagctgagaaggtaatgcttcttcttgactacatttacgaatgttatcatgtttttcttccatgtgttctgctgaaactatcccaaagctgactaatgtatttccaggtccaaatgacttgtcttagtatccttgtttgatgttggtgagttaagtcgtgggaaatacataagttgcagtgtctactataacgtacatatcatagtttacagaccatactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="60975" stop="62257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61275" g_stop="61957" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U320396" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61275" e_stop="61957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCC</genome_strand>
        <mrna_strand>CACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAAATACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344318" ref_strand="+" ref_description="SGN-U344318        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:643609-648451 REVERSE | Aliases: F9G14.140, F9G14_140(evalue: 2e-18, score=77.4) genbank/nr: gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] (evalue: 2e-16, score=77.4)">
      <seq>gattactctcccgcccaactccttccctactccgccgccgcaccaccggcactaccgccgcaccaccgccaagcccaaacgaaagcccactcattctccgtctcatttcacttcatccatcactactcctcaatctccgctcctatcctcatttcgatgggattccgcttccgcttcagctgtaatagtcttaaatactatgctgagttggcgtctaagctagcgcaggatgggaggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="69395" stop="70333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69695" g_stop="69873" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69874" i_stop="69973" i_length="100">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.138" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69974" g_stop="70034" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="240" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U344318" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69695" e_stop="69873"/>
          <exon e_start="69974" e_stop="70034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTCTCCCGCCCAACTCCTCCCCTACTCCGCCGCCGCACCACCGTCACTACCGCCGCACCACCGCCAAGCCCAAACGAAAGCCCACTCATTCTCCGTCTCATTTCACTTCATCCATCACTACTCCTCAATCTCCGCTTCTATCCTCATTGCGATGGGATTCCGCTTCCGCCTCAGGTAAATAGCTTTGGCTAAAATCATTTGAACTATCTCCTTTAATGTAACTGAATTTCGAACTCATAAACGTCAAATTTTGGTTTCGCTTGTGTGTAGGTAGCTGTAATGGTCTTAAATACTATGCTGAGTTGGCGTCTAAGCTAGCGCAGGATGGGAGGTTT</genome_strand>
        <mrna_strand>GATTACTCTCCCGCCCAACTCCTTCCCTACTCCGCCGCCGCACCACCGGCACTACCGCCGCACCACCGCCAAGCCCAAACGAAAGCCCACTCATTCTCCGTCTCATTTCACTTCATCCATCACTACTCCTCAATCTCCGCTCCTATCCTCATTTCGATGGGATTCCGCTTCCGCTTCAG....................................................................................................CTGTAATAGTCTTAAATACTATGCTGAGTTGGCGTCTAAGCTAGCGCAGGATGGGAGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339318" ref_strand="+" ref_description="SGN-U339318        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:643609-648451 REVERSE | Aliases: F9G14.140, F9G14_140(evalue: 1e-51, score=200) genbank/nr: gi|30679784|ref|NP_195903.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|26450136|dbj|BAC42187.1| unknown protein [Arabidopsis thaliana](evalue: 8e-50, score=200)">
      <seq>ctatacaacaattatcaaggtttgcgtggaaaataaagatttcaagagtgcattttcattatttgcagcaatgaagagatatcagataaaaccaaatatggtcacatataatacacttcttagagctcgtagccgatatggatctttgcaggaggtacaacaatgcttagctatatatcaagatatgcggaaagcagggtacaaacccaacgattactatctcaagcaattaattgagcagtggtgtgaaggcgtaatacagaatgccaatcagaggaaatacaacttcagcactcgtaatagaactgatttagggcctcaaagtatgattctggagaaagttgcagaacacttgcagaaggacagtgcaaacagcatctccattaatctccgagggcttactaaggttgaagctaggaattgtggttcttggcggttttgagaatgatcagagagaagtacactgcaggagattcaatcaaagatgatgtgcaaatctttctaggagtcaaagaaagtagtatacgtgctgtcaaacaagaaagntgtcgttaaggaagcaataatacaactattgcaacatgatttgggacttgaggtaatttcagcagcatcaacaattggaaatgggataaaccatccagacaacaagcattcaaacatggaagaaaatgcagaaagagtcattctacacccaaagcgtgtactctccaacaggaaacccagtggttttgcaaaaatgaggatacttaaggagtcactgcaatcctggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="76031" stop="79576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76331" g_stop="76349" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76350" i_stop="76444" i_length="95">
            <donor d_prob="0.561" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76445" g_stop="76525" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="100" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76526" i_stop="76713" i_length="188">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76714" g_stop="76811" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="198" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76812" i_stop="78481" i_length="1670">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78482" g_stop="78689" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="406" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78690" i_stop="78772" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78773" g_stop="78833" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="469" r_length="63" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78834" i_stop="78971" i_length="138">
            <donor d_prob="0.461" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78972" g_stop="79276" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="775" r_length="306" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U339318" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76331" e_stop="76349"/>
          <exon e_start="76445" e_stop="76525"/>
          <exon e_start="76714" e_stop="76811"/>
          <exon e_start="78482" e_stop="78689"/>
          <exon e_start="78773" e_stop="78833"/>
          <exon e_start="78972" e_stop="79276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAACAATTATCAAGGTTGTATGATTGGCATATTAATTCGTGAACACTTTAGATGATGCATAGTCAAATATGATTGATTCATATATTGTTTATTCCTCTTCACTTTACAGGTTTGCGTGGAAAATAAAGATTTCAAGAGTGCATTTTCATTATTTGCAGCAATGAAGAGATATCAGATAAAACCAAATATGGTGAGTTAATTAGTTAAGCTTGCACTTCAAATGTCATCGATAAAATTTCCTCATAAAATTATTTGAATGTTTTTTTTATTTACACCCTTTGCATCGAAATGACATTTTTAATAGAACAAGTGTGATTTGGTACGTAGGTGCTTACATGTCACTTGGATCAGAGTTATAACCTCTTTAACATTTTGTAGGTCACATATAATACACTTCTTAGAGCTCGTAGCCGATATGGATCTTTGCAGGAGGTACAACAATGCTTAGCTATATATCAAGATATGCGGAAAGCAGGGTATGTAACTTGAAATCTTTTAGGCATAATGCTCCTCTTCTTATATTTGCTCCCGATATAAAGAAATAAGGTACTCTATTCCGTTACATATTGTGGAGCAGATCTGGTATCGTTCTTGAACTCTTGAATAACGTCAATAGATATTAGATAAATAGATTCCCACAATCTCACAGAGAGCTAGTCGTGGTGTAAAATGTAAATGCATCAATCTCTCTAGAGATGGAATCATAAAAGAACACTAATGAGTGCACCAGGGTTTCCTTTGATCCATCACTTCACACTGACTTAATAACACAAGAACTCCATAACCTTCTTTTTTGTCGTCTAAAGCCTTAGATAACTGGACGACTGAATACTTGCAACAAATAACCTAATAACAAAGACAAGACTCAAATATATTAAAGACTCGATAGCTTCCTCCAAACAAAACTCCAAATTCAAGAATTCTAATTGACCACCTCCATGATAATTATGAGTTAGAGGACTCTCCTCCTCTTCTAGCTCAGGGACGTATTTACCTTTTCTTTCCTTTTTTAACTTTGTCCAACCGTGACTTGAATACCATGTACTGCTCCAACATGTGTTTGTTTGTATAGCTGAGCGAGGGCGCTCTATTTCTTTCTCTTCCAATGCTTGTTCTTCTTTCTTTATGAAGATCATCAAATGCCTCAAACACATTTGATTTTCCCACATCAGCGTGATTACCTTGGCGATTGTCTAGTATCAATTCAAGAAATTTATCAGCTATGTTTTCTATACTTGTATAGCCACAAGAATATGGCCTTCCACTTGGTGAAAAGAATAGCACACCAACATTCTGCTCTGGTCAGAGTTGAATACTCATCTGCTTTCTTGAACAAGCCTTTTTTTTCTATTCGAGAAAGTAAAAGTGTGTGTTTCCTTGAACTCAATCAACTTCGTTACAATCTTTTGCCTACCCTTCGTTTTATCCATTGCAAAAACAAATAATTAAAGAAAATAAGATGTATTGGCTGAATAAGCCTGAACAATTTTGACAGGAATGCTTGTGTAATTTAAAATTAACTGTGGTCTTTTTCCCTTTGTGACGGGTTAAATGGGCAACAGAGCCTGTTCCGTACAAAGCAAAAAGAACAATGCAGTAAGACGGTGGAAATCATAAGAATTTGAGGAAGTAAACAAAGGAAAGAAAAGCTGTTCATCTTGAAGCAGTAATGATCATCTTCATAGGCCATTTTTCTAGTGCAGACTCACTCCTTGTATAGTAGTATCAAGAGAGTTCATCCTGATCACGCTACGGAAATCCAATATGGCTTATTGAACCACAACATAGTTCCCAAAAAGTATCTTTTAACGCTTAGGTCGTCTATGACTATACTTTTCCCATCAAGTTGGCTTGAAAAACATTATCAAGGGGCTTGGTGTCTGTGGAGCTTTTGACTTTGGAATTCAGTTCGTTAATTTCCATTTTGGGTGTGCATGTGGAGTGTTGATTTGTGAATGTGCGATTCAAGGGGGTCTTGGGATAAAATAGACATGCATCAGAGGTAAGTATGTGACAACCATGCTTTGGGAGGTGTAGTGAAGGATTTTGAGACAACAATCCCCTGTTGGGACGTTTTAGTTTACTTTTTTTTTTTTTTTTACTAAGAAATCAAGGAAATTTCCAGTTTATATCATAAAGATTGCAGGTACAAACCCAACGATTACTATCTCAAGCAATTAATTGAGCAGTGGTGTGAAGGCGTAATACAGAATGCCAATCAGAGGAAATACAACTTCAGCACTCGTAATAGAACTGATTTAGGGCCTCAAAGTATGATTCTGGAGAAAGTTGCAGAACACTTGCAGAAGGACAGTGCAAACAGCATCTCCATTAATCTCCGAGGGCTTACTAAGGTAAAGATTGTATCGAGCTATATATTCACAATCTCTTGTACACAACCATCTGATCATCAACTTGTTTTTTTGCATACTGACAGGTTGAAGCTAGG-ATTGTGGTTCTT-GCGGTTTTGAGAATGATCAGAGAGAAGTACACTGCAGGTGAGAAAATGGTTGAACTTATAAAACGTCTACAATTTGATTGGGGGAATGGTGCATTTCAACATTACTAACGATCCATATAGTACAAACATGCATTGCATTACAATCAATTTAAATACATTGTGGTTATCGTTGCAGGAGATTCAATCAAAGATGATGTGCAAATCTTTCTAGGAGTCAAAG-AAGTAGGTATACGTGCTGTCAAACAAGAAAG-TGTCGTTAAGGAAGCAATAATACAACTATTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATAAACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACGACC-AAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAAAAATGAGGATAACTAAGGAGTCACTGCAATCCTGGCTA</genome_strand>
        <mrna_strand>CTATACAACAATTATCAAG...............................................................................................GTTTGCGTGGAAAATAAAGATTTCAAGAGTGCATTTTCATTATTTGCAGCAATGAAGAGATATCAGATAAAACCAAATATG............................................................................................................................................................................................GTCACATATAATACACTTCTTAGAGCTCGTAGCCGATATGGATCTTTGCAGGAGGTACAACAATGCTTAGCTATATATCAAGATATGCGGAAAGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAACCCAACGATTACTATCTCAAGCAATTAATTGAGCAGTGGTGTGAAGGCGTAATACAGAATGCCAATCAGAGGAAATACAACTTCAGCACTCGTAATAGAACTGATTTAGGGCCTCAAAGTATGATTCTGGAGAAAGTTGCAGAACACTTGCAGAAGGACAGTGCAAACAGCATCTCCATTAATCTCCGAGGGCTTACTAAG...................................................................................GTTGAAGCTAGGAATTGTGGTTCTTGGCGGTTTTGAGAATGATCAGAGAGAAGTACACTGCAG..........................................................................................................................................GAGATTCAATCAAAGATGATGTGCAAATCTTTCTAGGAGTCAAAGAAAGTA-GTATACGTGCTGTCAAACAAGAAAGNTGTCGTTAAGGAAGCAATAATACAACTATTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATAAACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACACCCAAAGCGTGTACTCTCCAACAGGAAACCCAGTGGTTTTGC-AAAAATGAGGATACTTAAGGAGTCACTGCAATCCTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328830" ref_strand="+" ref_description="SGN-U328830        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gcaataatacaactattgcaacatgatttgggacttaaggtaatttcagcagcatcaacaattggaaatgggataagccatccagacaacaagcattcaaacatggaagaaaatgcagaaagagtcattctacgaccaagcgtgtactctccaacaaggaaaccagtggttttgcaaaaaatgaggataactaaggagtcactgcaatcctggctaacaagaaggttagatgcttctgtagtgcaatgatatacgaaacatgatatgtatagatttatacgaactctttcttttcgtagagttctttcatccctttaacagccgaataaacactgtatattcaatgatataccacatgctaaaaacttcacattttaccatcaaatgtaaacaaaagtaacaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="78761" stop="79770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79061" g_stop="79469" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="423"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U328830" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79061" e_stop="79469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAATACAACTATTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATAAACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACGACCAAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAAAAATGAGGATAACTAAGGAGTCACTGCAATCCTGGCTAACAAGAAGGTTAGATGCTTCTGTAGTGCAATGATATACGAAACATGATATGTATAGATTTATACGAACTCTTTCTTTTCGTAGAGTTCTTTCATCCCTTTAACAGCCGAATAAACACTGTATATTCAATGATATACCACATGCTAAAAACTTCACATTTTACCATCAAATGTAAACAAAAGTAACAAAAGAAA</genome_strand>
        <mrna_strand>GCAATAATACAACTATTGCAACATGATTTGGGACTTAAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATAAGCCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACGACCAAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAAAAATGAGGATAACTAAGGAGTCACTGCAATCCTGGCTAACAAGAAGGTTAGATGCTTCTGTAGTGCAATGATATACGAAACATGATATGTATAGATTTATACGAACTCTTTCTTTTCGTAGAGTTCTTTCATCCCTTTAACAGCCGAATAAACACTGTATATTCAATGATATACCACATGCTAAAAACTTCACATTTTACCATCAAATGTAAACAAAAGTAACAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318459" ref_strand="+" ref_description="SGN-U318459        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr2:8746992-8749430 REVERSE | Aliases: F11A3.17, F11A3_17(evalue: 6e-126, score=436) genbank/nr: gi|56202330|dbj|BAD73789.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa (japonica cultivar-group)] >gi|56201934|dbj|BAD73384.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa (japonica cultivar-group)] (evalue: 4e-127, score=443)">
      <seq>ccttctcaccagagaacccaatctccgcctccggccacactcttaatttatcgtcctagggttttcagtcgccggaaaagaaattcgattttccgacgaatctatcgaggtgattgaggatttggatgagaatacaagatgccgccaaagcaatctaaagccgatattgcaaagaagcagaaggtagttgaagacaagacgttcggtcttaagaataagaacaagtcgaagaatgttcagaaatatgttcagtctttacagcaaaatgttgtgcctaaagctgatcctaagaaacttgacgccaagaaaaagaaggaagaagagaaagctagagagaaagagcttagcgaattgttcaaagtcgctattagccaacctaaagtgcctctaggtgttgatccaaaatctattttatgtgagttctttaaggcggggcaatgtgttaagggttttaagtgcaagttctctcacgatctgaatgttcagcgaaaaggagagaagattgatattttcagcgataagcgtgatgaagatggaaaggaaacaatggacgattgggatcaagagacactggagaaggttgtggcgtcaaaaagtcaagagtataacaagaacaaaccaactgacattgtatgtaaattctttttggatgcggtggagaaaaagcagtacggttggttctgggcctgtccaaatggtaaagaatgccattacaggcatgcacttcctcctggatatattctcaagtcacaaatgaaagccttgttacaagaggaagctgacaagatgcctattgaagaagaaattgatcaacagcgtgcaaaattgactgcttcaactcccttgaccactgaattatttatggaatggaaaaaaaagaagacggaagaaagagaggccaatttggccaaacagagggcagatagagctaagaatgatcgcatgagtggtcgtgagttgttcatgtcggatgctagttggtttgtggatgatgtgggggcctatgacaagtatgatagggaagaagagtctgctgaactcccaaaggagaataaggattctgctagggaagaggcaagctcctcgacatcagcccagaagaatattcatgatggtggtgaggcttcacataaagaccaagtggatgacatttatgacgacgagatgatgatgatgactttgatgtggatgagttaaatgaactggaagctagcctttcaaaaacatcgttacaaatcaatgaacctggtagtcgcgcttgatccttgggcccaaaatctatgcacatggtatacacttatcagtgcatgcactttcatgtctacgtgatgcaaaatcatgttggcgtgcagcagcagataaaatggaatgaaatgtaagcatatccctgtcgtgacgccttaataattgatcctctattttattaggtttttacccttatttctaatgagttgtgacttctttctttccagaatttttgatgaatttaacttgtctggttgttttgctgtcacataagagagctatcctttgtattttactactactactatgctttgaagtgtgttgccttctcattgccctttataatgattctactactataggcgtagtaaaaaacttttgatcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="85024" stop="91397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85324" g_stop="85630" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85631" i_stop="86825" i_length="1195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86826" g_stop="86910" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="391" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86911" i_stop="87664" i_length="754">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87665" g_stop="87805" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="532" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87806" i_stop="87917" i_length="112">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87918" g_stop="88015" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="630" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88016" i_stop="88878" i_length="863">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88879" g_stop="89064" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="816" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89065" i_stop="89173" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89174" g_stop="89304" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="947" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89305" i_stop="89420" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89421" g_stop="89520" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1047" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89521" i_stop="90512" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90513" g_stop="91096" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1630" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1631" polyA_stop="1651"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U318459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1632</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85324" e_stop="85630"/>
          <exon e_start="86826" e_stop="86910"/>
          <exon e_start="87665" e_stop="87805"/>
          <exon e_start="87918" e_stop="88015"/>
          <exon e_start="88879" e_stop="89064"/>
          <exon e_start="89174" e_stop="89304"/>
          <exon e_start="89421" e_stop="89520"/>
          <exon e_start="90513" e_stop="91096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCACACAGAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAGGTACCTGCTAATCTCCTTTTTTTATTTTTGGGTCTTCTTTTGGTTTTATGTTTTTTTTGGTGAATATTTAGAAATTGAATTGAGTGGAGAGGATTCATGTAGCTGACTCTAATTAGCCTTTTGATTTGAATGTAGTTGTGTTATTACTTTTATGTGATTTTTTCCGACAGATATGAAGGAAGAGGCAATGATATAACTATTCGAACTTAAATAGAGAACCGAGGATTCATATAGTTTAAAGCAATTAGCTTTTTGGATTGAGTAAGATTGCTTATTATTTTTGTGAGAGTTTTTCGATAGATATACTGGAGGCATATAGCTGTTTGAGCTCAAATAGAGTACTGAGGATTCATGTAGCTGAAGACAGTTAGCCTTTTGAGTTGTGTGTAGTTGTGTTATTAATTTTATGTGATTTTTCTATACAGGAGGCATATAGTGTTCAATTAGCTTTTTGATTTGAGTATAGTTGTGTTATTATTTTTGTGTAATTTTCCCGATAGATATACAGGAGGCATGTAGCTATTCGATCTCAAATAGAGTTTCGAGGATTTATGTAGCTGAAAGCAATTAACTTTTTGATTTGAGTATAATTGTGTTATTATTTTTTTTTCCCCGATAGTTATGCAGGTTGAGGCATATAGCTGTTTGAGCTCAAATAGAGCATCGAGGATTCATGTAACTGAAAGCAATTAGCTTTTTGATTTGAGGGTAGTTGTGTTATTATTTGTGTGATTTTTCTGATAGATATACAAGAGGCATATAGCTGACCTCAACTAGCTTGAATTTGAGGTGTAATTATGGTTCATTCTCGCATTGTGTTATTATGTATATAACTGATAGAGAGGACAATGTAGTCATGTAGCCGAGCGACTAGTTTGGATTGACACATACTTGTGTTTTGTTCTTTTTGTGTAATAGTTCTCCAACTGAAATAGGGCAGGTCGTTTCATTGTATATCCTATTCTAGTTAGATTCTGTTTGAGACATAGTTGTTTTTGTACAATACATACATTCCTCTGTTTTTAAGCCCAAACCGTGCAGGATGAATACAGACAAGTGGCATGTGTGGCTATTTCACGCCCGAGTGGATGAAATGAATATAGAAGATTATATAGTTAATCCTGTTGTTACATTATTTTTCTATGTTTTTTTTTGCATATACATTTATTGACATTTAAGCTTAATTTTGTCACAGAAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAGGTATTCTTCTTCTTTTGATTGATTTCTGTGTTGTCTTATTTCTGTGTCTCAATATTTTTTTAGTATGAAGCAGCGTCAATGTTAAAAAGTCACTGCAGCTAGTTGGATTGAAACAATTGGGAATATAGTGTAGGAAGACTTCGGGGCAATTATCTGCTTTCTTCTATATCAAACTGGGTCTATTGAAGAATTACAAACTGGACCTTAAATCTTTTGCCAGTTTTTGTAAAATTGATAAACTTTTGATATTTTATTATGGAAATTCAAAATATATCTTAATAGTAGCTTGTTAATTTATTTCAAGAGACCCTTTTCATTGTTCATAGTTCATTATCATCCCCTTATCAGTAGTGCACCAAGGGTGTGACCTAGTGGTCAATTAAGTATGAATCATGAGTCTTAGACAGAAACACTAGGTGATTTTCTTCCATGTGTCCTAGCCTCTTAGGCTTGGTGGATAGAGGAGGTATCCTGTCTTTCCCCTTTCCAGAAATTCATAGCATTATTTTCTGTTCTTTATTGATAAATTATTCATTAGAACAGTTATTAGAAATGTGGAACTGGTTGAGGTAGGCGCAAGCTTCCCCGGCCACCATGTTATTTAAAAAATACTCTCTTATAGGTGGTAGTTTGTTTTATTTCACTTACTACAAACTCTCTCTTGCATTAAAGATTTGGTGTTATTTCAATCTTCATACAAAATGTTGCTGCAAAATTTATTATATATTTATGAATGCTGGGAATTTGTGTTCAGGTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAGGTGGTTAAGCAACATTAACATTTGATATTTTGCATAAACTTTTCTTTCTCATGTGATAATATTTTACAATGGTTTTAGTGTTTATTGACTGGCATTTCTTGTCTAAAACAAGATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATTGTAAGCGTTGTCCTTTTCCATAATATACCTTGTACAGTACATACTACACAATATTTTCTTATTGCTAGAGTTCAGTAGAAGTACCCTTTTTTCACAAAAAGATGGATCCCGGGGATTTTTTTCAATGGTAGCACACTAGCACAGTTCAATGTGTGTATTGTGAGTGTACATATAGTTTCAAAGCTTGCTGGACGAGCGCACATCATAATTTTGAACCTTGCCAGACATGATGAAACCCAAGTGGGAGAGCGGGAGAGGGATAGGTCCATGCTCCCCGCAGTGTCGAACAGGTTAAAATAGGACGACCTTGAATCTTGGTTGTGCAGAATGCATGCAATATTATTTTACATATTTGTGGACATTGGGAATTGGGAAATAAATTTCTGAGCTAGCCCTCCATTTAAGTGTACTTATTATTTTGATTTTCCATTGCATGGAGCATGGTATAATGATATGCATTTTATTGGTTGGACATTGTAACCATGACCATATTCCCTCATTTTGAGGTGTATTAATCTACTTCCATTTTTGTCTAAATTTATCACTTGAAAATTTGTATATTGTTGCAACAAATTACTACTCTATCCCAGTTTATTTGGCTTTCTTTTCTTTTCTGTTCTTCCCAAGAAAAAAGTTGCACCTTTCATCCCCAGAAACTATTGACTCATTACAACACTCATTTTCTGCTACTGTTGCCTTAACTGGATAGGAAACCAGGGTACTTTTGGCGTTTTATGCATATTTAGTGTATGTGTCTATAGTCTTAATTTCCCCCTTTAAAACTCCTCCTCCAGTCAAATATTGCCAAACATGAATGCAGTGCTCGTTTCATAAATCAAGCTTATGATTTGGTTTATATGCAGGTATGTAAATTCTTTTTGGATGCTGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAATGAAAGCCTTGTTACAAGAGGAAGCTGACAAGATGCCTATTGAAGAAGAAATTGATCAACAGGTGACCACACTATCTTAGTTTTCATATTGCCAACTATTGATAGCCACTAAGTTTTTCTAAATATGCTCATTAGTTGAACAACTTTACATGTTCTCTGTTCTGCCTGCAGCGTGCAAAATTGACTGCTTCAACTCCCTTGACCACTGAATTATTTATGGAATGGAAAAAAAAGAAGACGGAAGAAAGAGAGGCCAATTTGGCCAAACAGAGGGCAGATAGAGCTAAGAATGATCGCATGAGGTATCATTCTTTGCACTCCTTTTTTCTCTAAACAATATGTGCTCATCAGTTGGGAAAAGCTCTTTTCGTGGACGCATATACTTATTGGGGGGTATCTTATGCTCACTTTCTTGCAGTGGTCGTGAGTTGTTCATGTCGGATGCTAGTTGGTTTGTGGATGATGTGGGGGCCTATGACAAGTATGATAGGGAAGAAGAGTCTGCTGAACTCCCAAAGGTGAATATGTTATGATCAATCCTCTGTGCTTTATATATCCTTTGTTGGATTGTTTTGAGCATTCAAGATTTTTCACTGTCCACTGGTCACTGTCATAGATCTACATTACTGCATTACCTAGGATAGCCACAATGCCGGGGACTGAGCAAATATGCTGTGTAAGAGAGCAAAGAGTAGAGCACAAAAGACAACATTACATAATGCTCTGTTAACTTTTAGAAATTCCCATGTGAGATCTTTGTAGATTGTTTTCATCATGAATTTCTTCATTGATTTCTCATCTATCTCGGGAGGAAGTCTTAGTTAGATTCACTTTCTAGTACTGTTTCTTCACATGTTCTTTTAAAAGGCACTTGTGATTTTCTTCCTTTTGGGACTTGAATGTAAAAGGTTGATGCAGTACATGGCTTCACCCTTTTGCTAAACTTTTTACAATTATGTTGTGTAAAAACTGCGCAAGATTTTTCAGAGTTAAATATTTTGAGCTAAGTGATGGGGGTTGCACTTGGCAAAGATTGGGTCTTGCATTAAAAAAATTGTTCCATTTAAAACAGTATGCAGATTAGATGGACTTCTAACTTCTAATATGCTGAATGGAGCACAAAATGGAAGACTAAAGCATCTACTTGAAAACGTTTACTTAACCAAATATCTTATTGATCATAGAAGAGGTAAATTTTGCTTGCTAGGGCGGTGGTTGGTCTATGAAAGTGTAAACATTATTAGAAAGAGAAATGATAATCTAGTTGTGTACGTATGGGTAGTTGCAGTGGTTTTCCGTTGTGAGTCAACTAAAGAAGCTACGCCAAGTAACCAATGATCCCCTGGTTTGCACGTTTGACAAAGCATGATATTGATGTAATGTGTTTGTGCTTCCTTAAAAAAAAAAAAACAAAGCGACTATTGCCATGTGCATTTGTTGTGCAGTGCTGTTAGTTACGCACAAAAGGGCCTGCATATCATTTTCTAAGTAAACTACATTTCCTTTACAGGAGAATAAGGATTCTGCTAGGGAAGAGGCAAGCTCCTCGACATCAGCCCAGAAGAATATTCATGATGGTGGTGAGGCTTCACATAAAGACCAAGTGGATGACATTTATGACGACGACGATGATGATGATGACTTTGATGTGGATGAGTTAAATGAACTGGAAGCTAGCCTTTCAAAAACATCGTTACAAATCAATGAACCTGGTAGTCGCGCTTGATCCTTGGGCCCAAAATCTATGCACATGGTATACACTTATCAGTGCATGCACTTTCATGTCTACGTGATGCAAAATCATGTTGGCGTGCAGCAGCAGATAAAATGGAATGAAATGTAAGCATATCCCTGTCGTGACGCCTTAATAATTGATCCTCTATTTTATTAGGTTTTTACCCTTATTTCTAATGAGTTGTGACTTCTTTCTTTCCAGAATTTTTGATGAATTTAACTTGTCTGGTTGTTTTGCTGTCACATAAGAGAGCTATCCTTTGTATTTTACTACTACTACTATGCTTTGAAGTGTGTTGCCTTCTCATTGCCCTTTATAATGATTCTACTACTATAGGCGTAGTAAAAAACTTTTGATCG</genome_strand>
        <mrna_strand>CCTTCTCAC-CAGAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAG................................................................................................................ATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAAATTCTTTTTGGATGCGGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAATGAAAGCCTTGTTACAAGAGGAAGCTGACAAGATGCCTATTGAAGAAGAAATTGATCAACAG.............................................................................................................CGTGCAAAATTGACTGCTTCAACTCCCTTGACCACTGAATTATTTATGGAATGGAAAAAAAAGAAGACGGAAGAAAGAGAGGCCAATTTGGCCAAACAGAGGGCAGATAGAGCTAAGAATGATCGCATGAG....................................................................................................................TGGTCGTGAGTTGTTCATGTCGGATGCTAGTTGGTTTGTGGATGATGTGGGGGCCTATGACAAGTATGATAGGGAAGAAGAGTCTGCTGAACTCCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATAAGGATTCTGCTAGGGAAGAGGCAAGCTCCTCGACATCAGCCCAGAAGAATATTCATGATGGTGGTGAGGCTTCACATAAAGACCAAGTGGATGACATTTATGACGACGA-GATGATGATGATGACTTTGATGTGGATGAGTTAAATGAACTGGAAGCTAGCCTTTCAAAAACATCGTTACAAATCAATGAACCTGGTAGTCGCGCTTGATCCTTGGGCCCAAAATCTATGCACATGGTATACACTTATCAGTGCATGCACTTTCATGTCTACGTGATGCAAAATCATGTTGGCGTGCAGCAGCAGATAAAATGGAATGAAATGTAAGCATATCCCTGTCGTGACGCCTTAATAATTGATCCTCTATTTTATTAGGTTTTTACCCTTATTTCTAATGAGTTGTGACTTCTTTCTTTCCAGAATTTTTGATGAATTTAACTTGTCTGGTTGTTTTGCTGTCACATAAGAGAGCTATCCTTTGTATTTTACTACTACTACTATGCTTTGAAGTGTGTTGCCTTCTCATTGCCCTTTATAATGATTCTACTACTATAGGCGTAGTAAAAAACTTTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314079" ref_strand="+" ref_description="SGN-U314079        Tomato 200607 #1 [46 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L4/L1 (RPL4A), strong similarity to 60S ribosomal protein L1 GB:P49691 | chr3:2953748-2955718 FORWARD | Aliases: F11F8.22(evalue: 1e-167, score=586) genbank/nr: gi|77999245|gb|ABB16969.1| unknown [Solanum tuberosum] (evalue: 0, score=694)">
      <seq>gattttctctttaaggtttcaattctaccgaaaaaccctagcagcccccccccccctacccctgcaatggccaccgctgccgccatcccaaccaccaccgtgcaaagcctggaaaatgatatggccactgacagcgccgccgttccccttcccgccgtcatgaaggcgccgatccgtccagatgtagtcacctatgtccactccaacatctccaaaaacgctcggcaaccgtatgcagtgtcgaggaaagctggtcatcagacctctgctgagtcatggggtaccggacgtgctgtgtcacgtatccctcgtgttcctggtggtggtactcaccgtgctggacagggagctttcggtaacatgtgtcgtggtggacggatgttcgctccgactcagacctggcgccgatggcataggaagatccctgttaaccagaaaaggtatgctgttgcttcagctattgctgcatcttccgttccttcattggttctcgctcgtggtcaccgtattgaatcggtccctgagttacctctcgttgtttctgattcaattgagggtattgagaagactagcgttgctatcaaagctttgaagcaaattggtgcttacccagatgctgagaaagctaaggatagccatgctattcgtcctggaaagggtaaaatgcgtaaccgtaggtacatttctcgaaaaggtccattgattgtgtatggaactgaaggagctaagcttgtgaaggcattcaggaacattcctggtgttgaaatctgccatgttgatcgtttgaatctgctcaagcttgctccaggtggtcaccttggtaggtttattatctggaccaaatgtgcttacgagaaattagatgccatttatggtacattcgataagccatcactggagaagaagggatatttgttgccaaggccaaagatggttaatgctgatcttgccaggattatcaattctgatgaggtgcagtctgttgttagaccaatcaagaaggatgttaacaagagggcaactttgaagaagaatccattgaagaacttgaacgttttgctgaagctcaatccttatgcaaagactgccaggaggatgtcccttttggccgaggcacagcgtgtcaaggccaagaaggagaagctcgacaagaagagacatcaaattacaaaggaggaggcatcagctatcaagggtgcaagtcattcatggtacaagactatgatctcagattccgattatgcagagttcgacaacttcacaaagtggctcggagtttctcagtaaaggaacttttcttttgtgaactcatgttagaaagttttttgtttagtctgctgttttgttcccaagacatgaaagatactgagtgggaggaaaactacggcctcgttgcctggcttttccttgcctacattttgagatttcattttagcgtcgagtattacttcatatggtatggtattaaggattttgatggaatagtttgtttttgataaaaaaataaaaaaaattgcattgtttgatatagaatgatgatgttgttctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="100710" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101009" g_stop="102181" g_length="1173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1173" r_length="1173" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102182" i_stop="103201" i_length="1020">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103202" g_stop="103526" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1174" r_stop="1498" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1550" polyA_stop="1561"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U314079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1498</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101009" e_stop="102181"/>
          <exon e_start="103202" e_stop="103526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTCTTTAAGGTTTCAATTCTACCGAAAAACCCTAGCAGCCCCCCCCCCCCTACCCCTGCAATGGCCACCGCTGCCGCCATCCCAACCACCACCGTGCAAAGCCTGGAAAATGATATGGCCACTGACAGCGCCGCCGTTCCCCTTCCCGCCGTCATGAAGGCGCCGATCCGTCCAGATGTAGTCACCTATGTCCACTCCAACATCTCCAAAAACGCTCGGCAACCGTATGCAGTGTCGAGGAAAGCTGGTCATCAGACCTCTGCTGAGTCATGGGGTACCGGACGTGCTGTGTCACGTATCCCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGACAGGGAGCTTTCGGTAACATGTGTCGTGGTGGACGGATGTTCGCTCCGACTCAGACCTGGCGCCGATGGCATAGGAAGATCCCTGTTAACCAGAAAAGGTATGCTGTTGCTTCAGCTATTGCTGCATCTTCCGTTCCTTCATTGGTTCTCGCTCGTGGTCACCGTATTGAATCGGTCCCTGAGTTACCTCTCGTTGTTTCTGATTCAATTGAGGGTATTGAGAAGACTAGCGTTGCTATCAAAGCTTTGAAGCAAATTGGTGCTTACCCAGATGCTGAGAAAGCTAAGGATAGCCATGCTATTCGTCCTGGAAAGGGTAAAATGCGTAACCGTAGGTACATTTCTCGTAAAGGTCCATTGATTGTGTATGGAACTGAAGGAGCTAAGCTTGTGAAGGCATTCAGGAACATTCCTGGTGTTGAAATCTGCCATGTTGATCGTTTGAATCTGCTCAAGCTTGCTCCAGGTGGTCACCTTGGTAGGTTTATTATCTGGACCAAATGTGCTTACGAGAAATTAGATGCCATTTATGGTACATTCGATAAGCCATCACTGGAGAAGAAGGGATATTTGTTGCCAAGGCCAAAGATGGTTAATGCTGATCTTGCCAGGATTATCAATTCTGATGAGGTGCAGTCTGTTGTTAGACCAATCAAGAAGGATGTTAACAAGAGGGCAACTTTGAAGAAGAATCCATTGAAGAACTTGAACGTTTTGCTGAAGCTCAATCCTTATGCAAAGACTGCCAGGAGGATGTCCCTTTTGGCCGAGGCACAGCGTGTCAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGACATCAAATTACAAAGGTATAATCTTTAGAACTTTTGCCTAATCTTATAACCTGCGATAATCTAATGCATACGTTCTGTCATAGTTAAATAATTAATTGCAACTGTTTGTTCATAGGATCATGTTAAACTAGTTAAGAAGTGAATCATTAAAGAATGAAAACTTGCCTATAGAGTTGGTTTAGTATTAAAGTAGATAATGGAGGAGTACTGATTAATAATGGTTCTAGCTTTTAGAATTTCTGAATCTATTAGCTGTGCCACCCAATTGTAAGAAATATACAACTGTTTTTGTATATGGCAAAACTTAGCTATTAATATGATTGTTTATGTTGATGAGATTTCATTTGGTTCAGTTGTATTCTGCTTCTTATAGTACGTCGCTTAAATTTGCTAAGAAGATGCTCTAGTATAGGAATTGGTTTGGTTATGTTATGCACCGTTTAGTATGTCACTTGATGGTGCTAAGAAGATGCTTATTACTTTTGTAGTCATATAAGTATAGGGATTGGTTCAGTCGTGTTCTATGTGTTCCGGTTGTTATATTATGTTACTTGACGGTGCTAAGAAGATACTTATTACTATAGTAGTGATACAAGTATAGGGAAGTTATCTTTTTTGGGCTTATAGCTTAAGATCAAGTGTTACATGCATTAGAAGCTTCAAGCAAAGCTGTTTGAACTGTGTTTGGTAATTATGTGAATTTGTTCAAGTGTGGAGAAGTTTCTTAGATGCTTGGGAGAATAGAAATTGGTATTTAGATAGTAATACAGATGTTGCTTTACTGTGTTATTTTGTGGCCACATATGTTAGTTTCTCTTATGCTCGAGAAGCTCCTTTATCATGTTTATTTTCTTGTACAAGTATGGTGAATCATAAGATTACACTTGCATAGCTCTTTGTACTAAATAACATCTTATAGGTGTCTCCCATTTTTGTGTCCTCTATAAAAAACATTAGTGAAACTGTTCATAAAATTTCTGAGCTGTATCATGCTACAACTTCCGCTGTTTTCTTGATTCCATATTTTTGTTGCAGGAGGAGGCATCAGCTATCAAGGGTGCAAGTCATTCATGGTACAAGACTATGATCTCAGATTCCGATTATGCAGAGTTCGACAACTTCACAAAGTGGCTCGGAGTTTCTCAGTAAAGGAACTTTTCTTTTGTGAACTCATGTTAGAAAGTTTTTTGTTTAGTCTGCTGTTTTGTTCCCAAGACATGAAAGATACTGAGTGGGAGGAAAACTACGGCCTCGTTGCCTGGCTTTTCCTTGCCTACATTTTGAGATTTCATTTTAGCGTCGAGTATTACTTCATATGGTATGGTATTAAGGATTTTGATGGAATAGTTTGTTTTTGATG</genome_strand>
        <mrna_strand>GATTTTCTCTTTAAGGTTTCAATTCTACCGAAAAACCCTAGCAGCCCCCCCCCCCCTACCCCTGCAATGGCCACCGCTGCCGCCATCCCAACCACCACCGTGCAAAGCCTGGAAAATGATATGGCCACTGACAGCGCCGCCGTTCCCCTTCCCGCCGTCATGAAGGCGCCGATCCGTCCAGATGTAGTCACCTATGTCCACTCCAACATCTCCAAAAACGCTCGGCAACCGTATGCAGTGTCGAGGAAAGCTGGTCATCAGACCTCTGCTGAGTCATGGGGTACCGGACGTGCTGTGTCACGTATCCCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGACAGGGAGCTTTCGGTAACATGTGTCGTGGTGGACGGATGTTCGCTCCGACTCAGACCTGGCGCCGATGGCATAGGAAGATCCCTGTTAACCAGAAAAGGTATGCTGTTGCTTCAGCTATTGCTGCATCTTCCGTTCCTTCATTGGTTCTCGCTCGTGGTCACCGTATTGAATCGGTCCCTGAGTTACCTCTCGTTGTTTCTGATTCAATTGAGGGTATTGAGAAGACTAGCGTTGCTATCAAAGCTTTGAAGCAAATTGGTGCTTACCCAGATGCTGAGAAAGCTAAGGATAGCCATGCTATTCGTCCTGGAAAGGGTAAAATGCGTAACCGTAGGTACATTTCTCGAAAAGGTCCATTGATTGTGTATGGAACTGAAGGAGCTAAGCTTGTGAAGGCATTCAGGAACATTCCTGGTGTTGAAATCTGCCATGTTGATCGTTTGAATCTGCTCAAGCTTGCTCCAGGTGGTCACCTTGGTAGGTTTATTATCTGGACCAAATGTGCTTACGAGAAATTAGATGCCATTTATGGTACATTCGATAAGCCATCACTGGAGAAGAAGGGATATTTGTTGCCAAGGCCAAAGATGGTTAATGCTGATCTTGCCAGGATTATCAATTCTGATGAGGTGCAGTCTGTTGTTAGACCAATCAAGAAGGATGTTAACAAGAGGGCAACTTTGAAGAAGAATCCATTGAAGAACTTGAACGTTTTGCTGAAGCTCAATCCTTATGCAAAGACTGCCAGGAGGATGTCCCTTTTGGCCGAGGCACAGCGTGTCAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGACATCAAATTACAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCATCAGCTATCAAGGGTGCAAGTCATTCATGGTACAAGACTATGATCTCAGATTCCGATTATGCAGAGTTCGACAACTTCACAAAGTGGCTCGGAGTTTCTCAGTAAAGGAACTTTTCTTTTGTGAACTCATGTTAGAAAGTTTTTTGTTTAGTCTGCTGTTTTGTTCCCAAGACATGAAAGATACTGAGTGGGAGGAAAACTACGGCCTCGTTGCCTGGCTTTTCCTTGCCTACATTTTGAGATTTCATTTTAGCGTCGAGTATTACTTCATATGGTATGGTATTAAGGATTTTGATGGAATAGTTTGTTTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315704" ref_strand="+" ref_description="SGN-U315704        Tomato 200607 #1 [37 ESTs aligned] arabidopsis/peptide: AT3G09640.1 | Symbol: None | L-ascorbate peroxidase 1b (APX1b), identical to ascorbate peroxidase (Arabidopsis thaliana) gi:555576:emb:CAA56340; | chr3:2956306-2958168 FORWARD | Aliases: F11F8.23 (evalue: 2e-109, score=392) genbank/nr: gi|5257552|gb|AAD41405.1| cytosolic ascorbate peroxidase [Fragaria x ananassa] >gi|2738949|gb|AAB94574.1| cytosolic ascorbate peroxidase [Fragaria x ananassa] (evalue: 3e-109, score=398)">
      <seq>atttttgaatttgctttaaaagatttggaaatcgacgtttgatcggagaagaaatggtgaagtgttatccgacggtgagcgaagagtatcaaaaagcagttgaaaaatgtaagaggaagctcagaggacttatcgccgagaagaattgtgctccgattatgctgagattagcatggcattcagcagggacatatgatgtcaaaaccaaaactggtggtccatttggaacaatcaggcacccgaatgaacttaaacatggagctaacaatggtcttgatattgctgttcgacttttggagccgatcaaggaacagttcccaatcctatcctacgctgacttttatcagttggctggagtagttgctgttgaagttacgggaggccccgatattccttttcatcctgggagacaggacaagacagaaccacctccagaaggccgcttgcctgacgccaccaaaggctcagatcatctgagggaggtttttggacacatgggattgagtgataaagacattgttgctttatctggtggtcacactctgggaaggtgccacaaagaacgctcaggatttgagggagcatggaccaacaaccctctcatatttgacaattcctatttcaaggagcttttgagtggagagaaagaaggtctcctccagctaccatcagacaaagcactcttagaagatccagtcttccgccctctagtcgagaaatatgctgcagatgaagatgcattctttgctgattatgctgaagctcatttgaagctctcggagctcggatttgcagatgctgagtaaggtgtggtgagaaagttgtttcaataatctctggagatcagtctggttcttccaatttttcatttgtactatttgtgtatttaaaactttaaaagtctaaaaaccagctttacatatattatatgattgaagaatattgtatggctattacataagtcttgtaataatgcaacttttgtgtctttatgtttgttgctagtatatacaatatattaagtaatggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="117513" stop="121947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117794" g_stop="117964" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117965" i_stop="119307" i_length="1343">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119308" g_stop="119482" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="347" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119483" i_stop="119569" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119570" g_stop="119635" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="413" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119636" i_stop="120319" i_length="684">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120320" g_stop="120368" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="462" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120369" i_stop="120456" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120457" g_stop="120539" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="545" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120540" i_stop="120656" i_length="117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120657" g_stop="120736" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="625" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120737" i_stop="120860" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120861" g_stop="120963" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="728" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120964" i_stop="121141" i_length="178">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121142" g_stop="121200" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="787" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="121201" i_stop="121398" i_length="198">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="121399" g_stop="121647" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1036" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1037" polyA_stop="1065"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U315704" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117794" e_stop="117964"/>
          <exon e_start="119308" e_stop="119482"/>
          <exon e_start="119570" e_stop="119635"/>
          <exon e_start="120320" e_stop="120368"/>
          <exon e_start="120457" e_stop="120539"/>
          <exon e_start="120657" e_stop="120736"/>
          <exon e_start="120861" e_stop="120963"/>
          <exon e_start="121142" e_stop="121200"/>
          <exon e_start="121399" e_stop="121647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAATTT-TTTTTGTAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGCGTAAACTTTCTTTTTCCTCTCTTTTTATGTGCTTATGTTTATTGATTTCTCTGTTTCGTAGGCGGATTCAGAAATTAAGCTCGAACTTGTTTGGCCTAGCTGTGTTTTTCCAGAATTTGGAAGCTATAAATTTAAAATCCTAGCTCTGCCTCGAGTCGAGTCTCATATAGGTAAATTGTGGTTACTAGGAAATCTGGAAATTATAAATTTCAAATTTTAGCTTGGATTAGTAATCAACTACGATAAATTTGAATGCGCTACGTATGAATTTCCATGATAAGCGAAATTAGTACTCTAATATGAAGAATAAGACAAGTAAAATGTTGTTGGGAAAGATACTATAGTACAATATTGATTTAAGACTAGAATTACGAAGGTTTGTGGCAAATCACTGTCTTGGAAGCGATTTTGGCCCCATTCCGGTGCAAATTCTTGTAGCCTATAGCTCTCCAAGGTTCCATAGTTACTCTCAAACACGTGCACACGTGCATTCATGACTGAAAGTGGTGTAGTATGATATGAAATATTTTAAGAGTAGGAAAGGAGGAAGATGTTTTATTTTTTGGCGGTATCGCATAATGTTCACAAAAGGCGTGCTTTTATGGGATATTTCAAAAGAGGAGTTATTGTAAAGACAAGAGTTAAATTTGAGAAACGCGTTGTGAATGTAAATGACATTGAAAGCCATTGCATCACATTTCATAGAAACTCTTCTTTAATTTCGGAACGGAGATGTTCTCCTCTTTGTAATGTACTTTGCTTTGTGTTCTTTGCATTACACAAAATGAATAAAGGTAGAATTAATTTTACATATGTATCAGCAGATTAAATTATGAATGTGTAAAAACCGTTACATTGTTGATGTTTATAAGTTCCCTAACTTCAACTGGAGACCGGCGTGATGCATAATTTTACTGTCGGTATATATAAGTTAAATCCATTAAAATTTTAGGAATGTGCAAACTCATAAATTTAAGCCTAACAGAAATGTTACAATATCTGTTCATTTACCTGTCCAGATGGTCTTCGTATAGAGGTTCTTGAGTATAGTACTTGTCAGTACTAGAGTCAGAATTTGAAGAAACCAATGGGATTCAAAATTTACTATATATATATATATAGAAGATAATTTTGATCTTATATATATGGTCTTCGACCATGAATTCGGTTACGGTAGTCTGGCTCAGCCCTTGGTACTAGTCGTAATGTGCTTTGTTTTCCAGAATTTAACTTGTGTGGACGCCGAAGTCCAAAGTTGACACAAAACAAAAAAGGCTCGTGTAGTTTGTTAAGAATTTTTTACATGATGGATGCCTCTAAGTTTTGGATTACTTCGGTTTCAGATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAGGTATAAGGCAATTTAAGCCTCGGGACAAAATAATTTCTTATTGTGTGACTTCATTTAACTGTTGCCTTTTCTGATTACAAACTGAAGTTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAGGTAATTAGTAACATTAATTTTCATTTCTCGCCTCGCAAGAATGTTCTTCTGTATATTAAAAGAGTGTTACTTACATACCGATCTGTTATCTCTCTCTTGCTGGATAGCCAATTTGAAGATGCAATACATGGTTTCATCTATTTCCATGTGTTTTGTAGTTTACTTTTCACAAAAAAAAAATTTAATTCTAAAATTTACAGTATTACTGATATAAGTGCTCTGCCTATTACTTCTCTTCGGTGTTGTTTTTCCTTTTCGTATTAGTTGTCATGTTTTCTTCACTACAATTTTTCCTTTTCATTACTACTTTTTTTTACTTCACTTGAGCTGAGGGTCTCTCAGAAATAACTTCTCTTCCTACGTATACTAAAATTATACCTCCATCCAATATTACACCATCATCACTAGATTGACATTTAAAAATAATCTTTTGGGGATTGTGTACATAGTCGTCTTCTTTCCAAAGAAAAGGTTTATTGAATTTATAGCATGTAAGAAAGCTGAATATTCTGGACTTGAAATATAGGAACTTGATCACTAGGATTGGCTCCTTGTTGTCAAGAATATTATGTTACAATGCAATACGGATTTGAAATGTTAGGAAAATATAGGCAACTTAGAACTTGTATACGGATTAATTTCATCGGCTAATGAAAATGACAATTGTTGGTTATTACTTTCCAGGACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAGGTTACTGCTTGCTTCTTTAACTCTTTAAGTAGCTCAAACTACATGGCCTCTCTGAAAAATCGAGCTGTTGTTTTTTCGTTTTCTTCAGGCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTGGTAAGCACGCAAAAAACATTGATATAATGTTGCACTTACTCTTTGAAAATGGTGCCTTTAGAATGTATATTTCCGTTGTATTTTACTCGGTATCATGGTTTCTTGATTTTTAATCAGGGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAAGTAAGTTTACGCTCCTGTAGAAATTCCTAATTAACTTTGCGTCCTGAATTAAAGTTTGCACTTACTAATTGCGGAAGCTCATATGAAATTTTACGCTGTGTTGTAACTTCTCTTTGAATGTCAGGGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCAGTACGTACACCATATTTTGATTGTTCTTTCAGGACCATATTTACGTACCATTTTCTGGCGTAGACATATACTTGAGTGCGATAAACTGAAAGTTAAATGATCATTCTTAATGCATAACATTTATATGATGATCCTCTTTGTCTAATTAGATGAAAATGAAAATGCCTTTGTTCTACAGGATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGGGTAAGTTATCTTTGTTCTACATCCCTCACTAGCTAGCCATATCTATCGATAAATAGGATCAGCGACTGATTCTGCTGTTTATCAAATACTTGTTCATAATAACTTACTTATTATAAGTGGCATAAGTCGTCTATATATGTTTAATATCGACAGTATATAAAACTTAAACTCGTTTGTTTTTCGTGCACTCTAATGCAGATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAATA</genome_strand>
        <mrna_strand>ATTTTTGAATTTGCTTTAAAAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAG.......................................................................................TTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAG........................................................................................GCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTG.....................................................................................................................GGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAA............................................................................................................................GGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCA..................................................................................................................................................................................GATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGG......................................................................................................................................................................................................ATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331813" ref_strand="+" ref_description="SGN-U331813        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G37050.3 | Symbol: None | similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g67720.1); similar to putative light repressible receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD87040.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat (InterPro:IPR001611) | chr2:15576065-15580805 FORWARD | Aliases: None (evalue: 3e-53, score=195) genbank/nr: kinase(evalue: 2e-51, score=195)">
      <seq>ctgatgaccccatttgatagaatatgggcgtctgacaccctaaaaaaagccaattacctgttgatgtggctgctagtactgaaagagtttcaaccaaaatgccaattgatgtgaataccttaaatggtgagatgcctcctcagaaagcaatgcagactgctgtagtaggaagaaatatcttgttaacttatcgtctgaatctcgatggtttccctggttttggttgggcatttacttattttgctgaaattgaggatttaaaaccttgtcatagtaggaaattccggttgcttctccctggagctcctaatatcagcaaggttgctgttgatatccaagagaatacccatgggaaatatcgtttacatgagcccggctacttcaacttgtccttgccctttgtattatcttttagtttgggaaagacatccgattccaccatggggcctctcttgaatgctatggaagtaaacagatatgtaaagagaactgatggctctttagatggtaaaatcatgtctttttctttgaacattattataatgtggttcattgaaattagtatctatagtttatttcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0179M08-ijYcl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0179M08.1" temp_strand="+" temp_description="C09HBa0179M08.1  EU180574.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0179M08 upload_account_name:spain">
        <position start="127552" stop="128737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127852" g_stop="128434" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="597"/>
      <MATCH_line gen_id="C09HBa0179M08.1" gen_strand="+" ref_id="SGN-U331813" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0179M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127852" e_stop="128434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGA-CCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACCTTGTTGATGTGGCTGCTGGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATGGCTCGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTGAAACCTGGTGATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTGATATCAGCAAGGTTGCTGTTAATATCCAAGAGAATGCCCATGGGAAATATCGTTTATATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTCGTTTCGGAAAGACATCTGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGACGGTAAAACCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCGTTGAAATGATTATCTGCAGTTTATTTCATTA</genome_strand>
        <mrna_strand>CTGATGACCCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACC-TGTTGATGTGGCTGCTAGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATATCTTGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTAAAACCTTGTCATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTAATATCAGCAAGGTTGCTGTTGATATCCAAGAGAATACCCATGGGAAATATCGTTTACATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTAGTTTGGGAAAGACATCCGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGATGGTAAAATCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCATTGAAATTAGTATCTATAGTTTATTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2607" PGL_stop="1682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2607" e_stop="1682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2607" e_stop="1682" e_length="926"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2607" stop="1682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTCTGATTTTCAGTTACACTATGGCTGATCGCGTACATCCTCGAGATTCATCGCCGGCGAGTTCACCGATTTCGTCAAAAAACTCCGGCGGAGTAGCTACGGGAACTCAGACAAAGCATGTGCTGCCGTCGCCGGGAACGTATGTTGTTCAAGTACCAAAAGATCAAATCTATCGGTATCCTCCACCGGGGAATTCTCGACGTTACGAAGCTTTGAGAAAACGAAAGCCTCGTCGGAGCTGCTGTTGCCGGTGCGTTTGCTATACTTTATCTCTCCTTCTAATTCTCATTATCGCACTTGGAATCACTGCTGCTGTTGTCTACCTCGTCTTCCGTCCTGAAGCTCCAAAATACACTATCTCCGACGTCGCGATTAAGAATTTCAACTTAACTTCGTCGTCTCCGGTATCGCCGGAATTCGACGTTACTATCCGAGCTGAAAATCCTAACAATAAGATCGGAATTTACTACCGGAAAGGAAGCTCTGTCACCGTATTCTACTCCGATGTCCGTCTCTCTAACGGCGAGTTGCCGGAGTTCTATCAGCCTTCGACTAACATAACTGTTTTTCAGACGCCGCTAAAAGGATCAAACGTCTTGCTTGGTAACGCCGTTAAAACGGCGTTAAGGAATGAACAGATGAAAGGAAAAGTTCCGTTTAAGGTTAACATTAAAGTTCCCGTTAAAGTTAAAGTTGGCGCCGTTAAGACGTGGGAAATCACCGTTAAGGTTAAGTGTGATGTAACGGTGAATACTTTAACGGCCAAATCAAAAATAATTTCTAAAGATTGTAAATATAGTGTTAGCCTTTGGTAGTAAATAGTGATATATCTAGGATTTTATTTTTTTTCCTTTTCCTTCTATTGGTAGTAAAAATAGTTTACATAATAAAGTGAAATTTTTATAATATACTAAAATACACG</gDNA_template>
            <first_frame> P  F  L  I  F  S  Y  T  M  A  D  R  V  H  P  R  D  S  S  P  A  S  S  P  I  S  S  K  N  S  G  G  V  A  T  G  T  Q  T  K  H  V  L  P  S  P  G  T  Y  V  V  Q  V  P  K  D  Q  I  Y  R  Y  P  P  P  G  N  S  R  R  Y  E  A  L  R  K  R  K  P  R  R  S  C  C  C  R  C  V  C  Y  T  L  S  L  L  L  I  L  I  I  A  L  G  I  T  A  A  V  V  Y  L  V  F  R  P  E  A  P  K  Y  T  I  S  D  V  A  I  K  N  F  N  L  T  S  S  S  P  V  S  P  E  F  D  V  T  I  R  A  E  N  P  N  N  K  I  G  I  Y  Y  R  K  G  S  S  V  T  V  F  Y  S  D  V  R  L  S  N  G  E  L  P  E  F  Y  Q  P  S  T  N  I  T  V  F  Q  T  P  L  K  G  S  N  V  L  L  G  N  A  V  K  T  A  L  R  N  E  Q  M  K  G  K  V  P  F  K  V  N  I  K  V  P  V  K  V  K  V  G  A  V  K  T  W  E  I  T  V  K  V  K  C  D  V  T  V  N  T  L  T  A  K  S  K  I  I  S  K  D  C  K  Y  S  V  S  L  W  *  *  I  V  I  Y  L  G  F  Y  F  F  S  F  S  F  Y  W  *  *  K  *  F  T  *  *  S  E  I  F  I  I  Y  *  N  T   </first_frame>
            <second_frame>  L  F  *  F  S  V  T  L  W  L  I  A  Y  I  L  E  I  H  R  R  R  V  H  R  F  R  Q  K  T  P  A  E  *  L  R  E  L  R  Q  S  M  C  C  R  R  R  E  R  M  L  F  K  Y  Q  K  I  K  S  I  G  I  L  H  R  G  I  L  D  V  T  K  L  *  E  N  E  S  L  V  G  A  A  V  A  G  A  F  A  I  L  Y  L  S  F  *  F  S  L  S  H  L  E  S  L  L  L  L  S  T  S  S  S  V  L  K  L  Q  N  T  L  S  P  T  S  R  L  R  I  S  T  *  L  R  R  L  R  Y  R  R  N  S  T  L  L  S  E  L  K  I  L  T  I  R  S  E  F  T  T  G  K  E  A  L  S  P  Y  S  T  P  M  S  V  S  L  T  A  S  C  R  S  S  I  S  L  R  L  T  *  L  F  F  R  R  R  *  K  D  Q  T  S  C  L  V  T  P  L  K  R  R  *  G  M  N  R  *  K  E  K  F  R  L  R  L  T  L  K  F  P  L  K  L  K  L  A  P  L  R  R  G  K  S  P  L  R  L  S  V  M  *  R  *  I  L  *  R  P  N  Q  K  *  F  L  K  I  V  N  I  V  L  A  F  G  S  K  *  *  Y  I  *  D  F  I  F  F  P  F  P  S  I  G  S  K  N  S  L  H  N  K  V  K  F  L  *  Y  T  K  I  H  </second_frame>
            <third_frame>   F  S  D  F  Q  L  H  Y  G  *  S  R  T  S  S  R  F  I  A  G  E  F  T  D  F  V  K  K  L  R  R  S  S  Y  G  N  S  D  K  A  C  A  A  V  A  G  N  V  C  C  S  S  T  K  R  S  N  L  S  V  S  S  T  G  E  F  S  T  L  R  S  F  E  K  T  K  A  S  S  E  L  L  L  P  V  R  L  L  Y  F  I  S  P  S  N  S  H  Y  R  T  W  N  H  C  C  C  C  L  P  R  L  P  S  *  S  S  K  I  H  Y  L  R  R  R  D  *  E  F  Q  L  N  F  V  V  S  G  I  A  G  I  R  R  Y  Y  P  S  *  K  S  *  Q  *  D  R  N  L  L  P  E  R  K  L  C  H  R  I  L  L  R  C  P  S  L  *  R  R  V  A  G  V  L  S  A  F  D  *  H  N  C  F  S  D  A  A  K  R  I  K  R  L  A  W  *  R  R  *  N  G  V  K  E  *  T  D  E  R  K  S  S  V  *  G  *  H  *  S  S  R  *  S  *  S  W  R  R  *  D  V  G  N  H  R  *  G  *  V  *  C  N  G  E  Y  F  N  G  Q  I  K  N  N  F  *  R  L  *  I  *  C  *  P  L  V  V  N  S  D  I  S  R  I  L  F  F  F  L  F  L  L  L  V  V  K  I  V  Y  I  I  K  *  N  F  Y  N  I  L  K  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2607" stop="1789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLIFSYTMADRVHPRDSSPASSPISSKNSGGVATGTQTKHVLPSPGTYVVQVPKDQIYRYPPPGNSRRYEALRKRKPRRSCCCRCVCYTLSLLLILIIALGITAAVVYLVFRPEAPKYTISDVAIKNFNLTSSSPVSPEFDVTIRAENPNNKIGIYYRKGSSVTVFYSDVRLSNGELPEFYQPSTNITVFQTPLKGSNVLLGNAVKTALRNEQMKGKVPFKVNIKVPVKVKVGAVKTWEITVKVKCDVTVNTLTAKSKIISKDCKYSVSLW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6394" PGL_stop="5114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6394" e_stop="6318"/>
            <exon e_start="5526" e_stop="5114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.961"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6394" e_stop="6318" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="5527" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="5526" e_stop="5114" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6394" stop="6318"/>
              <exon start="5526" stop="5114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCAAGGAGCATGAGCGGCTTCTCATATCGAATTACACCGATGCCCCATGTTTAGCTCTTTATCTTCTTCGAAAAG : ATGCAGAACGCTGTAAGCTACATCCTTTATCTCTAGATGATCGACTCAAGATCTCTGTAGATGTTGCTCGTTGTCTAAACTACCTTCACCATGAAAGTGCCATACCTCATGGCAACCTGAAATCCACAAATGTACTTATAGACACGTCTAACGTGAATGCCCTACTTACCGACTATAGTCTTCATAGATTGATGACATCTGCTGGAACAGCTGAGCAGGTTCTAAATGCCGGTGTACTCGGTTATCGTCCTCCTGAATTCGCGAGTACAAGTAAACCTTGTCCGTCTTTGAAAAGTGACGTCTACGCTTTTGGTGTTATCTTGTTGGAACTTTTGACAGGAAGAAGTTCTGCAGAAATTGTTCCTGGGAACTCAGAGGTGCTGGATTTAACCGAATGGGCGAGATTGTTGGCC</gDNA_template>
            <first_frame> S  Q  G  A  *  A  A  S  H  I  E  L  H  R  C  P  M  F  S  S  L  S  S  S  K  R :   C  R  T  L  *  A  T  S  F  I  S  R  *  S  T  Q  D  L  C  R  C  C  S  L  S  K  L  P  S  P  *  K  C  H  T  S  W  Q  P  E  I  H  K  C  T  Y  R  H  V  *  R  E  C  P  T  Y  R  L  *  S  S  *  I  D  D  I  C  W  N  S  *  A  G  S  K  C  R  C  T  R  L  S  S  S  *  I  R  E  Y  K  *  T  L  S  V  F  E  K  *  R  L  R  F  W  C  Y  L  V  G  T  F  D  R  K  K  F  C  R  N  C  S  W  E  L  R  G  A  G  F  N  R  M  G  E  I  V  G  </first_frame>
            <second_frame>  P  K  E  H  E  R  L  L  I  S  N  Y  T  D  A  P  C  L  A  L  Y  L  L  R  K   : D  A  E  R  C  K  L  H  P  L  S  L  D  D  R  L  K  I  S  V  D  V  A  R  C  L  N  Y  L  H  H  E  S  A  I  P  H  G  N  L  K  S  T  N  V  L  I  D  T  S  N  V  N  A  L  L  T  D  Y  S  L  H  R  L  M  T  S  A  G  T  A  E  Q  V  L  N  A  G  V  L  G  Y  R  P  P  E  F  A  S  T  S  K  P  C  P  S  L  K  S  D  V  Y  A  F  G  V  I  L  L  E  L  L  T  G  R  S  S  A  E  I  V  P  G  N  S  E  V  L  D  L  T  E  W  A  R  L  L  A </second_frame>
            <third_frame>   P  R  S  M  S  G  F  S  Y  R  I  T  P  M  P  H  V  *  L  F  I  F  F  E  K  :  M  Q  N  A  V  S  Y  I  L  Y  L  *  M  I  D  S  R  S  L  *  M  L  L  V  V  *  T  T  F  T  M  K  V  P  Y  L  M  A  T  *  N  P  Q  M  Y  L  *  T  R  L  T  *  M  P  Y  L  P  T  I  V  F  I  D  *  *  H  L  L  E  Q  L  S  R  F  *  M  P  V  Y  S  V  I  V  L  L  N  S  R  V  Q  V  N  L  V  R  L  *  K  V  T  S  T  L  L  V  L  S  C  W  N  F  *  Q  E  E  V  L  Q  K  L  F  L  G  T  Q  R  C  W  I  *  P  N  G  R  D  C  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6393" stop="6318"/>
                    <exon start="5526" stop="5114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKEHERLLISNYTDAPCLALYLLRKDAERCKLHPLSLDDRLKISVDVARCLNYLHHESAIPHGNLKSTNVLIDTSNVNALLTDYSLHRLMTSAGTAEQVLNAGVLGYRPPEFASTSKPCPSLKSDVYAFGVILLELLTGRSSAEIVPGNSEVLDLTEWARLLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8793" PGL_stop="6960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8793" e_stop="8554"/>
            <exon e_start="7832" e_stop="6960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.139" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8793" e_stop="8554" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.139">
            <gDNA_intron_boundary i_start="8553" i_stop="7833" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="7832" e_stop="6960" e_length="873"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8793" stop="8554"/>
              <exon start="7832" stop="6960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATAACCTGGACGGAGAGCTATTTCCTCACGATGGAATGCCATATTTTGACAGTTTAGAGGTGTTTGATGCAAGTAACAATCAGCTTACTGGTACTATTCCATCCTTCAATTTTGTGGTCTCCCTTCGAATTCTTAGGCTAGGGAACAATCAGTTGTCTGGATCACTCCCCGAAGCTCTTCTAGAGGATAGCTCAATGATTTTATCAGAATTGGACCTAAGCCAGAATCAGCTTGCAG : GTCCCATCGGAGGTATAAGTGCTGTGAATCTCAAGCTTCTAAATTTATCATATAACCAGCTGTCAGGCCCCTTGCCTTTCAAGGTTGGGCGCTGTGCAATCATAGACCTGAGCAACAATCGGCTAACTGGAAATGTGTCCCGGATCCAAGGTTGGGGAAATTATGTTGAAGTTATTGTGTTAAGCTCAAATGCATTGACAGGAACCTTCCCCAACCAAACTTCCCAGTTCTTGAGGCTTACTTTGTTAAAGATTTCAAACAACTCGCTTGAAGGTGTGTTACCAACTATGTTAGGGACATACCTCGAACTTAAAACAATTGATCTTAGCATTAACCAACTAAGTGGTACTCTCCTTCCCAGCCTTTTCAACTCTACCAAATTGACTGATATTAACGTTTCTTTCAACAAATTTACCGGTAGTGTACCTATCATGGCATTTAACTCAGAGAATCTTAGCTTGGTTTCTCTAGATGTTTCACATAATGCATTAGCTGGTCCGTTGCCTCCGGGGCTGGACAAGTTCCCGGACATGGTAAATCTGGATCTCTCTGATAACAAATTTGAAGGTGGCCTTCCTAATGATCTCTCAGAGAAATTGGAATTTTTAAATGTGGCTAATAACAATTTTTCTGGACCTGTTCCACAAAATTTATGGAGGTTTCCTGACTCCTCATTCCATCCGGGGAATCCCTTGCTTGTACTTCCAAAGCATGCTGAAGCTCCTTCAGAGGGAGATTCAACTTTAAGCTTGAGAAGTCATGGTTCTCGCATGAAATCTACCATCAGGGCTGCCCTCATTGCTGGGCTGATCTGTGGTGTATCTGTTATAGCTTTGTTGACATTAATAATCTACCACAAGGCCCATCAGCGAG</gDNA_template>
            <first_frame> I  I  T  W  T  E  S  Y  F  L  T  M  E  C  H  I  L  T  V  *  R  C  L  M  Q  V  T  I  S  L  L  V  L  F  H  P  S  I  L  W  S  P  F  E  F  L  G  *  G  T  I  S  C  L  D  H  S  P  K  L  F  *  R  I  A  Q  *  F  Y  Q  N  W  T  *  A  R  I  S  L  Q  :  V  P  S  E  V  *  V  L  *  I  S  S  F  *  I  Y  H  I  T  S  C  Q  A  P  C  L  S  R  L  G  A  V  Q  S  *  T  *  A  T  I  G  *  L  E  M  C  P  G  S  K  V  G  E  I  M  L  K  L  L  C  *  A  Q  M  H  *  Q  E  P  S  P  T  K  L  P  S  S  *  G  L  L  C  *  R  F  Q  T  T  R  L  K  V  C  Y  Q  L  C  *  G  H  T  S  N  L  K  Q  L  I  L  A  L  T  N  *  V  V  L  S  F  P  A  F  S  T  L  P  N  *  L  I  L  T  F  L  S  T  N  L  P  V  V  Y  L  S  W  H  L  T  Q  R  I  L  A  W  F  L  *  M  F  H  I  M  H  *  L  V  R  C  L  R  G  W  T  S  S  R  T  W  *  I  W  I  S  L  I  T  N  L  K  V  A  F  L  M  I  S  Q  R  N  W  N  F  *  M  W  L  I  T  I  F  L  D  L  F  H  K  I  Y  G  G  F  L  T  P  H  S  I  R  G  I  P  C  L  Y  F  Q  S  M  L  K  L  L  Q  R  E  I  Q  L  *  A  *  E  V  M  V  L  A  *  N  L  P  S  G  L  P  S  L  L  G  *  S  V  V  Y  L  L  *  L  C  *  H  *  *  S  T  T  R  P  I  S  E </first_frame>
            <second_frame>  *  *  P  G  R  R  A  I  S  S  R  W  N  A  I  F  *  Q  F  R  G  V  *  C  K  *  Q  S  A  Y  W  Y  Y  S  I  L  Q  F  C  G  L  P  S  N  S  *  A  R  E  Q  S  V  V  W  I  T  P  R  S  S  S  R  G  *  L  N  D  F  I  R  I  G  P  K  P  E  S  A  C  R :   S  H  R  R  Y  K  C  C  E  S  Q  A  S  K  F  I  I  *  P  A  V  R  P  L  A  F  Q  G  W  A  L  C  N  H  R  P  E  Q  Q  S  A  N  W  K  C  V  P  D  P  R  L  G  K  L  C  *  S  Y  C  V  K  L  K  C  I  D  R  N  L  P  Q  P  N  F  P  V  L  E  A  Y  F  V  K  D  F  K  Q  L  A  *  R  C  V  T  N  Y  V  R  D  I  P  R  T  *  N  N  *  S  *  H  *  P  T  K  W  Y  S  P  S  Q  P  F  Q  L  Y  Q  I  D  *  Y  *  R  F  F  Q  Q  I  Y  R  *  C  T  Y  H  G  I  *  L  R  E  S  *  L  G  F  S  R  C  F  T  *  C  I  S  W  S  V  A  S  G  A  G  Q  V  P  G  H  G  K  S  G  S  L  *  *  Q  I  *  R  W  P  S  *  *  S  L  R  E  I  G  I  F  K  C  G  *  *  Q  F  F  W  T  C  S  T  K  F  M  E  V  S  *  L  L  I  P  S  G  E  S  L  A  C  T  S  K  A  C  *  S  S  F  R  G  R  F  N  F  K  L  E  K  S  W  F  S  H  E  I  Y  H  Q  G  C  P  H  C  W  A  D  L  W  C  I  C  Y  S  F  V  D  I  N  N  L  P  Q  G  P  S  A   </second_frame>
            <third_frame>   N  N  L  D  G  E  L  F  P  H  D  G  M  P  Y  F  D  S  L  E  V  F  D  A  S  N  N  Q  L  T  G  T  I  P  S  F  N  F  V  V  S  L  R  I  L  R  L  G  N  N  Q  L  S  G  S  L  P  E  A  L  L  E  D  S  S  M  I  L  S  E  L  D  L  S  Q  N  Q  L  A   : G  P  I  G  G  I  S  A  V  N  L  K  L  L  N  L  S  Y  N  Q  L  S  G  P  L  P  F  K  V  G  R  C  A  I  I  D  L  S  N  N  R  L  T  G  N  V  S  R  I  Q  G  W  G  N  Y  V  E  V  I  V  L  S  S  N  A  L  T  G  T  F  P  N  Q  T  S  Q  F  L  R  L  T  L  L  K  I  S  N  N  S  L  E  G  V  L  P  T  M  L  G  T  Y  L  E  L  K  T  I  D  L  S  I  N  Q  L  S  G  T  L  L  P  S  L  F  N  S  T  K  L  T  D  I  N  V  S  F  N  K  F  T  G  S  V  P  I  M  A  F  N  S  E  N  L  S  L  V  S  L  D  V  S  H  N  A  L  A  G  P  L  P  P  G  L  D  K  F  P  D  M  V  N  L  D  L  S  D  N  K  F  E  G  G  L  P  N  D  L  S  E  K  L  E  F  L  N  V  A  N  N  N  F  S  G  P  V  P  Q  N  L  W  R  F  P  D  S  S  F  H  P  G  N  P  L  L  V  L  P  K  H  A  E  A  P  S  E  G  D  S  T  L  S  L  R  S  H  G  S  R  M  K  S  T  I  R  A  A  L  I  A  G  L  I  C  G  V  S  V  I  A  L  L  T  L  I  I  Y  H  K  A  H  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8791" stop="8554"/>
                    <exon start="7832" stop="6961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNLDGELFPHDGMPYFDSLEVFDASNNQLTGTIPSFNFVVSLRILRLGNNQLSGSLPEALLEDSSMILSELDLSQNQLAGPIGGISAVNLKLLNLSYNQLSGPLPFKVGRCAIIDLSNNRLTGNVSRIQGWGNYVEVIVLSSNALTGTFPNQTSQFLRLTLLKISNNSLEGVLPTMLGTYLELKTIDLSINQLSGTLLPSLFNSTKLTDINVSFNKFTGSVPIMAFNSENLSLVSLDVSHNALAGPLPPGLDKFPDMVNLDLSDNKFEGGLPNDLSEKLEFLNVANNNFSGPVPQNLWRFPDSSFHPGNPLLVLPKHAEAPSEGDSTLSLRSHGSRMKSTIRAALIAGLICGVSVIALLTLIIYHKAHQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23411" PGL_stop="22078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23411" e_stop="23281"/>
            <exon e_start="22879" e_stop="22078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23411" e_stop="23281" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.907">
            <gDNA_intron_boundary i_start="23280" i_stop="22880" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="22879" e_stop="22078" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23411" stop="23281"/>
              <exon start="22879" stop="22078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323555" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTTAGCAAAATTAAAATAAAAATGGATTCAAAGGGAGCTGCACCAAATCAAGTTTATGAAGATTTTGTGCCAACTACAGAGTTGGTGCAAGAACAAGACTCTGATACTCTTCTCCTTGATCTCACAG : GTTTCAGAAAGGAACAAGTGAGGGTTCAACTGACTAGAACAGGAGTTGTGAAGATTAGTGGACAAAGACCAGTTGCTGAGAACAAATGGCTTAGATTTCAGAAGGATTTTCCTGTTTCACAAAATTGCGACAGGACGAAAATCAGTGCAAAGTTTGAAAATGGCATACTTTATGTCAAACAACCAAAACTTATAACAACTTCACCACAGAAAAAAGATCAAGAATTGCCAACATCTGATCCTCAACAGCCCAACGACGAGCCACAACCAACGTCTCAGAAGAAAGACGAACAACAAACACAAGACGAAAAAACACAAACAGAAGAATTGCCTAAACATCAGGCTACTAATGCTGAAAAGCCTGAAATGGAAGAACAAGACACTAAAGAAACACCTGCTGAGTATACTGGTGCAAGTAGCACTATGGAAGAGGAAAATAAACCGAGTTATGCGTGTAAACTTGATAAAGATGCATATACTAGAACTGCAGATGTTGTAGCTGAGAAGCTGAAGATGCCAAGGAAACTGATGAACATGACTCTGATTGCTCTTTTGGTTCTTGGAATTGGCCTATATATCAGCAATAAGATGAAATCCAACAATTAAATAGTCGTGTTTCGTCTAATAAACCAAAACTAAGTTGGGATATTTGCATTTCTCCCAGCTTATGTGAGTGTATATGAAGAAAACTCACAGACTACTGCTCCTTCTTCTTATTGCATTGCTGAATTGTATACATGAAACGTTCGTTTCAAAAATTTGTATCGAATAAAAATACAGTATGACATGATTTATACTATGGT</gDNA_template>
            <first_frame> *  I  *  Q  N  *  N  K  N  G  F  K  G  S  C  T  K  S  S  L  *  R  F  C  A  N  Y  R  V  G  A  R  T  R  L  *  Y  S  S  P  *  S  H  R :   F  Q  K  G  T  S  E  G  S  T  D  *  N  R  S  C  E  D  *  W  T  K  T  S  C  *  E  Q  M  A  *  I  S  E  G  F  S  C  F  T  K  L  R  Q  D  E  N  Q  C  K  V  *  K  W  H  T  L  C  Q  T  T  K  T  Y  N  N  F  T  T  E  K  R  S  R  I  A  N  I  *  S  S  T  A  Q  R  R  A  T  T  N  V  S  E  E  R  R  T  T  N  T  R  R  K  N  T  N  R  R  I  A  *  T  S  G  Y  *  C  *  K  A  *  N  G  R  T  R  H  *  R  N  T  C  *  V  Y  W  C  K  *  H  Y  G  R  G  K  *  T  E  L  C  V  *  T  *  *  R  C  I  Y  *  N  C  R  C  C  S  *  E  A  E  D  A  K  E  T  D  E  H  D  S  D  C  S  F  G  S  W  N  W  P  I  Y  Q  Q  *  D  E  I  Q  Q  L  N  S  R  V  S  S  N  K  P  K  L  S  W  D  I  C  I  S  P  S  L  C  E  C  I  *  R  K  L  T  D  Y  C  S  F  F  L  L  H  C  *  I  V  Y  M  K  R  S  F  Q  K  F  V  S  N  K  N  T  V  *  H  D  L  Y  Y  G </first_frame>
            <second_frame>  K  F  S  K  I  K  I  K  M  D  S  K  G  A  A  P  N  Q  V  Y  E  D  F  V  P  T  T  E  L  V  Q  E  Q  D  S  D  T  L  L  L  D  L  T   : G  F  R  K  E  Q  V  R  V  Q  L  T  R  T  G  V  V  K  I  S  G  Q  R  P  V  A  E  N  K  W  L  R  F  Q  K  D  F  P  V  S  Q  N  C  D  R  T  K  I  S  A  K  F  E  N  G  I  L  Y  V  K  Q  P  K  L  I  T  T  S  P  Q  K  K  D  Q  E  L  P  T  S  D  P  Q  Q  P  N  D  E  P  Q  P  T  S  Q  K  K  D  E  Q  Q  T  Q  D  E  K  T  Q  T  E  E  L  P  K  H  Q  A  T  N  A  E  K  P  E  M  E  E  Q  D  T  K  E  T  P  A  E  Y  T  G  A  S  S  T  M  E  E  E  N  K  P  S  Y  A  C  K  L  D  K  D  A  Y  T  R  T  A  D  V  V  A  E  K  L  K  M  P  R  K  L  M  N  M  T  L  I  A  L  L  V  L  G  I  G  L  Y  I  S  N  K  M  K  S  N  N  *  I  V  V  F  R  L  I  N  Q  N  *  V  G  I  F  A  F  L  P  A  Y  V  S  V  Y  E  E  N  S  Q  T  T  A  P  S  S  Y  C  I  A  E  L  Y  T  *  N  V  R  F  K  N  L  Y  R  I  K  I  Q  Y  D  M  I  Y  T  M   </second_frame>
            <third_frame>   N  L  A  K  L  K  *  K  W  I  Q  R  E  L  H  Q  I  K  F  M  K  I  L  C  Q  L  Q  S  W  C  K  N  K  T  L  I  L  F  S  L  I  S  Q  :  V  S  E  R  N  K  *  G  F  N  *  L  E  Q  E  L  *  R  L  V  D  K  D  Q  L  L  R  T  N  G  L  D  F  R  R  I  F  L  F  H  K  I  A  T  G  R  K  S  V  Q  S  L  K  M  A  Y  F  M  S  N  N  Q  N  L  *  Q  L  H  H  R  K  K  I  K  N  C  Q  H  L  I  L  N  S  P  T  T  S  H  N  Q  R  L  R  R  K  T  N  N  K  H  K  T  K  K  H  K  Q  K  N  C  L  N  I  R  L  L  M  L  K  S  L  K  W  K  N  K  T  L  K  K  H  L  L  S  I  L  V  Q  V  A  L  W  K  R  K  I  N  R  V  M  R  V  N  L  I  K  M  H  I  L  E  L  Q  M  L  *  L  R  S  *  R  C  Q  G  N  *  *  T  *  L  *  L  L  F  W  F  L  E  L  A  Y  I  S  A  I  R  *  N  P  T  I  K  *  S  C  F  V  *  *  T  K  T  K  L  G  Y  L  H  F  S  Q  L  M  *  V  Y  M  K  K  T  H  R  L  L  L  L  L  L  I  A  L  L  N  C  I  H  E  T  F  V  S  K  I  C  I  E  *  K  Y  S  M  T  *  F  I  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23410" stop="23281"/>
                    <exon start="22879" stop="22275"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSKIKIKMDSKGAAPNQVYEDFVPTTELVQEQDSDTLLLDLTGFRKEQVRVQLTRTGVVKISGQRPVAENKWLRFQKDFPVSQNCDRTKISAKFENGILYVKQPKLITTSPQKKDQELPTSDPQQPNDEPQPTSQKKDEQQTQDEKTQTEELPKHQATNAEKPEMEEQDTKETPAEYTGASSTMEEENKPSYACKLDKDAYTRTADVVAEKLKMPRKLMNMTLIALLVLGIGLYISNKMKSNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27420" PGL_stop="30977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27420" e_stop="27451"/>
            <exon e_start="28344" e_stop="28418"/>
            <exon e_start="28544" e_stop="28604"/>
            <exon e_start="29415" e_stop="29501"/>
            <exon e_start="29851" e_stop="29949"/>
            <exon e_start="30038" e_stop="30140"/>
            <exon e_start="30209" e_stop="30285"/>
            <exon e_start="30466" e_stop="30573"/>
            <exon e_start="30655" e_stop="30738"/>
            <exon e_start="30826" e_stop="30977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.882" acc_prob="0.991" e_score="0.976"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27420" e_stop="27451" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27452" i_stop="28343" i_length="892"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28344" e_stop="28418" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="28419" i_stop="28543" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28544" e_stop="28604" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28605" i_stop="29414" i_length="810"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29415" e_stop="29501" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29502" i_stop="29850" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29851" e_stop="29949" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29950" i_stop="30037" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30038" e_stop="30140" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30141" i_stop="30208" i_length="68"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30209" e_stop="30285" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.864">
            <gDNA_intron_boundary i_start="30286" i_stop="30465" i_length="180"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="30466" e_stop="30573" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30574" i_stop="30654" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.976">
            <gDNA_exon_boundary e_start="30655" e_stop="30738" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.882" acc_prob="0.991">
            <gDNA_intron_boundary i_start="30739" i_stop="30825" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="30826" e_stop="30977" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27420" stop="27451"/>
              <exon start="28344" stop="28418"/>
              <exon start="28544" stop="28604"/>
              <exon start="29415" stop="29501"/>
              <exon start="29851" stop="29949"/>
              <exon start="30038" stop="30140"/>
              <exon start="30209" stop="30285"/>
              <exon start="30466" stop="30573"/>
              <exon start="30655" stop="30738"/>
              <exon start="30826" stop="30977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAGAGAAAATCAACATCAATGGCTGCTCT : AAGTGTACAAGAAGTTCTACCAGCAACTCTGGAATCTACTTCCGAACCTCCGTCTCTCTTTGATGGAACTACCAG : GTTGTATATCAATTATCAATGCCCGTATTCTCAGCGTGTGTGGATTACCAGGAATGTTAAG : GGTTTGCAAGACAAGATCAACTTAGTTCCGATTGATCTTCAGAACATGCCTGATTGGTACAAGGAAAAAGTTTATCCCCAAAATAAG : GTGCCATCCCTGGAGCACAATAACAAAATGATAGGAGAGAGTTTGGATCTGGTTAAATATGTTGATAGCAACTTCGAGGGACCATCACTTTTGCCGGAT : GACCCTGAAAAGCGGAAATTTGCTGAAGAATTGATAGCTTATAGTGATATATTCGTCCCAGAAGTATACAAATCGTTCTTCAGAGATGCACAGACACTGGCTG : GTGCACAATTCGATTACCTAGAGAAAGCTCTTGACAAATTTGACGATGGACCTTTCTTCCTCGGTCAATTCAGTCAG : GTTGACATAGCATATGTTCCATTTATCGAAAGGTTCCAAATTTTCATGGAAAAGGGGATTAACTATGACATCACATCCGCGAGGCCTAAACTAGCCAAATTGATCGAG : GAAATGAACAAGCTTGACGGTTACAAGCAAACAAAAGTCTTGGATCCAGAGAAACTGGTTGAATACTATAAGAATCTCTTTCTG : AAAAAGGCTTGAAACTTCAAAAATGCATTTGATCTAGTTACATGGGCTAGTACTTTGATATATCAAATATGTTTGTGGAGTTCTATAATATTATGTATCAATAAATTGGCTCTGTATTTTTGTGATTGTATTTTCCTTTTATCATCATAAAT</gDNA_template>
            <first_frame> L  Q  R  K  S  T  S  M  A  A  L :   S  V  Q  E  V  L  P  A  T  L  E  S  T  S  E  P  P  S  L  F  D  G  T  T  R :   L  Y  I  N  Y  Q  C  P  Y  S  Q  R  V  W  I  T  R  N  V  K  :  G  L  Q  D  K  I  N  L  V  P  I  D  L  Q  N  M  P  D  W  Y  K  E  K  V  Y  P  Q  N  K  :  V  P  S  L  E  H  N  N  K  M  I  G  E  S  L  D  L  V  K  Y  V  D  S  N  F  E  G  P  S  L  L  P  D  :  D  P  E  K  R  K  F  A  E  E  L  I  A  Y  S  D  I  F  V  P  E  V  Y  K  S  F  F  R  D  A  Q  T  L  A   : G  A  Q  F  D  Y  L  E  K  A  L  D  K  F  D  D  G  P  F  F  L  G  Q  F  S  Q  :  V  D  I  A  Y  V  P  F  I  E  R  F  Q  I  F  M  E  K  G  I  N  Y  D  I  T  S  A  R  P  K  L  A  K  L  I  E  :  E  M  N  K  L  D  G  Y  K  Q  T  K  V  L  D  P  E  K  L  V  E  Y  Y  K  N  L  F  L  :  K  K  A  *  N  F  K  N  A  F  D  L  V  T  W  A  S  T  L  I  Y  Q  I  C  L  W  S  S  I  I  L  C  I  N  K  L  A  L  Y  F  C  D  C  I  F  L  L  S  S  *   </first_frame>
            <second_frame>  C  R  E  N  Q  H  Q  W  L  L   : *  V  Y  K  K  F  Y  Q  Q  L  W  N  L  L  P  N  L  R  L  S  L  M  E  L  P   : G  C  I  S  I  I  N  A  R  I  L  S  V  C  G  L  P  G  M  L  R :   V  C  K  T  R  S  T  *  F  R  L  I  F  R  T  C  L  I  G  T  R  K  K  F  I  P  K  I  R :   C  H  P  W  S  T  I  T  K  *  *  E  R  V  W  I  W  L  N  M  L  I  A  T  S  R  D  H  H  F  C  R  M :   T  L  K  S  G  N  L  L  K  N  *  *  L  I  V  I  Y  S  S  Q  K  Y  T  N  R  S  S  E  M  H  R  H  W  L  :  V  H  N  S  I  T  *  R  K  L  L  T  N  L  T  M  D  L  S  S  S  V  N  S  V  R :   L  T  *  H  M  F  H  L  S  K  G  S  K  F  S  W  K  R  G  L  T  M  T  S  H  P  R  G  L  N  *  P  N  *  S  R :   K  *  T  S  L  T  V  T  S  K  Q  K  S  W  I  Q  R  N  W  L  N  T  I  R  I  S  F  * :   K  R  L  E  T  S  K  M  H  L  I  *  L  H  G  L  V  L  *  Y  I  K  Y  V  C  G  V  L  *  Y  Y  V  S  I  N  W  L  C  I  F  V  I  V  F  S  F  Y  H  H  K  </second_frame>
            <third_frame>   A  E  K  I  N  I  N  G  C  S  :  K  C  T  R  S  S  T  S  N  S  G  I  Y  F  R  T  S  V  S  L  *  W  N  Y  Q  :  V  V  Y  Q  L  S  M  P  V  F  S  A  C  V  D  Y  Q  E  C  *   : G  F  A  R  Q  D  Q  L  S  S  D  *  S  S  E  H  A  *  L  V  Q  G  K  S  L  S  P  K  *   : G  A  I  P  G  A  Q  *  Q  N  D  R  R  E  F  G  S  G  *  I  C  *  *  Q  L  R  G  T  I  T  F  A  G   : *  P  *  K  A  E  I  C  *  R  I  D  S  L  *  *  Y  I  R  P  R  S  I  Q  I  V  L  Q  R  C  T  D  T  G  W :   C  T  I  R  L  P  R  E  S  S  *  Q  I  *  R  W  T  F  L  P  R  S  I  Q  S   : G  *  H  S  I  C  S  I  Y  R  K  V  P  N  F  H  G  K  G  D  *  L  *  H  H  I  R  E  A  *  T  S  Q  I  D  R   : G  N  E  Q  A  *  R  L  Q  A  N  K  S  L  G  S  R  E  T  G  *  I  L  *  E  S  L  S   : E  K  G  L  K  L  Q  K  C  I  *  S  S  Y  M  G  *  Y  F  D  I  S  N  M  F  V  E  F  Y  N  I  M  Y  Q  *  I  G  S  V  F  L  *  L  Y  F  P  F  I  I  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27420" stop="27451"/>
                    <exon start="28344" stop="28418"/>
                    <exon start="28544" stop="28604"/>
                    <exon start="29415" stop="29501"/>
                    <exon start="29851" stop="29949"/>
                    <exon start="30038" stop="30140"/>
                    <exon start="30209" stop="30285"/>
                    <exon start="30466" stop="30573"/>
                    <exon start="30655" stop="30738"/>
                    <exon start="30826" stop="30837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRKSTSMAALSVQEVLPATLESTSEPPSLFDGTTRLYINYQCPYSQRVWITRNVKGLQDKINLVPIDLQNMPDWYKEKVYPQNKVPSLEHNNKMIGESLDLVKYVDSNFEGPSLLPDDPEKRKFAEELIAYSDIFVPEVYKSFFRDAQTLAGAQFDYLEKALDKFDDGPFFLGQFSQVDIAYVPFIERFQIFMEKGINYDITSARPKLAKLIEEMNKLDGYKQTKVLDPEKLVEYYKNLFLKKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32570" PGL_stop="33243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32570" e_stop="32971"/>
            <exon e_start="33200" e_stop="33243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="32570" e_stop="32971" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32972" i_stop="33199" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="33200" e_stop="33243" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32570" stop="32971"/>
              <exon start="33200" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGCGAGTTAATGCATAAATTTGATCAGTTATTGCTAAATCATTGCTATCTGTAAATGTTTCTTTGAGTTGTGAGTTAAGGGATAGAGATAGATTCAAGATTTTTTGCTGATTTGTTGGATCTTTCAAGGTTTTGTTTCTATTTCATAAGATGTCATGTTAGGTTTTAGAGGCATCTGATTCTATTTATTAGAATTGGGGGTGAACCTTCTCGGCACCAAAAACTTGGTGGGAGGAGGTAATGAGTTGGTGAGAAGAATGCTCTTCATGTCAATTGGTGTATGTGTTTTTGATTGACTTTACCTGAGGAGCAAAGAACGATATGGGCTGTAGGGTCAGAGACTTTAATGAAGTATGTTGTTATCCTTCTTGAGTAAGCGTTCATTGGATGTTGATGCCAG : GGATGCATATGGATTTACAGTGAGACCACAACATCTTCAAAGAT</gDNA_template>
            <first_frame> D  S  E  L  M  H  K  F  D  Q  L  L  L  N  H  C  Y  L  *  M  F  L  *  V  V  S  *  G  I  E  I  D  S  R  F  F  A  D  L  L  D  L  S  R  F  C  F  Y  F  I  R  C  H  V  R  F  *  R  H  L  I  L  F  I  R  I  G  G  E  P  S  R  H  Q  K  L  G  G  R  R  *  *  V  G  E  K  N  A  L  H  V  N  W  C  M  C  F  *  L  T  L  P  E  E  Q  R  T  I  W  A  V  G  S  E  T  L  M  K  Y  V  V  I  L  L  E  *  A  F  I  G  C  *  C  Q  :  G  C  I  W  I  Y  S  E  T  T  T  S  S  K   </first_frame>
            <second_frame>  I  A  S  *  C  I  N  L  I  S  Y  C  *  I  I  A  I  C  K  C  F  F  E  L  *  V  K  G  *  R  *  I  Q  D  F  L  L  I  C  W  I  F  Q  G  F  V  S  I  S  *  D  V  M  L  G  F  R  G  I  *  F  Y  L  L  E  L  G  V  N  L  L  G  T  K  N  L  V  G  G  G  N  E  L  V  R  R  M  L  F  M  S  I  G  V  C  V  F  D  *  L  Y  L  R  S  K  E  R  Y  G  L  *  G  Q  R  L  *  *  S  M  L  L  S  F  L  S  K  R  S  L  D  V  D  A  R :   D  A  Y  G  F  T  V  R  P  Q  H  L  Q  R  </second_frame>
            <third_frame>   *  R  V  N  A  *  I  *  S  V  I  A  K  S  L  L  S  V  N  V  S  L  S  C  E  L  R  D  R  D  R  F  K  I  F  C  *  F  V  G  S  F  K  V  L  F  L  F  H  K  M  S  C  *  V  L  E  A  S  D  S  I  Y  *  N  W  G  *  T  F  S  A  P  K  T  W  W  E  E  V  M  S  W  *  E  E  C  S  S  C  Q  L  V  Y  V  F  L  I  D  F  T  *  G  A  K  N  D  M  G  C  R  V  R  D  F  N  E  V  C  C  Y  P  S  *  V  S  V  H  W  M  L  M  P   : G  M  H  M  D  L  Q  *  D  H  N  I  F  K  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0179M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34975" PGL_stop="39589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34975" e_stop="35028"/>
            <exon e_start="37112" e_stop="37170"/>
            <exon e_start="39043" e_stop="39109"/>
            <exon e_start="39187" e_stop="39238"/>
            <exon e_start="39337" e_stop="39429"/>
            <exon e_start="39538" e_stop="39589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.983"/>
          <exon-intron don_prob="0.796" acc_prob="0.975" e_score="0.970"/>
          <exon-intron don_prob="0.517" acc_prob="0.556" e_score="0.942"/>
          <exon-intron don_prob="0.769" acc_prob="0.875" e_score="0.978"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="34975" e_stop="35028" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35029" i_stop="37111" i_length="2083"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="37112" e_stop="37170" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="37171" i_stop="39042" i_length="1872"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="39043" e_stop="39109" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.796" acc_prob="0.975">
            <gDNA_intron_boundary i_start="39110" i_stop="39186" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="39187" e_stop="39238" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.517" acc_prob="0.556">
            <gDNA_intron_boundary i_start="39239" i_stop="39336" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="39337" e_stop="39429" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.769" acc_prob="0.875">
            <gDNA_intron_boundary i_start="39430" i_stop="39537" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.923">
            <gDNA_exon_boundary e_start="39538" e_stop="39589" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34975" stop="35028"/>
              <exon start="37112" stop="37170"/>
              <exon start="39043" stop="39109"/>
              <exon start="39187" stop="39238"/>
              <exon start="39337" stop="39429"/>
              <exon start="39538" stop="39589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCGTCTACTTATAGCATATGCTCGTCACAATCCAGATGTGGGGTATTGCCAG : GCAATGAACTTTTTTGCTGGTATCTTGCTTCTAATGATGCCAGAAGAAAATGCATTCTG : GGCATTGGTGGGTCTTATTGATGAATACTTTGATGGCTGTTACTCACAAGAGATGATAGAATCCCAG : GTGGATCAATTGGTGTTTGAGGAGTTGGTGCGCGAAAGGTTTCCGAAACTTG : TCAATCATCTTGATTACTTGGGAATGCAAGTGGCATGGATTTCTGGACCTTGGTTTCTTTCAATTTTTGTAAATGTGCTTCCCTGGGAAAGTG : TCCTCCGAGTTTGGGATGTGCTTCTCTTTGAGGGAAATCGTGTCATGATCTT</gDNA_template>
            <first_frame> R  R  L  L  I  A  Y  A  R  H  N  P  D  V  G  Y  C  Q  :  A  M  N  F  F  A  G  I  L  L  L  M  M  P  E  E  N  A  F  W :   A  L  V  G  L  I  D  E  Y  F  D  G  C  Y  S  Q  E  M  I  E  S  Q  :  V  D  Q  L  V  F  E  E  L  V  R  E  R  F  P  K  L   : V  N  H  L  D  Y  L  G  M  Q  V  A  W  I  S  G  P  W  F  L  S  I  F  V  N  V  L  P  W  E  S   : V  L  R  V  W  D  V  L  L  F  E  G  N  R  V  M  I   </first_frame>
            <second_frame>  G  V  Y  L  *  H  M  L  V  T  I  Q  M  W  G  I  A  R :   Q  *  T  F  L  L  V  S  C  F  *  *  C  Q  K  K  M  H  S   : G  H  W  W  V  L  L  M  N  T  L  M  A  V  T  H  K  R  *  *  N  P  R :   W  I  N  W  C  L  R  S  W  C  A  K  G  F  R  N  L  :  S  I  I  L  I  T  W  E  C  K  W  H  G  F  L  D  L  G  F  F  Q  F  L  *  M  C  F  P  G  K  V  :  S  S  E  F  G  M  C  F  S  L  R  E  I  V  S  *  S  </second_frame>
            <third_frame>   A  S  T  Y  S  I  C  S  S  Q  S  R  C  G  V  L  P   : G  N  E  L  F  C  W  Y  L  A  S  N  D  A  R  R  K  C  I  L  :  G  I  G  G  S  Y  *  *  I  L  *  W  L  L  L  T  R  D  D  R  I  P   : G  G  S  I  G  V  *  G  V  G  A  R  K  V  S  E  T  C :   Q  S  S  *  L  L  G  N  A  S  G  M  D  F  W  T  L  V  S  F  N  F  C  K  C  A  S  L  G  K  C :   P  P  S  L  G  C  A  S  L  *  G  K  S  C  H  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34975" stop="35028"/>
                    <exon start="37112" stop="37170"/>
                    <exon start="39043" stop="39109"/>
                    <exon start="39187" stop="39238"/>
                    <exon start="39337" stop="39429"/>
                    <exon start="39538" stop="39587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLLIAYARHNPDVGYCQAMNFFAGILLLMMPEENAFWALVGLIDEYFDGCYSQEMIESQVDQLVFEELVRERFPKLVNHLDYLGMQVAWISGPWFLSIFVNVLPWESVLRVWDVLLFEGNRVMI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52042" PGL_stop="47366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52042" e_stop="51824"/>
            <exon e_start="49696" e_stop="49509"/>
            <exon e_start="47742" e_stop="47553"/>
            <exon e_start="47477" e_stop="47366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.789" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52042" e_stop="51824" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.789" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51823" i_stop="49697" i_length="2127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49696" e_stop="49509" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.990">
            <gDNA_intron_boundary i_start="49508" i_stop="47743" i_length="1766"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47742" e_stop="47553" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="47552" i_stop="47478" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47477" e_stop="47366" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52042" stop="51824"/>
              <exon start="49696" stop="49509"/>
              <exon start="47742" stop="47553"/>
              <exon start="47477" stop="47366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGAAAGGGCTTTTTCTTTTTTCCCTCTCTCGTGTGTAGGGTGCCACTCTTCAATACTTTGTGTATATATATAGTCTATATTATGTATAGAGAGAGAGAGTAGAAGGAGGTGAGAGAAATGGGTTGGTTTCCATGTTCTGGAGCATTGAAGCAGACCTCAAAGAAGAGGAAGAAGAAGAAGAAGAAAGATTCGTCTAATTCGGTTCAACTCGGTTGTG : ATAAGTTGAAGGCAAAGACTCTGTTAGGTTCAAAGGAGTATGTTAAGGATGGCGAGTCTGGTCAAATTGGAGCCAAGATTTTTAAATTTCGTGAATTAGCAGTTGCAACAAGAAACTTTCGAGGTGATTGTCTTCTTGGAGAGGGAGGATTCGGAAGAGTATATAAAGGGCGGCTCGATTCCAATCAG : ATTGTTGCCATCAAGCAACTCGATCGTAATGGATTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGCTGATGCTAAGTCTGTTACACCATCCTAACCTGGTAAATTTAACTGGTTATTGCGCTGATGGAGATCAAAGACTTCTGGTTTATGAATATATGCCACTAGGATCACTGGATGACCATCTTCATG : ATCTTACGCCCGGTAAGAAAGTGCTTGATTGGAATACGAGAATGAAAATTGCAGCTGGAGCAGCAAAGGGCTTGGAATATTTACATGACAGAGCAAGTCCACCTGTAATATA</gDNA_template>
            <first_frame> C  E  R  A  F  S  F  F  P  L  S  C  V  G  C  H  S  S  I  L  C  V  Y  I  *  S  I  L  C  I  E  R  E  S  R  R  R  *  E  K  W  V  G  F  H  V  L  E  H  *  S  R  P  Q  R  R  G  R  R  R  R  R  K  I  R  L  I  R  F  N  S  V  V  :  I  S  *  R  Q  R  L  C  *  V  Q  R  S  M  L  R  M  A  S  L  V  K  L  E  P  R  F  L  N  F  V  N  *  Q  L  Q  Q  E  T  F  E  V  I  V  F  L  E  R  E  D  S  E  E  Y  I  K  G  G  S  I  P  I  R :   L  L  P  S  S  N  S  I  V  M  D  C  K  G  T  G  N  F  L  L  K  C  *  C  *  V  C  Y  T  I  L  T  W  *  I  *  L  V  I  A  L  M  E  I  K  D  F  W  F  M  N  I  C  H  *  D  H  W  M  T  I  F  M  :  I  L  R  P  V  R  K  C  L  I  G  I  R  E  *  K  L  Q  L  E  Q  Q  R  A  W  N  I  Y  M  T  E  Q  V  H  L  *  Y  </first_frame>
            <second_frame>  V  K  G  L  F  L  F  S  L  S  R  V  *  G  A  T  L  Q  Y  F  V  Y  I  Y  S  L  Y  Y  V  *  R  E  R  V  E  G  G  E  R  N  G  L  V  S  M  F  W  S  I  E  A  D  L  K  E  E  E  E  E  E  E  E  R  F  V  *  F  G  S  T  R  L  * :   *  V  E  G  K  D  S  V  R  F  K  G  V  C  *  G  W  R  V  W  S  N  W  S  Q  D  F  *  I  S  *  I  S  S  C  N  K  K  L  S  R  *  L  S  S  W  R  G  R  I  R  K  S  I  *  R  A  A  R  F  Q  S   : D  C  C  H  Q  A  T  R  S  *  W  I  A  R  E  Q  G  I  S  C  *  S  A  D  A  K  S  V  T  P  S  *  P  G  K  F  N  W  L  L  R  *  W  R  S  K  T  S  G  L  *  I  Y  A  T  R  I  T  G  *  P  S  S  * :   S  Y  A  R  *  E  S  A  *  L  E  Y  E  N  E  N  C  S  W  S  S  K  G  L  G  I  F  T  *  Q  S  K  S  T  C  N  I </second_frame>
            <third_frame>   *  K  G  F  F  F  F  P  S  L  V  C  R  V  P  L  F  N  T  L  C  I  Y  I  V  Y  I  M  Y  R  E  R  E  *  K  E  V  R  E  M  G  W  F  P  C  S  G  A  L  K  Q  T  S  K  K  R  K  K  K  K  K  K  D  S  S  N  S  V  Q  L  G  C   : D  K  L  K  A  K  T  L  L  G  S  K  E  Y  V  K  D  G  E  S  G  Q  I  G  A  K  I  F  K  F  R  E  L  A  V  A  T  R  N  F  R  G  D  C  L  L  G  E  G  G  F  G  R  V  Y  K  G  R  L  D  S  N  Q  :  I  V  A  I  K  Q  L  D  R  N  G  L  Q  G  N  R  E  F  L  V  E  V  L  M  L  S  L  L  H  H  P  N  L  V  N  L  T  G  Y  C  A  D  G  D  Q  R  L  L  V  Y  E  Y  M  P  L  G  S  L  D  D  H  L  H   : D  L  T  P  G  K  K  V  L  D  W  N  T  R  M  K  I  A  A  G  A  A  K  G  L  E  Y  L  H  D  R  A  S  P  P  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51938" stop="51824"/>
                    <exon start="49696" stop="49509"/>
                    <exon start="47742" stop="47553"/>
                    <exon start="47477" stop="47368"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEVREMGWFPCSGALKQTSKKRKKKKKKDSSNSVQLGCDKLKAKTLLGSKEYVKDGESGQIGAKIFKFRELAVATRNFRGDCLLGEGGFGRVYKGRLDSNQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLTGYCADGDQRLLVYEYMPLGSLDDHLHDLTPGKKVLDWNTRMKIAAGAAKGLEYLHDRASPPVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57359" PGL_stop="54417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57359" e_stop="57010"/>
            <exon e_start="56134" e_stop="55994"/>
            <exon e_start="55295" e_stop="55023"/>
            <exon e_start="54853" e_stop="54417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.917" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57359" e_stop="57010" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.917">
            <gDNA_intron_boundary i_start="57009" i_stop="56135" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56134" e_stop="55994" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55993" i_stop="55296" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55295" e_stop="55023" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="55022" i_stop="54854" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="54853" e_stop="54417" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57359" stop="57010"/>
              <exon start="56134" stop="55994"/>
              <exon start="55295" stop="55023"/>
              <exon start="54853" stop="54417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTTCACTTTTTCTCTTCACACTTCTCAAGAAAAATAACTCCGGGAGAATTTTCCGGCAATGGCGGCCATGATCCGCCTGTTCAGATCTTCATCATCTTCATCATCTCTTATCAGTAGATCTTTATCTACAGCAGCTGCATCTGAGACAGTGAAATCCCGATCTTACCCTCATTCTACAAGTGTTGAACCCAAGGCTAAATCTGTTCAATGGGTCTTTTTGGGTTGTCCTGGTGTCGGAAAAGGTACATATGCTAGCCGTCTCTCAACCCTTTTAGGCGTTCCTCATATTGCTACTGGAGATCTTGTTCGTGATGAGTTGAAATCTTCAGGTCCTTTATCGAAACAA : CTTGCAGAGATTGTCAACCAAGGAAAATTGGTTTCAGATGAGATTATACTGAATCTACTATCCAAAAGGCTTGAGAGTGGGGAAGCTAAGGGTGAAGCTGGATTCATACTTGATGGTTTCCCTAGAACTGTGAGACAAGCA : GAAATATTGACCGAGGTGACAGACATAGATTTGGTGGTTAATCTCAAGCTTCCAGAGCGGGTATTGGTTGAGAAATGCCTTGGCCGAAGAATCTGCAGTGAATGTGGAAAGAATTTCAACGTGGCATCTATAGATGTCGCTGGTGAAAATGGGGCTCCTAGAATCAGCATGGCTCCCCTTAATCCTCCCTCTCAGTGTATATCAAAGTTAATCACTCGAGCAGATGATACAGAAGCCATTGTGAAGGAAAGGCTCAGTATATACTGGGATAAG : AGTCAGCCTGTTGAGGACTTCTACCGTAGCCAAGGTAAGTTACTGGAATTTGATTTACCGGGAGGCATCCCCGAATCATGGCCTAAGTTGCTGGAAGTTCTCAACCTTGATGAACAAGAACATAAACTGTCTGCTGCAGCTTAGTTTCTCTCCGCTGCTTTGCTTGTGTGCTACGCGTTAAACAATTTTGCAGAAAAAAGAACATATTGATTCGTTTCCCTTCTATTTTCCGCTTAAATTTAAGTCAAAATAACAAACCTTTTGAGTGTACTTTGAAGCCGTAACAATACGGTGGCATCCATTGTTGAATTTCGAATTCATATGAAGAGGTCTGTTGTACCATAGTTTCAACTAAAGAGTTATAAAGATGATTATTTTTTTACAGTTGTGTAATAAGCTTATAGTAATTGATAGCATTCTGATTTAATACTTAGGTA</gDNA_template>
            <first_frame> P  F  S  L  F  L  F  T  L  L  K  K  N  N  S  G  R  I  F  R  Q  W  R  P  *  S  A  C  S  D  L  H  H  L  H  H  L  L  S  V  D  L  Y  L  Q  Q  L  H  L  R  Q  *  N  P  D  L  T  L  I  L  Q  V  L  N  P  R  L  N  L  F  N  G  S  F  W  V  V  L  V  S  E  K  V  H  M  L  A  V  S  Q  P  F  *  A  F  L  I  L  L  L  E  I  L  F  V  M  S  *  N  L  Q  V  L  Y  R  N  N :   L  Q  R  L  S  T  K  E  N  W  F  Q  M  R  L  Y  *  I  Y  Y  P  K  G  L  R  V  G  K  L  R  V  K  L  D  S  Y  L  M  V  S  L  E  L  *  D  K  Q :   K  Y  *  P  R  *  Q  T  *  I  W  W  L  I  S  S  F  Q  S  G  Y  W  L  R  N  A  L  A  E  E  S  A  V  N  V  E  R  I  S  T  W  H  L  *  M  S  L  V  K  M  G  L  L  E  S  A  W  L  P  L  I  L  P  L  S  V  Y  Q  S  *  S  L  E  Q  M  I  Q  K  P  L  *  R  K  G  S  V  Y  T  G  I  R :   V  S  L  L  R  T  S  T  V  A  K  V  S  Y  W  N  L  I  Y  R  E  A  S  P  N  H  G  L  S  C  W  K  F  S  T  L  M  N  K  N  I  N  C  L  L  Q  L  S  F  S  P  L  L  C  L  C  A  T  R  *  T  I  L  Q  K  K  E  H  I  D  S  F  P  F  Y  F  P  L  K  F  K  S  K  *  Q  T  F  *  V  Y  F  E  A  V  T  I  R  W  H  P  L  L  N  F  E  F  I  *  R  G  L  L  Y  H  S  F  N  *  R  V  I  K  M  I  I  F  L  Q  L  C  N  K  L  I  V  I  D  S  I  L  I  *  Y  L  G  </first_frame>
            <second_frame>  L  F  H  F  F  S  S  H  F  S  R  K  I  T  P  G  E  F  S  G  N  G  G  H  D  P  P  V  Q  I  F  I  I  F  I  I  S  Y  Q  *  I  F  I  Y  S  S  C  I  *  D  S  E  I  P  I  L  P  S  F  Y  K  C  *  T  Q  G  *  I  C  S  M  G  L  F  G  L  S  W  C  R  K  R  Y  I  C  *  P  S  L  N  P  F  R  R  S  S  Y  C  Y  W  R  S  C  S  *  *  V  E  I  F  R  S  F  I  E  T   : T  C  R  D  C  Q  P  R  K  I  G  F  R  *  D  Y  T  E  S  T  I  Q  K  A  *  E  W  G  S  *  G  *  S  W  I  H  T  *  W  F  P  *  N  C  E  T  S   : R  N  I  D  R  G  D  R  H  R  F  G  G  *  S  Q  A  S  R  A  G  I  G  *  E  M  P  W  P  K  N  L  Q  *  M  W  K  E  F  Q  R  G  I  Y  R  C  R  W  *  K  W  G  S  *  N  Q  H  G  S  P  *  S  S  L  S  V  Y  I  K  V  N  H  S  S  R  *  Y  R  S  H  C  E  G  K  A  Q  Y  I  L  G  *   : E  S  A  C  *  G  L  L  P  *  P  R  *  V  T  G  I  *  F  T  G  R  H  P  R  I  M  A  *  V  A  G  S  S  Q  P  *  *  T  R  T  *  T  V  C  C  S  L  V  S  L  R  C  F  A  C  V  L  R  V  K  Q  F  C  R  K  K  N  I  L  I  R  F  P  S  I  F  R  L  N  L  S  Q  N  N  K  P  F  E  C  T  L  K  P  *  Q  Y  G  G  I  H  C  *  I  S  N  S  Y  E  E  V  C  C  T  I  V  S  T  K  E  L  *  R  *  L  F  F  Y  S  C  V  I  S  L  *  *  L  I  A  F  *  F  N  T  *  V </second_frame>
            <third_frame>   F  F  T  F  S  L  H  T  S  Q  E  K  *  L  R  E  N  F  P  A  M  A  A  M  I  R  L  F  R  S  S  S  S  S  S  S  L  I  S  R  S  L  S  T  A  A  A  S  E  T  V  K  S  R  S  Y  P  H  S  T  S  V  E  P  K  A  K  S  V  Q  W  V  F  L  G  C  P  G  V  G  K  G  T  Y  A  S  R  L  S  T  L  L  G  V  P  H  I  A  T  G  D  L  V  R  D  E  L  K  S  S  G  P  L  S  K  Q  :  L  A  E  I  V  N  Q  G  K  L  V  S  D  E  I  I  L  N  L  L  S  K  R  L  E  S  G  E  A  K  G  E  A  G  F  I  L  D  G  F  P  R  T  V  R  Q  A  :  E  I  L  T  E  V  T  D  I  D  L  V  V  N  L  K  L  P  E  R  V  L  V  E  K  C  L  G  R  R  I  C  S  E  C  G  K  N  F  N  V  A  S  I  D  V  A  G  E  N  G  A  P  R  I  S  M  A  P  L  N  P  P  S  Q  C  I  S  K  L  I  T  R  A  D  D  T  E  A  I  V  K  E  R  L  S  I  Y  W  D  K  :  S  Q  P  V  E  D  F  Y  R  S  Q  G  K  L  L  E  F  D  L  P  G  G  I  P  E  S  W  P  K  L  L  E  V  L  N  L  D  E  Q  E  H  K  L  S  A  A  A  *  F  L  S  A  A  L  L  V  C  Y  A  L  N  N  F  A  E  K  R  T  Y  *  F  V  S  L  L  F  S  A  *  I  *  V  K  I  T  N  L  L  S  V  L  *  S  R  N  N  T  V  A  S  I  V  E  F  R  I  H  M  K  R  S  V  V  P  *  F  Q  L  K  S  Y  K  D  D  Y  F  F  T  V  V  *  *  A  Y  S  N  *  *  H  S  D  L  I  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57318" stop="57010"/>
                    <exon start="56134" stop="55994"/>
                    <exon start="55295" stop="55023"/>
                    <exon start="54853" stop="54710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRENFPAMAAMIRLFRSSSSSSSLISRSLSTAAASETVKSRSYPHSTSVEPKAKSVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPERVLVEKCLGRRICSECGKNFNVASIDVAGENGAPRISMAPLNPPSQCISKLITRADDTEAIVKERLSIYWDKSQPVEDFYRSQGKLLEFDLPGGIPESWPKLLEVLNLDEQEHKLSAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59445" PGL_stop="65048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59445" e_stop="59656"/>
            <exon e_start="61455" e_stop="61596"/>
            <exon e_start="61699" e_stop="61744"/>
            <exon e_start="62187" e_stop="62246"/>
            <exon e_start="62908" e_stop="62944"/>
            <exon e_start="63551" e_stop="63630"/>
            <exon e_start="63734" e_stop="63825"/>
            <exon e_start="64360" e_stop="64420"/>
            <exon e_start="64840" e_stop="65048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59445" e_stop="59656" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59657" i_stop="61454" i_length="1798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61455" e_stop="61596" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.874">
            <gDNA_intron_boundary i_start="61597" i_stop="61698" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61699" e_stop="61744" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61745" i_stop="62186" i_length="442"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62187" e_stop="62246" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.799">
            <gDNA_intron_boundary i_start="62247" i_stop="62907" i_length="661"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62908" e_stop="62944" e_length="37"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.322">
            <gDNA_intron_boundary i_start="62945" i_stop="63550" i_length="606"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63551" e_stop="63630" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.953">
            <gDNA_intron_boundary i_start="63631" i_stop="63733" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63734" e_stop="63825" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="63826" i_stop="64359" i_length="534"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64360" e_stop="64420" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64421" i_stop="64839" i_length="419"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="64840" e_stop="65048" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59445" stop="59656"/>
              <exon start="61455" stop="61596"/>
              <exon start="61699" stop="61744"/>
              <exon start="62187" stop="62246"/>
              <exon start="62908" stop="62944"/>
              <exon start="63551" stop="63630"/>
              <exon start="63734" stop="63825"/>
              <exon start="64360" stop="64414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59522" stop="59656"/>
              <exon start="61455" stop="61596"/>
              <exon start="61699" stop="61744"/>
              <exon start="62187" stop="62246"/>
              <exon start="62908" stop="62944"/>
              <exon start="63551" stop="63630"/>
              <exon start="63734" stop="63825"/>
              <exon start="64360" stop="64420"/>
              <exon start="64840" stop="65048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTCTGTTTTACACTCTTTACGTCAATGGCGATTTCTCTCAATTCTGGTCTTACTGTGGCAGTTAGCAGAAGTATTCGTCAAACCCCACTTCACAATGTTAATTTGACAACAAACCCGTTTAGTTTCAACTGCAATTTCAGCTTAACCCCCAATTTTCTAGCCATTTCTGCCTCCCACAGGTCCTCCTCTGTTATCTACAGCTCCAGAG : AAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGG : ATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAG : GATAAGATGGATGCAGCAGGAGTCGCACTTGTTTTGATTGGACCTGGTAGTGTTGATCAG : GCCAGAAAATTCTACGAGCAAACAAAGTTTAAAGGAG : AGGTTTATGCTGATCCAAGCTATAGGTCTTATGAGGCTCTGAGATTTGTGTCTGGCATTACAACCACATTTACTCCCGGG : GCGGGTCTGAAAATAATACAGGCATACATGGAAGGCTATAGACAAGATTGGGAGCTTTCTTTCGAAAAGGACACCAGGACACGAGGTGGCTG : GCGACAAGGAGGAATTATTGTTGCAGGTCCTGGTAAAAATAACATTACATACATTCACAAG : GACAAAGAAGCAGGTGATGATCCAGATATAAAAGAAATCTTGAATGCTTGCTGTGTACAAGGCTAAATTTAATCAATACAGTCTATATATTATGTGTATATACAGACAATTTGAAGAGATACGTATCTCGATAGACACAAACTAGTACATGAACAATCCACACTTTTGGTTCAAATAAGCAATACTAGAGTTATTATTCCACGAACAAC</gDNA_template>
            <first_frame> N  P  L  F  Y  T  L  Y  V  N  G  D  F  S  Q  F  W  S  Y  C  G  S  *  Q  K  Y  S  S  N  P  T  S  Q  C  *  F  D  N  K  P  V  *  F  Q  L  Q  F  Q  L  N  P  Q  F  S  S  H  F  C  L  P  Q  V  L  L  C  Y  L  Q  L  Q  R :   N  *  D  S  S  G  E  *  G  H  H  Q  C  V  G  R  C  S  S  I  *  S  E  W  T  R  S  T  Y  F  G  F  V  E  R  *  E  G  S  C  C  L  C  S  S  F  W  :  M  R  P  L  S  H  K  S  *  L  S  C  S  *  E   : G  *  D  G  C  S  R  S  R  T  C  F  D  W  T  W  *  C  *  S   : G  Q  K  I  L  R  A  N  K  V  *  R  R :   G  L  C  *  S  K  L  *  V  L  *  G  S  E  I  C  V  W  H  Y  N  H  I  Y  S  R   : G  G  S  E  N  N  T  G  I  H  G  R  L  *  T  R  L  G  A  F  F  R  K  G  H  Q  D  T  R  W  L  :  A  T  R  R  N  Y  C  C  R  S  W  *  K  *  H  Y  I  H  S  Q   : G  Q  R  S  R  *  *  S  R  Y  K  R  N  L  E  C  L  L  C  T  R  L  N  L  I  N  T  V  Y  I  L  C  V  Y  T  D  N  L  K  R  Y  V  S  R  *  T  Q  T  S  T  *  T  I  H  T  F  G  S  N  K  Q  Y  *  S  Y  Y  S  T  N  N </first_frame>
            <second_frame>  I  L  C  F  T  L  F  T  S  M  A  I  S  L  N  S  G  L  T  V  A  V  S  R  S  I  R  Q  T  P  L  H  N  V  N  L  T  T  N  P  F  S  F  N  C  N  F  S  L  T  P  N  F  L  A  I  S  A  S  H  R  S  S  S  V  I  Y  S  S  R   : E  T  E  T  P  V  V  S  E  D  T  I  N  V  L  D  D  V  Q  V  F  D  L  N  G  Q  G  V  P  I  S  D  L  W  K  D  R  K  A  V  V  A  F  A  R  H  F  G :   C  V  L  C  R  I  R  A  D  Y  L  A  A  E  K  :  D  K  M  D  A  A  G  V  A  L  V  L  I  G  P  G  S  V  D  Q  :  A  R  K  F  Y  E  Q  T  K  F  K  G   : E  V  Y  A  D  P  S  Y  R  S  Y  E  A  L  R  F  V  S  G  I  T  T  T  F  T  P  G  :  A  G  L  K  I  I  Q  A  Y  M  E  G  Y  R  Q  D  W  E  L  S  F  E  K  D  T  R  T  R  G  G  W :   R  Q  G  G  I  I  V  A  G  P  G  K  N  N  I  T  Y  I  H  K  :  D  K  E  A  G  D  D  P  D  I  K  E  I  L  N  A  C  C  V  Q  G  *  I  *  S  I  Q  S  I  Y  Y  V  Y  I  Q  T  I  *  R  D  T  Y  L  D  R  H  K  L  V  H  E  Q  S  T  L  L  V  Q  I  S  N  T  R  V  I  I  P  R  T   </second_frame>
            <third_frame>   S  S  V  L  H  S  L  R  Q  W  R  F  L  S  I  L  V  L  L  W  Q  L  A  E  V  F  V  K  P  H  F  T  M  L  I  *  Q  Q  T  R  L  V  S  T  A  I  S  A  *  P  P  I  F  *  P  F  L  P  P  T  G  P  P  L  L  S  T  A  P  E  :  K  L  R  L  Q  W  *  V  R  T  P  S  M  C  W  T  M  F  K  Y  L  I  *  M  D  K  E  Y  L  F  R  I  C  G  K  I  G  R  Q  L  L  P  L  L  V  I  L   : D  A  S  F  V  A  *  E  L  I  I  L  Q  L  R  R :   I  R  W  M  Q  Q  E  S  H  L  F  *  L  D  L  V  V  L  I  R :   P  E  N  S  T  S  K  Q  S  L  K  E  :  R  F  M  L  I  Q  A  I  G  L  M  R  L  *  D  L  C  L  A  L  Q  P  H  L  L  P  G :   R  V  *  K  *  Y  R  H  T  W  K  A  I  D  K  I  G  S  F  L  S  K  R  T  P  G  H  E  V  A   : G  D  K  E  E  L  L  L  Q  V  L  V  K  I  T  L  H  T  F  T  R :   T  K  K  Q  V  M  I  Q  I  *  K  K  S  *  M  L  A  V  Y  K  A  K  F  N  Q  Y  S  L  Y  I  M  C  I  Y  R  Q  F  E  E  I  R  I  S  I  D  T  N  *  Y  M  N  N  P  H  F  W  F  K  *  A  I  L  E  L  L  F  H  E  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59446" stop="59656"/>
                    <exon start="61455" stop="61596"/>
                    <exon start="61699" stop="61744"/>
                    <exon start="62187" stop="62246"/>
                    <exon start="62908" stop="62944"/>
                    <exon start="63551" stop="63630"/>
                    <exon start="63734" stop="63825"/>
                    <exon start="64360" stop="64420"/>
                    <exon start="64840" stop="64905"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCFTLFTSMAISLNSGLTVAVSRSIRQTPLHNVNLTTNPFSFNCNFSLTPNFLAISASHRSSSVIYSSRETETPVVSEDTINVLDDVQVFDLNGQGVPISDLWKDRKAVVAFARHFGCVLCRIRADYLAAEKDKMDAAGVALVLIGPGSVDQARKFYEQTKFKGEVYADPSYRSYEALRFVSGITTTFTPGAGLKIIQAYMEGYRQDWELSFEKDTRTRGGWRQGGIIVAGPGKNNITYIHKDKEAGDDPDIKEILNACCVQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61275" e_stop="61957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="61275" e_stop="61957" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61275" stop="61957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGTATCTACACAGTTTGTCCTTCAAAGCTTGGGCAGATGAGAAAAAATCACCTAGTGTTTTAGCCTCCGTTAGGAACTGAACCTCAGACCTCATGGTTCTCAATACACTTCATTGACTACTAATGATAATTAAGATGTTTAGTTTTGTTAATAAATATTAGAGTATTGATTGAAATAGAAACTGAGACTCCAGTGGTGAGTGAGGACACCATCAATGTGTTGGACGATGTTCAAGTATTTGATCTGAATGGACAAGGAGTACCTATTTCGGATTTGTGGAAAGATAGGAAGGCAGTTGTTGCCTTTGCTCGTCATTTTGGGTAATCTTTCCATGCCCTTATGCTCTATTTCTTCCAAAACTGGTAATCAAAAAGCATGTTATTGGTGAAGTATGTGCTACTTATTCTAGATCCCGATTGCAGATGCGTCCTTTGTCGCATAAGAGCTGATTATCTTGCAGCTGAGAAGGTAATGCTTCTTCTTGACTACATTTACGAATGTTATCATGTTTTTCTTCCATGTGTTCTGCTGAAACTATCCCAAAGCTGACTAATGTATTTCCAGGTCCAAATGACTTGTCTTAGTATCCTTGTTTGATGTTGGTGAGTTAAGTCGTGGGAATAACATAAGTTGCAGTGTCTACTATAACGTACATATCATAGTTTACAGACCATACTTTCC</gDNA_template>
            <first_frame> H  V  S  T  Q  F  V  L  Q  S  L  G  R  *  E  K  I  T  *  C  F  S  L  R  *  E  L  N  L  R  P  H  G  S  Q  Y  T  S  L  T  T  N  D  N  *  D  V  *  F  C  *  *  I  L  E  Y  *  L  K  *  K  L  R  L  Q  W  *  V  R  T  P  S  M  C  W  T  M  F  K  Y  L  I  *  M  D  K  E  Y  L  F  R  I  C  G  K  I  G  R  Q  L  L  P  L  L  V  I  L  G  N  L  S  M  P  L  C  S  I  S  S  K  T  G  N  Q  K  A  C  Y  W  *  S  M  C  Y  L  F  *  I  P  I  A  D  A  S  F  V  A  *  E  L  I  I  L  Q  L  R  R  *  C  F  F  L  T  T  F  T  N  V  I  M  F  F  F  H  V  F  C  *  N  Y  P  K  A  D  *  C  I  S  R  S  K  *  L  V  L  V  S  L  F  D  V  G  E  L  S  R  G  N  N  I  S  C  S  V  Y  Y  N  V  H  I  I  V  Y  R  P  Y  F   </first_frame>
            <second_frame>  T  Y  L  H  S  L  S  F  K  A  W  A  D  E  K  K  S  P  S  V  L  A  S  V  R  N  *  T  S  D  L  M  V  L  N  T  L  H  *  L  L  M  I  I  K  M  F  S  F  V  N  K  Y  *  S  I  D  *  N  R  N  *  D  S  S  G  E  *  G  H  H  Q  C  V  G  R  C  S  S  I  *  S  E  W  T  R  S  T  Y  F  G  F  V  E  R  *  E  G  S  C  C  L  C  S  S  F  W  V  I  F  P  C  P  Y  A  L  F  L  P  K  L  V  I  K  K  H  V  I  G  E  V  C  A  T  Y  S  R  S  R  L  Q  M  R  P  L  S  H  K  S  *  L  S  C  S  *  E  G  N  A  S  S  *  L  H  L  R  M  L  S  C  F  S  S  M  C  S  A  E  T  I  P  K  L  T  N  V  F  P  G  P  N  D  L  S  *  Y  P  C  L  M  L  V  S  *  V  V  G  I  T  *  V  A  V  S  T  I  T  Y  I  S  *  F  T  D  H  T  F  </second_frame>
            <third_frame>   R  I  Y  T  V  C  P  S  K  L  G  Q  M  R  K  N  H  L  V  F  *  P  P  L  G  T  E  P  Q  T  S  W  F  S  I  H  F  I  D  Y  *  *  *  L  R  C  L  V  L  L  I  N  I  R  V  L  I  E  I  E  T  E  T  P  V  V  S  E  D  T  I  N  V  L  D  D  V  Q  V  F  D  L  N  G  Q  G  V  P  I  S  D  L  W  K  D  R  K  A  V  V  A  F  A  R  H  F  G  *  S  F  H  A  L  M  L  Y  F  F  Q  N  W  *  S  K  S  M  L  L  V  K  Y  V  L  L  I  L  D  P  D  C  R  C  V  L  C  R  I  R  A  D  Y  L  A  A  E  K  V  M  L  L  L  D  Y  I  Y  E  C  Y  H  V  F  L  P  C  V  L  L  K  L  S  Q  S  *  L  M  Y  F  Q  V  Q  M  T  C  L  S  I  L  V  *  C  W  *  V  K  S  W  E  *  H  K  L  Q  C  L  L  *  R  T  Y  H  S  L  Q  T  I  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61406" stop="61600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRCLVLLINIRVLIEIETETPVVSEDTINVLDDVQVFDLNGQGVPISDLWKDRKAVVAFARHFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69695" PGL_stop="70034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69695" e_stop="69873"/>
            <exon e_start="69974" e_stop="70034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.138" e_score="0.972"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="69695" e_stop="69873" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.138">
            <gDNA_intron_boundary i_start="69874" i_stop="69973" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="69974" e_stop="70034" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69695" stop="69873"/>
              <exon start="69974" stop="70034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTACTCTCCCGCCCAACTCCTCCCCTACTCCGCCGCCGCACCACCGTCACTACCGCCGCACCACCGCCAAGCCCAAACGAAAGCCCACTCATTCTCCGTCTCATTTCACTTCATCCATCACTACTCCTCAATCTCCGCTTCTATCCTCATTGCGATGGGATTCCGCTTCCGCCTCAG : CTGTAATGGTCTTAAATACTATGCTGAGTTGGCGTCTAAGCTAGCGCAGGATGGGAGGTTT</gDNA_template>
            <first_frame> D  Y  S  P  A  Q  L  L  P  Y  S  A  A  A  P  P  S  L  P  P  H  H  R  Q  A  Q  T  K  A  H  S  F  S  V  S  F  H  F  I  H  H  Y  S  S  I  S  A  S  I  L  I  A  M  G  F  R  F  R  L  S :   C  N  G  L  K  Y  Y  A  E  L  A  S  K  L  A  Q  D  G  R  F </first_frame>
            <second_frame>  I  T  L  P  P  N  S  S  P  T  P  P  P  H  H  R  H  Y  R  R  T  T  A  K  P  K  R  K  P  T  H  S  P  S  H  F  T  S  S  I  T  T  P  Q  S  P  L  L  S  S  L  R  W  D  S  A  S  A  S   : A  V  M  V  L  N  T  M  L  S  W  R  L  S  *  R  R  M  G  G   </second_frame>
            <third_frame>   L  L  S  R  P  T  P  P  L  L  R  R  R  T  T  V  T  T  A  A  P  P  P  S  P  N  E  S  P  L  I  L  R  L  I  S  L  H  P  S  L  L  L  N  L  R  F  Y  P  H  C  D  G  I  P  L  P  P  Q  :  L  *  W  S  *  I  L  C  *  V  G  V  *  A  S  A  G  W  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69695" stop="69873"/>
                    <exon start="69974" stop="70034"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYSPAQLLPYSAAAPPSLPPHHRQAQTKAHSFSVSFHFIHHYSSISASILIAMGFRFRLSCNGLKYYAELASKLAQDGRF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69696" stop="69873"/>
                    <exon start="69974" stop="70017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLPPNSSPTPPPHHRHYRRTTAKPKRKPTHSPSHFTSSITTPQSPLLSSLRWDSASASAVMVLNTMLSWRLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76331" PGL_stop="79469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76331" e_stop="76349"/>
            <exon e_start="76445" e_stop="76525"/>
            <exon e_start="76714" e_stop="76811"/>
            <exon e_start="78482" e_stop="78689"/>
            <exon e_start="78773" e_stop="78833"/>
            <exon e_start="78972" e_stop="79469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.561" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.461" acc_prob="0.991" e_score="0.934"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76331" e_stop="76349" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.561" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76350" i_stop="76444" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76445" e_stop="76525" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.880">
            <gDNA_intron_boundary i_start="76526" i_stop="76713" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76714" e_stop="76811" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.737">
            <gDNA_intron_boundary i_start="76812" i_stop="78481" i_length="1670"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78482" e_stop="78689" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78690" i_stop="78772" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.934">
            <gDNA_exon_boundary e_start="78773" e_stop="78833" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.461" acc_prob="0.991">
            <gDNA_intron_boundary i_start="78834" i_stop="78971" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="78972" e_stop="79469" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76331" stop="76349"/>
              <exon start="76445" stop="76525"/>
              <exon start="76714" stop="76811"/>
              <exon start="78482" stop="78689"/>
              <exon start="78773" stop="78833"/>
              <exon start="78972" stop="79276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79061" stop="79469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATACAACAATTATCAAG : GTTTGCGTGGAAAATAAAGATTTCAAGAGTGCATTTTCATTATTTGCAGCAATGAAGAGATATCAGATAAAACCAAATATG : GTCACATATAATACACTTCTTAGAGCTCGTAGCCGATATGGATCTTTGCAGGAGGTACAACAATGCTTAGCTATATATCAAGATATGCGGAAAGCAGG : GTACAAACCCAACGATTACTATCTCAAGCAATTAATTGAGCAGTGGTGTGAAGGCGTAATACAGAATGCCAATCAGAGGAAATACAACTTCAGCACTCGTAATAGAACTGATTTAGGGCCTCAAAGTATGATTCTGGAGAAAGTTGCAGAACACTTGCAGAAGGACAGTGCAAACAGCATCTCCATTAATCTCCGAGGGCTTACTAAG : GTTGAAGCTAGGATTGTGGTTCTTGCGGTTTTGAGAATGATCAGAGAGAAGTACACTGCAG : GAGATTCAATCAAAGATGATGTGCAAATCTTTCTAGGAGTCAAAGAAGTAGGTATACGTGCTGTCAAACAAGAAAGTGTCGTTAAGGAAGCAATAATACAACTATTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATAAACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACGACCAAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAAAAATGAGGATAACTAAGGAGTCACTGCAATCCTGGCTAACAAGAAGGTTAGATGCTTCTGTAGTGCAATGATATACGAAACATGATATGTATAGATTTATACGAACTCTTTCTTTTCGTAGAGTTCTTTCATCCCTTTAACAGCCGAATAAACACTGTATATTCAATGATATACCACATGCTAAAAACTTCACATTTTACCATCAAATGTAAACAAAAGTAACAAAAGAAA</gDNA_template>
            <first_frame> L  Y  N  N  Y  Q   : G  L  R  G  K  *  R  F  Q  E  C  I  F  I  I  C  S  N  E  E  I  S  D  K  T  K  Y   : G  H  I  *  Y  T  S  *  S  S  *  P  I  W  I  F  A  G  G  T  T  M  L  S  Y  I  S  R  Y  A  E  S  R  :  V  Q  T  Q  R  L  L  S  Q  A  I  N  *  A  V  V  *  R  R  N  T  E  C  Q  S  E  E  I  Q  L  Q  H  S  *  *  N  *  F  R  A  S  K  Y  D  S  G  E  S  C  R  T  L  A  E  G  Q  C  K  Q  H  L  H  *  S  P  R  A  Y  *   : G  *  S  *  D  C  G  S  C  G  F  E  N  D  Q  R  E  V  H  C  R :   R  F  N  Q  R  *  C  A  N  L  S  R  S  Q  R  S  R  Y  T  C  C  Q  T  R  K  C  R  *  G  S  N  N  T  T  I  A  T  *  F  G  T  *  G  N  F  S  S  I  N  N  W  K  W  D  K  P  S  R  Q  Q  A  F  K  H  G  R  K  C  R  K  S  H  S  T  T  K  R  V  L  S  N  K  E  T  S  G  F  A  K  N  E  D  N  *  G  V  T  A  I  L  A  N  K  K  V  R  C  F  C  S  A  M  I  Y  E  T  *  Y  V  *  I  Y  T  N  S  F  F  S  *  S  S  F  I  P  L  T  A  E  *  T  L  Y  I  Q  *  Y  T  T  C  *  K  L  H  I  L  P  S  N  V  N  K  S  N  K  R   </first_frame>
            <second_frame>  Y  T  T  I  I  K  :  V  C  V  E  N  K  D  F  K  S  A  F  S  L  F  A  A  M  K  R  Y  Q  I  K  P  N  M  :  V  T  Y  N  T  L  L  R  A  R  S  R  Y  G  S  L  Q  E  V  Q  Q  C  L  A  I  Y  Q  D  M  R  K  A  G :   Y  K  P  N  D  Y  Y  L  K  Q  L  I  E  Q  W  C  E  G  V  I  Q  N  A  N  Q  R  K  Y  N  F  S  T  R  N  R  T  D  L  G  P  Q  S  M  I  L  E  K  V  A  E  H  L  Q  K  D  S  A  N  S  I  S  I  N  L  R  G  L  T  K  :  V  E  A  R  I  V  V  L  A  V  L  R  M  I  R  E  K  Y  T  A   : G  D  S  I  K  D  D  V  Q  I  F  L  G  V  K  E  V  G  I  R  A  V  K  Q  E  S  V  V  K  E  A  I  I  Q  L  L  Q  H  D  L  G  L  E  V  I  S  A  A  S  T  I  G  N  G  I  N  H  P  D  N  K  H  S  N  M  E  E  N  A  E  R  V  I  L  R  P  S  V  Y  S  P  T  R  K  P  V  V  L  Q  K  M  R  I  T  K  E  S  L  Q  S  W  L  T  R  R  L  D  A  S  V  V  Q  *  Y  T  K  H  D  M  Y  R  F  I  R  T  L  S  F  R  R  V  L  S  S  L  *  Q  P  N  K  H  C  I  F  N  D  I  P  H  A  K  N  F  T  F  Y  H  Q  M  *  T  K  V  T  K  E  </second_frame>
            <third_frame>   I  Q  Q  L  S  R :   F  A  W  K  I  K  I  S  R  V  H  F  H  Y  L  Q  Q  *  R  D  I  R  *  N  Q  I  W :   S  H  I  I  H  F  L  E  L  V  A  D  M  D  L  C  R  R  Y  N  N  A  *  L  Y  I  K  I  C  G  K  Q   : G  T  N  P  T  I  T  I  S  S  N  *  L  S  S  G  V  K  A  *  Y  R  M  P  I  R  G  N  T  T  S  A  L  V  I  E  L  I  *  G  L  K  V  *  F  W  R  K  L  Q  N  T  C  R  R  T  V  Q  T  A  S  P  L  I  S  E  G  L  L  R :   L  K  L  G  L  W  F  L  R  F  *  E  *  S  E  R  S  T  L  Q  :  E  I  Q  S  K  M  M  C  K  S  F  *  E  S  K  K  *  V  Y  V  L  S  N  K  K  V  S  L  R  K  Q  *  Y  N  Y  C  N  M  I  W  D  L  R  *  F  Q  Q  H  Q  Q  L  E  M  G  *  T  I  Q  T  T  S  I  Q  T  W  K  K  M  Q  K  E  S  F  Y  D  Q  A  C  T  L  Q  Q  G  N  Q  W  F  C  K  K  *  G  *  L  R  S  H  C  N  P  G  *  Q  E  G  *  M  L  L  *  C  N  D  I  R  N  M  I  C  I  D  L  Y  E  L  F  L  F  V  E  F  F  H  P  F  N  S  R  I  N  T  V  Y  S  M  I  Y  H  M  L  K  T  S  H  F  T  I  K  C  K  Q  K  *  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76349"/>
                    <exon start="76445" stop="76525"/>
                    <exon start="76714" stop="76811"/>
                    <exon start="78482" stop="78689"/>
                    <exon start="78773" stop="78833"/>
                    <exon start="78972" stop="79309"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTTIIKVCVENKDFKSAFSLFAAMKRYQIKPNMVTYNTLLRARSRYGSLQEVQQCLAIYQDMRKAGYKPNDYYLKQLIEQWCEGVIQNANQRKYNFSTRNRTDLGPQSMILEKVAEHLQKDSANSISINLRGLTKVEARIVVLAVLRMIREKYTAGDSIKDDVQIFLGVKEVGIRAVKQESVVKEAIIQLLQHDLGLEVISAASTIGNGINHPDNKHSNMEENAERVILRPSVYSPTRKPVVLQKMRITKESLQSWLTRRLDASVVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="85324" PGL_stop="91096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85324" e_stop="85630"/>
            <exon e_start="86826" e_stop="86910"/>
            <exon e_start="87665" e_stop="87805"/>
            <exon e_start="87918" e_stop="88015"/>
            <exon e_start="88879" e_stop="89064"/>
            <exon e_start="89174" e_stop="89304"/>
            <exon e_start="89421" e_stop="89520"/>
            <exon e_start="90513" e_stop="91096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="85324" e_stop="85630" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85631" i_stop="86825" i_length="1195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86826" e_stop="86910" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86911" i_stop="87664" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87665" e_stop="87805" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.852" acc_prob="0.973">
            <gDNA_intron_boundary i_start="87806" i_stop="87917" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87918" e_stop="88015" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.762" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88016" i_stop="88878" i_length="863"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="88879" e_stop="89064" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="89065" i_stop="89173" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89174" e_stop="89304" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="89305" i_stop="89420" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89421" e_stop="89520" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="89521" i_stop="90512" i_length="992"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="90513" e_stop="91096" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85324" stop="85630"/>
              <exon start="86826" stop="86910"/>
              <exon start="87665" stop="87805"/>
              <exon start="87918" stop="88015"/>
              <exon start="88879" stop="89064"/>
              <exon start="89174" stop="89304"/>
              <exon start="89421" stop="89520"/>
              <exon start="90513" stop="91096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTCACACAGAGAACCCAATCTCCGCCTCCGGCCACACTCTTAATTTATCGTCCTAGGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTATCGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGACGTTCGGTCTTAAGAATAAGAACAAGTCGAAGAATGTTCAGAAATATGTTCAGTCTTTACAGCAAAATGTTGTGCCTAAAGCTGATCCTAAGAAACTTGACGCCAAG : AAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTAG : GTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCAGCGAAAAGGAGAGAAGATTGATATTTTCAGCGATAAGCGTGATGAAG : ATGGAAAGGAAACAATGGACGATTGGGATCAAGAGACACTGGAGAAGGTTGTGGCGTCAAAAAGTCAAGAGTATAACAAGAACAAACCAACTGACATT : GTATGTAAATTCTTTTTGGATGCTGTGGAGAAAAAGCAGTACGGTTGGTTCTGGGCCTGTCCAAATGGTAAAGAATGCCATTACAGGCATGCACTTCCTCCTGGATATATTCTCAAGTCACAAATGAAAGCCTTGTTACAAGAGGAAGCTGACAAGATGCCTATTGAAGAAGAAATTGATCAACAG : CGTGCAAAATTGACTGCTTCAACTCCCTTGACCACTGAATTATTTATGGAATGGAAAAAAAAGAAGACGGAAGAAAGAGAGGCCAATTTGGCCAAACAGAGGGCAGATAGAGCTAAGAATGATCGCATGAG : TGGTCGTGAGTTGTTCATGTCGGATGCTAGTTGGTTTGTGGATGATGTGGGGGCCTATGACAAGTATGATAGGGAAGAAGAGTCTGCTGAACTCCCAAAG : GAGAATAAGGATTCTGCTAGGGAAGAGGCAAGCTCCTCGACATCAGCCCAGAAGAATATTCATGATGGTGGTGAGGCTTCACATAAAGACCAAGTGGATGACATTTATGACGACGACGATGATGATGATGACTTTGATGTGGATGAGTTAAATGAACTGGAAGCTAGCCTTTCAAAAACATCGTTACAAATCAATGAACCTGGTAGTCGCGCTTGATCCTTGGGCCCAAAATCTATGCACATGGTATACACTTATCAGTGCATGCACTTTCATGTCTACGTGATGCAAAATCATGTTGGCGTGCAGCAGCAGATAAAATGGAATGAAATGTAAGCATATCCCTGTCGTGACGCCTTAATAATTGATCCTCTATTTTATTAGGTTTTTACCCTTATTTCTAATGAGTTGTGACTTCTTTCTTTCCAGAATTTTTGATGAATTTAACTTGTCTGGTTGTTTTGCTGTCACATAAGAGAGCTATCCTTTGTATTTTACTACTACTACTATGCTTTGAAGTGTGTTGCCTTCTCATTGCCCTTTATAATGATTCTACTACTATAGGCGTAGTAAAAAACTTTTGATCG</gDNA_template>
            <first_frame> P  S  H  T  E  N  P  I  S  A  S  G  H  T  L  N  L  S  S  *  G  F  Q  S  P  E  K  K  F  D  F  P  T  N  L  S  R  *  L  R  I  W  M  R  I  Q  D  A  A  K  A  I  *  S  R  Y  C  K  E  A  E  G  S  *  R  Q  D  V  R  S  *  E  *  E  Q  V  E  E  C  S  E  I  C  S  V  F  T  A  K  C  C  A  *  S  *  S  *  E  T  *  R  Q   : E  K  E  G  R  R  E  S  *  R  E  R  A  *  R  I  V  Q  S  R  Y  *  P  T  *  S  A  S  R :   C  *  S  K  I  Y  F  M  *  V  L  *  G  G  A  M  C  *  G  F  *  V  Q  V  L  S  R  S  E  C  S  A  K  R  R  E  D  *  Y  F  Q  R  *  A  *  *  R :   W  K  G  N  N  G  R  L  G  S  R  D  T  G  E  G  C  G  V  K  K  S  R  V  *  Q  E  Q  T  N  *  H   : C  M  *  I  L  F  G  C  C  G  E  K  A  V  R  L  V  L  G  L  S  K  W  *  R  M  P  L  Q  A  C  T  S  S  W  I  Y  S  Q  V  T  N  E  S  L  V  T  R  G  S  *  Q  D  A  Y  *  R  R  N  *  S  T   : A  C  K  I  D  C  F  N  S  L  D  H  *  I  I  Y  G  M  E  K  K  E  D  G  R  K  R  G  Q  F  G  Q  T  E  G  R  *  S  *  E  *  S  H  E  :  W  S  *  V  V  H  V  G  C  *  L  V  C  G  *  C  G  G  L  *  Q  V  *  *  G  R  R  V  C  *  T  P  K   : G  E  *  G  F  C  *  G  R  G  K  L  L  D  I  S  P  E  E  Y  S  *  W  W  *  G  F  T  *  R  P  S  G  *  H  L  *  R  R  R  *  *  *  *  L  *  C  G  *  V  K  *  T  G  S  *  P  F  K  N  I  V  T  N  Q  *  T  W  *  S  R  L  I  L  G  P  K  I  Y  A  H  G  I  H  L  S  V  H  A  L  S  C  L  R  D  A  K  S  C  W  R  A  A  A  D  K  M  E  *  N  V  S  I  S  L  S  *  R  L  N  N  *  S  S  I  L  L  G  F  Y  P  Y  F  *  *  V  V  T  S  F  F  P  E  F  L  M  N  L  T  C  L  V  V  L  L  S  H  K  R  A  I  L  C  I  L  L  L  L  L  C  F  E  V  C  C  L  L  I  A  L  Y  N  D  S  T  T  I  G  V  V  K  N  F  *  S </first_frame>
            <second_frame>  L  L  T  Q  R  T  Q  S  P  P  P  A  T  L  L  I  Y  R  P  R  V  F  S  R  R  K  R  N  S  I  F  R  R  I  Y  R  G  D  *  G  F  G  *  E  Y  K  M  P  P  K  Q  S  K  A  D  I  A  K  K  Q  K  V  V  E  D  K  T  F  G  L  K  N  K  N  K  S  K  N  V  Q  K  Y  V  Q  S  L  Q  Q  N  V  V  P  K  A  D  P  K  K  L  D  A  K  :  K  K  K  E  E  E  K  A  R  E  K  E  L  S  E  L  F  K  V  A  I  S  Q  P  K  V  P  L   : G  V  D  P  K  S  I  L  C  E  F  F  K  A  G  Q  C  V  K  G  F  K  C  K  F  S  H  D  L  N  V  Q  R  K  G  E  K  I  D  I  F  S  D  K  R  D  E   : D  G  K  E  T  M  D  D  W  D  Q  E  T  L  E  K  V  V  A  S  K  S  Q  E  Y  N  K  N  K  P  T  D  I  :  V  C  K  F  F  L  D  A  V  E  K  K  Q  Y  G  W  F  W  A  C  P  N  G  K  E  C  H  Y  R  H  A  L  P  P  G  Y  I  L  K  S  Q  M  K  A  L  L  Q  E  E  A  D  K  M  P  I  E  E  E  I  D  Q  Q  :  R  A  K  L  T  A  S  T  P  L  T  T  E  L  F  M  E  W  K  K  K  K  T  E  E  R  E  A  N  L  A  K  Q  R  A  D  R  A  K  N  D  R  M  S :   G  R  E  L  F  M  S  D  A  S  W  F  V  D  D  V  G  A  Y  D  K  Y  D  R  E  E  E  S  A  E  L  P  K  :  E  N  K  D  S  A  R  E  E  A  S  S  S  T  S  A  Q  K  N  I  H  D  G  G  E  A  S  H  K  D  Q  V  D  D  I  Y  D  D  D  D  D  D  D  D  F  D  V  D  E  L  N  E  L  E  A  S  L  S  K  T  S  L  Q  I  N  E  P  G  S  R  A  *  S  L  G  P  K  S  M  H  M  V  Y  T  Y  Q  C  M  H  F  H  V  Y  V  M  Q  N  H  V  G  V  Q  Q  Q  I  K  W  N  E  M  *  A  Y  P  C  R  D  A  L  I  I  D  P  L  F  Y  *  V  F  T  L  I  S  N  E  L  *  L  L  S  F  Q  N  F  *  *  I  *  L  V  W  L  F  C  C  H  I  R  E  L  S  F  V  F  Y  Y  Y  Y  Y  A  L  K  C  V  A  F  S  L  P  F  I  M  I  L  L  L  *  A  *  *  K  T  F  D   </second_frame>
            <third_frame>   F  S  H  R  E  P  N  L  R  L  R  P  H  S  *  F  I  V  L  G  F  S  V  A  G  K  E  I  R  F  S  D  E  S  I  E  V  I  E  D  L  D  E  N  T  R  C  R  Q  S  N  L  K  P  I  L  Q  R  S  R  R  *  L  K  T  R  R  S  V  L  R  I  R  T  S  R  R  M  F  R  N  M  F  S  L  Y  S  K  M  L  C  L  K  L  I  L  R  N  L  T  P  R :   K  R  R  K  K  R  K  L  E  R  K  S  L  A  N  C  S  K  S  L  L  A  N  L  K  C  L  *  :  V  L  I  Q  N  L  F  Y  V  S  S  L  R  R  G  N  V  L  R  V  L  S  A  S  S  L  T  I  *  M  F  S  E  K  E  R  R  L  I  F  S  A  I  S  V  M  K  :  M  E  R  K  Q  W  T  I  G  I  K  R  H  W  R  R  L  W  R  Q  K  V  K  S  I  T  R  T  N  Q  L  T  L :   Y  V  N  S  F  W  M  L  W  R  K  S  S  T  V  G  S  G  P  V  Q  M  V  K  N  A  I  T  G  M  H  F  L  L  D  I  F  S  S  H  K  *  K  P  C  Y  K  R  K  L  T  R  C  L  L  K  K  K  L  I  N  S :   V  Q  N  *  L  L  Q  L  P  *  P  L  N  Y  L  W  N  G  K  K  R  R  R  K  K  E  R  P  I  W  P  N  R  G  Q  I  E  L  R  M  I  A  *   : V  V  V  S  C  S  C  R  M  L  V  G  L  W  M  M  W  G  P  M  T  S  M  I  G  K  K  S  L  L  N  S  Q  R :   R  I  R  I  L  L  G  K  R  Q  A  P  R  H  Q  P  R  R  I  F  M  M  V  V  R  L  H  I  K  T  K  W  M  T  F  M  T  T  T  M  M  M  M  T  L  M  W  M  S  *  M  N  W  K  L  A  F  Q  K  H  R  Y  K  S  M  N  L  V  V  A  L  D  P  W  A  Q  N  L  C  T  W  Y  T  L  I  S  A  C  T  F  M  S  T  *  C  K  I  M  L  A  C  S  S  R  *  N  G  M  K  C  K  H  I  P  V  V  T  P  *  *  L  I  L  Y  F  I  R  F  L  P  L  F  L  M  S  C  D  F  F  L  S  R  I  F  D  E  F  N  L  S  G  C  F  A  V  T  *  E  S  Y  P  L  Y  F  T  T  T  T  M  L  *  S  V  L  P  S  H  C  P  L  *  *  F  Y  Y  Y  R  R  S  K  K  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85454" stop="85630"/>
                    <exon start="86826" stop="86910"/>
                    <exon start="87665" stop="87805"/>
                    <exon start="87918" stop="88015"/>
                    <exon start="88879" stop="89064"/>
                    <exon start="89174" stop="89304"/>
                    <exon start="89421" stop="89520"/>
                    <exon start="90513" stop="90728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYKMPPKQSKADIAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLQQNVVPKADPKKLDAKKKKEEEKAREKELSELFKVAISQPKVPLGVDPKSILCEFFKAGQCVKGFKCKFSHDLNVQRKGEKIDIFSDKRDEDGKETMDDWDQETLEKVVASKSQEYNKNKPTDIVCKFFLDAVEKKQYGWFWACPNGKECHYRHALPPGYILKSQMKALLQEEADKMPIEEEIDQQRAKLTASTPLTTELFMEWKKKKTEEREANLAKQRADRAKNDRMSGRELFMSDASWFVDDVGAYDKYDREEESAELPKENKDSAREEASSSTSAQKNIHDGGEASHKDQVDDIYDDDDDDDDFDVDELNELEASLSKTSLQINEPGSRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="101009" PGL_stop="103526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101009" e_stop="102181"/>
            <exon e_start="103202" e_stop="103526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="101009" e_stop="102181" e_length="1173"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102182" i_stop="103201" i_length="1020"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="103202" e_stop="103526" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101009" stop="102181"/>
              <exon start="103202" stop="103526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCTCTTTAAGGTTTCAATTCTACCGAAAAACCCTAGCAGCCCCCCCCCCCCTACCCCTGCAATGGCCACCGCTGCCGCCATCCCAACCACCACCGTGCAAAGCCTGGAAAATGATATGGCCACTGACAGCGCCGCCGTTCCCCTTCCCGCCGTCATGAAGGCGCCGATCCGTCCAGATGTAGTCACCTATGTCCACTCCAACATCTCCAAAAACGCTCGGCAACCGTATGCAGTGTCGAGGAAAGCTGGTCATCAGACCTCTGCTGAGTCATGGGGTACCGGACGTGCTGTGTCACGTATCCCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGACAGGGAGCTTTCGGTAACATGTGTCGTGGTGGACGGATGTTCGCTCCGACTCAGACCTGGCGCCGATGGCATAGGAAGATCCCTGTTAACCAGAAAAGGTATGCTGTTGCTTCAGCTATTGCTGCATCTTCCGTTCCTTCATTGGTTCTCGCTCGTGGTCACCGTATTGAATCGGTCCCTGAGTTACCTCTCGTTGTTTCTGATTCAATTGAGGGTATTGAGAAGACTAGCGTTGCTATCAAAGCTTTGAAGCAAATTGGTGCTTACCCAGATGCTGAGAAAGCTAAGGATAGCCATGCTATTCGTCCTGGAAAGGGTAAAATGCGTAACCGTAGGTACATTTCTCGTAAAGGTCCATTGATTGTGTATGGAACTGAAGGAGCTAAGCTTGTGAAGGCATTCAGGAACATTCCTGGTGTTGAAATCTGCCATGTTGATCGTTTGAATCTGCTCAAGCTTGCTCCAGGTGGTCACCTTGGTAGGTTTATTATCTGGACCAAATGTGCTTACGAGAAATTAGATGCCATTTATGGTACATTCGATAAGCCATCACTGGAGAAGAAGGGATATTTGTTGCCAAGGCCAAAGATGGTTAATGCTGATCTTGCCAGGATTATCAATTCTGATGAGGTGCAGTCTGTTGTTAGACCAATCAAGAAGGATGTTAACAAGAGGGCAACTTTGAAGAAGAATCCATTGAAGAACTTGAACGTTTTGCTGAAGCTCAATCCTTATGCAAAGACTGCCAGGAGGATGTCCCTTTTGGCCGAGGCACAGCGTGTCAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGACATCAAATTACAAAG : GAGGAGGCATCAGCTATCAAGGGTGCAAGTCATTCATGGTACAAGACTATGATCTCAGATTCCGATTATGCAGAGTTCGACAACTTCACAAAGTGGCTCGGAGTTTCTCAGTAAAGGAACTTTTCTTTTGTGAACTCATGTTAGAAAGTTTTTTGTTTAGTCTGCTGTTTTGTTCCCAAGACATGAAAGATACTGAGTGGGAGGAAAACTACGGCCTCGTTGCCTGGCTTTTCCTTGCCTACATTTTGAGATTTCATTTTAGCGTCGAGTATTACTTCATATGGTATGGTATTAAGGATTTTGATGGAATAGTTTGTTTTTGATG</gDNA_template>
            <first_frame> N  F  L  F  K  V  S  I  L  P  K  N  P  S  S  P  P  P  P  T  P  A  M  A  T  A  A  A  I  P  T  T  T  V  Q  S  L  E  N  D  M  A  T  D  S  A  A  V  P  L  P  A  V  M  K  A  P  I  R  P  D  V  V  T  Y  V  H  S  N  I  S  K  N  A  R  Q  P  Y  A  V  S  R  K  A  G  H  Q  T  S  A  E  S  W  G  T  G  R  A  V  S  R  I  P  R  V  P  G  G  G  T  H  R  A  G  Q  G  A  F  G  N  M  C  R  G  G  R  M  F  A  P  T  Q  T  W  R  R  W  H  R  K  I  P  V  N  Q  K  R  Y  A  V  A  S  A  I  A  A  S  S  V  P  S  L  V  L  A  R  G  H  R  I  E  S  V  P  E  L  P  L  V  V  S  D  S  I  E  G  I  E  K  T  S  V  A  I  K  A  L  K  Q  I  G  A  Y  P  D  A  E  K  A  K  D  S  H  A  I  R  P  G  K  G  K  M  R  N  R  R  Y  I  S  R  K  G  P  L  I  V  Y  G  T  E  G  A  K  L  V  K  A  F  R  N  I  P  G  V  E  I  C  H  V  D  R  L  N  L  L  K  L  A  P  G  G  H  L  G  R  F  I  I  W  T  K  C  A  Y  E  K  L  D  A  I  Y  G  T  F  D  K  P  S  L  E  K  K  G  Y  L  L  P  R  P  K  M  V  N  A  D  L  A  R  I  I  N  S  D  E  V  Q  S  V  V  R  P  I  K  K  D  V  N  K  R  A  T  L  K  K  N  P  L  K  N  L  N  V  L  L  K  L  N  P  Y  A  K  T  A  R  R  M  S  L  L  A  E  A  Q  R  V  K  A  K  K  E  K  L  D  K  K  R  H  Q  I  T  K  :  E  E  A  S  A  I  K  G  A  S  H  S  W  Y  K  T  M  I  S  D  S  D  Y  A  E  F  D  N  F  T  K  W  L  G  V  S  Q  *  R  N  F  S  F  V  N  S  C  *  K  V  F  C  L  V  C  C  F  V  P  K  T  *  K  I  L  S  G  R  K  T  T  A  S  L  P  G  F  S  L  P  T  F  *  D  F  I  L  A  S  S  I  T  S  Y  G  M  V  L  R  I  L  M  E  *  F  V  F  D  </first_frame>
            <second_frame>  I  F  S  L  R  F  Q  F  Y  R  K  T  L  A  A  P  P  P  L  P  L  Q  W  P  P  L  P  P  S  Q  P  P  P  C  K  A  W  K  M  I  W  P  L  T  A  P  P  F  P  F  P  P  S  *  R  R  R  S  V  Q  M  *  S  P  M  S  T  P  T  S  P  K  T  L  G  N  R  M  Q  C  R  G  K  L  V  I  R  P  L  L  S  H  G  V  P  D  V  L  C  H  V  S  L  V  F  L  V  V  V  L  T  V  L  D  R  E  L  S  V  T  C  V  V  V  D  G  C  S  L  R  L  R  P  G  A  D  G  I  G  R  S  L  L  T  R  K  G  M  L  L  L  Q  L  L  L  H  L  P  F  L  H  W  F  S  L  V  V  T  V  L  N  R  S  L  S  Y  L  S  L  F  L  I  Q  L  R  V  L  R  R  L  A  L  L  S  K  L  *  S  K  L  V  L  T  Q  M  L  R  K  L  R  I  A  M  L  F  V  L  E  R  V  K  C  V  T  V  G  T  F  L  V  K  V  H  *  L  C  M  E  L  K  E  L  S  L  *  R  H  S  G  T  F  L  V  L  K  S  A  M  L  I  V  *  I  C  S  S  L  L  Q  V  V  T  L  V  G  L  L  S  G  P  N  V  L  T  R  N  *  M  P  F  M  V  H  S  I  S  H  H  W  R  R  R  D  I  C  C  Q  G  Q  R  W  L  M  L  I  L  P  G  L  S  I  L  M  R  C  S  L  L  L  D  Q  S  R  R  M  L  T  R  G  Q  L  *  R  R  I  H  *  R  T  *  T  F  C  *  S  S  I  L  M  Q  R  L  P  G  G  C  P  F  W  P  R  H  S  V  S  R  P  R  R  R  S  S  T  R  R  D  I  K  L  Q  R :   R  R  H  Q  L  S  R  V  Q  V  I  H  G  T  R  L  *  S  Q  I  P  I  M  Q  S  S  T  T  S  Q  S  G  S  E  F  L  S  K  G  T  F  L  L  *  T  H  V  R  K  F  F  V  *  S  A  V  L  F  P  R  H  E  R  Y  *  V  G  G  K  L  R  P  R  C  L  A  F  P  C  L  H  F  E  I  S  F  *  R  R  V  L  L  H  M  V  W  Y  *  G  F  *  W  N  S  L  F  L  M </second_frame>
            <third_frame>   F  S  L  *  G  F  N  S  T  E  K  P  *  Q  P  P  P  P  Y  P  C  N  G  H  R  C  R  H  P  N  H  H  R  A  K  P  G  K  *  Y  G  H  *  Q  R  R  R  S  P  S  R  R  H  E  G  A  D  P  S  R  C  S  H  L  C  P  L  Q  H  L  Q  K  R  S  A  T  V  C  S  V  E  E  S  W  S  S  D  L  C  *  V  M  G  Y  R  T  C  C  V  T  Y  P  S  C  S  W  W  W  Y  S  P  C  W  T  G  S  F  R  *  H  V  S  W  W  T  D  V  R  S  D  S  D  L  A  P  M  A  *  E  D  P  C  *  P  E  K  V  C  C  C  F  S  Y  C  C  I  F  R  S  F  I  G  S  R  S  W  S  P  Y  *  I  G  P  *  V  T  S  R  C  F  *  F  N  *  G  Y  *  E  D  *  R  C  Y  Q  S  F  E  A  N  W  C  L  P  R  C  *  E  S  *  G  *  P  C  Y  S  S  W  K  G  *  N  A  *  P  *  V  H  F  S  *  R  S  I  D  C  V  W  N  *  R  S  *  A  C  E  G  I  Q  E  H  S  W  C  *  N  L  P  C  *  S  F  E  S  A  Q  A  C  S  R  W  S  P  W  *  V  Y  Y  L  D  Q  M  C  L  R  E  I  R  C  H  L  W  Y  I  R  *  A  I  T  G  E  E  G  I  F  V  A  K  A  K  D  G  *  C  *  S  C  Q  D  Y  Q  F  *  *  G  A  V  C  C  *  T  N  Q  E  G  C  *  Q  E  G  N  F  E  E  E  S  I  E  E  L  E  R  F  A  E  A  Q  S  L  C  K  D  C  Q  E  D  V  P  F  G  R  G  T  A  C  Q  G  Q  E  G  E  A  R  Q  E  E  T  S  N  Y  K   : G  G  G  I  S  Y  Q  G  C  K  S  F  M  V  Q  D  Y  D  L  R  F  R  L  C  R  V  R  Q  L  H  K  V  A  R  S  F  S  V  K  E  L  F  F  C  E  L  M  L  E  S  F  L  F  S  L  L  F  C  S  Q  D  M  K  D  T  E  W  E  E  N  Y  G  L  V  A  W  L  F  L  A  Y  I  L  R  F  H  F  S  V  E  Y  Y  F  I  W  Y  G  I  K  D  F  D  G  I  V  C  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101009" stop="102181"/>
                    <exon start="103202" stop="103315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLFKVSILPKNPSSPPPPTPAMATAAAIPTTTVQSLENDMATDSAAVPLPAVMKAPIRPDVVTYVHSNISKNARQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQTWRRWHRKIPVNQKRYAVASAIAASSVPSLVLARGHRIESVPELPLVVSDSIEGIEKTSVAIKALKQIGAYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEICHVDRLNLLKLAPGGHLGRFIIWTKCAYEKLDAIYGTFDKPSLEKKGYLLPRPKMVNADLARIINSDEVQSVVRPIKKDVNKRATLKKNPLKNLNVLLKLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRHQITKEEASAIKGASHSWYKTMISDSDYAEFDNFTKWLGVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="117794" PGL_stop="121647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117794" e_stop="117964"/>
            <exon e_start="119308" e_stop="119482"/>
            <exon e_start="119570" e_stop="119635"/>
            <exon e_start="120320" e_stop="120368"/>
            <exon e_start="120457" e_stop="120539"/>
            <exon e_start="120657" e_stop="120736"/>
            <exon e_start="120861" e_stop="120963"/>
            <exon e_start="121142" e_stop="121200"/>
            <exon e_start="121399" e_stop="121647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.965"/>
          <exon-intron don_prob="0.985" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="117794" e_stop="117964" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="117965" i_stop="119307" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119308" e_stop="119482" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.889">
            <gDNA_intron_boundary i_start="119483" i_stop="119569" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119570" e_stop="119635" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119636" i_stop="120319" i_length="684"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120320" e_stop="120368" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.954">
            <gDNA_intron_boundary i_start="120369" i_stop="120456" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120457" e_stop="120539" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120540" i_stop="120656" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120657" e_stop="120736" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="120737" i_stop="120860" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="120861" e_stop="120963" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="120964" i_stop="121141" i_length="178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="121142" e_stop="121200" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="121201" i_stop="121398" i_length="198"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="121399" e_stop="121647" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117794" stop="117964"/>
              <exon start="119308" stop="119482"/>
              <exon start="119570" stop="119635"/>
              <exon start="120320" stop="120368"/>
              <exon start="120457" stop="120539"/>
              <exon start="120657" stop="120736"/>
              <exon start="120861" stop="120963"/>
              <exon start="121142" stop="121200"/>
              <exon start="121399" stop="121647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTGAATTTTTTTTGTAGATTTGGAAATCGACGTTTGATCGGAGAAGAAATGGTGAAGTGTTATCCGACGGTGAGCGAAGAGTATCAAAAAGCAGTTGAAAAATGTAAGAGGAAGCTCAGAGGACTTATCGCCGAGAAGAATTGTGCTCCGATTATGCTGAGATTAGC : ATGGCATTCAGCAGGGACATATGATGTCAAAACCAAAACTGGTGGTCCATTTGGAACAATCAGGCACCCGAATGAACTTAAACATGGAGCTAACAATGGTCTTGATATTGCTGTTCGACTTTTGGAGCCGATCAAGGAACAGTTCCCAATCCTATCCTACGCTGACTTTTATCAG : TTGGCTGGAGTAGTTGCTGTTGAAGTTACGGGAGGCCCCGATATTCCTTTTCATCCTGGGAGACAG : GACAAGACAGAACCACCTCCAGAAGGCCGCTTGCCTGACGCCACCAAAG : GCTCAGATCATCTGAGGGAGGTTTTTGGACACATGGGATTGAGTGATAAAGACATTGTTGCTTTATCTGGTGGTCACACTCTG : GGAAGGTGCCACAAAGAACGCTCAGGATTTGAGGGAGCATGGACCAACAACCCTCTCATATTTGACAATTCCTATTTCAA : GGAGCTTTTGAGTGGAGAGAAAGAAGGTCTCCTCCAGCTACCATCAGACAAAGCACTCTTAGAAGATCCAGTCTTCCGCCCTCTAGTCGAGAAATATGCTGCA : GATGAAGATGCATTCTTTGCTGATTATGCTGAAGCTCATTTGAAGCTCTCGGAGCTCGG : ATTTGCAGATGCTGAGTAAGGTGTGGTGAGAAAGTTGTTTCAATAATCTCTGGAGATCAGTCTGGTTCTTCCAATTTTTCATTTGTACTATTTGTGTATTTAAAACTTTAAAAGTCTAAAAACCAGCTTTACATATATTATATGATTGAAGAATATTGTATGGCTATTACATAAGTCTTGTAATAATGCAACTTTTGTGTCTTTATGTTTGTTGCTAGTATATACAATATATTAAGTAATGGTAAAATA</gDNA_template>
            <first_frame> I  F  E  F  F  L  *  I  W  K  S  T  F  D  R  R  R  N  G  E  V  L  S  D  G  E  R  R  V  S  K  S  S  *  K  M  *  E  E  A  Q  R  T  Y  R  R  E  E  L  C  S  D  Y  A  E  I  S  :  M  A  F  S  R  D  I  *  C  Q  N  Q  N  W  W  S  I  W  N  N  Q  A  P  E  *  T  *  T  W  S  *  Q  W  S  *  Y  C  C  S  T  F  G  A  D  Q  G  T  V  P  N  P  I  L  R  *  L  L  S   : V  G  W  S  S  C  C  *  S  Y  G  R  P  R  Y  S  F  S  S  W  E  T   : G  Q  D  R  T  T  S  R  R  P  L  A  *  R  H  Q  R :   L  R  S  S  E  G  G  F  W  T  H  G  I  E  *  *  R  H  C  C  F  I  W  W  S  H  S   : G  K  V  P  Q  R  T  L  R  I  *  G  S  M  D  Q  Q  P  S  H  I  *  Q  F  L  F  Q  :  G  A  F  E  W  R  E  R  R  S  P  P  A  T  I  R  Q  S  T  L  R  R  S  S  L  P  P  S  S  R  E  I  C  C   : R  *  R  C  I  L  C  *  L  C  *  S  S  F  E  A  L  G  A  R  :  I  C  R  C  *  V  R  C  G  E  K  V  V  S  I  I  S  G  D  Q  S  G  S  S  N  F  S  F  V  L  F  V  Y  L  K  L  *  K  S  K  N  Q  L  Y  I  Y  Y  M  I  E  E  Y  C  M  A  I  T  *  V  L  *  *  C  N  F  C  V  F  M  F  V  A  S  I  Y  N  I  L  S  N  G  K  I </first_frame>
            <second_frame>  F  L  N  F  F  C  R  F  G  N  R  R  L  I  G  E  E  M  V  K  C  Y  P  T  V  S  E  E  Y  Q  K  A  V  E  K  C  K  R  K  L  R  G  L  I  A  E  K  N  C  A  P  I  M  L  R  L  A :   W  H  S  A  G  T  Y  D  V  K  T  K  T  G  G  P  F  G  T  I  R  H  P  N  E  L  K  H  G  A  N  N  G  L  D  I  A  V  R  L  L  E  P  I  K  E  Q  F  P  I  L  S  Y  A  D  F  Y  Q  :  L  A  G  V  V  A  V  E  V  T  G  G  P  D  I  P  F  H  P  G  R  Q  :  D  K  T  E  P  P  P  E  G  R  L  P  D  A  T  K   : G  S  D  H  L  R  E  V  F  G  H  M  G  L  S  D  K  D  I  V  A  L  S  G  G  H  T  L  :  G  R  C  H  K  E  R  S  G  F  E  G  A  W  T  N  N  P  L  I  F  D  N  S  Y  F  K :   E  L  L  S  G  E  K  E  G  L  L  Q  L  P  S  D  K  A  L  L  E  D  P  V  F  R  P  L  V  E  K  Y  A  A  :  D  E  D  A  F  F  A  D  Y  A  E  A  H  L  K  L  S  E  L  G :   F  A  D  A  E  *  G  V  V  R  K  L  F  Q  *  S  L  E  I  S  L  V  L  P  I  F  H  L  Y  Y  L  C  I  *  N  F  K  S  L  K  T  S  F  T  Y  I  I  *  L  K  N  I  V  W  L  L  H  K  S  C  N  N  A  T  F  V  S  L  C  L  L  L  V  Y  T  I  Y  *  V  M  V  K   </second_frame>
            <third_frame>   F  *  I  F  F  V  D  L  E  I  D  V  *  S  E  K  K  W  *  S  V  I  R  R  *  A  K  S  I  K  K  Q  L  K  N  V  R  G  S  S  E  D  L  S  P  R  R  I  V  L  R  L  C  *  D  *   : H  G  I  Q  Q  G  H  M  M  S  K  P  K  L  V  V  H  L  E  Q  S  G  T  R  M  N  L  N  M  E  L  T  M  V  L  I  L  L  F  D  F  W  S  R  S  R  N  S  S  Q  S  Y  P  T  L  T  F  I  S :   W  L  E  *  L  L  L  K  L  R  E  A  P  I  F  L  F  I  L  G  D  R :   T  R  Q  N  H  L  Q  K  A  A  C  L  T  P  P  K  :  A  Q  I  I  *  G  R  F  L  D  T  W  D  *  V  I  K  T  L  L  L  Y  L  V  V  T  L  W :   E  G  A  T  K  N  A  Q  D  L  R  E  H  G  P  T  T  L  S  Y  L  T  I  P  I  S   : R  S  F  *  V  E  R  K  K  V  S  S  S  Y  H  Q  T  K  H  S  *  K  I  Q  S  S  A  L  *  S  R  N  M  L  Q :   M  K  M  H  S  L  L  I  M  L  K  L  I  *  S  S  R  S  S   : D  L  Q  M  L  S  K  V  W  *  E  S  C  F  N  N  L  W  R  S  V  W  F  F  Q  F  F  I  C  T  I  C  V  F  K  T  L  K  V  *  K  P  A  L  H  I  L  Y  D  *  R  I  L  Y  G  Y  Y  I  S  L  V  I  M  Q  L  L  C  L  Y  V  C  C  *  Y  I  Q  Y  I  K  *  W  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117795" stop="117964"/>
                    <exon start="119308" stop="119482"/>
                    <exon start="119570" stop="119635"/>
                    <exon start="120320" stop="120368"/>
                    <exon start="120457" stop="120539"/>
                    <exon start="120657" stop="120736"/>
                    <exon start="120861" stop="120963"/>
                    <exon start="121142" stop="121200"/>
                    <exon start="121399" stop="121417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNFFCRFGNRRLIGEEMVKCYPTVSEEYQKAVEKCKRKLRGLIAEKNCAPIMLRLAWHSAGTYDVKTKTGGPFGTIRHPNELKHGANNGLDIAVRLLEPIKEQFPILSYADFYQLAGVVAVEVTGGPDIPFHPGRQDKTEPPPEGRLPDATKGSDHLREVFGHMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFADAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="127852" PGL_stop="128434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127852" e_stop="128434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="127852" e_stop="128434" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127852" stop="128434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATGACCCATTTGATAGAATATGGGCGTCTGACACCCTAAAAAAAGCCAATTACCTTGTTGATGTGGCTGCTGGTACTGAAAGAGTTTCAACCAAAATGCCAATTGATGTGAATACCTTAAATGGTGAGATGCCTCCTCAGAAAGCAATGCAGACTGCTGTAGTAGGAAGAAATGGCTCGTTAACTTATCGTCTGAATCTCGATGGTTTCCCTGGTTTTGGTTGGGCATTTACTTATTTTGCTGAAATTGAGGATTTGAAACCTGGTGATAGTAGGAAATTCCGGTTGCTTCTCCCTGGAGCTCCTGATATCAGCAAGGTTGCTGTTAATATCCAAGAGAATGCCCATGGGAAATATCGTTTATATGAGCCCGGCTACTTCAACTTGTCCTTGCCCTTTGTATTATCTTTTCGTTTCGGAAAGACATCTGATTCCACCATGGGGCCTCTCTTGAATGCTATGGAAGTAAACAGATATGTAAAGAGAACTGATGGCTCTTTAGACGGTAAAACCATGTCTTTTTCTTTGAACATTATTATAATGTGGTTCGTTGAAATGATTATCTGCAGTTTATTTCATTA</gDNA_template>
            <first_frame> L  M  T  H  L  I  E  Y  G  R  L  T  P  *  K  K  P  I  T  L  L  M  W  L  L  V  L  K  E  F  Q  P  K  C  Q  L  M  *  I  P  *  M  V  R  C  L  L  R  K  Q  C  R  L  L  *  *  E  E  M  A  R  *  L  I  V  *  I  S  M  V  S  L  V  L  V  G  H  L  L  I  L  L  K  L  R  I  *  N  L  V  I  V  G  N  S  G  C  F  S  L  E  L  L  I  S  A  R  L  L  L  I  S  K  R  M  P  M  G  N  I  V  Y  M  S  P  A  T  S  T  C  P  C  P  L  Y  Y  L  F  V  S  E  R  H  L  I  P  P  W  G  L  S  *  M  L  W  K  *  T  D  M  *  R  E  L  M  A  L  *  T  V  K  P  C  L  F  L  *  T  L  L  *  C  G  S  L  K  *  L  S  A  V  Y  F  I  </first_frame>
            <second_frame>  *  *  P  I  *  *  N  M  G  V  *  H  P  K  K  S  Q  L  P  C  *  C  G  C  W  Y  *  K  S  F  N  Q  N  A  N  *  C  E  Y  L  K  W  *  D  A  S  S  E  S  N  A  D  C  C  S  R  K  K  W  L  V  N  L  S  S  E  S  R  W  F  P  W  F  W  L  G  I  Y  L  F  C  *  N  *  G  F  E  T  W  *  *  *  E  I  P  V  A  S  P  W  S  S  *  Y  Q  Q  G  C  C  *  Y  P  R  E  C  P  W  E  I  S  F  I  *  A  R  L  L  Q  L  V  L  A  L  C  I  I  F  S  F  R  K  D  I  *  F  H  H  G  A  S  L  E  C  Y  G  S  K  Q  I  C  K  E  N  *  W  L  F  R  R  *  N  H  V  F  F  F  E  H  Y  Y  N  V  V  R  *  N  D  Y  L  Q  F  I  S  L </second_frame>
            <third_frame>   D  D  P  F  D  R  I  W  A  S  D  T  L  K  K  A  N  Y  L  V  D  V  A  A  G  T  E  R  V  S  T  K  M  P  I  D  V  N  T  L  N  G  E  M  P  P  Q  K  A  M  Q  T  A  V  V  G  R  N  G  S  L  T  Y  R  L  N  L  D  G  F  P  G  F  G  W  A  F  T  Y  F  A  E  I  E  D  L  K  P  G  D  S  R  K  F  R  L  L  L  P  G  A  P  D  I  S  K  V  A  V  N  I  Q  E  N  A  H  G  K  Y  R  L  Y  E  P  G  Y  F  N  L  S  L  P  F  V  L  S  F  R  F  G  K  T  S  D  S  T  M  G  P  L  L  N  A  M  E  V  N  R  Y  V  K  R  T  D  G  S  L  D  G  K  T  M  S  F  S  L  N  I  I  I  M  W  F  V  E  M  I  I  C  S  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0179M08.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127854" stop="128432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDPFDRIWASDTLKKANYLVDVAAGTERVSTKMPIDVNTLNGEMPPQKAMQTAVVGRNGSLTYRLNLDGFPGFGWAFTYFAEIEDLKPGDSRKFRLLLPGAPDISKVAVNIQENAHGKYRLYEPGYFNLSLPFVLSFRFGKTSDSTMGPLLNAMEVNRYVKRTDGSLDGKTMSFSLNIIIMWFVEMIICSLFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 39288 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2067 bytes was the average size of a spliced alignment
$ 24984 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1561 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 35 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:07:07
-->
