<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:49:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486290" ref_strand="+" ref_description="SGN-E486290 [cSTE-21-P17]">
      <seq>agttttcatcacttccatcgcgcctccaagaaaaaaaaatggatgcttctctttgttaagctaattcgcagctttgtggacgtctacttcacttgggcactacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagcaagaagaaaaaccctcttgtattcttagatgtatcaattgatggagatactgcagaaaaaattgttattgagctctttgcagatactgtcccaaggactgcataaaatttcccgtcgctctgcacaggtgagaagggagatggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaagtggtgatttctccaaagggaatggcactggtggagagagtatatatggagggaaatttccacatgaaaacttaaaagttgcccacactgaagctggtcttctctcgatggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34365" stop="39969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34665" g_stop="34786" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="222" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="277" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="366" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="391" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="430" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39777" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="477" r_length="47" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E486290" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34665" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATCACTTCCATCGCGCCTCCAAGAATAAAAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATG</genome_strand>
        <mrna_strand>AGTTTTCATCACTTCCATCGCGCCTCCAAGAAAAAAAAATGGATGCTTCTCTTTGTTAAGCTAATTCGCAGCTTTGTGGA-CGTCTACTTCAC-TTGGGCACTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGCAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAATTGATGGAGATACTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTCCCAAGGACTGCATAAAATTTCCCGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGATGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAC................................................................................ATGAAAACTTAAAAGTTGCCCACACTGAAGCTGGTCTTCTCTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622868" ref_strand="+" ref_description="SGN-E622868 [73240]">
      <seq>ttccatcgcgcctccaagaaaaaaaaaatggaggcttctctttgttaagcttattcgcagctttgtggacgtctacttcacttgggcactacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctcttgtattcttagatgtatcaattgatggagatactgcagaaaaaattgttattgagctctttgcagatactgtcccaaggactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggcactggtggagagagtatatatggagggaaatttccagatgaaaacttcaaagttgcccacactgaagctggtcttctctcgatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttggtcggggaaacgttgtaacagggaatggatttagtgaacgaaaattgaacagctggggaacagacagtgggaagccatcttgggcttgtgaaaattgtggcattgtggcgaaatgtctgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34377" stop="40458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34677" g_stop="34786" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="211" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="266" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="380" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="419" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39848" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="537" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40029" g_stop="40158" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="672" r_length="135" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E622868" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34677" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39848"/>
          <exon e_start="40029" e_stop="40158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCGCGCCTCCAAG-AATAAAAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAA-AGGGAATGGATTTAGTGAA-GAAAATTGAACAGCT-GGGAACAGACAGTGGGAAGCCATC-TGGGCTTGTGAAAATTGTGG-ATTGTGGCGAACTGTCTGAGAAG</genome_strand>
        <mrna_strand>TTCCATCGCGCCTCCAAGAAAAAAAAAATGGAGGCTTCTCTTTGTTAAGCTTATTCGCAGCTTTGTGG-ACGTCTACTTCAC-TTGGGCACTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAATTGATGGAGATACTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTCCCAAGGACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAAAACTTCAAAGTTGCCCACACTGAAGCTGGTCTTCTCTCGATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGGTCGGGGAAACGTTGTAACAGGGAATGGATTTAGTGAACGAAAATTGAACAGCTGGGGAACAGACAGTGGGAAGCCATCTTGGGCTTGTGAAAATTGTGGCATTGTGGCGAAATGTCTGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446419" ref_strand="+" ref_description="SGN-E446419 [cSTA-21-G14]">
      <seq>ttccatcgcgcctccaagaaaaaaaaaatggaggcttctctttgttaagcttattcgcagctttgtggacgtctacttcacttgggcactacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctcttgtattcttagatgtatcaattgatggagatactgcagaaaaaattgttattgagctctttgcagatactgtcccaaggactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggcactggtggagagagtatatatggagggaaatttccagatgaaaacttcaaagttgcccacactgaagctggtcttctctcgatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttgtttttgggaaagttgtaaagggaatggatttagtgaagaaaattgaacagctgggaacagacagtgggaagccatctgggcttgtgaaaattgtggattgtggcgaaatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34377" stop="40453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34677" g_stop="34786" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="211" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="266" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="380" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="419" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39848" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="537" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40029" g_stop="40153" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="662" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E446419" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34677" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39848"/>
          <exon e_start="40029" e_stop="40153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCGCGCCTCCAAG-AATAAAAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTG</genome_strand>
        <mrna_strand>TTCCATCGCGCCTCCAAGAAAAAAAAAATGGAGGCTTCTCTTTGTTAAGCTTATTCGCAGCTTTGTGG-ACGTCTACTTCAC-TTGGGCACTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAATTGATGGAGATACTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTCCCAAGGACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAAAACTTCAAAGTTGCCCACACTGAAGCTGGTCTTCTCTCGATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGTTTTTGGGAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAAATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698642" ref_strand="+" ref_description="SGN-E698642 [FA07AE11]">
      <seq>ccaccattaataaaaaatggaggccttcctctttgtaagctaatctccagttttgtggaacgtcttcgtcactttgggctctacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctcttgtattcttagatgtatcacttgatggagatgctgcacaaaaaattgttattgagctctttgcagatactgttccaagaactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggcactggtggagagagtatatatggagggaaatttccagatgagaacttcaaagttgcccacgcggaggctggtcttctctcaatggcaaatagtggacctaatacaaatggatcccagttcttcattatatttaagagaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34387" stop="40135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34687" g_stop="34786" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="203" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="258" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="347" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="372" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39835" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E698642" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34687" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAAGAATAAAAAATGGAGG-CTT-CTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTC</genome_strand>
        <mrna_strand>CCACCATTAATAAAAAATGGAGGCCTTCCTCTTTG-TAAGCTAATCTCCAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCACTTGATGGAGATGCTGCACAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGACCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447490" ref_strand="+" ref_description="SGN-E447490 [cSTA-26-B14]">
      <seq>aaaatggaggcttctctttgttaagctaattcgcagctttgtggacgtctacttcacttgggcactacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagcaagaagaaaaaccctcttgtattcttagatgtatcaattgatggagatactgcagaaaaaattgttattgagctctttgcagatactgtcccaaggactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggcactggtggagagagtatatatggagggaaatttccagatgaaaacttcaaagttgcccacactgaagctggtcttctctcgatggcaaatagtggtcctaatacaaatggatcccagttcttcattatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34400" stop="40126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34700" g_stop="34786" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="187" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="242" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="331" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="356" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="395" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39826" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="491" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E447490" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34700" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTA</genome_strand>
        <mrna_strand>AAAATGGAGGCTTCTCTTTGTTAAGCTAATTCGCAGCTTTGTGG-ACGTCTACTTCAC-TTGGGCACTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGCAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAATTGATGGAGATACTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTCCCAAGGACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAAAACTTCAAAGTTGCCCACACTGAAGCTGGTCTTCTCTCGATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367725" ref_strand="+" ref_description="SGN-E367725 [cLPT-14-K9]">
      <seq>aaaatggaggcttctctttgttaagctaattcgcagttttgaggacgtcttcgtcactttgggcactatccaaatcgctgatggtgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctctggtattcttagatgtatcagttgatggagatgctgcagaaaaaattgttattgagctctttgcagatactgttccaagaactgcagaaaatttccggtcgctctgcacaggcgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgcgtaataaaagggtttatggcacaaggtggcgatttctccaaagggaatggcactggtggagagagtatatatggagggaaattttcagatgagaacttcatagttgcccacacggaggctggtcttctctgaatggcgaatagtggtcctaatacaaatggatcccagatcttcattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34400" stop="40123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34700" g_stop="34786" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.86"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="243" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="332" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39505" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="357" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39612" g_stop="39650" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="396" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39731" g_stop="39823" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="489" r_length="93" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E367725" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34700" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39505"/>
          <exon e_start="39612" e_stop="39650"/>
          <exon e_start="39731" e_stop="39823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATAT</genome_strand>
        <mrna_strand>AAAATGGAGGCTTCTCTTTGTTAAGCTAATTCGCAGTTTTGAGG-ACGTCTTCGTCACTTTGGGCACTATCCAAATCGCTGATGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTGGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGCGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGATTTCTCCAAAGGGAATG..........................................................................................................GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTTCAG................................................................................ATGAGAACTTCATAGTTGCCCACACGGAGGCTGGTCTTCTCTGAATGGCGAATAGTGGTCCTAATACAAATGGATCCCAGATCTTCATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687859" ref_strand="+" ref_description="SGN-E687859 [T3_tus_81_F19]">
      <seq>cttctctttgcccatctaattcacagttttgtggaacgtcttcgtcactttgcgctctacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctcttgtattcttagatgtatcagttgatggagatgctgcagaaaaaattgttattgagctctttgcagatactgttccaagaactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggtatgtttttctccttctgggccctgaactgacaattggtgcagaggatctttaacttcaacttcttggccagacaagtaaagcacgaacttttaatgtattgcaggcactggtggagagagtatatatggagggaaatttccagatgagaacttcaaagttgcccacgcggaggctggtcttctctcaatggcaaatagtggtcctaataacaaatggatcccagttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34423" stop="40115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34710" g_stop="34786" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="179" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="234" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="323" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39650" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="493" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39731" g_stop="39815" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="579" r_length="86" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E687859" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34710" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39650"/>
          <exon e_start="39731" e_stop="39815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAAT-ACAAATGGATCCCAGTTCTT</genome_strand>
        <mrna_strand>CTTCTCTTTGCCCATCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGCGCTCTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATAACAAATGGATCCCAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327344" ref_strand="+" ref_description="SGN-E327344 [cTOC-19-L22]">
      <seq>ttctctttgttaagctaattcacagttttgtggaacgtcttcgtcactttgggctctacccaaattgctgttgttgcatcattacggcctgaggtacaggatgagtaagaagaaaaaccctcttgtattcttagatgtatcagttgatggagatgctgcagaaaaaattgttattgagctctttgcagatactgttccaagaactgcagaaaatttccggtcgctctgcacaggtgagaagggagttggagtatctactggaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggtatgtttttctccttctgggccctgaactgacaattggtgcagaggatctttaacttcaacttcttggccagacaagtaaagcacgaacttttaatgtattgcaggcactggtggagagagtatatatggagggaaatttccagatgagaacttcaaagttgcccacgcggaggctggtcttctctcaatggcaaatagtggtcctaatacaaatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="34411" stop="40106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34711" g_stop="34786" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37012" g_stop="37113" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="178" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37259" g_stop="37313" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="233" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38826" g_stop="38914" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="322" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39481" g_stop="39650" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="492" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39731" g_stop="39806" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="568" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E327344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34711" e_stop="34786"/>
          <exon e_start="37012" e_stop="37113"/>
          <exon e_start="37259" e_stop="37313"/>
          <exon e_start="38826" e_stop="38914"/>
          <exon e_start="39481" e_stop="39650"/>
          <exon e_start="39731" e_stop="39806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTGGTAATTAACACTCTTTTAAGTTGTTGATTTCTTCTTCTGCTTGTTGCTATTGTTTTTTTTTATCTGCAATTGTTAGTCTGATATGAAATCTTGGTTTTATGTTCACACCCATCTGCAAATTTATGTTTTTTACAGTGAAAAAATGTGAAGCATGCTGATGTGAGTTATAGCTCCTGTGAACTATTACTAGGGTTTAAGAGTTTGCCCTTTTTTTCCAGAAGAATCTTTCTTAATTTCTCTTACAGCATATGCATTTTACAATGTTCTTGTTGATCTGGGAATTTAGCAGCTTCGAACTGGGATTTAGGAGTTTGCCCTTTTCTCCCTAAGCAAAAAGTTGATTTTTTTTTAATTAATTTTTTGTTCAGTGTTCTGTGTATGATAGTATCCAGATTGGTTTGGTTTGCAGTGATTAAGTATTAGGGTGTATTCGGTACGAAGGAAAATGTTTTGAGTTTTGGGCTAGGATTATCCCTTACCTATGGGAGTAGGTTCATTTTAAAAGTCTTTCGAATATAATTTGAACATGTTTAATCCTTTAAGTCTTAACTTAAGTTAATCAATTTTGGTCTCTCTAACATAACGACGTTAAAAACTAACGGTACAAACAATTTTTCTAACGGTATGAATTTCAATTGAGAGTGCAATGACTTTCTTGATTGATGCACATTTTATTTCTTTTTGTCTTGTTCATTTCTTAGATTTTTTTAATTTCTTTTTGTGTTTCCCATCGAATGTCCAGAGCTCACATTGGAGCCCGGACTAAATCCATATTGCACACCGTAGGCCCATTCGGGAGTGGTCTGCACCCATCCGATGTTGTTCTTCATTTTTTTGGATTGATGTAGTAGAGTTATAGATAGTTATAGTAGAGTAGTAAATATACGAAAGAGAATGAGATACGAAATCAACATATAGTGAAAAATCACATTTTTTTGTTTGATAAAAACCCAGATGGTGTTTCTTGCTAAAATCTTACCATAACTGGGTATTTCGCTATCATGAGATCTAATAGTCATTGTTGGAAAAGAGAAGATCAACTCTTCACTTGAGTTCTCTTCTTGTCACAGCTGAACAAAGCTTTTTACAGAGAGATTGGGGTTTTTTTTACTGAGGTGTTTCCTTGCGTGTGAAGTCGGGGGAAAGAAGAATATGTTAGCCCAATGGGCTTTGTAATTTACAAGTCACATAGGGTTTATTAAGAACTCTTTAAATCTTCCGAGAGCAAAAAGGGCAAACTCTTTAAATGTGTTTGCCCTTTTTTCCCGGAAAATGTGTTTGTCCGATGGGTTTATTAAACCTCCCCCCCCCCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTGTTTGGTTTTAAACTTCAATTGTAGCTGTAATTGTTTGGATGCATGGTGATATTGGACATTTGAAGGTTTAACATTATATACTACAGATAAGACAATTGTTACAATTGGTTCGTGCCTAAGCATAATTTCCATGCGTGACAGGAGTGAGCTAGTGAGGAGTCATATTAATACTTACTGTAAGCAATCAAGTGCAATAGTTTCAACAAGTAACGAAGTACTAGTGGTGTCAAATGGACAGGCTAGGTCATCATTAGGCGGTTTAAAATGGTGCCCTTGTTCAAAGTTGGCTTGAGTCAATTTGGACTGAATGGATTATAACTCAGCCCTTCCAAATCTAACATTCTTTAGTTTTTTGTCTGTTTTATAATTTCCTTAGTTACCATTTACCAAATCAACTAAGAAAAATAGCCTATTTTTTCTTTATAGAGAGGGAAAATGCTTGAAGTTGTTGATGATCTTTTTTGGTACTTAACAAACTTTCTCTATGGTTTAATTTGGGTTGTGTGTGAATTGACTGATAATTGCATTTACTCCCAACTCAGCTTGCTCAACTCTGGACGAGTTGGGCAGGATACACTTTTAGTCTGTCTTTGGCAGCTTCAAATGGTGGTAGATAGAGTCTCATTCGAAATTTGAGTAGTCGTTGACTCCTCTTAAGATGGTTGCAGAGACTTCTGCTCCAGTCTGCTGTCTATGTATGGAAAATATATCACATGTTTTTGTGTCTTTCCTGTCATCCTCTACCACCCTCTCTCCATGACACCTATGATTAAGAATTCCATATTTGCGAGGATAGTTATATTGTTTGATCTAACAATCAAAGAATTTTTATGAATCTCTTTCGTTCAGAATATTTCATAACTTGAAATGATATTTCAGCATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAGGTAATATATGAACTAAATCTTACCAACCTTCATGGATCTCTTCCTCTTTTGGATATATTTTTTTTCTTCCATATGAAACCATGTCTTGAAACTGTTATTGATATGTCCTATGTTCAAATGAGCGTTATTTTTTGGAAATGTGCAGCTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAGGTATATTTCTCGATACTTTATTTGCTTTGTGCTAAATGGGTACTTTGTTTGAGCCTTGAGGCTCCCATATCCCCTCCCCGGGAATAAGAAAAAAGTAAGGAAAAGCTTCTTCAGTTCTATCTTTGTCACATTTCTAGTCTGGATTGGAATTAAGCAAAGGTTCTAAATATGTGTTACTTAGTGGAATATAAGTCGTGCATCATTGTGAAGGGCCTTAAGGAAAATCTTCTGTAGGTCAGTGAATACCATCATTATGCTGCTCTGGAATTGTGAGACTATCCTTTGTTTTATTAAATCACGTTGCCTTGATGAAAGTCGTAACTTCCCTTCCATAATGTAGGCCTAGAAACACCATACAAAATTCTGCTCCAAAAAATTGGAGACTGTCTAGTGTTTTGTGAATTCCTGTTCTAGTCAATCAAAGTATGATTTTATGTATTCAACATTGAACTAGATTTATCCACCTTTTCACCCAAGCAAATATCCCAGAGTTTTATGCTAAATAACGATCTTTTTGACAATCATTTTGATATTATATGTGAATAATAATAGCTATAGTCCAACAATTTCTGGAATTTCAAGCGCAGGATTTGCATTTTTTTTTGGATTAAGTTATTTTATTGTCCCTTTTTTCCCTGAATAAAACTGTGCTGATTAGGAAATGTAATATTATTTGTGGTCAAAGGAATTGGAATGATTGATTTGTAACTTAGAGCGGGAAGTTTATTTCTGTTGATGCTTGTTAGAGTGTATATCATTGGTTAACTGAATGTGCTATTGTATCTGTCGAGCTGGAAGTTTATTTGTGCTGCTGCTTGTTAGAGTGTATACCATTGGTTAACGGAATGTGCTATTGTGTCTGTCTTAAATCCTCAATCATGAGCTAATGTTTGGGATTGAGTTAGGCCCAGTGTTTATTTTTTAAAAGTTTTAACATGGTATCAGTGTTACACCTATCCATATGGCTTGTTTTCTAATGGTGGATCCCGCATGTTATGTTCCATATGGCAGTTATCCAAATAGGGAAATACAAGAATGAGGTCTGGCTCTGATATTATGAGAAAATAGACCATGGGCCTAGTTCAACCTCTCTAATTGTTCGAGTCTGGGTGTGTCGGTATCTCACATTGATCAAGGGAATATGTTGTTGTCTCCTTATATGACCTTAAATTATCCTCATCTAAATGAGTTAGTTATTGGGGTTGAGTTAGATGCAGTGGTCATTTTCTTAAAACGCTACTAATTTTATTATATTTTTGATGAGGGAAAAGGTTGGTTTAAAAATTTGAATATCTTCCGTTTCATGTGTGCACCGAATCATTAAGAAATCACATATTCCTGCATAGAAATGGATCATCATTGTGAATGGGTCTTTTGATTATTATCATTGTTTTCATTTTCTACATTAGTAGATTTTTCCTTTCATTGGCTTTCAGTGCTTGCATGATTTCACGAGCATAATTGGTTGATCTTATGAGTGTTGTGATTTCAATGATATGTTGTATTTTGAAGGTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATC</genome_strand>
        <mrna_strand>TTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG.................................................................................................................................................CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367479" ref_strand="+" ref_description="SGN-E367479 [cLPT-7-I7]">
      <seq>gagtatctactgtaaaacctctgcactacaaaggatgcttatttcaccgtgtaataaaagggtttatggcacaaggtggtgatttctccaaagggaatggtatgtttttctccttctgggccctgaactgacaattggtgcagaggatctttaacttcaacttcttggccagacaagtaaggcacgaacttttaatgtattgcaggcactggtggagagagtatatatggagggaaatttccagatgagaacttcaaagttgcccacacggaggctggtcttctctcaatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttgtttttggaaaagttgtaaagggaatggatttagtgaagaaaattgaacagctgggaacagacagtgggaagccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="38541" stop="40415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38841" g_stop="38914" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39481" g_stop="39650" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="244" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39731" g_stop="39848" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="362" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40029" g_stop="40115" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="449" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E367479" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38841" e_stop="38914"/>
          <exon e_start="39481" e_stop="39650"/>
          <exon e_start="39731" e_stop="39848"/>
          <exon e_start="40029" e_stop="40115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAAGTATGTTCTCTCTCTCTTTGATATTACATTCTTTGTCCTTTGGAGAATTAAACAATGTAGGAATATGATGTATCTTTATATTAATTTTACCTAAGTTCGGGTAAGTGATATGTGATAATTCCGGAATATGGGTTTGAAGTTCACAAGTTCCTTTTTTTCCTGCATCGGCACAATTATTATCTTAAATCATGTAGCCCCCCCATCTTACTAGCCCTTCAATATCATGAGTACATTTTTTTGTGACCTTCTCTCCTAATGTATGGGATTACGAAGGGGTTGTTTTATAGATTTTACGAATCTCTTGTGAAGCAGTATAGATAGATCTATTTCTGTTGTACTTGTCATTTATTTTAAATGAGAAATTAATTGTGCGAGGATAAATATCAGCTGATTTGTTTCATGCGCTGTTAGGGCTTGGTTTGATGACTAAAATTGTCAATTAAGAATATATCCACTTTTTCCTTTCTGTTTCTTCTGCAATCTGCATAAGGCTTCTAGATTTTCCCTCTTAGTCAATATATAGGAGATTTATTGTCAGTCCCATTACCTCTTTCTGTTTTACACAGGGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAGGTAGATTAGTCTATATGTTTTTAGTGGTGAATAAGTGGTTATATGATTGTGATGCTGATTGTAATTTTTTTCTCTATTAGATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATC</genome_strand>
        <mrna_strand>GAGTATCTACTGTAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAGGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG................................................................................ATGAGAACTTCAAAGTTGCCCACACGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395700" ref_strand="-" ref_description="SGN-E395700 [TUS-17-K24](-)">
      <seq>gctggtcttctctcaatggcaaatagtggtcctaatacaaatggatcccagttcttcattatatttaagagaactccccatctcgacgggaagcatgttgtttttggaaaagttgtaaagggaatggatttagtgaagaaaattgaacagctgggaacagacagtgggaagccatctgggcttgtgaaaattgtggattgtggcgaactgtctgagaagaaaagtaatgatacacccaaagcagagaaagggaaaaataagaagtccgcgagagctctttcctctgatgatgattcagacagtcaagaaaaggggaaaagcaaatcatccaccaatagaaggaaaaagaaaaagaggagatactcttcatctgattcttacagttctgagacagatactgattcctcttcagactctgattcagattctaagctggactcctattcttctagttcttcaggtgatgaaaggcgtaagaagaggaagaggtcaactaagaaagaaaggagtcgacatgggaagaaaaaaggtagaaaaagcacgagcagaagagttgatccaaataaaagatcgagacgcaagtggagctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="39460" stop="40948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39760" g_stop="39848" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40029" g_stop="40189" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="250" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40306" g_stop="40639" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="584" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40727" g_stop="40734" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="592" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E395700" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395700" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39760" e_stop="39848"/>
          <exon e_start="40029" e_stop="40189"/>
          <exon e_start="40306" e_stop="40639"/>
          <exon e_start="40727" e_stop="40734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGGGTATTTATCTGATATATATGAGTGTACATTAGTTTCAACCATGTTTTGTCTTTCACTAAGAACCCTGACATACCTCTTGGCTTGTACTCCAAATCCTCTACTAGGAGAATAAATAACTTTGGTTATAACAGTGTGTCAATACCTAATTCCTATCGTGAAGCATCTACATTTCTGCTGCAGGAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAGGTGATTTTCTCTAAGACTAAGACTACTCTGCTGCAGTGTTACTACCTTATGTATAAGAGATTGTTGTGTGGTCTTGTTTCTGTTGTTCATTCATATATTTTTTGCCTCACCTCTAGGGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTG</genome_strand>
        <mrna_strand>GCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG....................................................................................................................................................................................GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG....................................................................................................................GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCCAAATAAAAGATCGAGACGCAAGTG.......................................................................................GAGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426196" ref_strand="+" ref_description="SGN-E426196 [STM-46-M19]">
      <seq>cagagaaagggaaaaataagaagtccgcgagagctctttcctctgatgatgattcagacagtcaagaaaaggggaaacgcaaatcatccaccaatagaaagaaaaagaaaaagaggagatactcttcatctgattcttacagttctgagacagatactgattcctcttcagactctgactcagattctaagctggactcctattcttctagttcttcaggtgatgaaaggcgtaagaagaggaagaggtcaactaagaaagaaagcagtcgacatgggaagaaaaaaggcagaaagagcacgagtagaagagttcatcgaaataaaagatcgagacgcaagcggagctctgagagttctagtgacacagacagtcagagcatgagcagcagcagtgatagctccgatgatgaaaatggcaggcccaatatttcggccaccgaaaaggtttnggtgaagaaatcatcaaaccctgtcaaagaacaagctgttttgaagcagcaacagaatcttgaagagggtgaaatatctaagaacggtaagcttccaaataatggtcatggtggagatgtacaaactgacaggactctcgccacaaatcatcaatctgataattcgagcagatccaggagcgcaacaccaagtcctaagggaaagcaagacccagccgcaggagcagtcgaagatgagcccagaaaagtactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40004" stop="41595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40181" g_stop="40189" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116">
            <donor d_prob="0.839" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40306" g_stop="40639" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="343" r_length="334" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87">
            <donor d_prob="0.933" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40727" g_stop="40835" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="448" r_length="105" r_score="0.862"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="40919" i_length="84">
            <donor d_prob="0.000" d_score="0.81"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40920" g_stop="41100" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="628" r_length="180" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41214" g_stop="41295" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="706" r_length="78" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E426196" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40181" e_stop="40189"/>
          <exon e_start="40306" e_stop="40639"/>
          <exon e_start="40727" e_stop="40835"/>
          <exon e_start="40920" e_stop="41100"/>
          <exon e_start="41214" e_stop="41295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAAGGTGATTTTCTCTAAGACTAAGACTACTCTGCTGCAGTGTTACTACCTTATGTATAAGAGATTGTTGTGTGGTCTTGTTTCTGTTGTTCATTCATATATTTTTTGCCTCACCTCTAGGGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTG-CA-CGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGT</genome_strand>
        <mrna_strand>CAGAGAAAG....................................................................................................................GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAACGCAAATCATCCACCAATAGAAAGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGACTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGCAGTCGACATGGGAAGAAAAAAGGCAGAAAGAGCACGAGTAGAAGAGTTCATCGAAATAAAAGATCGAGACGCAAGCG.......................................................................................GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCAT--G-AGCAGCAGCA---GTGATAGCTCCGATGATGAAAATGGCAGGCCCAATATTTCGGCCACCGAAAAGGT....................................................................................-TTNGGTGAAGAAATCATCAAACCCTGTCAAAGAACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAATATCTAAGAACGGTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAACTGACAGGACTCTCGCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCGCAACACCAAGTCCTAAGGGAAAG-CAAGACCCAGCCGCAGGAGCAGTCGAAG-ATGAGCCCAG-AAAAGTA-CTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456290" ref_strand="+" ref_description="SGN-E456290 [cSTS-29-G17]">
      <seq>cagagaaagtgaaaaataagatgtccgcgagagctctttcctctgatgatgattcagacagtcaagataaggggaaacgcaaatcatccaccaatagaaagaaaaagaaaaagaggagatacctcttcatctgattcttacagttctgagacagatactgattcctcttcagactctgactcagattctaagctggactcctattcttctagttcttcaggtgatgaaaggcgtaagaagaggaagaggtcaactaagaaagaaagcagtcgacatgggaagaaaaaaggcagaaagagcacgagtagaagagttcatcgaaataaaagatcgagacgcaagcggagctctgagagttctagtgacacagacagtcagagcatgagcagcagcagtgatagctccgatgatgaaaatggcaggcccaatatttctcgcaaaaaaaggttggttgaagaaatcatcaaaccctgtcaaagaacaagctgttttgaagcagcaacagaatcttgaagagggtgaaatatctaagaacggtaagcttccaaataatggtcatggtgggagatgtacaaactgacaggactctcgccacaaatcatcaatctgataattcgagcagatccaggagcgcaacaccaagtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40004" stop="41416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40181" g_stop="40189" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116">
            <donor d_prob="0.839" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40306" g_stop="40639" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="344" r_length="335" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87">
            <donor d_prob="0.933" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40727" g_stop="40833" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="446" r_length="102" r_score="0.869"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40920" g_stop="41100" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="628" r_length="182" r_score="0.928"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41214" g_stop="41233" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="648" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E456290" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40181" e_stop="40189"/>
          <exon e_start="40306" e_stop="40639"/>
          <exon e_start="40727" e_stop="40833"/>
          <exon e_start="40920" e_stop="41100"/>
          <exon e_start="41214" e_stop="41233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAAGGTGATTTTCTCTAAGACTAAGACTACTCTGCTGCAGTGTTACTACCTTATGTATAAGAGATTGTTGTGTGGTCTTGTTTCTGTTGTTCATTCATATATTTTTTGCCTCACCTCTAGGGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATA-CTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCT-GCACGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGT-GGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTA</genome_strand>
        <mrna_strand>CAGAGAAAG....................................................................................................................TGAAAAATAAGATGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGATAAGGGGAAACGCAAATCATCCACCAATAGAAAGAAAAAGAAAAAGAGGAGATACCTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGACTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGCAGTCGACATGGGAAGAAAAAAGGCAGAAAGAGCACGAGTAGAAGAGTTCATCGAAATAAAAGATCGAGACGCAAGCG.......................................................................................GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCAT--G-AGCAGCAGCA---GTGATAGCTCCGATGATGAAAATGGCAGGCCCAATATTTCTCGCAAAAAAAG......................................................................................GTTGGTTGAAGAAATCATCAAACCCTGTCAAAGAACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAATATCTAAGAACGGTAAGCTTCCAAATAATGGTCATGGTGGGAGATGTACAAACTGACAGGACTCTCGCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCGCAACACCAAGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329504" ref_strand="+" ref_description="SGN-E329504 [cTOD-11-A23]">
      <seq>gaaataaaagatcgagacgcaagtggagctctgagagttctagggacacagacagtcagagcatgagcagcagcagcagcggtgatagctctgatgatgaaaatgacaggccaaataattctgcacgaaaaggtttggtgaagaaagggtnaaaccctgtcaaaggacaagctgtttttgaagcagcaacagaatcttgaagagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40315" stop="41293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40615" g_stop="40639" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40727" g_stop="40833" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="132" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40920" g_stop="40993" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E329504" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40615" e_stop="40639"/>
          <exon e_start="40727" e_stop="40833"/>
          <exon e_start="40920" e_stop="40993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAAAGATCGAGACGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTG-TTTTGAAGCAGCAACAGAATCTTGAAGAGGGT</genome_strand>
        <mrna_strand>GAAATAAAAGATCGAGACGCAAGTG.......................................................................................GAGCTCTGAGAGTTCTAGGGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAG......................................................................................GTTTGGTGAAGAAAGGGTNAAACCCTGTCAAAGGACAAGCTGTTTTTGAAGCAGCAACAGAATCTTGAAGAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559461" ref_strand="+" ref_description="SGN-E559461 [18962]">
      <seq>cgcaagcggagctctgagagttctagtgacacagacagtcagagcatgagcagcagcagtgatagctccgatgatgaaaatggcaggcccaatatttctgcacgaaaaggtttggtgaagaaatcatcaaaccctgtcaaagaacaagctgttttgaagcagcaacagaatcttgaagagggtgaaatatctaagaacggtaagcttccaaataatggtcatggtggagatgtacaaactgacaggactctcgccacaaatcatcaatctgataattcgagcagatccaggagcgcaacaccaagtcctaagggaaagccaagacccagccgcaggagcagtcgaagtatgagcccagaaaaagtacctgctagacttggtcaaaatggtggaagtcttcaaattgaatcaaaggagaaaagtctttcaaaaagtccttcaccaaaagctactcagccatctcgctctagtcctggcagggatttatccagaaaccgttctccagatggaacttcaaaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40419" stop="41746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40632" g_stop="40639" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40727" g_stop="40833" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="109" r_length="101" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40920" g_stop="41100" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="290" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41214" g_stop="41446" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="523" r_length="233" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E559461" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40632" e_stop="40639"/>
          <exon e_start="40727" e_stop="40833"/>
          <exon e_start="40920" e_stop="41100"/>
          <exon e_start="41214" e_stop="41446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGTGGTATCATTTATGTCCGCCCTTATTTGTGTTATTAAGCTTTACTTGATTGCTGGTTCAGTTGATTTATTTTGTTTTCATTGCATTCAGGAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAG</genome_strand>
        <mrna_strand>CGCAAGCG.......................................................................................GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCAT--G-AGCAGCAGCA---GTGATAGCTCCGATGATGAAAATGGCAGGCCCAATATTTCTGCACGAAAAG......................................................................................GTTTGGTGAAGAAATCATCAAACCCTGTCAAAGAACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAATATCTAAGAACGGTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAACTGACAGGACTCTCGCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCGCAACACCAAGTCCTAAGGGAAAGCCAAGACCCAGCCGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGCTAGACTTGGTCAAAATGGTGGAAGTCTTCAAATTGAATCAAAGGAGAAAAGTCTTTCAAAAAGTCCTTCACCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGGCAGGGATTTATCCAGAAACCGTTCTCCAGATGGAACTTCAAAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459844" ref_strand="+" ref_description="SGN-E459844 [cPRO-29-K7]">
      <seq>tcacctcgatcgagacgcaagcggagctctgagagttctagtgacacagacagtcagagcatgagcagcagcagtgatagctccgatgatgaaaatggcaggcccaatatttctgcacgaaaaggtttggtgaagaaatcatcaaaccctgtcaaagaacaagctgttttgaagcagcaacagaatcttgaagagggtgaaatatctaagaacggtaagcttccaaataatggtcatggtggagatgtacaaactgacaggactctcgccacaaatcatcaatctgataattcgagcagatccaggagcgcaacaccaagtcctaagggaaagccaagacccagccgcaggagcagtcgaagtatgagcccagaaaaagtacctgctagacttggtcaaaatggtggaagtcttcaaattgaatcaaaggagaaaagtctttcaaaaagtccttcaccaaaagctactcagccatctcgctctagtcctggcagggatttatccagaaaccgttctccagatggaacttcaaaacgagtccgtaaaggccgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgagcgttcatcttataggccttataaccagggtgggagaaattttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacagggacggtacagacagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40419" stop="42012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40727" g_stop="40833" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="124" r_length="101" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40920" g_stop="41100" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41214" g_stop="41573" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="665" r_length="360" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41656" g_stop="41712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="722" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E459844" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40727" e_stop="40833"/>
          <exon e_start="40920" e_stop="41100"/>
          <exon e_start="41214" e_stop="41573"/>
          <exon e_start="41656" e_stop="41712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAGGTGTCAACTTCTTGTTTATTCACGGAGGTGGAAAAACATGAATTATAAGCAGATTCACCAATTTATTCGTTGATCTTATGTTACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTC</genome_strand>
        <mrna_strand>GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCAT--G-AGCAGCAGCA---GTGATAGCTCCGATGATGAAAATGGCAGGCCCAATATTTCTGCACGAAAAG......................................................................................GTTTGGTGAAGAAATCATCAAACCCTGTCAAAGAACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAATATCTAAGAACGGTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAACTGACAGGACTCTCGCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCGCAACACCAAGTCCTAAGGGAAAGCCAAGACCCAGCCGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGCTAGACTTGGTCAAAATGGTGGAAGTCTTCAAATTGAATCAAAGGAGAAAAGTCTTTCAAAAAGTCCTTCACCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGGCAGGGATTTATCCAGAAACCGTTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGCCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAGCGTTCATCTTATAGGCCTTATAACCAGGGTGGGAGAAATTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGGACGGTACAGACAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212780" ref_strand="+" ref_description="SGN-E212780 [cLEC-73-P2]">
      <seq>tacaggtttggtgaagaaattgtcaaaccctgtcaaaggacaagctgttttgaagcagcaacagaatcttgaagagggtgaagtgtctaagaacgctaagcttccaaataatggtcatggtggagatgtacaaaacgacaggactctctccacaaatcatcaatctgataattcgagcagatccaggagcacaacaccaagtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40615" stop="41824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40915" g_stop="41100" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41214" g_stop="41524" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="497" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E212780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40915" e_stop="41100"/>
          <exon e_start="41214" e_stop="41524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTT</genome_strand>
        <mrna_strand>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG.................................................................................................................GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612174" ref_strand="+" ref_description="SGN-E612174 [61934]">
      <seq>ttcgccacaaatcatcaatctgacaattcgggcagatccaggagcgcaacaccaagtcctaagggaaagccaagacccagccgcaggagcagtcaaagtatgagcccagaaaaagtacctgctagacttggtcaaaatggtggaagtcttcaaattgaatcaaaggagaaaagtctttcaaaaagtccttcaccaaaagctactcagccatctcgctctagtcctggcagggatttatccagaaaccgttctccagatggaactttaaaacgagtccgtaaaggccgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgagcgttcatcctataggccttataaccagggtgggagaaattttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacagggacggtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcggagtaggagtgtttctcacagccctaggcgtgagagtcgtcgaagtaggagcccttcacgcagtccttcccccagagaaaagcggcagacaatcagtgacagattgaagtctcgtcttgggcctcgtgtggatgatcagcattctattccgactaggaggtcagcctcaagatctagaagccgggactctacgaatcctcgatctcctgctgctgctccaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40761" stop="42474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41060" g_stop="41100" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.943" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41214" g_stop="41573" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="401" r_length="360" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="482" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.887" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41932" g_stop="42174" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="725" r_length="243" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E612174" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41060" e_stop="41100"/>
          <exon e_start="41214" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAGGTTCCTTCCTTAGCTTTACTGAATGTTTTATGATGTGGCACTTCTTTTTGTAGCTGCTCATATTTGTTAGATATCTTCACCAAGTGGATTCTTTCTCTTTGCATGGTAAACAGGAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAA</genome_strand>
        <mrna_strand>TTCGCCACAAATCATCAATCTGACAATTCGGGCAGATCCAG.................................................................................................................GAGCGCAACACCAAGTCCTAAGGGAAAGCCAAGACCCAGCCGCAGGAGCAGTCAAAGTATGAGCCCAGAAAAAGTACCTGCTAGACTTGGTCAAAATGGTGGAAGTCTTCAAATTGAATCAAAGGAGAAAAGTCTTTCAAAAAGTCCTTCACCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGGCAGGGATTTATCCAGAAACCGTTCTCCAGATGGAACTTTAAAACGAGTCCGTAAAGGCCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAGCGTTCATCCTATAGGCCTTATAACCAGGGTGGGAGAAATTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGGACGGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGGAGTAGGAGTGTTTCTCACAGCCCTAGGCGTGAGAGTCGTCGAAGTAGGAGCCCTTCACGCAGTCCTTCCCCCAGAGAAAAGCGGCAGACAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTGGATGATCAGCATTCTATTCCGACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGGGACTCTACGAATCCTCGATCTCCTGCTGCTGCTCCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731214" ref_strand="+" ref_description="SGN-E731214 [LA26BH09]">
      <seq>ccatgtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatataagtgactaaatttgcagaagacttttggccctaggttaaaaccttgttccatcaaaatgtcgccttagctggggatttccaactcaaattttatcattttgggtttcagaaaacttagcagttccaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40924" stop="42736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41224" g_stop="41573" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="431" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41932" g_stop="42425" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="929" r_length="498" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="939" polyA_stop="951"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E731214" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41224" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGG-CCTAGGTTTAAACCTTGTTCCATC-AGATGTTCGCTTAGCT-GGGATTTCCAACTC-AATTTTATCATTTTGTGTTTCAGTAAACTA</genome_strand>
        <mrna_strand>CCATGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATAAGTGACTAAATTTGCAGAAGACTTTTGGCCCTAGGTTAAAACCTTGTTCCATCAAAATGTCGCCTTAGCTGGGGATTTCCAACTCAAATTTTATCATTTTGGGTTTCAGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731891" ref_strand="+" ref_description="SGN-E731891 [LA28BH09]">
      <seq>ccaagtcctaaggggaagccaagaccgagcggcaggagcagtcgaagtatgagcccagaaaaagtacctggtagacttggtcaaaatggtgcaagtcttccaattgaatcaaaggagagaagtctttcaaaaagtcctcctccaaaagctactcagccatctcgctctagtcctgtcagggatttatccagaaatcattctccagatggaacttcaaaacgagtccgtaaaggtcgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagagccaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="40924" stop="42007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41224" g_stop="41573" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="412" r_length="62" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E731891" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41224" e_stop="41573"/>
          <exon e_start="41656" e_stop="41719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGA</genome_strand>
        <mrna_strand>CCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGA--GCCAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477335" ref_strand="+" ref_description="SGN-E477335 [cSTB-47-L24]">
      <seq>ttcaaattgaatcaaaggagaaaagtctttcaaaaagtccttcaccaaaagctactcagccatctcgctctagtcctggcagggatttatccagaaaccgttctccagatggaacttcaaaacgagtccgtaaaggccgtggcttcactgatcggtattcatttgcaagacgctatcgcaccccatctcctgagcgttcatcttataggccttataaccagggtgggagaaattttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacagggacggtacagacagtcaccaagaggcagaagtccccccagataccagcgcaggagtcggagtaggagtgtttctcacagccctaggcgtgagagtcgtcgaagtaggagcccttcacgcagtccttcccccagagaaaagcggcagacaatcagtgacagattgaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="41021" stop="42362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41321" g_stop="41573" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="334" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="0.94"/>
            <acceptor a_prob="0.887" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41932" g_stop="42062" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="465" r_length="131" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E477335" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41321" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTC</genome_strand>
        <mrna_strand>TTCAAATTGAATCAAAGGAGAAAAGTCTTTCAAAAAGTCCTTCACCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGGCAGGGATTTATCCAGAAACCGTTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGCCGTGGCTTCACTGATCGGTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAGCGTTCATCTTATAGGCCTTATAACCAGGGTGGGAGAAATTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGGACGGTACAGACAGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGGAGTAGGAGTGTTTCTCACAGCCCTAGGCGTGAGAGTCGTCGAAGTAGGAGCCCTTCACGCAGTCCTTCCCCCAGAGAAAAGCGGCAGACAATCAGTGACAGATTGAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426197" ref_strand="-" ref_description="SGN-E426197 [STM-46-M19]">
      <seq>gtaaaggccgtggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgagcgttcatcttataggccttataaccagggtgggagaaattttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacagggacggtacagacagtcaccaagaggcagaagtccccccagataccagcgcaggagtcggagtaggagtgtttctcacagccctaggcgtgagagtcgtcgaagtaggagcccttcacgcagtccttcccccagagaaaagcggcagacaatcagtgacagattgaagtctcgtcttgggcctcgtgtggatgatcagcattctattccgactaggaggtcagcctcaagatctagaagccgcgactctacgactcctcgatctcctgctgctgctccaaggaagcacagtgggaaagtaggatctgcgtcacctaatagttcgagatcaacctccccacctcgacagaggggtctagtctcatatgaggatatcagtcctaccgggacaaactaatctgtgtacccttcatgctcatatatgagtgactaaatttgcagaaaacttatggcctaggtttaaaccttgtttcatcagatgttgcttagctgggattgccaactcaattttatcatttgtgtttcgagtgactagcagttcgacatgcaataagttttgaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="41150" stop="42742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41450" g_stop="41573" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="205" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="0.94"/>
            <acceptor a_prob="0.887" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41932" g_stop="42442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="714" r_length="509" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E426197" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426197" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41450" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAAT</genome_strand>
        <mrna_strand>GTAAAGGCCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAGCGTTCATCTTATAGGCCTTATAACCAGGGTGGGAGAAATTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGGACGGTACAGACAGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGGAGTAGGAGTGTTTCTCACAGCCCTAGGCGTGAGAGTCGTCGAAGTAGGAGCCCTTCACGCAGTCCTTCCCCCAGAGAAAAGCGGCAGACAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTGGATGATCAGCATTCTATTCCGACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACGACTCCTCGATCTCCTGCTGCTGCTCCAAGGAAGCACAGTGGGAAAGTAGGATCTGCGTCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACAGAGGGGTCTAGTCTCATATGAGGATATCAGTCCTACCGGGACAAACTAATCTGTGTACCCTTCATGCTCATATATGAGTGACTAAATTTGCAGAAAACTTATGGCCTAGGTTTAAACCTTGTTTCATCAGATGTT-GCTTAGCTGGGATTGCCAACTCAATTTTATCA-TTTGTGTTTCGAGTGACTAGCAGTTCGACATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553551" ref_strand="-" ref_description="SGN-E553551 [cTSC-1-H21]">
      <seq>ggcttcactgatcgttattcatttgcaagacgctatcgcaccccatctcctgaacgttcatcttacaggccttattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatatgagtgactaaatttgcagagaacttttggcctaggtttaaaccttgttccatcagatgttcgcttagctgggatttccaactcaattttatcattttgtgtttcagtaaactagcagttcgacattgaatgttttacttatggaaaaagggtctcatttagcctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="41161" stop="42780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41461" g_stop="41573" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41932" g_stop="42480" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="743" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E553551" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41461" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTA</genome_strand>
        <mrna_strand>GGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379253" ref_strand="-" ref_description="SGN-E379253 [TUS-3-G10]">
      <seq>tattaccagggtgggagaaactttcaggggaatcgtgataggtactcaagctatagaagctattctggtcgctctccacaggtacagtacagacggtcaccaagaggcagaagtccccccagataccagcgcaggagtcgaagtaggagtgtttctcgcagccctaggcgtgagagtcgtcgatgtaggagcccttcacgcagtccttcccctagagaaaagcggcagccaatcagtgacagattgaagtctcgtcttgggcctcgtgtagatgatcagcattctattccaactaggaggtcagcctcaagatctagaagccgcgactctactactcctcgatccccttctgctgctccaaggaagcacagtaggaaagtaggatccgcatcacctaatagttcgagatcaacctccccacctcgaccgaggggtctagtctcatatgaggatatcagtccctgtgggacaaactaatctctgtaccctccatgctcatatatgagtgactaaatttgcagagaacttttggcctaggtttaaaccttgttccatcagatgttcgcttagctgggatttccaactcaattttatcattttgtgtttcagtaaactagcagttcgacattgaatgttttacttatggaaaaagggtctcatttagcctcgtactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="41233" stop="42791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41533" g_stop="41573" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41656" g_stop="41736" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="122" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41932" g_stop="42490" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="681" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E379253" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41533" e_stop="41573"/>
          <exon e_start="41656" e_stop="41736"/>
          <exon e_start="41932" e_stop="42490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAGGTAAAAGCGAGTTCAAAAGTAAAAATGTCTGTGAGAGGGGCAAGTCTGTTATGCATGCTAAAATACATTGTTATCTTTTTAGGTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAGGTTTTCCTCTTGAATCTCTGTCTATTGGTCTTTTTGTTCTGAATGTCTCTTCATACGTCCAAAGTTCCAGTGCTTCAATATGCTCTTTCTATGATATCTGAGTTTTGGTATACTCTTTTGGTTCTTTTAGGATTATAAGCATGTAAAAATGACTTCACATCCCTTAATCCCCTTTCCGTTTTCTTTGTTCATTAGATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</genome_strand>
        <mrna_strand>TATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG..................................................................................GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG...................................................................................................................................................................................................ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620561" ref_strand="+" ref_description="SGN-E620561 [71263]">
      <seq>ctcacagccctaggcgtgagagtcgtcgaagtaggagcccttcacgcagtccttcccccagagaagagcggcagacaatcagtgacagattgaagtctcgtcttgggcctcgtgtggatgatcagcattctattccgactaggaggtcagcctcaagatctagaagccgcgactctacaactcctcgatctcctgctgctgctccaaggaagcacagtgggaaagtaggatctgcatcacctaatagttcgagatcaacctccccacctcgacagaggggtctagtctcatatgaggatatcagtcccaccgggacaaactaatctgtgtacccttcatgctcatatatgagtgactaaatttgcagaaaacttatgcctaggtttaaaccttgtttcatcagatgttgcttagctgggattgccaactcaaatttatcattttgtgtttcagtaaactagcagttcgacattgaatgttttatttatggaaaaagggtcttatttaccctcatgttttgacaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="+" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="41664" stop="42792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41964" g_stop="42477" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="535"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="+" ref_id="SGN-E620561" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41964" e_stop="42477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTC</genome_strand>
        <mrna_strand>CTCACAGCCCTAGGCGTGAGAGTCGTCGAAGTAGGAGCCCTTCACGCAGTCCTTCCCCCAGAGAAGAGCGGCAGACAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTGGATGATCAGCATTCTATTCCGACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACAACTCCTCGATCTCCTGCTGCTGCTCCAAGGAAGCACAGTGGGAAAGTAGGATCTGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACAGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCACCGGGACAAACTAATCTGTGTACCCTTCATGCTCATATATGAGTGACTAAATTTGCAGAAAACTTAT-GCCTAGGTTTAAACCTTGTTTCATCAGATGTT-GCTTAGCTGGGATTGCCAACTCAAATTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTATTTATGGAAAAAGGGTCTTATTTACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210363" ref_strand="+" ref_description="SGN-E210363 [cLEC-35-P13]">
      <seq>acgaggctaaatgagaccctttttccataagtaaaacattcaatgtcgaactgcgagcttactgatttactatttttatttaattgaggtggaaatcccagctaagcgaacatctgatggaacaaggtttaaacctaggccaaaagttctctgcaaatctagtcactcatatatgagcatggagggtacagagattagtttgtcccacagggactgatatcctcatatgagactagacccctcggtcgaggaggggaggttgatctcgaactatcaggcgatgcggatcctactttcctactgtgcttccttggagcaacagaaggggatcgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="42779" stop="41845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42479" g_stop="42145" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E210363" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42479" e_stop="42145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCTAGTTTACTGAAACAC-AAAATGATAAAATTGAGTTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATTTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGTGGGGAGGTTGATCTCGAACTATTAGGTGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAGCAGAAGGGGATCGAGGA</genome_strand>
        <mrna_strand>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCGAGCTTACTGATTTACTATTTTTATTTAATTGAGGTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATCTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGAGGGGAGGTTGATCTCGAACTATCAGGCGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAACAGAAGGGGATCGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689876" ref_strand="+" ref_description="SGN-E689876 [LH_Ea02A18]">
      <seq>cgatcgtggaatccgagaggcatacagagttctgaaacctgcaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatatagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggaatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcgactaaagttgatataattttccaaatgtagactctactcctttactatagctctttatatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44631" stop="2956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44333" g_stop="44048" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="43022" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="622" r_length="336" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43021" i_stop="42423" i_length="599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42422" g_stop="42402" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="643" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E689876" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44333" e_stop="44048"/>
          <exon e_start="43339" e_stop="43022"/>
          <exon e_start="42422" e_stop="42402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAACCTGGTGACTTTGTAACTCCTTATAATGCTCCTACTATTAAGAACAACACTTGTGTAAAATGTTAGTTGTGTCATATAACTTTGAATTTATCCACTAAATTTGAATATTTCAAAGTGCTAACCTAACAAATGCATAAAATCTACATTAGATATAGAACAAATCCTATCATAATAGAAAAGGAACGACTCCTAGATTTCAATGTGGGTGTCAACACACTGATGCGATAGGACTCAACTTGGCATTGCTCTTGAACGAATGCCCACCTACCCTATTTCTAACAAGATAGGTGCACCCTATTCTAATTCACCATTTCATAATAGTGAAATCTTGAATACACCTGTGTCAATAATAATCACTTTATTATAATCCTTTTTGGCTAGCTCTTTCATCAAATAGCTAAGCTCAACGGTCATCAATCAACAGAAATGATTTATAACTTCAAAACTTTGTATACGAACCCAACGCCAACTCGATATCTCAACTATTGAGAAATAACCTTTTTTTTATAGTACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCTAGTTTACTGAAACACAAAATGAT</genome_strand>
        <mrna_strand>CGATCGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGCAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATATAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGAATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746371" ref_strand="+" ref_description="SGN-E746371 [GI|47104273]">
      <seq>attaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttattatctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45967" stop="42691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45667" g_stop="45059" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44048" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="916" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43339" g_stop="42991" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1265" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1266" polyA_stop="1278"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E746371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1265</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45667" e_stop="45059"/>
          <exon e_start="44354" e_stop="44048"/>
          <exon e_start="43339" e_stop="42991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</genome_strand>
        <mrna_strand>ATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238725" ref_strand="+" ref_description="SGN-E238725 [cLEL-9-A15](-)">
      <seq>aagaatacatagagtggtttgagaaggcaggattcacgaacgtccaactaaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44502" stop="42697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44202" g_stop="44048" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="42998" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="497" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="516"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E238725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44202" e_stop="44048"/>
          <exon e_start="43339" e_stop="42998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATT</genome_strand>
        <mrna_strand>AAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGAACGTCCAACTAAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216228" ref_strand="+" ref_description="SGN-E216228 [cLEL-13-H4](-)">
      <seq>aggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccgaatgtagactctactcctttactatagctcttttcggatgacttcnaccttttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44416" stop="42697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44116" g_stop="44048" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="43001" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="408" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="426"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E216228" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44116" e_stop="44048"/>
          <exon e_start="43339" e_stop="43001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</genome_strand>
        <mrna_strand>AGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCGAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCNACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238919" ref_strand="+" ref_description="SGN-E238919 [cLEL-9-A15](-)">
      <seq>taaatccatttgtctttatgctgcggtttcttttgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactctactcctttactatagctcttttcggatgacttcaaacttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="43605" stop="42697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43305" g_stop="43001" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="327"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E238919" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43305" e_stop="43001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</genome_strand>
        <mrna_strand>TAAATCCATTTGTCTTTATGCTGCGGTTTCTTTTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282334" ref_strand="-" ref_description="SGN-E282334 [cLER-18-K7]">
      <seq>catgggatgttctgtaactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcaactaaagttgatataattttccaaatgtagactccactcctttactatagctcttttcggatgacttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44402" stop="42706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44102" g_stop="44048" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="43006" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="389" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="403"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E282334" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44102" e_stop="44048"/>
          <exon e_start="43339" e_stop="43006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAA</genome_strand>
        <mrna_strand>CATGGGATGTTCTGTAACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCCACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693716" ref_strand="+" ref_description="SGN-E693716 [LH_Ea02A18](-)">
      <seq>aacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggaatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagattggtctcgactaaagttgatataattttccaaatgtagaaacggctcctttactatagctctttatattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44631" stop="42721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44331" g_stop="44048" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="43021" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="621" r_length="337" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E693716" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44331" e_stop="44048"/>
          <exon e_start="43339" e_stop="43021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTT</genome_strand>
        <mrna_strand>AACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGAATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGATTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGAAACGGCTCCTTTACTATAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690516" ref_strand="+" ref_description="SGN-E690516 [LH_Ea03L10]">
      <seq>cgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggttccttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggttaaagaccaggttgttcctgaaggcgaacctctgtgagagaccaagctacttaatactactggctgatccttgtaccgttgcacctggttctagttagcgcagttgtgcatctcacttttatgcctagaattttctgtgaatgacatcttagcttggtctcgactaaagttgatataattttccaaatgtagactctactcctttactataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="44419" stop="42728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44119" g_stop="44048" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43339" g_stop="43028" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="402" r_length="330" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="416"/>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E690516" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44119" e_stop="44048"/>
          <exon e_start="43339" e_stop="43028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACT-G--G---C-TG-A----T---CC---TTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATA</genome_strand>
        <mrna_strand>CGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTCCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTGTACCGTTGCACCTGGTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCGACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206939" ref_strand="+" ref_description="SGN-E206939 [cLEC-33-K15]">
      <seq>gagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccacaagcagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatactatgttttggttcctatttacatgtgggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45522" stop="42919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45222" g_stop="45059" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44048" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="471" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43339" g_stop="43219" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="592" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E206939" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45222" e_stop="45059"/>
          <exon e_start="44354" e_stop="44048"/>
          <exon e_start="43339" e_stop="43219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTA</genome_strand>
        <mrna_strand>GAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCACAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553484" ref_strand="+" ref_description="SGN-E553484 [cTSC-1-E13]">
      <seq>attttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctacaccaggggattcaccactgcagcttggcccaaaacagaagatgtgacaaaacctgtaaatccatttgtctttatgctgcggtttcttctgggtgcaacggcagcaacatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45955" stop="42948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45655" g_stop="45059" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44048" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="904" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43339" g_stop="43248" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="995" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E553484" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>996</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45655" e_stop="45059"/>
          <exon e_start="44354" e_stop="44048"/>
          <exon e_start="43339" e_stop="43248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAGGTAATTTCTTATGTACTTTCTAAAACAAAATTACTTATTTAAGAGTACATAATTTGGTTTTCCTGTTCTGATAGTTTTATTGTCTTGTTTCTTCTATTGGGGAGAGGGGTAATTGTTTGAGTAAGCAGTCTGTAATATCTTGATAAAGTTTATCATTGTGTTTCCCATGATATATGAGGGAACCGAATTTGCTCAAGTGTATTACATCACCGTAAAATGTTAGAATGCACCTGTAACTTCCTAGCAATTAATTGAAGTTTGCTGAAGAAAGAATTTTGATGGAATATACGTTTAGAGAAGGGATGAGGATAGGGACGGAGCTACAAGCCTGTCTATGGGTTCAACAGAACCCAATAGTAGCTTTGGCCCATACCTTGTTTTTGTGTTTAAAAATACACTTCACATGTATAAATAATTCATCTAGAACCCAGTAAGATGTCTTTTATGTAAATTCAAAATTCTAGTTTCGTCTGTGACATCATGATACCATTCCTTAAACAAATAGTTATATGTTCACCATTTACAAGTTCTAATTGGTTGCCTTGGAGTGAACTTTGAATGTATGTTATGATGTTAGGCTTTTCCTGCATCTCCTTTTATCTCACTAGACAAGAGCAATATCTCCTTTTATCAGAAGCAAAGTTTATCATTGTTTTTAGCCATGTTCGTTCAATACTTATATTAGGCTTGTTGTATGCATAATTGCAGCTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTA</genome_strand>
        <mrna_strand>ATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCCCAAAA-CAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622115" ref_strand="+" ref_description="SGN-E622115 [72478]">
      <seq>caaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgtgattaatcctgggcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcagctagctaaggctaaggaaaaggagcctttgaaggaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggcctgacccacaacgtggaatcagagaggcatacagagttttgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttcccgaaggaggaagaatacatagagtggtttgagaaggcaggattcacagatgtccaactgaagaagattggccaaaatggtatcgtggagttcgaaggcatgggcttatcatggggatgttctgttactggtgttaaagtctacaccaggggattcaccacctgcagcttggccaaaagcagaagagttgacaaaacttataaattctaatttgtctttatgctggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45772" stop="43746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45472" g_stop="45059" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44048" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="723" r_length="309" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E622115" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45472" e_stop="45059"/>
          <exon e_start="44354" e_stop="44048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCAT-GGGATGTTCTGTTACTGGTGTT-AAGTCTACACCAGGGGATTCACCA-CTGCAG</genome_strand>
        <mrna_strand>CAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTGATTAATCCTGGGCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAGCTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAGGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCTGACCCACAACGTGGAATCAGAGAGGCATACAGAGTTTTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCGAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACAGATGTCCAACTGAAGAAGATTGG-CCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGGATGTTCTGTTACTGGTGTTAAAGTCTACACCAGGGGATTCACCACCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729571" ref_strand="+" ref_description="SGN-E729571 [LA21BH03]">
      <seq>atcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggtttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagatcggcccnaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactggtgttaagtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45918" stop="43769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45618" g_stop="45059" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44069" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="845" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E729571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45618" e_stop="45059"/>
          <exon e_start="44354" e_stop="44069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACA</genome_strand>
        <mrna_strand>ATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGG-TTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCNAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554291" ref_strand="+" ref_description="SGN-E554291 [cTSC-3-N14]">
      <seq>ggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgagaaggcaggattcacggacgtccaactgaagaagaatcggcccaaaatggtatcgtggagttcgaaggcatgggcttatcatgggatgttctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45913" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45613" g_stop="45059" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44083" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="828" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E554291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45613" e_stop="45059"/>
          <exon e_start="44354" e_stop="44083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAG-ATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTG</genome_strand>
        <mrna_strand>GGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGAATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690146" ref_strand="+" ref_description="SGN-E690146 [LH_Ea02L24]">
      <seq>ctgtaattaggctttttctatagttttgtagccattaaagcttcgattttgacaactttcagttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggttcagatttcaatgggaatcaatttcccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacagaaatttaactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaatcggtcctgtgcaccctaccttttggttgtctcgattctttgctgatgtgtggatgctcttccctaaggaggaagaatacatagagtggtttgaaaaagcaggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46000" stop="43867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45700" g_stop="45059" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44167" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="830" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E690146" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45700" e_stop="45059"/>
          <exon e_start="44354" e_stop="44167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCA</genome_strand>
        <mrna_strand>CTGTAATTAGGCTTTTTCTATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAACTTTCAGTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGTTCAGATTTCAATGGGAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGAAATTTAACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATCGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGATTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAAAAAGCAGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708920" ref_strand="+" ref_description="SGN-E708920 [FA42AE12]">
      <seq>ccgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgcctcttcctaaggaggaagaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46012" stop="43894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45714" g_stop="45059" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44194" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="817" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E708920" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45714" e_stop="45059"/>
          <exon e_start="44354" e_stop="44194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACA</genome_strand>
        <mrna_strand>CCGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCCTCTTCCTAAGGAGGAAGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726244" ref_strand="+" ref_description="SGN-E726244 [LA11BA06]">
      <seq>tgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcaccctaccttttggttgtctcgtttctttgctgatgtgtggatgctcttccctaaggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46010" stop="43898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45710" g_stop="45059" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44199" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="808" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E726244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45710" e_stop="45059"/>
          <exon e_start="44354" e_stop="44199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGA</genome_strand>
        <mrna_strand>TGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701282" ref_strand="+" ref_description="SGN-E701282 [FA15CB08]">
      <seq>taagggttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctggaggaaaggcgtgcttaattggtcctgtgcacccctaccttttggttgtctcgtttctttgctgatgtgtggatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46020" stop="43915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45720" g_stop="45059" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44215" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="803" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E701282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45720" e_stop="45059"/>
          <exon e_start="44354" e_stop="44215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCA-CCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCT</genome_strand>
        <mrna_strand>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313451" ref_strand="+" ref_description="SGN-E313451 [cTOA-13-D1]">
      <seq>actagttgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaagctaaggaaaaggagcctttgaaagaatgcaagataattgaaggtgatgctgaagatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaatccgagaggcatacagagttctgaaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45601" stop="43993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45301" g_stop="45059" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44293" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="305" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E313451" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45301" e_stop="45059"/>
          <exon e_start="44354" e_stop="44293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTG</genome_strand>
        <mrna_strand>ACTAGTTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAAGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAAGGTGATGCTGAAGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561569" ref_strand="+" ref_description="SGN-E561569 [16900]">
      <seq>attttgacgactttcatttcttgcatttgctcaactaattatggcaaattcaatactcatatctgngaactcaaagtttcagtctttgtaatagagtttccccaaatgggttaggctttgttggttcagatttcaatgggaatcaatttcccaagctgggtttatcaagaaccagttgtaaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgtgattaatcctgggcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcagctagctaaggctaaggaaaaggagcctttgaaggaatgcaagataattgagggtgatgctgaggatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggcctgtaccacaacgtggaatcagagaggcatacagagttttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45955" stop="43996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45655" g_stop="45059" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44296" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="657" r_length="59" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E561569" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45655" e_stop="45059"/>
          <exon e_start="44354" e_stop="44296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTG-GAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAAC</genome_strand>
        <mrna_strand>ATTTTGACGACTTTCATTTCTTGCATTTGCTCAACTAATTATGGCAAATTCAATACTCATATCTGNGAACTCAAAGTTTCAGTCTTTGTAATAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGTTCAGATTTCAATGGGAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAGTTGTAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTGATTAATCCTGGGCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAGCTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAGGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCTGTACCACAACGTGGAATCAGAGAGGCATACAGAGTTTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332955" ref_strand="+" ref_description="SGN-E332955 [cTOD-19-J1]">
      <seq>gcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcaagataattgagggtgatgctgaagatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatactggccggacccacaacgtggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45912" stop="44022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45612" g_stop="45059" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44354" g_stop="44322" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="587" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E332955" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45612" e_stop="45059"/>
          <exon e_start="44354" e_stop="44322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAGGTTTATGTTGCTCCCTCTTTAATTTTTCTAGCTCCGCTTTCAAGTTGCCTATAGTATGCTCCCGCCGTTTCAATTTGTTTGTATGGTTTTGACAAGACTTTTGAATACTGTGGTGTGTTTTAATCTTGTTGTGGCGTTAAACGTGTCTAAATAGAAAGTTGAAATTTCAAAGAGACATTCCTTTTTAAAATAGAAAGTGAGAAAAACAAATTGAAACAGAGGGAGTAGTAGATTGCTGTTGGGGTTTTTGGATGTTACAGCTAACTTAATCTGATAGAATGGTGTTTCACAGTAGAGCATTAGTCTTAGTGAGTACCATTGACTGATTTTGATTCTGCAGATATTTGGTCTCAAAGTTCAATACTTGTGTGTTAATTTTCCATATGGTCAGTCATTTTCAAGCATGGTTTATGCTTCCCTGTCCCTCTTGACCTGTTTTGGATGGTATATCTGTATTGTGGTGTTGGAAAGCTCCATGCATGCGAAAGAATATGAGAAAAGTCTTTTGACAATATGTAAGGCGGTAGTCACAAGTCGTGGATAGTTTGTATGGATACTCAACTCGGAACTAATAAGTACATATTTTGGCAGTAGATGAGTGCATTGATTTTAGTTTTAATATTTTCATTCTTCAATTGAAAAAAGCTGCAGCGATTTTCTGGAATTTTTCATAATTAAGTTCTTTGATCGTCTTCTCCTCTCAGTATTGAATACTGGCCGGACCCACAACGTGGAAT</genome_strand>
        <mrna_strand>GCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAAGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAATACTGGCCGGACCCACAACGTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322505" ref_strand="+" ref_description="SGN-E322505 [cTOB-26-O20]">
      <seq>gttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaaagatgcaagataattgagggtgatgctgangatcttccattctncactgactatgctgatagatatgtatctgctggaagtattgaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46015" stop="44752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45715" g_stop="45059" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E322505" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45715" e_stop="45059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG</genome_strand>
        <mrna_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAAGATGCAAGATAATTGAGGGTGATGCTGANGATCTTCCATTCTNCACTGACTATGCTGATAGATATGTATCTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451792" ref_strand="+" ref_description="SGN-E451792 [cSTS-14-A14]">
      <seq>tggaactcaaagtttcagtctttgtaatagagtttccccaaatgggttaggccttgttggttcagatttcaatgggaaatcaatttcccaagctgggtttatcaagaaccagttgtaaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagaattcatacagcacaaacaagaaagctttttggttttataggtttttatctattgtgtatgaatcatgtgattaatcctgggcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcagctagctaaggctaaggaaaaggagcctttgaaggaatgcaagataattgagggtgatgctgaagatcttccattctcaactgactatgctgatagatatgtatctgctggaagtattgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45892" stop="44752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45592" g_stop="45059" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E451792" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45592" e_stop="45059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGG-AATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAG-ATTCATCCAGCACAAACAAG-AAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATG-ATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG</genome_strand>
        <mrna_strand>TGGAACTCAAAGTTTCAGTCTTTGTAATAGAGTTTCCCCAAATGGGTTAGGCCTTGTTGGTTCAGATTTCAATGGGAAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAGTTGTAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGAATTCATACAGCACAAACAAGAAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGAATCATGTGATTAATCCTGGGCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAGCTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAGGAATGCAAGATAATTGAGGGTGATGCTGAAGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569550" ref_strand="+" ref_description="SGN-E569550 [14004]">
      <seq>tatctgggaactcaaagtttcagtctttgtaatagagtttcccccaaatgggttagctttgttggttcagatttcaatgggaatcaatttcccaagctgggtttatcaagaaccaattgtaaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgtgattaatcctgggcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgacatgtaatgccaagaatgttacaattcttgaccaatctcctcatcagctggctaagctaagaaaaggaacctttgaagaatgcaaataattgagggtgatgctgaggatcttccattctcaactgactatgctgattagatattgtatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45896" stop="44763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45598" g_stop="45063" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E569550" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45598" e_stop="45063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTT-CCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGA-TAGATA-TGTATCTGCTG</genome_strand>
        <mrna_strand>TATCT-GGGAACTCAAAGTTTCAGTCTTTGTAATAGAGTTTCCCCCAAATGGGTTA-GCTTTGTTGGTTCAGATTTCAATGGGAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAATTGTAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTGATTAATCCTGGGCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGA-CATGTA-ATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAGCTGGCTAA-GCTAA-GAAAAGGAACCTTTG-AAGAATGCAA-ATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATTAGATATTGTATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322575" ref_strand="+" ref_description="SGN-E322575 [cTOB-26-J18]">
      <seq>gttgttgatttatgacttcaattaggctttttcaatagttttgtagccattaaagcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattcttgaccaatctcctcatcaattagctaaggctaaggaaaaggagcctttgaaagaatgcagataattgagggtgatgctgaggatcttccattctcaactgactatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46015" stop="44781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45715" g_stop="45081" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E322575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45715" e_stop="45081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTG</genome_strand>
        <mrna_strand>GTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGC-AGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304789" ref_strand="+" ref_description="SGN-E304789 [cLEX-10-M1]">
      <seq>gcttcgattttgacaattttcatttcttgcatttgctcaactaatcatggcaaattcaatattcatctctggaactcaaagtttgagtgtttgtaacagagtttccccaaatgggttaggctttgttggctcagatttcaatgggaatcaattttccaagctgggtttatcaagaaccagttataaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatccagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgttattaatcctggtcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacaggaatttgactgtggtggatgttggtggtggcactggtttcactacattgggtatagttgagcatgtagatgccaagaatgttacaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="45961" stop="44890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45661" g_stop="45190" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E304789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45661" e_stop="45190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTT</genome_strand>
        <mrna_strand>GCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440479" ref_strand="+" ref_description="SGN-E440479 [cSTA-16-P4]">
      <seq>cttaaattaggcttttcaatagttttgtaaccattaaagcttcgattttgacgactttcatttcttgcatttgctcaactaattatggcaaattcaatactcatatctggaactcaaagtttcagtctttgtaatagagtttccccaaatgggttaggctttgttggttcagatttcaatgggaatcaatttcccaagctgggtttatcaagaaccaattgtaaaatcaaaaccctagctccaatttgcagtatttcaacatctaggccagcttcacagccaagattcatacagcacaaacaagaagctttttggttttataggtttttatctattgtgtatgatcatgtgattaatcctgggcattggactgaagatatgagggatgatgcacttgaaccagctgatcttaatgacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0194K19-YwBhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0194K19.1" temp_strand="-" temp_description="C09HBa0194K19.1  AC225328.1 htgs_phase:3 submitted_to_sgn_as:C09HBa0194K19 upload_account_name:spain">
        <position start="46000" stop="44979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45700" g_stop="45279" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0194K19.1" gen_strand="-" ref_id="SGN-E440479" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0194K19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45700" e_stop="45279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGA</genome_strand>
        <mrna_strand>CTTAAATTAGGC-TTTTCAATAGTTTTGTAACCATTAAAGCTTCGATTTTGACGACTTTCATTTCTTGCATTTGCTCAACTAATTATGGCAAATTCAATACTCATATCTGGAACTCAAAGTTTCAGTCTTTGTAATAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGTTCAGATTTCAATGGGAATCAATTTCCCAAGCTGGGTTTATCAAGAACCAATTGTAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATACAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTGATTAATCCTGGGCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>51</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="34665" PGL_stop="42490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34665" e_stop="34786"/>
            <exon e_start="37012" e_stop="37113"/>
            <exon e_start="37259" e_stop="37313"/>
            <exon e_start="38826" e_stop="38914"/>
            <exon e_start="39481" e_stop="39505"/>
            <exon e_start="39612" e_stop="39650"/>
            <exon e_start="39731" e_stop="39848"/>
            <exon e_start="40029" e_stop="40189"/>
            <exon e_start="40306" e_stop="40639"/>
            <exon e_start="40727" e_stop="40833"/>
            <exon e_start="40920" e_stop="41100"/>
            <exon e_start="41214" e_stop="41573"/>
            <exon e_start="41656" e_stop="41736"/>
            <exon e_start="41932" e_stop="42490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="0.926"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="34665" e_stop="34786" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="37012" e_stop="37113" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37259" e_stop="37313" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38826" e_stop="38914" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.936">
            <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39481" e_stop="39505" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.974">
            <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39612" e_stop="39650" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.824" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39731" e_stop="39848" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.858">
            <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40029" e_stop="40189" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.839" acc_prob="0.944">
            <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="40306" e_stop="40639" e_length="334"/>
          </exon>
          <intron i_serial="9" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="40727" e_stop="40833" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="0.950">
            <gDNA_exon_boundary e_start="40920" e_stop="41100" e_length="181"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41214" e_stop="41573" e_length="360"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41656" e_stop="41736" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.890" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="42490" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34665" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34677" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39848"/>
              <exon start="40029" stop="40158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34677" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39848"/>
              <exon start="40029" stop="40153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34687" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34700" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34700" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39760" stop="39848"/>
              <exon start="40029" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395700" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40181" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40615" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="40993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40632" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41060" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41321" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41450" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426197" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41461" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41964" stop="42477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCATCACTTCCATCGCGCCTCCAAGAATAAAAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTG : CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG : CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG : GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA : GGTGGTGATTTCTCCAAAGGGAATG : GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG : ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG : GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG : GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTG : GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAG : GTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG : GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG : GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG : ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</gDNA_template>
            <first_frame> S  F  H  H  F  H  R  A  S  K  N  K  K  W  R  L  L  F  V  K  L  I  H  S  F  V  E  R  L  R  H  F  G  L  Y  P  N  C  C  C  C :   I  I  T  A  *  G  T  G  *  V  R  R  K  T  L  L  Y  S  *  M  Y  Q  L  M  E  M  L  Q  K  K  L  L  L  S :   S  L  Q  I  L  F  Q  E  L  Q  K  I  S  G  R  S  A  Q  :  V  R  R  E  L  E  Y  L  L  E  N  L  C  T  T  K  D  A  Y  F  T  V  *  *  K  G  L  W  H  K :   V  V  I  S  P  K  G  M  :  A  L  V  E  R  V  Y  M  E  G  N  F  Q  :  M  R  T  S  K  L  P  T  R  R  L  V  F  S  Q  W  Q  I  V  V  L  I  Q  M  D  P  S  S  S  L  Y  L  R  E  L  P  I  S  T   : G  S  M  L  F  L  E  K  L  *  R  E  W  I  *  *  R  K  L  N  S  W  E  Q  T  V  G  S  H  L  G  L  *  K  L  W  I  V  A  N  C  L  R  R  K  V  M  I  H  P  K  Q  R  K  :  G  K  I  R  S  P  R  E  L  F  P  L  M  M  I  Q  T  V  K  K  R  G  K  A  N  H  P  P  I  E  G  K  R  K  R  G  D  T  L  H  L  I  L  T  V  L  R  Q  I  L  I  P  L  Q  T  L  I  Q  I  L  S  W  T  P  I  L  L  V  L  Q  V  M  K  G  V  R  R  G  R  G  Q  L  R  K  K  G  V  D  M  G  R  K  K  V  E  K  A  R  A  E  E  L  I  E  I  K  D  R  D  A  S   : G  A  L  R  V  L  V  T  Q  T  V  R  A  *  A  A  A  A  A  V  I  A  L  M  M  K  M  T  G  Q  I  I  L  H  E  K  :  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R  V  K  C  L  R  T  L  S  F  Q  I  M  V  M  V  E  M  Y  K  T  T  G  L  S  P  Q  I  I  N  L  I  I  R  A  D  P   : G  A  Q  H  Q  V  L  R  G  S  Q  D  R  A  A  G  A  V  E  V  *  A  Q  K  K  Y  L  V  D  L  V  K  M  V  Q  V  F  Q  L  N  Q  R  R  E  V  F  Q  K  V  L  L  Q  K  L  L  S  H  L  A  L  V  L  S  G  I  Y  P  E  I  I  L  Q  M  E  L  Q  N  E  S  V  K  V  V  A  S  L  I  V  I  H  L  Q  D  A  I  A  P  H  L  L  N  V  H  L  T  G  L  I  T  R  V  G  E  T  F  R  G  I  V  I   : G  T  Q  A  I  E  A  I  L  V  A  L  H  R  Y  S  T  D  G  H  Q  E  A  E  V  P  P   : D  T  S  A  G  V  E  V  G  V  F  L  A  A  L  G  V  R  V  V  D  V  G  A  L  H  A  V  L  P  L  E  K  S  G  S  Q  S  V  T  D  *  S  L  V  L  G  L  V  *  M  I  S  I  L  F  Q  L  G  G  Q  P  Q  D  L  E  A  A  T  L  L  L  L  D  P  L  L  L  L  Q  G  S  T  V  G  K  *  D  P  H  H  L  I  V  R  D  Q  P  P  H  L  D  R  G  V  *  S  H  M  R  I  S  V  P  V  G  Q  T  N  L  C  T  L  H  A  H  I  *  V  T  K  F  A  E  N  F  W  P  R  F  K  P  C  S  I  R  C  S  L  S  W  D  F  Q  L  N  F  I  I  L  C  F  S  K  L  A  V  R  H  *  M  F  Y  L  W  K  K  G  L  I  *  P  R  T  I  K   </first_frame>
            <second_frame>  V  F  I  T  S  I  A  P  P  R  I  K  N  G  G  F  S  L  L  S  *  F  T  V  L  W  N  V  F  V  T  L  G  S  T  Q  I  A  V  V   : A  S  L  R  P  E  V  Q  D  E  *  E  E  K  P  S  C  I  L  R  C  I  S  *  W  R  C  C  R  K  N  C  Y  *   : A  L  C  R  Y  C  S  K  N  C  R  K  F  P  V  A  L  H  R :   *  E  G  S  W  S  I  Y  W  K  T  S  A  L  Q  R  M  L  I  S  P  C  N  K  R  V  Y  G  T   : R  W  *  F  L  Q  R  E  W :   H  W  W  R  E  Y  I  W  R  E  I  S  R :   *  E  L  Q  S  C  P  R  G  G  W  S  S  L  N  G  K  *  W  S  *  Y  K  W  I  P  V  L  H  Y  I  *  E  N  S  P  S  R  R  :  E  A  C  C  F  W  K  S  C  K  G  N  G  F  S  E  E  N  *  T  A  G  N  R  Q  W  E  A  I  W  A  C  E  N  C  G  L  W  R  T  V  *  E  E  K  *  *  Y  T  Q  S  R  E  R :   E  K  *  E  V  R  E  S  S  F  L  *  *  *  F  R  Q  S  R  K  G  E  K  Q  I  I  H  Q  *  K  E  K  E  K  E  E  I  L  F  I  *  F  L  Q  F  *  D  R  Y  *  F  L  F  R  L  *  F  R  F  *  A  G  L  L  F  F  *  F  F  R  *  *  K  A  *  E  E  E  E  V  N  *  E  R  K  E  S  T  W  E  E  K  R  *  K  K  H  E  Q  K  S  *  S  K  *  K  I  E  T  Q  V  :  E  L  *  E  F  *  *  H  R  Q  S  E  H  E  Q  Q  Q  Q  R  *  *  L  *  *  *  K  *  Q  A  K  *  F  C  T  K  R :   F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  *  S  V  *  E  R  *  A  S  K  *  W  S  W  W  R  C  T  K  R  Q  D  S  L  H  K  S  S  I  *  *  F  E  Q  I  Q  :  E  H  N  T  K  S  *  G  E  A  K  T  E  R  Q  E  Q  S  K  Y  E  P  R  K  S  T  W  *  T  W  S  K  W  C  K  S  S  N  *  I  K  G  E  K  S  F  K  K  S  S  S  K  S  Y  S  A  I  S  L  *  S  C  Q  G  F  I  Q  K  S  F  S  R  W  N  F  K  T  S  P  *  R  S  W  L  H  *  S  L  F  I  C  K  T  L  S  H  P  I  S  *  T  F  I  L  Q  A  L  L  P  G  W  E  K  L  S  G  E  S  *  *  :  V  L  K  L  *  K  L  F  W  S  L  S  T  G  T  V  Q  T  V  T  K  R  Q  K  S  P  Q  :  I  P  A  Q  E  S  K  *  E  C  F  S  Q  P  *  A  *  E  S  S  M  *  E  P  F  T  Q  S  F  P  *  R  K  A  A  A  N  Q  *  Q  I  E  V  S  S  W  A  S  C  R  *  S  A  F  Y  S  N  *  E  V  S  L  K  I  *  K  P  R  L  Y  Y  S  S  I  P  F  C  C  S  K  E  A  Q  *  E  S  R  I  R  I  T  *  *  F  E  I  N  L  P  T  S  T  E  G  S  S  L  I  *  G  Y  Q  S  L  W  D  K  L  I  S  V  P  S  M  L  I  Y  E  *  L  N  L  Q  R  T  F  G  L  G  L  N  L  V  P  S  D  V  R  L  A  G  I  S  N  S  I  L  S  F  C  V  S  V  N  *  Q  F  D  I  E  C  F  T  Y  G  K  R  V  S  F  S  L  V  L  *  K  </second_frame>
            <third_frame>   F  S  S  L  P  S  R  L  Q  E  *  K  M  E  A  S  L  C  *  A  N  S  Q  F  C  G  T  S  S  S  L  W  A  L  P  K  L  L  L  L  :  H  H  Y  G  L  R  Y  R  M  S  K  K  K  N  P  L  V  F  L  D  V  S  V  D  G  D  A  A  E  K  I  V  I  E  :  L  F  A  D  T  V  P  R  T  A  E  N  F  R  S  L  C  T   : G  E  K  G  V  G  V  S  T  G  K  P  L  H  Y  K  G  C  L  F  H  R  V  I  K  G  F  M  A  Q  :  G  G  D  F  S  K  G  N   : G  T  G  G  E  S  I  Y  G  G  K  F  P   : D  E  N  F  K  V  A  H  A  E  A  G  L  L  S  M  A  N  S  G  P  N  T  N  G  S  Q  F  F  I  I  F  K  R  T  P  H  L  D  G :   K  H  V  V  F  G  K  V  V  K  G  M  D  L  V  K  K  I  E  Q  L  G  T  D  S  G  K  P  S  G  L  V  K  I  V  D  C  G  E  L  S  E  K  K  S  N  D  T  P  K  A  E  K   : G  K  N  K  K  S  A  R  A  L  S  S  D  D  D  S  D  S  Q  E  K  G  K  S  K  S  S  T  N  R  R  K  K  K  K  R  R  Y  S  S  S  D  S  Y  S  S  E  T  D  T  D  S  S  S  D  S  D  S  D  S  K  L  D  S  Y  S  S  S  S  S  G  D  E  R  R  K  K  R  K  R  S  T  K  K  E  R  S  R  H  G  K  K  K  G  R  K  S  T  S  R  R  V  D  R  N  K  R  S  R  R  K  W :   S  S  E  S  S  S  D  T  D  S  Q  S  M  S  S  S  S  S  G  D  S  S  D  D  E  N  D  R  P  N  N  S  A  R  K   : G  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G  E  V  S  K  N  A  K  L  P  N  N  G  H  G  G  D  V  Q  N  D  R  T  L  S  T  N  H  Q  S  D  N  S  S  R  S  R :   S  T  T  P  S  P  K  G  K  P  R  P  S  G  R  S  S  R  S  M  S  P  E  K  V  P  G  R  L  G  Q  N  G  A  S  L  P  I  E  S  K  E  R  S  L  S  K  S  P  P  P  K  A  T  Q  P  S  R  S  S  P  V  R  D  L  S  R  N  H  S  P  D  G  T  S  K  R  V  R  K  G  R  G  F  T  D  R  Y  S  F  A  R  R  Y  R  T  P  S  P  E  R  S  S  Y  R  P  Y  Y  Q  G  G  R  N  F  Q  G  N  R  D  R :   Y  S  S  Y  R  S  Y  S  G  R  S  P  Q  V  Q  Y  R  R  S  P  R  G  R  S  P  P  R :   Y  Q  R  R  S  R  S  R  S  V  S  R  S  P  R  R  E  S  R  R  C  R  S  P  S  R  S  P  S  P  R  E  K  R  Q  P  I  S  D  R  L  K  S  R  L  G  P  R  V  D  D  Q  H  S  I  P  T  R  R  S  A  S  R  S  R  S  R  D  S  T  T  P  R  S  P  S  A  A  P  R  K  H  S  R  K  V  G  S  A  S  P  N  S  S  R  S  T  S  P  P  R  P  R  G  L  V  S  Y  E  D  I  S  P  C  G  T  N  *  S  L  Y  P  P  C  S  Y  M  S  D  *  I  C  R  E  L  L  A  *  V  *  T  L  F  H  Q  M  F  A  *  L  G  F  P  T  Q  F  Y  H  F  V  F  Q  *  T  S  S  S  T  L  N  V  L  L  M  E  K  G  S  H  L  A  S  Y  Y  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34724" stop="34786"/>
                    <exon start="37012" stop="37113"/>
                    <exon start="37259" stop="37313"/>
                    <exon start="38826" stop="38914"/>
                    <exon start="39481" stop="39505"/>
                    <exon start="39612" stop="39650"/>
                    <exon start="39731" stop="39848"/>
                    <exon start="40029" stop="40189"/>
                    <exon start="40306" stop="40639"/>
                    <exon start="40727" stop="40833"/>
                    <exon start="40920" stop="41100"/>
                    <exon start="41214" stop="41573"/>
                    <exon start="41656" stop="41736"/>
                    <exon start="41932" stop="42286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2067</number_coding_nucleotides>
                  <number_encoded_amino_acids>689</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSQFCGTSSSLWALPKLLLLHHYGLRYRMSKKKNPLVFLDVSVDGDAAEKIVIELFADTVPRTAENFRSLCTGEKGVGVSTGKPLHYKGCLFHRVIKGFMAQGGDFSKGNGTGGESIYGGKFPDENFKVAHAEAGLLSMANSGPNTNGSQFFIIFKRTPHLDGKHVVFGKVVKGMDLVKKIEQLGTDSGKPSGLVKIVDCGELSEKKSNDTPKAEKGKNKKSARALSSDDDSDSQEKGKSKSSTNRRKKKKRRYSSSDSYSSETDTDSSSDSDSDSKLDSYSSSSSGDERRKKRKRSTKKERSRHGKKKGRKSTSRRVDRNKRSRRKWSSESSSDTDSQSMSSSSSGDSSDDENDRPNNSARKGLVKKLSNPVKGQAVLKQQQNLEEGEVSKNAKLPNNGHGGDVQNDRTLSTNHQSDNSSRSRSTTPSPKGKPRPSGRSSRSMSPEKVPGRLGQNGASLPIESKERSLSKSPPPKATQPSRSSPVRDLSRNHSPDGTSKRVRKGRGFTDRYSFARRYRTPSPERSSYRPYYQGGRNFQGNRDRYSSYRSYSGRSPQVQYRRSPRGRSPPRYQRRSRSRSVSRSPRRESRRCRSPSRSPSPREKRQPISDRLKSRLGPRVDDQHSIPTRRSASRSRSRDSTTPRSPSAAPRKHSRKVGSASPNSSRSTSPPRPRGLVSYEDISPCGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34665" e_stop="34786"/>
            <exon e_start="37012" e_stop="37113"/>
            <exon e_start="37259" e_stop="37313"/>
            <exon e_start="38826" e_stop="38914"/>
            <exon e_start="39481" e_stop="39505"/>
            <exon e_start="39612" e_stop="39650"/>
            <exon e_start="39731" e_stop="39848"/>
            <exon e_start="40029" e_stop="40189"/>
            <exon e_start="40306" e_stop="40639"/>
            <exon e_start="40727" e_stop="40835"/>
            <exon e_start="40920" e_stop="41100"/>
            <exon e_start="41214" e_stop="41573"/>
            <exon e_start="41656" e_stop="41736"/>
            <exon e_start="41932" e_stop="42490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="0.926"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.862"/>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="0.939"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="34665" e_stop="34786" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="37012" e_stop="37113" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37259" e_stop="37313" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38826" e_stop="38914" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.936">
            <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39481" e_stop="39505" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.974">
            <gDNA_intron_boundary i_start="39506" i_stop="39611" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39612" e_stop="39650" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.824" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39731" e_stop="39848" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.858">
            <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40029" e_stop="40189" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.839" acc_prob="0.944">
            <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="40306" e_stop="40639" e_length="334"/>
          </exon>
          <intron i_serial="9" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.862">
            <gDNA_exon_boundary e_start="40727" e_stop="40835" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40836" i_stop="40919" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="0.939">
            <gDNA_exon_boundary e_start="40920" e_stop="41100" e_length="181"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41214" e_stop="41573" e_length="360"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41656" e_stop="41736" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.890" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="42490" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34665" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34677" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39848"/>
              <exon start="40029" stop="40158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34677" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39848"/>
              <exon start="40029" stop="40153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34687" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34700" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34700" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39505"/>
              <exon start="39612" stop="39650"/>
              <exon start="39731" stop="39823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39760" stop="39848"/>
              <exon start="40029" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395700" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40181" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40835"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41060" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41321" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41450" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426197" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41461" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41964" stop="42477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCATCACTTCCATCGCGCCTCCAAGAATAAAAAATGGAGGCTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTG : CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG : CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG : GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA : GGTGGTGATTTCTCCAAAGGGAATG : GCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG : ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG : GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG : GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTG : GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAGGT : GTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG : GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG : GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG : ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</gDNA_template>
            <first_frame> S  F  H  H  F  H  R  A  S  K  N  K  K  W  R  L  L  F  V  K  L  I  H  S  F  V  E  R  L  R  H  F  G  L  Y  P  N  C  C  C  C :   I  I  T  A  *  G  T  G  *  V  R  R  K  T  L  L  Y  S  *  M  Y  Q  L  M  E  M  L  Q  K  K  L  L  L  S :   S  L  Q  I  L  F  Q  E  L  Q  K  I  S  G  R  S  A  Q  :  V  R  R  E  L  E  Y  L  L  E  N  L  C  T  T  K  D  A  Y  F  T  V  *  *  K  G  L  W  H  K :   V  V  I  S  P  K  G  M  :  A  L  V  E  R  V  Y  M  E  G  N  F  Q  :  M  R  T  S  K  L  P  T  R  R  L  V  F  S  Q  W  Q  I  V  V  L  I  Q  M  D  P  S  S  S  L  Y  L  R  E  L  P  I  S  T   : G  S  M  L  F  L  E  K  L  *  R  E  W  I  *  *  R  K  L  N  S  W  E  Q  T  V  G  S  H  L  G  L  *  K  L  W  I  V  A  N  C  L  R  R  K  V  M  I  H  P  K  Q  R  K  :  G  K  I  R  S  P  R  E  L  F  P  L  M  M  I  Q  T  V  K  K  R  G  K  A  N  H  P  P  I  E  G  K  R  K  R  G  D  T  L  H  L  I  L  T  V  L  R  Q  I  L  I  P  L  Q  T  L  I  Q  I  L  S  W  T  P  I  L  L  V  L  Q  V  M  K  G  V  R  R  G  R  G  Q  L  R  K  K  G  V  D  M  G  R  K  K  V  E  K  A  R  A  E  E  L  I  E  I  K  D  R  D  A  S   : G  A  L  R  V  L  V  T  Q  T  V  R  A  *  A  A  A  A  A  V  I  A  L  M  M  K  M  T  G  Q  I  I  L  H  E  K  V :   F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  *  S  V  *  E  R  *  A  S  K  *  W  S  W  W  R  C  T  K  R  Q  D  S  L  H  K  S  S  I  *  *  F  E  Q  I  Q  :  E  H  N  T  K  S  *  G  E  A  K  T  E  R  Q  E  Q  S  K  Y  E  P  R  K  S  T  W  *  T  W  S  K  W  C  K  S  S  N  *  I  K  G  E  K  S  F  K  K  S  S  S  K  S  Y  S  A  I  S  L  *  S  C  Q  G  F  I  Q  K  S  F  S  R  W  N  F  K  T  S  P  *  R  S  W  L  H  *  S  L  F  I  C  K  T  L  S  H  P  I  S  *  T  F  I  L  Q  A  L  L  P  G  W  E  K  L  S  G  E  S  *  *  :  V  L  K  L  *  K  L  F  W  S  L  S  T  G  T  V  Q  T  V  T  K  R  Q  K  S  P  Q  :  I  P  A  Q  E  S  K  *  E  C  F  S  Q  P  *  A  *  E  S  S  M  *  E  P  F  T  Q  S  F  P  *  R  K  A  A  A  N  Q  *  Q  I  E  V  S  S  W  A  S  C  R  *  S  A  F  Y  S  N  *  E  V  S  L  K  I  *  K  P  R  L  Y  Y  S  S  I  P  F  C  C  S  K  E  A  Q  *  E  S  R  I  R  I  T  *  *  F  E  I  N  L  P  T  S  T  E  G  S  S  L  I  *  G  Y  Q  S  L  W  D  K  L  I  S  V  P  S  M  L  I  Y  E  *  L  N  L  Q  R  T  F  G  L  G  L  N  L  V  P  S  D  V  R  L  A  G  I  S  N  S  I  L  S  F  C  V  S  V  N  *  Q  F  D  I  E  C  F  T  Y  G  K  R  V  S  F  S  L  V  L  *  K  </first_frame>
            <second_frame>  V  F  I  T  S  I  A  P  P  R  I  K  N  G  G  F  S  L  L  S  *  F  T  V  L  W  N  V  F  V  T  L  G  S  T  Q  I  A  V  V   : A  S  L  R  P  E  V  Q  D  E  *  E  E  K  P  S  C  I  L  R  C  I  S  *  W  R  C  C  R  K  N  C  Y  *   : A  L  C  R  Y  C  S  K  N  C  R  K  F  P  V  A  L  H  R :   *  E  G  S  W  S  I  Y  W  K  T  S  A  L  Q  R  M  L  I  S  P  C  N  K  R  V  Y  G  T   : R  W  *  F  L  Q  R  E  W :   H  W  W  R  E  Y  I  W  R  E  I  S  R :   *  E  L  Q  S  C  P  R  G  G  W  S  S  L  N  G  K  *  W  S  *  Y  K  W  I  P  V  L  H  Y  I  *  E  N  S  P  S  R  R  :  E  A  C  C  F  W  K  S  C  K  G  N  G  F  S  E  E  N  *  T  A  G  N  R  Q  W  E  A  I  W  A  C  E  N  C  G  L  W  R  T  V  *  E  E  K  *  *  Y  T  Q  S  R  E  R :   E  K  *  E  V  R  E  S  S  F  L  *  *  *  F  R  Q  S  R  K  G  E  K  Q  I  I  H  Q  *  K  E  K  E  K  E  E  I  L  F  I  *  F  L  Q  F  *  D  R  Y  *  F  L  F  R  L  *  F  R  F  *  A  G  L  L  F  F  *  F  F  R  *  *  K  A  *  E  E  E  E  V  N  *  E  R  K  E  S  T  W  E  E  K  R  *  K  K  H  E  Q  K  S  *  S  K  *  K  I  E  T  Q  V  :  E  L  *  E  F  *  *  H  R  Q  S  E  H  E  Q  Q  Q  Q  R  *  *  L  *  *  *  K  *  Q  A  K  *  F  C  T  K  R   : C  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G  E  V  S  K  N  A  K  L  P  N  N  G  H  G  G  D  V  Q  N  D  R  T  L  S  T  N  H  Q  S  D  N  S  S  R  S  R :   S  T  T  P  S  P  K  G  K  P  R  P  S  G  R  S  S  R  S  M  S  P  E  K  V  P  G  R  L  G  Q  N  G  A  S  L  P  I  E  S  K  E  R  S  L  S  K  S  P  P  P  K  A  T  Q  P  S  R  S  S  P  V  R  D  L  S  R  N  H  S  P  D  G  T  S  K  R  V  R  K  G  R  G  F  T  D  R  Y  S  F  A  R  R  Y  R  T  P  S  P  E  R  S  S  Y  R  P  Y  Y  Q  G  G  R  N  F  Q  G  N  R  D  R :   Y  S  S  Y  R  S  Y  S  G  R  S  P  Q  V  Q  Y  R  R  S  P  R  G  R  S  P  P  R :   Y  Q  R  R  S  R  S  R  S  V  S  R  S  P  R  R  E  S  R  R  C  R  S  P  S  R  S  P  S  P  R  E  K  R  Q  P  I  S  D  R  L  K  S  R  L  G  P  R  V  D  D  Q  H  S  I  P  T  R  R  S  A  S  R  S  R  S  R  D  S  T  T  P  R  S  P  S  A  A  P  R  K  H  S  R  K  V  G  S  A  S  P  N  S  S  R  S  T  S  P  P  R  P  R  G  L  V  S  Y  E  D  I  S  P  C  G  T  N  *  S  L  Y  P  P  C  S  Y  M  S  D  *  I  C  R  E  L  L  A  *  V  *  T  L  F  H  Q  M  F  A  *  L  G  F  P  T  Q  F  Y  H  F  V  F  Q  *  T  S  S  S  T  L  N  V  L  L  M  E  K  G  S  H  L  A  S  Y  Y  K  K </second_frame>
            <third_frame>   F  S  S  L  P  S  R  L  Q  E  *  K  M  E  A  S  L  C  *  A  N  S  Q  F  C  G  T  S  S  S  L  W  A  L  P  K  L  L  L  L  :  H  H  Y  G  L  R  Y  R  M  S  K  K  K  N  P  L  V  F  L  D  V  S  V  D  G  D  A  A  E  K  I  V  I  E  :  L  F  A  D  T  V  P  R  T  A  E  N  F  R  S  L  C  T   : G  E  K  G  V  G  V  S  T  G  K  P  L  H  Y  K  G  C  L  F  H  R  V  I  K  G  F  M  A  Q  :  G  G  D  F  S  K  G  N   : G  T  G  G  E  S  I  Y  G  G  K  F  P   : D  E  N  F  K  V  A  H  A  E  A  G  L  L  S  M  A  N  S  G  P  N  T  N  G  S  Q  F  F  I  I  F  K  R  T  P  H  L  D  G :   K  H  V  V  F  G  K  V  V  K  G  M  D  L  V  K  K  I  E  Q  L  G  T  D  S  G  K  P  S  G  L  V  K  I  V  D  C  G  E  L  S  E  K  K  S  N  D  T  P  K  A  E  K   : G  K  N  K  K  S  A  R  A  L  S  S  D  D  D  S  D  S  Q  E  K  G  K  S  K  S  S  T  N  R  R  K  K  K  K  R  R  Y  S  S  S  D  S  Y  S  S  E  T  D  T  D  S  S  S  D  S  D  S  D  S  K  L  D  S  Y  S  S  S  S  S  G  D  E  R  R  K  K  R  K  R  S  T  K  K  E  R  S  R  H  G  K  K  K  G  R  K  S  T  S  R  R  V  D  R  N  K  R  S  R  R  K  W :   S  S  E  S  S  S  D  T  D  S  Q  S  M  S  S  S  S  S  G  D  S  S  D  D  E  N  D  R  P  N  N  S  A  R  K  G  :  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R  V  K  C  L  R  T  L  S  F  Q  I  M  V  M  V  E  M  Y  K  T  T  G  L  S  P  Q  I  I  N  L  I  I  R  A  D  P   : G  A  Q  H  Q  V  L  R  G  S  Q  D  R  A  A  G  A  V  E  V  *  A  Q  K  K  Y  L  V  D  L  V  K  M  V  Q  V  F  Q  L  N  Q  R  R  E  V  F  Q  K  V  L  L  Q  K  L  L  S  H  L  A  L  V  L  S  G  I  Y  P  E  I  I  L  Q  M  E  L  Q  N  E  S  V  K  V  V  A  S  L  I  V  I  H  L  Q  D  A  I  A  P  H  L  L  N  V  H  L  T  G  L  I  T  R  V  G  E  T  F  R  G  I  V  I   : G  T  Q  A  I  E  A  I  L  V  A  L  H  R  Y  S  T  D  G  H  Q  E  A  E  V  P  P   : D  T  S  A  G  V  E  V  G  V  F  L  A  A  L  G  V  R  V  V  D  V  G  A  L  H  A  V  L  P  L  E  K  S  G  S  Q  S  V  T  D  *  S  L  V  L  G  L  V  *  M  I  S  I  L  F  Q  L  G  G  Q  P  Q  D  L  E  A  A  T  L  L  L  L  D  P  L  L  L  L  Q  G  S  T  V  G  K  *  D  P  H  H  L  I  V  R  D  Q  P  P  H  L  D  R  G  V  *  S  H  M  R  I  S  V  P  V  G  Q  T  N  L  C  T  L  H  A  H  I  *  V  T  K  F  A  E  N  F  W  P  R  F  K  P  C  S  I  R  C  S  L  S  W  D  F  Q  L  N  F  I  I  L  C  F  S  K  L  A  V  R  H  *  M  F  Y  L  W  K  K  G  L  I  *  P  R  T  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34724" stop="34786"/>
                    <exon start="37012" stop="37113"/>
                    <exon start="37259" stop="37313"/>
                    <exon start="38826" stop="38914"/>
                    <exon start="39481" stop="39505"/>
                    <exon start="39612" stop="39650"/>
                    <exon start="39731" stop="39848"/>
                    <exon start="40029" stop="40189"/>
                    <exon start="40306" stop="40639"/>
                    <exon start="40727" stop="40835"/>
                    <exon start="40920" stop="40928"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSQFCGTSSSLWALPKLLLLHHYGLRYRMSKKKNPLVFLDVSVDGDAAEKIVIELFADTVPRTAENFRSLCTGEKGVGVSTGKPLHYKGCLFHRVIKGFMAQGGDFSKGNGTGGESIYGGKFPDENFKVAHAEAGLLSMANSGPNTNGSQFFIIFKRTPHLDGKHVVFGKVVKGMDLVKKIEQLGTDSGKPSGLVKIVDCGELSEKKSNDTPKAEKGKNKKSARALSSDDDSDSQEKGKSKSSTNRRKKKKRRYSSSDSYSSETDTDSSSDSDSDSKLDSYSSSSSGDERRKKRKRSTKKERSRHGKKKGRKSTSRRVDRNKRSRRKWSSESSSDTDSQSMSSSSSGDSSDDENDRPNNSARKGVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40820" stop="40835"/>
                    <exon start="40920" stop="41100"/>
                    <exon start="41214" stop="41573"/>
                    <exon start="41656" stop="41736"/>
                    <exon start="41932" stop="42286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTKRCLVKKLSNPVKGQAVLKQQQNLEEGEVSKNAKLPNNGHGGDVQNDRTLSTNHQSDNSSRSRSTTPSPKGKPRPSGRSSRSMSPEKVPGRLGQNGASLPIESKERSLSKSPPPKATQPSRSSPVRDLSRNHSPDGTSKRVRKGRGFTDRYSFARRYRTPSPERSSYRPYYQGGRNFQGNRDRYSSYRSYSGRSPQVQYRRSPRGRSPPRYQRRSRSRSVSRSPRRESRRCRSPSRSPSPREKRQPISDRLKSRLGPRVDDQHSIPTRRSASRSRSRDSTTPRSPSAAPRKHSRKVGSASPNSSRSTSPPRPRGLVSYEDISPCGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34710" e_stop="34786"/>
            <exon e_start="37012" e_stop="37113"/>
            <exon e_start="37259" e_stop="37313"/>
            <exon e_start="38826" e_stop="38914"/>
            <exon e_start="39481" e_stop="39650"/>
            <exon e_start="39731" e_stop="39848"/>
            <exon e_start="40029" e_stop="40189"/>
            <exon e_start="40306" e_stop="40639"/>
            <exon e_start="40727" e_stop="40833"/>
            <exon e_start="40920" e_stop="41100"/>
            <exon e_start="41214" e_stop="41573"/>
            <exon e_start="41656" e_stop="41736"/>
            <exon e_start="41932" e_stop="42490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.824" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34710" e_stop="34786" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="34787" i_stop="37011" i_length="2225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37012" e_stop="37113" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37114" i_stop="37258" i_length="145"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37259" e_stop="37313" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37314" i_stop="38825" i_length="1512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38826" e_stop="38914" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.936">
            <gDNA_intron_boundary i_start="38915" i_stop="39480" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39481" e_stop="39650" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.824" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39651" i_stop="39730" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39731" e_stop="39848" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.858">
            <gDNA_intron_boundary i_start="39849" i_stop="40028" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40029" e_stop="40189" e_length="161"/>
          </exon>
          <intron i_serial="7" don_prob="0.839" acc_prob="0.944">
            <gDNA_intron_boundary i_start="40190" i_stop="40305" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="40306" e_stop="40639" e_length="334"/>
          </exon>
          <intron i_serial="8" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40640" i_stop="40726" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="40727" e_stop="40833" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40834" i_stop="40919" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="0.950">
            <gDNA_exon_boundary e_start="40920" e_stop="41100" e_length="181"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41214" e_stop="41573" e_length="360"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41656" e_stop="41736" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.890" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="42490" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34710" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39650"/>
              <exon start="39731" stop="39815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34711" stop="34786"/>
              <exon start="37012" stop="37113"/>
              <exon start="37259" stop="37313"/>
              <exon start="38826" stop="38914"/>
              <exon start="39481" stop="39650"/>
              <exon start="39731" stop="39806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38841" stop="38914"/>
              <exon start="39481" stop="39650"/>
              <exon start="39731" stop="39848"/>
              <exon start="40029" stop="40115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39760" stop="39848"/>
              <exon start="40029" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395700" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40181" stop="40189"/>
              <exon start="40306" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40615" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="40993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40632" stop="40639"/>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40727" stop="40833"/>
              <exon start="40920" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41060" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41321" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41450" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426197" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41461" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41964" stop="42477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCTTTGTTAAGCTAATTCACAGTTTTGTGGAACGTCTTCGTCACTTTGGGCTCTACCCAAATTGCTGTTGTTG : CATCATTACGGCCTGAGGTACAGGATGAGTAAGAAGAAAAACCCTCTTGTATTCTTAGATGTATCAGTTGATGGAGATGCTGCAGAAAAAATTGTTATTGAG : CTCTTTGCAGATACTGTTCCAAGAACTGCAGAAAATTTCCGGTCGCTCTGCACAG : GTGAGAAGGGAGTTGGAGTATCTACTGGAAAACCTCTGCACTACAAAGGATGCTTATTTCACCGTGTAATAAAAGGGTTTATGGCACAA : GGTGGTGATTTCTCCAAAGGGAATGGTATGTTTTTCTCCTTCTGGGCCCTGAACTGACAATTGGTGCAGAGGATCTTTAACTTCAACTTCTTGGCCAGACAAGTAAAGCACGAACTTTTAATGTATTGCAGGCACTGGTGGAGAGAGTATATATGGAGGGAAATTTCCAG : ATGAGAACTTCAAAGTTGCCCACGCGGAGGCTGGTCTTCTCTCAATGGCAAATAGTGGTCCTAATACAAATGGATCCCAGTTCTTCATTATATTTAAGAGAACTCCCCATCTCGACGG : GAAGCATGTTGTTTTTGGAAAAGTTGTAAAGGGAATGGATTTAGTGAAGAAAATTGAACAGCTGGGAACAGACAGTGGGAAGCCATCTGGGCTTGTGAAAATTGTGGATTGTGGCGAACTGTCTGAGAAGAAAAGTAATGATACACCCAAAGCAGAGAAAG : GGAAAAATAAGAAGTCCGCGAGAGCTCTTTCCTCTGATGATGATTCAGACAGTCAAGAAAAGGGGAAAAGCAAATCATCCACCAATAGAAGGAAAAAGAAAAAGAGGAGATACTCTTCATCTGATTCTTACAGTTCTGAGACAGATACTGATTCCTCTTCAGACTCTGATTCAGATTCTAAGCTGGACTCCTATTCTTCTAGTTCTTCAGGTGATGAAAGGCGTAAGAAGAGGAAGAGGTCAACTAAGAAAGAAAGGAGTCGACATGGGAAGAAAAAAGGTAGAAAAAGCACGAGCAGAAGAGTTGATCGAAATAAAAGATCGAGACGCAAGTG : GAGCTCTGAGAGTTCTAGTGACACAGACAGTCAGAGCATGAGCAGCAGCAGCAGCGGTGATAGCTCTGATGATGAAAATGACAGGCCAAATAATTCTGCACGAAAAG : GTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG : GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG : GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG : ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</gDNA_template>
            <first_frame> L  L  F  V  K  L  I  H  S  F  V  E  R  L  R  H  F  G  L  Y  P  N  C  C  C  C :   I  I  T  A  *  G  T  G  *  V  R  R  K  T  L  L  Y  S  *  M  Y  Q  L  M  E  M  L  Q  K  K  L  L  L  S :   S  L  Q  I  L  F  Q  E  L  Q  K  I  S  G  R  S  A  Q  :  V  R  R  E  L  E  Y  L  L  E  N  L  C  T  T  K  D  A  Y  F  T  V  *  *  K  G  L  W  H  K :   V  V  I  S  P  K  G  M  V  C  F  S  P  S  G  P  *  T  D  N  W  C  R  G  S  L  T  S  T  S  W  P  D  K  *  S  T  N  F  *  C  I  A  G  T  G  G  E  S  I  Y  G  G  K  F  P   : D  E  N  F  K  V  A  H  A  E  A  G  L  L  S  M  A  N  S  G  P  N  T  N  G  S  Q  F  F  I  I  F  K  R  T  P  H  L  D  G :   K  H  V  V  F  G  K  V  V  K  G  M  D  L  V  K  K  I  E  Q  L  G  T  D  S  G  K  P  S  G  L  V  K  I  V  D  C  G  E  L  S  E  K  K  S  N  D  T  P  K  A  E  K   : G  K  N  K  K  S  A  R  A  L  S  S  D  D  D  S  D  S  Q  E  K  G  K  S  K  S  S  T  N  R  R  K  K  K  K  R  R  Y  S  S  S  D  S  Y  S  S  E  T  D  T  D  S  S  S  D  S  D  S  D  S  K  L  D  S  Y  S  S  S  S  S  G  D  E  R  R  K  K  R  K  R  S  T  K  K  E  R  S  R  H  G  K  K  K  G  R  K  S  T  S  R  R  V  D  R  N  K  R  S  R  R  K  W :   S  S  E  S  S  S  D  T  D  S  Q  S  M  S  S  S  S  S  G  D  S  S  D  D  E  N  D  R  P  N  N  S  A  R  K   : G  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G  E  V  S  K  N  A  K  L  P  N  N  G  H  G  G  D  V  Q  N  D  R  T  L  S  T  N  H  Q  S  D  N  S  S  R  S  R :   S  T  T  P  S  P  K  G  K  P  R  P  S  G  R  S  S  R  S  M  S  P  E  K  V  P  G  R  L  G  Q  N  G  A  S  L  P  I  E  S  K  E  R  S  L  S  K  S  P  P  P  K  A  T  Q  P  S  R  S  S  P  V  R  D  L  S  R  N  H  S  P  D  G  T  S  K  R  V  R  K  G  R  G  F  T  D  R  Y  S  F  A  R  R  Y  R  T  P  S  P  E  R  S  S  Y  R  P  Y  Y  Q  G  G  R  N  F  Q  G  N  R  D  R :   Y  S  S  Y  R  S  Y  S  G  R  S  P  Q  V  Q  Y  R  R  S  P  R  G  R  S  P  P  R :   Y  Q  R  R  S  R  S  R  S  V  S  R  S  P  R  R  E  S  R  R  C  R  S  P  S  R  S  P  S  P  R  E  K  R  Q  P  I  S  D  R  L  K  S  R  L  G  P  R  V  D  D  Q  H  S  I  P  T  R  R  S  A  S  R  S  R  S  R  D  S  T  T  P  R  S  P  S  A  A  P  R  K  H  S  R  K  V  G  S  A  S  P  N  S  S  R  S  T  S  P  P  R  P  R  G  L  V  S  Y  E  D  I  S  P  C  G  T  N  *  S  L  Y  P  P  C  S  Y  M  S  D  *  I  C  R  E  L  L  A  *  V  *  T  L  F  H  Q  M  F  A  *  L  G  F  P  T  Q  F  Y  H  F  V  F  Q  *  T  S  S  S  T  L  N  V  L  L  M  E  K  G  S  H  L  A  S  Y  Y  K  K </first_frame>
            <second_frame>  F  S  L  L  S  *  F  T  V  L  W  N  V  F  V  T  L  G  S  T  Q  I  A  V  V   : A  S  L  R  P  E  V  Q  D  E  *  E  E  K  P  S  C  I  L  R  C  I  S  *  W  R  C  C  R  K  N  C  Y  *   : A  L  C  R  Y  C  S  K  N  C  R  K  F  P  V  A  L  H  R :   *  E  G  S  W  S  I  Y  W  K  T  S  A  L  Q  R  M  L  I  S  P  C  N  K  R  V  Y  G  T   : R  W  *  F  L  Q  R  E  W  Y  V  F  L  L  L  G  P  E  L  T  I  G  A  E  D  L  *  L  Q  L  L  G  Q  T  S  K  A  R  T  F  N  V  L  Q  A  L  V  E  R  V  Y  M  E  G  N  F  Q  :  M  R  T  S  K  L  P  T  R  R  L  V  F  S  Q  W  Q  I  V  V  L  I  Q  M  D  P  S  S  S  L  Y  L  R  E  L  P  I  S  T   : G  S  M  L  F  L  E  K  L  *  R  E  W  I  *  *  R  K  L  N  S  W  E  Q  T  V  G  S  H  L  G  L  *  K  L  W  I  V  A  N  C  L  R  R  K  V  M  I  H  P  K  Q  R  K  :  G  K  I  R  S  P  R  E  L  F  P  L  M  M  I  Q  T  V  K  K  R  G  K  A  N  H  P  P  I  E  G  K  R  K  R  G  D  T  L  H  L  I  L  T  V  L  R  Q  I  L  I  P  L  Q  T  L  I  Q  I  L  S  W  T  P  I  L  L  V  L  Q  V  M  K  G  V  R  R  G  R  G  Q  L  R  K  K  G  V  D  M  G  R  K  K  V  E  K  A  R  A  E  E  L  I  E  I  K  D  R  D  A  S   : G  A  L  R  V  L  V  T  Q  T  V  R  A  *  A  A  A  A  A  V  I  A  L  M  M  K  M  T  G  Q  I  I  L  H  E  K  :  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R  V  K  C  L  R  T  L  S  F  Q  I  M  V  M  V  E  M  Y  K  T  T  G  L  S  P  Q  I  I  N  L  I  I  R  A  D  P   : G  A  Q  H  Q  V  L  R  G  S  Q  D  R  A  A  G  A  V  E  V  *  A  Q  K  K  Y  L  V  D  L  V  K  M  V  Q  V  F  Q  L  N  Q  R  R  E  V  F  Q  K  V  L  L  Q  K  L  L  S  H  L  A  L  V  L  S  G  I  Y  P  E  I  I  L  Q  M  E  L  Q  N  E  S  V  K  V  V  A  S  L  I  V  I  H  L  Q  D  A  I  A  P  H  L  L  N  V  H  L  T  G  L  I  T  R  V  G  E  T  F  R  G  I  V  I   : G  T  Q  A  I  E  A  I  L  V  A  L  H  R  Y  S  T  D  G  H  Q  E  A  E  V  P  P   : D  T  S  A  G  V  E  V  G  V  F  L  A  A  L  G  V  R  V  V  D  V  G  A  L  H  A  V  L  P  L  E  K  S  G  S  Q  S  V  T  D  *  S  L  V  L  G  L  V  *  M  I  S  I  L  F  Q  L  G  G  Q  P  Q  D  L  E  A  A  T  L  L  L  L  D  P  L  L  L  L  Q  G  S  T  V  G  K  *  D  P  H  H  L  I  V  R  D  Q  P  P  H  L  D  R  G  V  *  S  H  M  R  I  S  V  P  V  G  Q  T  N  L  C  T  L  H  A  H  I  *  V  T  K  F  A  E  N  F  W  P  R  F  K  P  C  S  I  R  C  S  L  S  W  D  F  Q  L  N  F  I  I  L  C  F  S  K  L  A  V  R  H  *  M  F  Y  L  W  K  K  G  L  I  *  P  R  T  I  K   </second_frame>
            <third_frame>   S  L  C  *  A  N  S  Q  F  C  G  T  S  S  S  L  W  A  L  P  K  L  L  L  L  :  H  H  Y  G  L  R  Y  R  M  S  K  K  K  N  P  L  V  F  L  D  V  S  V  D  G  D  A  A  E  K  I  V  I  E  :  L  F  A  D  T  V  P  R  T  A  E  N  F  R  S  L  C  T   : G  E  K  G  V  G  V  S  T  G  K  P  L  H  Y  K  G  C  L  F  H  R  V  I  K  G  F  M  A  Q  :  G  G  D  F  S  K  G  N  G  M  F  F  S  F  W  A  L  N  *  Q  L  V  Q  R  I  F  N  F  N  F  L  A  R  Q  V  K  H  E  L  L  M  Y  C  R  H  W  W  R  E  Y  I  W  R  E  I  S  R :   *  E  L  Q  S  C  P  R  G  G  W  S  S  L  N  G  K  *  W  S  *  Y  K  W  I  P  V  L  H  Y  I  *  E  N  S  P  S  R  R  :  E  A  C  C  F  W  K  S  C  K  G  N  G  F  S  E  E  N  *  T  A  G  N  R  Q  W  E  A  I  W  A  C  E  N  C  G  L  W  R  T  V  *  E  E  K  *  *  Y  T  Q  S  R  E  R :   E  K  *  E  V  R  E  S  S  F  L  *  *  *  F  R  Q  S  R  K  G  E  K  Q  I  I  H  Q  *  K  E  K  E  K  E  E  I  L  F  I  *  F  L  Q  F  *  D  R  Y  *  F  L  F  R  L  *  F  R  F  *  A  G  L  L  F  F  *  F  F  R  *  *  K  A  *  E  E  E  E  V  N  *  E  R  K  E  S  T  W  E  E  K  R  *  K  K  H  E  Q  K  S  *  S  K  *  K  I  E  T  Q  V  :  E  L  *  E  F  *  *  H  R  Q  S  E  H  E  Q  Q  Q  Q  R  *  *  L  *  *  *  K  *  Q  A  K  *  F  C  T  K  R :   F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  *  S  V  *  E  R  *  A  S  K  *  W  S  W  W  R  C  T  K  R  Q  D  S  L  H  K  S  S  I  *  *  F  E  Q  I  Q  :  E  H  N  T  K  S  *  G  E  A  K  T  E  R  Q  E  Q  S  K  Y  E  P  R  K  S  T  W  *  T  W  S  K  W  C  K  S  S  N  *  I  K  G  E  K  S  F  K  K  S  S  S  K  S  Y  S  A  I  S  L  *  S  C  Q  G  F  I  Q  K  S  F  S  R  W  N  F  K  T  S  P  *  R  S  W  L  H  *  S  L  F  I  C  K  T  L  S  H  P  I  S  *  T  F  I  L  Q  A  L  L  P  G  W  E  K  L  S  G  E  S  *  *  :  V  L  K  L  *  K  L  F  W  S  L  S  T  G  T  V  Q  T  V  T  K  R  Q  K  S  P  Q  :  I  P  A  Q  E  S  K  *  E  C  F  S  Q  P  *  A  *  E  S  S  M  *  E  P  F  T  Q  S  F  P  *  R  K  A  A  A  N  Q  *  Q  I  E  V  S  S  W  A  S  C  R  *  S  A  F  Y  S  N  *  E  V  S  L  K  I  *  K  P  R  L  Y  Y  S  S  I  P  F  C  C  S  K  E  A  Q  *  E  S  R  I  R  I  T  *  *  F  E  I  N  L  P  T  S  T  E  G  S  S  L  I  *  G  Y  Q  S  L  W  D  K  L  I  S  V  P  S  M  L  I  Y  E  *  L  N  L  Q  R  T  F  G  L  G  L  N  L  V  P  S  D  V  R  L  A  G  I  S  N  S  I  L  S  F  C  V  S  V  N  *  Q  F  D  I  E  C  F  T  Y  G  K  R  V  S  F  S  L  V  L  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39602" stop="39650"/>
                    <exon start="39731" stop="39848"/>
                    <exon start="40029" stop="40189"/>
                    <exon start="40306" stop="40639"/>
                    <exon start="40727" stop="40833"/>
                    <exon start="40920" stop="41100"/>
                    <exon start="41214" stop="41573"/>
                    <exon start="41656" stop="41736"/>
                    <exon start="41932" stop="42286"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIAGTGGESIYGGKFPDENFKVAHAEAGLLSMANSGPNTNGSQFFIIFKRTPHLDGKHVVFGKVVKGMDLVKKIEQLGTDSGKPSGLVKIVDCGELSEKKSNDTPKAEKGKNKKSARALSSDDDSDSQEKGKSKSSTNRRKKKKRRYSSSDSYSSETDTDSSSDSDSDSKLDSYSSSSSGDERRKKRKRSTKKERSRHGKKKGRKSTSRRVDRNKRSRRKWSSESSSDTDSQSMSSSSSGDSSDDENDRPNNSARKGLVKKLSNPVKGQAVLKQQQNLEEGEVSKNAKLPNNGHGGDVQNDRTLSTNHQSDNSSRSRSTTPSPKGKPRPSGRSSRSMSPEKVPGRLGQNGASLPIESKERSLSKSPPPKATQPSRSSPVRDLSRNHSPDGTSKRVRKGRGFTDRYSFARRYRTPSPERSSYRPYYQGGRNFQGNRDRYSSYRSYSGRSPQVQYRRSPRGRSPPRYQRRSRSRSVSRSPRRESRRCRSPSRSPSPREKRQPISDRLKSRLGPRVDDQHSIPTRRSASRSRSRDSTTPRSPSAAPRKHSRKVGSASPNSSRSTSPPRPRGLVSYEDISPCGTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34724" stop="34786"/>
                    <exon start="37012" stop="37113"/>
                    <exon start="37259" stop="37313"/>
                    <exon start="38826" stop="38914"/>
                    <exon start="39481" stop="39537"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSQFCGTSSSLWALPKLLLLHHYGLRYRMSKKKNPLVFLDVSVDGDAAEKIVIELFADTVPRTAENFRSLCTGEKGVGVSTGKPLHYKGCLFHRVIKGFMAQGGDFSKGNGMFFSFWALN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40915" e_stop="41100"/>
            <exon e_start="41214" e_stop="41573"/>
            <exon e_start="41656" e_stop="41736"/>
            <exon e_start="41932" e_stop="42490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40915" e_stop="41100" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="41101" i_stop="41213" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41214" e_stop="41573" e_length="360"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41574" i_stop="41655" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41656" e_stop="41736" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.890" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41737" i_stop="41931" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="42490" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40915" stop="41100"/>
              <exon start="41214" stop="41524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41060" stop="41100"/>
              <exon start="41214" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41224" stop="41573"/>
              <exon start="41656" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41321" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41450" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426197" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41461" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41573"/>
              <exon start="41656" stop="41736"/>
              <exon start="41932" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41964" stop="42477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGGTTTGGTGAAGAAATTGTCAAACCCTGTCAAAGGACAAGCTGTTTTGAAGCAGCAACAGAATCTTGAAGAGGGTGAAGTGTCTAAGAACGCTAAGCTTCCAAATAATGGTCATGGTGGAGATGTACAAAACGACAGGACTCTCTCCACAAATCATCAATCTGATAATTCGAGCAGATCCAG : GAGCACAACACCAAGTCCTAAGGGGAAGCCAAGACCGAGCGGCAGGAGCAGTCGAAGTATGAGCCCAGAAAAAGTACCTGGTAGACTTGGTCAAAATGGTGCAAGTCTTCCAATTGAATCAAAGGAGAGAAGTCTTTCAAAAAGTCCTCCTCCAAAAGCTACTCAGCCATCTCGCTCTAGTCCTGTCAGGGATTTATCCAGAAATCATTCTCCAGATGGAACTTCAAAACGAGTCCGTAAAGGTCGTGGCTTCACTGATCGTTATTCATTTGCAAGACGCTATCGCACCCCATCTCCTGAACGTTCATCTTACAGGCCTTATTACCAGGGTGGGAGAAACTTTCAGGGGAATCGTGATAG : GTACTCAAGCTATAGAAGCTATTCTGGTCGCTCTCCACAGGTACAGTACAGACGGTCACCAAGAGGCAGAAGTCCCCCCAG : ATACCAGCGCAGGAGTCGAAGTAGGAGTGTTTCTCGCAGCCCTAGGCGTGAGAGTCGTCGATGTAGGAGCCCTTCACGCAGTCCTTCCCCTAGAGAAAAGCGGCAGCCAATCAGTGACAGATTGAAGTCTCGTCTTGGGCCTCGTGTAGATGATCAGCATTCTATTCCAACTAGGAGGTCAGCCTCAAGATCTAGAAGCCGCGACTCTACTACTCCTCGATCCCCTTCTGCTGCTCCAAGGAAGCACAGTAGGAAAGTAGGATCCGCATCACCTAATAGTTCGAGATCAACCTCCCCACCTCGACCGAGGGGTCTAGTCTCATATGAGGATATCAGTCCCTGTGGGACAAACTAATCTCTGTACCCTCCATGCTCATATATGAGTGACTAAATTTGCAGAGAACTTTTGGCCTAGGTTTAAACCTTGTTCCATCAGATGTTCGCTTAGCTGGGATTTCCAACTCAATTTTATCATTTTGTGTTTCAGTAAACTAGCAGTTCGACATTGAATGTTTTACTTATGGAAAAAGGGTCTCATTTAGCCTCGTACTATAAAAAA</gDNA_template>
            <first_frame> Y  R  F  G  E  E  I  V  K  P  C  Q  R  T  S  C  F  E  A  A  T  E  S  *  R  G  *  S  V  *  E  R  *  A  S  K  *  W  S  W  W  R  C  T  K  R  Q  D  S  L  H  K  S  S  I  *  *  F  E  Q  I  Q  :  E  H  N  T  K  S  *  G  E  A  K  T  E  R  Q  E  Q  S  K  Y  E  P  R  K  S  T  W  *  T  W  S  K  W  C  K  S  S  N  *  I  K  G  E  K  S  F  K  K  S  S  S  K  S  Y  S  A  I  S  L  *  S  C  Q  G  F  I  Q  K  S  F  S  R  W  N  F  K  T  S  P  *  R  S  W  L  H  *  S  L  F  I  C  K  T  L  S  H  P  I  S  *  T  F  I  L  Q  A  L  L  P  G  W  E  K  L  S  G  E  S  *  *  :  V  L  K  L  *  K  L  F  W  S  L  S  T  G  T  V  Q  T  V  T  K  R  Q  K  S  P  Q  :  I  P  A  Q  E  S  K  *  E  C  F  S  Q  P  *  A  *  E  S  S  M  *  E  P  F  T  Q  S  F  P  *  R  K  A  A  A  N  Q  *  Q  I  E  V  S  S  W  A  S  C  R  *  S  A  F  Y  S  N  *  E  V  S  L  K  I  *  K  P  R  L  Y  Y  S  S  I  P  F  C  C  S  K  E  A  Q  *  E  S  R  I  R  I  T  *  *  F  E  I  N  L  P  T  S  T  E  G  S  S  L  I  *  G  Y  Q  S  L  W  D  K  L  I  S  V  P  S  M  L  I  Y  E  *  L  N  L  Q  R  T  F  G  L  G  L  N  L  V  P  S  D  V  R  L  A  G  I  S  N  S  I  L  S  F  C  V  S  V  N  *  Q  F  D  I  E  C  F  T  Y  G  K  R  V  S  F  S  L  V  L  *  K  </first_frame>
            <second_frame>  T  G  L  V  K  K  L  S  N  P  V  K  G  Q  A  V  L  K  Q  Q  Q  N  L  E  E  G  E  V  S  K  N  A  K  L  P  N  N  G  H  G  G  D  V  Q  N  D  R  T  L  S  T  N  H  Q  S  D  N  S  S  R  S  R :   S  T  T  P  S  P  K  G  K  P  R  P  S  G  R  S  S  R  S  M  S  P  E  K  V  P  G  R  L  G  Q  N  G  A  S  L  P  I  E  S  K  E  R  S  L  S  K  S  P  P  P  K  A  T  Q  P  S  R  S  S  P  V  R  D  L  S  R  N  H  S  P  D  G  T  S  K  R  V  R  K  G  R  G  F  T  D  R  Y  S  F  A  R  R  Y  R  T  P  S  P  E  R  S  S  Y  R  P  Y  Y  Q  G  G  R  N  F  Q  G  N  R  D  R :   Y  S  S  Y  R  S  Y  S  G  R  S  P  Q  V  Q  Y  R  R  S  P  R  G  R  S  P  P  R :   Y  Q  R  R  S  R  S  R  S  V  S  R  S  P  R  R  E  S  R  R  C  R  S  P  S  R  S  P  S  P  R  E  K  R  Q  P  I  S  D  R  L  K  S  R  L  G  P  R  V  D  D  Q  H  S  I  P  T  R  R  S  A  S  R  S  R  S  R  D  S  T  T  P  R  S  P  S  A  A  P  R  K  H  S  R  K  V  G  S  A  S  P  N  S  S  R  S  T  S  P  P  R  P  R  G  L  V  S  Y  E  D  I  S  P  C  G  T  N  *  S  L  Y  P  P  C  S  Y  M  S  D  *  I  C  R  E  L  L  A  *  V  *  T  L  F  H  Q  M  F  A  *  L  G  F  P  T  Q  F  Y  H  F  V  F  Q  *  T  S  S  S  T  L  N  V  L  L  M  E  K  G  S  H  L  A  S  Y  Y  K  K </second_frame>
            <third_frame>   Q  V  W  *  R  N  C  Q  T  L  S  K  D  K  L  F  *  S  S  N  R  I  L  K  R  V  K  C  L  R  T  L  S  F  Q  I  M  V  M  V  E  M  Y  K  T  T  G  L  S  P  Q  I  I  N  L  I  I  R  A  D  P   : G  A  Q  H  Q  V  L  R  G  S  Q  D  R  A  A  G  A  V  E  V  *  A  Q  K  K  Y  L  V  D  L  V  K  M  V  Q  V  F  Q  L  N  Q  R  R  E  V  F  Q  K  V  L  L  Q  K  L  L  S  H  L  A  L  V  L  S  G  I  Y  P  E  I  I  L  Q  M  E  L  Q  N  E  S  V  K  V  V  A  S  L  I  V  I  H  L  Q  D  A  I  A  P  H  L  L  N  V  H  L  T  G  L  I  T  R  V  G  E  T  F  R  G  I  V  I   : G  T  Q  A  I  E  A  I  L  V  A  L  H  R  Y  S  T  D  G  H  Q  E  A  E  V  P  P   : D  T  S  A  G  V  E  V  G  V  F  L  A  A  L  G  V  R  V  V  D  V  G  A  L  H  A  V  L  P  L  E  K  S  G  S  Q  S  V  T  D  *  S  L  V  L  G  L  V  *  M  I  S  I  L  F  Q  L  G  G  Q  P  Q  D  L  E  A  A  T  L  L  L  L  D  P  L  L  L  L  Q  G  S  T  V  G  K  *  D  P  H  H  L  I  V  R  D  Q  P  P  H  L  D  R  G  V  *  S  H  M  R  I  S  V  P  V  G  Q  T  N  L  C  T  L  H  A  H  I  *  V  T  K  F  A  E  N  F  W  P  R  F  K  P  C  S  I  R  C  S  L  S  W  D  F  Q  L  N  F  I  I  L  C  F  S  K  L  A  V  R  H  *  M  F  Y  L  W  K  K  G  L  I  *  P  R  T  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40916" stop="41100"/>
                    <exon start="41214" stop="41573"/>
                    <exon start="41656" stop="41736"/>
                    <exon start="41932" stop="42286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGLVKKLSNPVKGQAVLKQQQNLEEGEVSKNAKLPNNGHGGDVQNDRTLSTNHQSDNSSRSRSTTPSPKGKPRPSGRSSRSMSPEKVPGRLGQNGASLPIESKERSLSKSPPPKATQPSRSSPVRDLSRNHSPDGTSKRVRKGRGFTDRYSFARRYRTPSPERSSYRPYYQGGRNFQGNRDRYSSYRSYSGRSPQVQYRRSPRGRSPPRYQRRSRSRSVSRSPRRESRRCRSPSRSPSPREKRQPISDRLKSRLGPRVDDQHSIPTRRSASRSRSRDSTTPRSPSAAPRKHSRKVGSASPNSSRSTSPPRPRGLVSYEDISPCGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="45720" PGL_stop="42145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45720" e_stop="45059"/>
            <exon e_start="44354" e_stop="44048"/>
            <exon e_start="43339" e_stop="42991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45720" e_stop="45059" e_length="662"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.941">
            <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44354" e_stop="44048" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43339" e_stop="42991" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45720" stop="45059"/>
              <exon start="44354" stop="44215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45715" stop="45059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45715" stop="45081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45714" stop="45059"/>
              <exon start="44354" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45710" stop="45059"/>
              <exon start="44354" stop="44199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45700" stop="45059"/>
              <exon start="44354" stop="44167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45700" stop="45279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45667" stop="45059"/>
              <exon start="44354" stop="44048"/>
              <exon start="43339" stop="42991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45661" stop="45190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45655" stop="45059"/>
              <exon start="44354" stop="44048"/>
              <exon start="43339" stop="43248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45655" stop="45059"/>
              <exon start="44354" stop="44296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45618" stop="45059"/>
              <exon start="44354" stop="44069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45613" stop="45059"/>
              <exon start="44354" stop="44083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45612" stop="45059"/>
              <exon start="44354" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45598" stop="45063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45592" stop="45059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45472" stop="45059"/>
              <exon start="44354" stop="44048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45301" stop="45059"/>
              <exon start="44354" stop="44293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45222" stop="45059"/>
              <exon start="44354" stop="44048"/>
              <exon start="43339" stop="43219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44331" stop="44048"/>
              <exon start="43339" stop="43021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44202" stop="44048"/>
              <exon start="43339" stop="42998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44119" stop="44048"/>
              <exon start="43339" stop="43028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44116" stop="44048"/>
              <exon start="43339" stop="43001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44102" stop="44048"/>
              <exon start="43339" stop="43006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282334" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43305" stop="43001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG : TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG : CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTTTTCGGATGACTTCAAACTTTTATTATCTGAA</gDNA_template>
            <first_frame> *  G  L  L  I  Y  D  F  N  *  A  F  S  I  V  L  *  P  L  K  L  R  F  *  Q  F  S  F  L  A  F  A  Q  L  I  M  A  N  S  I  F  I  S  G  T  Q  S  L  S  V  C  N  R  V  S  P  N  G  L  G  F  V  G  S  D  F  N  G  N  Q  F  S  K  L  G  L  S  R  T  S  Y  K  I  K  T  L  A  P  I  C  S  I  S  T  S  R  P  A  S  Q  P  R  F  I  Q  H  K  Q  E  A  F  W  F  Y  R  F  L  S  I  V  Y  D  H  V  I  N  P  G  H  W  T  E  D  M  R  D  D  A  L  E  P  A  D  L  N  D  R  N  L  T  V  V  D  V  G  G  G  T  G  F  T  T  L  G  I  V  E  H  V  D  A  K  N  V  T  I  L  D  Q  S  P  H  Q  L  A  K  A  K  E  K  E  P  L  K  E  C  K  I  I  E  G  D  A  E  D  L  P  F  S  T  D  Y  A  D  R  Y  V  S  A  G  S :   I  E  Y  W  P  D  P  Q  R  G  I  R  E  A  Y  R  V  L  K  P  G  G  K  A  C  L  I  G  P  V  H  P  T  F  W  L  S  R  F  F  A  D  V  W  M  L  F  P  K  E  E  E  Y  I  E  W  F  E  K  A  G  F  T  D  V  Q  L  K  K  I  G  P  K  W  Y  R  G  V  R  R  H  G  L  I  M  G  C  S  V  T  G  V  K  S  T  P  G  D  S  P  L  Q  :  L  G  P  K  A  E  D  V  T  K  P  V  N  P  F  V  F  M  L  R  F  L  L  G  A  T  A  A  T  Y  Y  V  L  V  P  I  Y  M  W  V  K  D  Q  V  V  P  E  G  E  P  L  *  E  T  K  L  L  N  T  T  G  *  S  F  *  L  A  Q  L  C  I  S  L  L  C  L  E  F  S  V  N  D  I  L  A  W  S  Q  L  K  L  I  *  F  S  K  C  R  L  Y  S  F  T  I  A  L  F  G  *  L  Q  T  F  I  I  *  </first_frame>
            <second_frame>  K  G  C  *  F  M  T  S  I  R  L  F  Q  *  F  C  S  H  *  S  F  D  F  D  N  F  H  F  L  H  L  L  N  *  S  W  Q  I  Q  Y  S  S  L  E  L  K  V  *  V  F  V  T  E  F  P  Q  M  G  *  A  L  L  A  Q  I  S  M  G  I  N  F  P  S  W  V  Y  Q  E  P  V  I  K  S  K  P  *  L  Q  F  A  V  F  Q  H  L  G  Q  L  H  S  Q  D  S  S  S  T  N  K  K  L  F  G  F  I  G  F  Y  L  L  C  M  I  M  L  L  I  L  V  I  G  L  K  I  *  G  M  M  H  L  N  Q  L  I  L  M  T  G  I  *  L  W  W  M  L  V  V  A  L  V  S  L  H  W  V  *  L  S  M  *  M  P  R  M  L  Q  F  L  T  N  L  L  I  N  *  L  R  L  R  K  R  S  L  *  K  N  A  R  *  L  R  V  M  L  R  I  F  H  S  Q  L  T  M  L  I  D  M  Y  L  L  E   : V  L  N  T  G  R  T  H  N  V  E  S  E  R  H  T  E  F  *  N  L  E  E  R  R  A  *  L  V  L  C  T  L  P  F  G  C  L  V  S  L  L  M  C  G  C  S  S  L  R  R  K  N  T  *  S  G  L  R  R  Q  D  S  R  T  S  N  *  R  R  S  A  Q  N  G  I  V  E  F  E  G  M  G  L  S  W  D  V  L  L  L  V  L  S  L  H  Q  G  I  H  H  C  S :   L  A  Q  K  Q  K  M  *  Q  N  L  *  I  H  L  S  L  C  C  G  F  F  W  V  Q  R  Q  Q  H  T  M  F  W  F  L  F  T  C  G  L  K  T  R  L  F  L  K  A  N  L  C  E  R  P  S  Y  L  I  L  L  A  D  P  S  S  *  R  S  C  A  S  H  F  Y  A  *  N  F  L  *  M  T  S  *  L  G  L  N  *  S  *  Y  N  F  P  N  V  D  S  T  P  L  L  *  L  F  S  D  D  F  K  L  L  L  S  E </second_frame>
            <third_frame>   R  V  V  D  L  *  L  Q  L  G  F  F  N  S  F  V  A  I  K  A  S  I  L  T  I  F  I  S  C  I  C  S  T  N  H  G  K  F  N  I  H  L  W  N  S  K  F  E  C  L  *  Q  S  F  P  K  W  V  R  L  C  W  L  R  F  Q  W  E  S  I  F  Q  A  G  F  I  K  N  Q  L  *  N  Q  N  P  S  S  N  L  Q  Y  F  N  I  *  A  S  F  T  A  K  I  H  P  A  Q  T  R  S  F  L  V  L  *  V  F  I  Y  C  V  *  S  C  Y  *  S  W  S  L  D  *  R  Y  E  G  *  C  T  *  T  S  *  S  *  *  Q  E  F  D  C  G  G  C  W  W  W  H  W  F  H  Y  I  G  Y  S  *  A  C  R  C  Q  E  C  Y  N  S  *  P  I  S  S  S  I  S  *  G  *  G  K  G  A  F  E  R  M  Q  D  N  *  G  *  C  *  G  S  S  I  L  N  *  L  C  *  *  I  C  I  C  W  K  :  Y  *  I  L  A  G  P  T  T  W  N  P  R  G  I  Q  S  S  E  T  W  R  K  G  V  L  N  W  S  C  A  P  Y  L  L  V  V  S  F  L  C  *  C  V  D  A  L  P  *  G  G  R  I  H  R  V  V  *  E  G  R  I  H  G  R  P  T  E  E  D  R  P  K  M  V  S  W  S  S  K  A  W  A  Y  H  G  M  F  C  Y  W  C  *  V  Y  T  R  G  F  T  T  A   : A  W  P  K  S  R  R  C  D  K  T  C  K  S  I  C  L  Y  A  A  V  S  S  G  C  N  G  S  N  I  L  C  F  G  S  Y  L  H  V  G  *  R  P  G  C  S  *  R  R  T  S  V  R  D  Q  A  T  *  Y  Y  W  L  I  L  L  V  S  A  V  V  H  L  T  F  M  P  R  I  F  C  E  *  H  L  S  L  V  S  T  K  V  D  I  I  F  Q  M  *  T  L  L  L  Y  Y  S  S  F  R  M  T  S  N  F  Y  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45648" stop="45059"/>
                    <exon start="44354" stop="44048"/>
                    <exon start="43339" stop="43184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSFLAFAQLIMANSIFISGTQSLSVCNRVSPNGLGFVGSDFNGNQFSKLGLSRTSYKIKTLAPICSISTSRPASQPRFIQHKQEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNLTVVDVGGGTGFTTLGIVEHVDAKNVTILDQSPHQLAKAKEKEPLKECKIIEGDAEDLPFSTDYADRYVSAGSIEYWPDPQRGIREAYRVLKPGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFEKAGFTDVQLKKIGPKWYRGVRRHGLIMGCSVTGVKSTPGDSPLQLGPKAEDVTKPVNPFVFMLRFLLGATAATYYVLVPIYMWVKDQVVPEGEPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45720" e_stop="45059"/>
            <exon e_start="44354" e_stop="44048"/>
            <exon e_start="43339" e_stop="43022"/>
            <exon e_start="42422" e_stop="42402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.370" e_score="0.881"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45720" e_stop="45059" e_length="662"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.941">
            <gDNA_intron_boundary i_start="45058" i_stop="44355" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44354" e_stop="44048" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44047" i_stop="43340" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="0.881">
            <gDNA_exon_boundary e_start="43339" e_stop="43022" e_length="318"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.370">
            <gDNA_intron_boundary i_start="43021" i_stop="42423" i_length="599"/>
          </intron>
          <exon e_serial="4" e_score="0.619">
            <gDNA_exon_boundary e_start="42422" e_stop="42402" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45720" stop="45059"/>
              <exon start="44354" stop="44215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45715" stop="45059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45715" stop="45081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45714" stop="45059"/>
              <exon start="44354" stop="44194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45710" stop="45059"/>
              <exon start="44354" stop="44199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45700" stop="45059"/>
              <exon start="44354" stop="44167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45700" stop="45279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45661" stop="45190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45655" stop="45059"/>
              <exon start="44354" stop="44048"/>
              <exon start="43339" stop="43248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45655" stop="45059"/>
              <exon start="44354" stop="44296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45618" stop="45059"/>
              <exon start="44354" stop="44069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45613" stop="45059"/>
              <exon start="44354" stop="44083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45612" stop="45059"/>
              <exon start="44354" stop="44322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45598" stop="45063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45592" stop="45059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45472" stop="45059"/>
              <exon start="44354" stop="44048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45301" stop="45059"/>
              <exon start="44354" stop="44293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45222" stop="45059"/>
              <exon start="44354" stop="44048"/>
              <exon start="43339" stop="43219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44333" stop="44048"/>
              <exon start="43339" stop="43022"/>
              <exon start="42422" stop="42402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44119" stop="44048"/>
              <exon start="43339" stop="43028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGGTTGTTGATTTATGACTTCAATTAGGCTTTTTCAATAGTTTTGTAGCCATTAAAGCTTCGATTTTGACAATTTTCATTTCTTGCATTTGCTCAACTAATCATGGCAAATTCAATATTCATCTCTGGAACTCAAAGTTTGAGTGTTTGTAACAGAGTTTCCCCAAATGGGTTAGGCTTTGTTGGCTCAGATTTCAATGGGAATCAATTTTCCAAGCTGGGTTTATCAAGAACCAGTTATAAAATCAAAACCCTAGCTCCAATTTGCAGTATTTCAACATCTAGGCCAGCTTCACAGCCAAGATTCATCCAGCACAAACAAGAAGCTTTTTGGTTTTATAGGTTTTTATCTATTGTGTATGATCATGTTATTAATCCTGGTCATTGGACTGAAGATATGAGGGATGATGCACTTGAACCAGCTGATCTTAATGACAGGAATTTGACTGTGGTGGATGTTGGTGGTGGCACTGGTTTCACTACATTGGGTATAGTTGAGCATGTAGATGCCAAGAATGTTACAATTCTTGACCAATCTCCTCATCAATTAGCTAAGGCTAAGGAAAAGGAGCCTTTGAAAGAATGCAAGATAATTGAGGGTGATGCTGAGGATCTTCCATTCTCAACTGACTATGCTGATAGATATGTATCTGCTGGAAG : TATTGAATACTGGCCGGACCCACAACGTGGAATCCGAGAGGCATACAGAGTTCTGAAACCTGGAGGAAAGGCGTGCTTAATTGGTCCTGTGCACCCTACCTTTTGGTTGTCTCGTTTCTTTGCTGATGTGTGGATGCTCTTCCCTAAGGAGGAAGAATACATAGAGTGGTTTGAGAAGGCAGGATTCACGGACGTCCAACTGAAGAAGATCGGCCCAAAATGGTATCGTGGAGTTCGAAGGCATGGGCTTATCATGGGATGTTCTGTTACTGGTGTTAAGTCTACACCAGGGGATTCACCACTGCAG : CTTGGCCCAAAAGCAGAAGATGTGACAAAACCTGTAAATCCATTTGTCTTTATGCTGCGGTTTCTTCTGGGTGCAACGGCAGCAACATACTATGTTTTGGTTCCTATTTACATGTGGGTTAAAGACCAGGTTGTTCCTGAAGGCGAACCTCTGTGAGAGACCAAGCTACTTAATACTACTGGCTGATCCTTCTAGTTAGCGCAGTTGTGCATCTCACTTTTATGCCTAGAATTTTCTGTGAATGACATCTTAGCTTGGTCTCAACTAAAGTTGATATAATTTTCCAAATGTAGACTCTACTCCTTTACTATAGCTCTT : TTTACTGAAACACAAAATGAT</gDNA_template>
            <first_frame> *  G  L  L  I  Y  D  F  N  *  A  F  S  I  V  L  *  P  L  K  L  R  F  *  Q  F  S  F  L  A  F  A  Q  L  I  M  A  N  S  I  F  I  S  G  T  Q  S  L  S  V  C  N  R  V  S  P  N  G  L  G  F  V  G  S  D  F  N  G  N  Q  F  S  K  L  G  L  S  R  T  S  Y  K  I  K  T  L  A  P  I  C  S  I  S  T  S  R  P  A  S  Q  P  R  F  I  Q  H  K  Q  E  A  F  W  F  Y  R  F  L  S  I  V  Y  D  H  V  I  N  P  G  H  W  T  E  D  M  R  D  D  A  L  E  P  A  D  L  N  D  R  N  L  T  V  V  D  V  G  G  G  T  G  F  T  T  L  G  I  V  E  H  V  D  A  K  N  V  T  I  L  D  Q  S  P  H  Q  L  A  K  A  K  E  K  E  P  L  K  E  C  K  I  I  E  G  D  A  E  D  L  P  F  S  T  D  Y  A  D  R  Y  V  S  A  G  S :   I  E  Y  W  P  D  P  Q  R  G  I  R  E  A  Y  R  V  L  K  P  G  G  K  A  C  L  I  G  P  V  H  P  T  F  W  L  S  R  F  F  A  D  V  W  M  L  F  P  K  E  E  E  Y  I  E  W  F  E  K  A  G  F  T  D  V  Q  L  K  K  I  G  P  K  W  Y  R  G  V  R  R  H  G  L  I  M  G  C  S  V  T  G  V  K  S  T  P  G  D  S  P  L  Q  :  L  G  P  K  A  E  D  V  T  K  P  V  N  P  F  V  F  M  L  R  F  L  L  G  A  T  A  A  T  Y  Y  V  L  V  P  I  Y  M  W  V  K  D  Q  V  V  P  E  G  E  P  L  *  E  T  K  L  L  N  T  T  G  *  S  F  *  L  A  Q  L  C  I  S  L  L  C  L  E  F  S  V  N  D  I  L  A  W  S  Q  L  K  L  I  *  F  S  K  C  R  L  Y  S  F  T  I  A  L  :  F  T  E  T  Q  N  D </first_frame>
            <second_frame>  K  G  C  *  F  M  T  S  I  R  L  F  Q  *  F  C  S  H  *  S  F  D  F  D  N  F  H  F  L  H  L  L  N  *  S  W  Q  I  Q  Y  S  S  L  E  L  K  V  *  V  F  V  T  E  F  P  Q  M  G  *  A  L  L  A  Q  I  S  M  G  I  N  F  P  S  W  V  Y  Q  E  P  V  I  K  S  K  P  *  L  Q  F  A  V  F  Q  H  L  G  Q  L  H  S  Q  D  S  S  S  T  N  K  K  L  F  G  F  I  G  F  Y  L  L  C  M  I  M  L  L  I  L  V  I  G  L  K  I  *  G  M  M  H  L  N  Q  L  I  L  M  T  G  I  *  L  W  W  M  L  V  V  A  L  V  S  L  H  W  V  *  L  S  M  *  M  P  R  M  L  Q  F  L  T  N  L  L  I  N  *  L  R  L  R  K  R  S  L  *  K  N  A  R  *  L  R  V  M  L  R  I  F  H  S  Q  L  T  M  L  I  D  M  Y  L  L  E   : V  L  N  T  G  R  T  H  N  V  E  S  E  R  H  T  E  F  *  N  L  E  E  R  R  A  *  L  V  L  C  T  L  P  F  G  C  L  V  S  L  L  M  C  G  C  S  S  L  R  R  K  N  T  *  S  G  L  R  R  Q  D  S  R  T  S  N  *  R  R  S  A  Q  N  G  I  V  E  F  E  G  M  G  L  S  W  D  V  L  L  L  V  L  S  L  H  Q  G  I  H  H  C  S :   L  A  Q  K  Q  K  M  *  Q  N  L  *  I  H  L  S  L  C  C  G  F  F  W  V  Q  R  Q  Q  H  T  M  F  W  F  L  F  T  C  G  L  K  T  R  L  F  L  K  A  N  L  C  E  R  P  S  Y  L  I  L  L  A  D  P  S  S  *  R  S  C  A  S  H  F  Y  A  *  N  F  L  *  M  T  S  *  L  G  L  N  *  S  *  Y  N  F  P  N  V  D  S  T  P  L  L  *  L  F :   L  L  K  H  K  M   </second_frame>
            <third_frame>   R  V  V  D  L  *  L  Q  L  G  F  F  N  S  F  V  A  I  K  A  S  I  L  T  I  F  I  S  C  I  C  S  T  N  H  G  K  F  N  I  H  L  W  N  S  K  F  E  C  L  *  Q  S  F  P  K  W  V  R  L  C  W  L  R  F  Q  W  E  S  I  F  Q  A  G  F  I  K  N  Q  L  *  N  Q  N  P  S  S  N  L  Q  Y  F  N  I  *  A  S  F  T  A  K  I  H  P  A  Q  T  R  S  F  L  V  L  *  V  F  I  Y  C  V  *  S  C  Y  *  S  W  S  L  D  *  R  Y  E  G  *  C  T  *  T  S  *  S  *  *  Q  E  F  D  C  G  G  C  W  W  W  H  W  F  H  Y  I  G  Y  S  *  A  C  R  C  Q  E  C  Y  N  S  *  P  I  S  S  S  I  S  *  G  *  G  K  G  A  F  E  R  M  Q  D  N  *  G  *  C  *  G  S  S  I  L  N  *  L  C  *  *  I  C  I  C  W  K  :  Y  *  I  L  A  G  P  T  T  W  N  P  R  G  I  Q  S  S  E  T  W  R  K  G  V  L  N  W  S  C  A  P  Y  L  L  V  V  S  F  L  C  *  C  V  D  A  L  P  *  G  G  R  I  H  R  V  V  *  E  G  R  I  H  G  R  P  T  E  E  D  R  P  K  M  V  S  W  S  S  K  A  W  A  Y  H  G  M  F  C  Y  W  C  *  V  Y  T  R  G  F  T  T  A   : A  W  P  K  S  R  R  C  D  K  T  C  K  S  I  C  L  Y  A  A  V  S  S  G  C  N  G  S  N  I  L  C  F  G  S  Y  L  H  V  G  *  R  P  G  C  S  *  R  R  T  S  V  R  D  Q  A  T  *  Y  Y  W  L  I  L  L  V  S  A  V  V  H  L  T  F  M  P  R  I  F  C  E  *  H  L  S  L  V  S  T  K  V  D  I  I  F  Q  M  *  T  L  L  L  Y  Y  S  S   : F  Y  *  N  T  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0194K19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45648" stop="45059"/>
                    <exon start="44354" stop="44048"/>
                    <exon start="43339" stop="43184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSFLAFAQLIMANSIFISGTQSLSVCNRVSPNGLGFVGSDFNGNQFSKLGLSRTSYKIKTLAPICSISTSRPASQPRFIQHKQEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNLTVVDVGGGTGFTTLGIVEHVDAKNVTILDQSPHQLAKAKEKEPLKECKIIEGDAEDLPFSTDYADRYVSAGSIEYWPDPQRGIREAYRVLKPGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFEKAGFTDVQLKKIGPKWYRGVRRHGLIMGCSVTGVKSTPGDSPLQLGPKAEDVTKPVNPFVFMLRFLLGATAATYYVLVPIYMWVKDQVVPEGEPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42479" e_stop="42145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="42479" e_stop="42145" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42479" stop="42145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGGCTAAATGAGACCCTTTTTCCATAAGTAAAACATTCAATGTCGAACTGCTAGTTTACTGAAACACAAAATGATAAAATTGAGTTGGAAATCCCAGCTAAGCGAACATCTGATGGAACAAGGTTTAAACCTAGGCCAAAAGTTCTCTGCAAATTTAGTCACTCATATATGAGCATGGAGGGTACAGAGATTAGTTTGTCCCACAGGGACTGATATCCTCATATGAGACTAGACCCCTCGGTCGAGGTGGGGAGGTTGATCTCGAACTATTAGGTGATGCGGATCCTACTTTCCTACTGTGCTTCCTTGGAGCAGCAGAAGGGGATCGAGGA</gDNA_template>
            <first_frame> T  R  L  N  E  T  L  F  P  *  V  K  H  S  M  S  N  C  *  F  T  E  T  Q  N  D  K  I  E  L  E  I  P  A  K  R  T  S  D  G  T  R  F  K  P  R  P  K  V  L  C  K  F  S  H  S  Y  M  S  M  E  G  T  E  I  S  L  S  H  R  D  *  Y  P  H  M  R  L  D  P  S  V  E  V  G  R  L  I  S  N  Y  *  V  M  R  I  L  L  S  Y  C  A  S  L  E  Q  Q  K  G  I  E   </first_frame>
            <second_frame>  R  G  *  M  R  P  F  F  H  K  *  N  I  Q  C  R  T  A  S  L  L  K  H  K  M  I  K  L  S  W  K  S  Q  L  S  E  H  L  M  E  Q  G  L  N  L  G  Q  K  F  S  A  N  L  V  T  H  I  *  A  W  R  V  Q  R  L  V  C  P  T  G  T  D  I  L  I  *  D  *  T  P  R  S  R  W  G  G  *  S  R  T  I  R  *  C  G  S  Y  F  P  T  V  L  P  W  S  S  R  R  G  S  R  </second_frame>
            <third_frame>   E  A  K  *  D  P  F  S  I  S  K  T  F  N  V  E  L  L  V  Y  *  N  T  K  *  *  N  *  V  G  N  P  S  *  A  N  I  *  W  N  K  V  *  T  *  A  K  S  S  L  Q  I  *  S  L  I  Y  E  H  G  G  Y  R  D  *  F  V  P  Q  G  L  I  S  S  Y  E  T  R  P  L  G  R  G  G  E  V  D  L  E  L  L  G  D  A  D  P  T  F  L  L  C  F  L  G  A  A  E  G  D  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0194K19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 112 chains have been computed
$ 
$ memory statistics:
$ 187336 bytes spliced alignments in total
$ 51 spliced alignments have been stored
$ 3673 bytes was the average size of a spliced alignment
$ 9256 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 4628 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 123 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:51:47
-->
