<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:36:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346269" ref_strand="-" ref_description="SGN-U346269        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G36790.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:15427269-15428945 REVERSE | Aliases: F13K3.19, F13K3_19 (evalue: 5e-57, score=218) genbank/nr: gi|46318043|gb|AAS87591.1| zeatin O-glucosyltransferase 2 [Arabidopsis thaliana] >gi|4415924|gb|AAD20155.1| putative glucosyl transferase [Arabidopsis thaliana] >gi|66774039|sp|Q9ZQ95|FOGT1_ARATH Flavonol-3-O-glycoside-7-O-glucosyltransferase 1 >gi|15228035|ref|NP_181217.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (evalue: 3e-55, score=218)">
      <seq>aaatggttaagagatgaaaattttcaagatagggttagaggaagagggatgattattagaggttgggccccacaagtcctaatattatctcatccttccgtcggaggatttttaacacactgtggatggaactcagcactagaagggatctctcgtggggtgccaaagactacttttcctatgtttgccgaacaattttacaatgagaagtttattgtaaatatcttgaagactggagttggagttggtgtttaagtgagtactacctcttggaatgaaaagaagagtggagtattggttagcaaagattaagtcaaaagagccataaatcaattaatggatcaaggattagagggttaagaaagaagaaaaatagcaaaggatttgtcacatatttcaaagaaggctatacaagaagaaggtttttcatacttggatatccaattattggtttaagatgtcatgcatgtactcaaaaataaaggggaaattgaatagatttttaaggaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="13495" stop="77358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13795" g_stop="14302" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14303" i_stop="14411" i_length="109">
            <donor d_prob="0.119" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14412" g_stop="14445" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="542" r_length="34" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-U346269" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13795" e_stop="14302"/>
          <exon e_start="14412" e_stop="14445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGAGTTCTTACACAATCATTCACATTAATTTTATAATAAATTATTAAAGTTATCAATGTATTTCCACAATAGAAAATGAAGTTGTTTAGATAGGGAAGAAGCCATTGCTAATTTGAAAAAGAAAAAAAAAAACTTAAAAGTGTAGA</genome_strand>
        <mrna_strand>AAATGGTTAAGAGATGAAAATTTTCAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTTTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGGGTGCCAAAGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATTGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTTAAGTGAGTACTACCTCTTGGAATGAAAAGAAGAGTGGAGTATTGGTTAGCAAAGATTAAGTCAAAAGAGCCATAAATCAATTAATGGATCAAGGATTAGAGGGTTAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTTTTCATACTTGGATATCCAATTATTGGTTTAAGATGTCATGCATGTACTCAAAAATAAAGGGGAAATTGAATAGATTTTTAAGG.............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338336" ref_strand="+" ref_description="SGN-U338336        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:15432818-15443960 REVERSE | Aliases: F13K3.21, F13K3_21(evalue: 3e-37, score=152) genbank/nr: HEAT(evalue: 4e-51, score=204)">
      <seq>agggatgcagttgaacctgttctcctgaacctttctatacgtcttcggaatctccaagagtgcatgaatgagaagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgaaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcgaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggcatttgatgctccttggccagttgtccaggcaaaagcggtttatttatgcagcagcgtgctttctctctccgatgataaacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30851" stop="27516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30551" g_stop="30495" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="156" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28894" g_stop="28823" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="228" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28746" g_stop="28661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28585" g_stop="28492" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="408" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27902" g_stop="27816" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="495" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-U338336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30551" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
          <exon e_start="28894" e_stop="28823"/>
          <exon e_start="28746" e_stop="28661"/>
          <exon e_start="28585" e_stop="28492"/>
          <exon e_start="27902" e_stop="27816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATGACAGGCTTGTCCACAATTAAATCAATGTTCAACAGGGGAACACACTGTATTGAGATTTCTAGCTCGCTTGACTGGCCGTAAGATGCTCAAATCAATGGGAGCTATCCCACCCTTCTTCCTTGATCTATGTGGATGATTTAGCGTTTTTTTGCTTTTAGTTCCCAATTAACTATTTATGGTATAGCTGAAAATCGCTTGACGAAACACATTTTGTAGTTTCTTCTAAATGAAAAATCTGTTCGATGAAGTGCTCTCTACAGCTTTTTCCACACTCCGAAAACAACTTGGTAAAACTTTCTGGTGTACAGGCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATA</genome_strand>
        <mrna_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA............................................................................AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG...........................................................................AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAAAGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326347" ref_strand="+" ref_description="SGN-U326347        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:15432818-15443960 REVERSE | Aliases: F13K3.21, F13K3_21(evalue: 9e-13, score=70.9) genbank/nr: gi|31711758|gb|AAP68235.1| At2g36810 [Arabidopsis thaliana] >gi|27311857|gb|AAO00894.1| Unknown protein [Arabidopsis thaliana] (evalue: 4e-29, score=110)">
      <seq>agggatgcagttgaacctgttctcctgaacctttctatacgtcttcggaatctccaagagtgcatgaatgagaagatacgagccaatgcttatgcggcatttggagcactgagcacttacggatctgggcctcagcaagactcttttcttgagcaggctcatgctgctttcccacggatggttttacatctacatgaggatgatcttagtgtgagacaagcttgccgagtaagtttaatctgccagatttttttttcttatattgttcaggatggctttatgagttaactcttcaacacgccagaacactttgaaatccattgctcccttgatggaaattgatggaataactgctgttttcaacagtcactggtttagttcggaccatcggtatgaacccattgacttgatcagtccttaatggttattcatgagtaatgatattgagttgccttcaatttttagaggcgactatgaagactttcttcgagaacttgcaaggcaactaactcaaaatcttgctgcccgagtagataggtacatggcatcaataatacaggtccgtattcttttttctaatcttgcatttggagaaactttgaaggtatgcatgtctttgtattgaaatgccattaaattcagcgctatgatgaaattggtacgagaaaaaaaagttatgaatttcctaccattcaaaagtaaacgcagttcccctaagaagctggtgggtttcatagaatcatattcatactaaaatagctgtcaaattttggtgttataaaattttcaagtgcttgaatttccgaatcttcagaaagtagtagtaggcatacttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="30851" stop="27911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30551" g_stop="30495" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29789" g_stop="29691" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="156" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28894" g_stop="28211" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="840" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-U326347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30551" e_stop="30495"/>
          <exon e_start="29789" e_stop="29691"/>
          <exon e_start="28894" e_stop="28211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAAGTAAGTTGATCTACTATCCAAATGTAACTTTCTTCAACTTTAGATTTTGTAGTAATAGCTTCAAATTGGTTCAATTGCTGTACTAGTCCAATTATATCACATTCTAAACTATTTACTTAGAGCTGACAACAGGGTGGCATTGTGTTAAAAGACTTTTGTATCAGGACGGTAACACAACTCTGTTTGGACATCCTAGGGTGATGTCTTTTGCCTTGACATAATATTTTGCATTGTTTGTCAACCTTCAAGACATGTCTCTTGATACAAGTTGTACTTTAATTTTATATTACACCCCTTAACTGTATGTTCAAGTTGTTAAATATATGAGTGACACCCATATATTGTACTGTGCTAGTGTTGCCACCTATGTTGCTCAGACTCTTCAAAAATGCCGGCGAGTGTATGTCGTATCCTCCAAAAGTAGTACATTTGGAGGATCCGACACGGGTGCAGCAACATCATTGGAGCATTCGAACGACATAGGTTGCCATAATTGTAGTCTGTTTTTTAAAAGAACTGAAGTAATTTAATGGTAGGTTTTATATTTTGTCTCTGAAAATTAGTGCATATTGATGTGTGATTTATCTGTTGGGAAAGAAGCACATTGTAACATCATTATCTTCTAAACTGTGGATTATAGAAATATTAACAAGTGCATGTTGAGATGGCCATAGCGTATAACATTATTTTCTTGCCTCATAAAAGGAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAGGTATCATCTCTCTCATTAAACCATCCGTCACCACCTAAAATTGATTTGGTTTCTTTTTCTCATTAGCACATTTGTAGTTTTAGATGTCCTTTTAATTGCATCATAAGGTTTCATATCCAACATCACAATTCAAAAATGGTCTCAAACGAGGATGTTTTGGTTGTATTGGCTTTCTCATTTCGGATGAGCGTATGTAAAGGACGTTACATATTCAATTGTTTCTTCTTCATTAAATGATCAATATTTATTTGATTGACAATGTAGGTCACTTTTCTCTAATAGTTGCCCCTCATGTATATTTACTAAATCATGAAATTCCGAAATGGGTTTGTTTATATTTATGGTGCATCTTCTTTAATTTTAAAACCTTCAGTTTAATGCCTTCGGTTAGAATCTCTGAAAGAGGAGCATAATCTAGACTTAACTTTGCTGTTAATGGGTCTGTTAATTACTTAAGTTCCCTAAGGCCTCTGTTGGCAGTGAATATTCTGTTTTACGCTCCCCAATTCTTGATCTGCTCTTTGTATTTGAAGGACCTCATACTTTTCTTCTACTTATCATCATACTTTACTTGCTTGGGTAAAAACGAGCAGTAGATATACCTTTTCTATCCCACATCTTCGTTGTCACATATGGATTTCTAATGGGATGTGATCTATTTTGGTCTCCATTTCTGTTGTACGAGGAGTAGAGTTCATTAATTCTCGCTTTTCGATTTGGTTAATCAATATCTAATCTATTTCTGTCTTGTATTGAACTTTATCAATAAATAATCTTCACCTTTTCTACTCGTCAGGCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</genome_strand>
        <mrna_strand>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315237" ref_strand="+" ref_description="SGN-U315237        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: AT3G09920.2 | Symbol: None | similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:At1g60890.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:At1g10900.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Putative Phosphatidylinositol-4-phosphate 5-Kinase [Oryza sativa (japonica cultivar-group)] (GB:AAX95508.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase (InterPro:IPR002498); contains InterPro domain MORN motif (InterPro:IPR003409) | chr3:3040308-3044772 REVERSE | Aliases: None (evalue: 0, score=776) genbank/nr: gi|15232786|ref|NP_187603.1| phosphatidylinositol-4-phosphate 5-kinase -related [Arabidopsis thaliana] gi|6681327|gb|AAF23244.1| putative phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana](evalue: 0, score=776)">
      <seq>cgacctacatttgtttttctggaaagacgatggagtcttgaaggagccattgagaaagttattggtcataatccacatggagacatggaggatgctatgagtgctccaattttggaaagagagtacatgcaaggcatcctaatcagtgaggttgtcttaaatgagcgtttttcaccaccatctgggagagccagaaggaggcaaaagagatttgtaagggaattaaagagaccaggtgaagcaatcataaagggtcacaggagttatgatttaatgctaagtctacagcttgggattagatacactgtggggaaaattacacctatacaaagacgagatatacgaacttcagattttggtccacgtgctagcttttggatgtattttccaaaaggaggatctcagttgacacctacacaccagtctgaagatttcaagtggaaagattattgcccaatggtcttcaggaatctgagggagatgttcaagattgatgctgctgattacatgatgtcaatttgtggaaatgatgcccttagagagctttcttctcctggaaaaagtggcagtgtatttttcctgtctcaagatgaccgtttcatgattaagacattacgtaaatctgaagttaaggttttgctgcggatgcttccgaattatcatcgccatgtcaagacatatgagaatactctcatcactaaattttttggacttcacaggataaaaccttccagtggacaaaagttccgctttgtagtaatgggaaatatgttttgtacggagttgagaatccaccgaagatttgatcttaaaggttcttcactaggacgatctgctgataaggttgaaattgacgagaacactatacttaaggatctagatttgaactactgcttttatctagagccttcttggcgcgaagctttattaaggcagatcgaaattgacagtaaattcttggaggaagagaacattatggattacagcctcttgttaggtgttcattatagagcacctcaacacctacaatctctcatttcgtgtagtggacgcaccacggcagatggactagaaattgttgcagaagaagagtctctggaggatgaaatatcgccccagggccttgttttggtcccacgtggaagtgatgatagtgtcgttgtgggtccgcatgtcagaggcagccgattacgagcgtcatctgctaccggtgacgcggaagtggacctcctcctccccgggacagcaagattccaaattcagcttggggtgaatatgccagcaagggcggagtacataccaaaagaaggtgaaacacaggtgttccacgaagtatatgacgttgtgttatacctggggatcattgatatattgcaagaatacaacatgagcaagaagttagaacatgcatacaaatcgattcagtttgattctgtttccatttctgcagttgacccaacgtactactcggagaggttcttggagttcattcgaaaggtcttccctacatatgctgtagcaacttgaacagtatccttagctgttagcggttaccatggcagagacacacagctgctgtttgtaatttattgaagagtgtataatgcggattatggatttgtagttgatagcaatttctttacaagttgttgaatccaaaatcatagcagacgattgatgtgttaaaaagatagcttgtatacacctaaaacagagattttagaagttgcttttttttaatcttaggatctgaaaagcaataagctgcttttaaaatggtattctattacattctcaaaagccttcaaagataaacgagtcggcctaacagatacaacagtttctggcaacataaatgattttgaaagatttaaatggacgaaaaccacaaactcaaaaatcagcacgaaaagtcgaattttcgtaccatgcaattaaaggtaggttctatgacttcggttcatcaacccatgttgggtggtggaggtggtgggcgcattccttggccttgcatctgttgttgacctggaaaaccttgtggaggcagtttaatcattctagtaatccatttctcaagagttctctttttcttctctgtattttactgaaaagaaaaaaatggagggtattaagaagttggctgttttcaccatttacatgatgatgcttgtcgctttcggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="81373" stop="89624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81673" g_stop="81971" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83217" g_stop="83384" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="467" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84020" g_stop="84185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="633" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85150" g_stop="85260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="744" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86100" g_stop="86287" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="932" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87237" g_stop="87394" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1090" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87927" g_stop="88086" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1250" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88529" g_stop="89323" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1251" r_stop="2045" r_length="795" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-U315237" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2045</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81673" e_stop="81971"/>
          <exon e_start="83217" e_stop="83384"/>
          <exon e_start="84020" e_stop="84185"/>
          <exon e_start="85150" e_stop="85260"/>
          <exon e_start="86100" e_stop="86287"/>
          <exon e_start="87237" e_stop="87394"/>
          <exon e_start="87927" e_stop="88086"/>
          <exon e_start="88529" e_stop="89323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCTACAAATGTTTCTCTGGAAAGACGATGGAGTCTTGAAGTAGCCATTGAGAAAGTTATTGGTCATAATTTAGATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAGGTGCGCTGCTTGTGGCTACTGATGACTTTATAGCATGTGTTTGTTGGAATATGTTTTAACTTGTTCTGTTTTCCCCAATTTTCTAACGATTATTTCACTCATTTTTCATTGATTCACTTGGTTCCCTGAACGTAATATTGTGTTATTTTTGTATAGATCATTCACACTATTTTGCTAGACATCATTCATACTATTTTGCTAGACTTAATGCATTTAGAAAGAAATATTGTGTTATTTTTGTATAGATCATTCATACTATTTTGCTAGAATTAATGCATTTAGCAAGCTGCTTTTTAGGTATGTTCTATTTTCTCTAGGTAAAATGAAAAGAGAGAAGACTGGAAGGACATTGGTATTCGAGTTTTTATGTGCATATAGAAGAATCATAGGAAGTTCTCCTACGAGCCTTACTTTTCTTGTGTCGCCATGCATAGTTTGAGGACGAGAATGCCTCTGGATAGCATTGGAAGTCAAAGGAAGTTACTAACTTCAAGACATCTTCTATTTGAGAACTTTAATATGGATGTACTTGCTGAAAATCTTTATGGTACCAATAGTTGTGTATATATAAATGCGTTCAGAGGAAGAAATCATGAAATATCAATTGGATAATTCTGGGTTCTTCTTGATGGCCAATTCAGATGTAAGTTTACAAAGTCTTGATTTTTGAAGGACGTAAAAAGTTAAAATAATCAAAAAATGATACTTGGCAAACACTCTGGTGTTTACTATGCTAAAACTGTTGTATTTAGAGCTACCATACTAACTACTACAAATATGTTATCGGGTTTTCAGAAGCAATACTGAGGCAGATAATCAATGACAGTAATCTGAAGTTAGAAAATCCCTGGATCAAGTGGATTTAGTATCAACCTTACTAGTATCTTACACAATCTACTCTGAGATTTTCTTGACTCCTGAAGTAGGAATAGCATTGAATGAGGATCTCATGTGCAAATATGAACTGTTTTTTTCACATGAAATTAATCACCGAGTTTCAATTTTCTTCTCCCGATTCCTGCTCCTCCATCACTCTGAGATTGCTACAATCCTCTAAATATTTAACTTGGATGTAAAAAGATATGTTCGGTTAGGCACACAGAAATCCCTGGATATGTTGCCTTATTTAATTTGATATTTCATACTCAATTCATCATCCTCTTGAGGGAGGCAATCATTTGCAGCACGATTTTGTTGCTCCTTTTTATCATATATCAAGCGTGTGACCAGTTGAAATGTGACCAGATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAGGTTGGTGGTTTGCTATCTTTTATTTAACAATGGTTGAAAAACTCTAAGCAGCTGCATGCATATTGGATTTTTTCGGGCTAGATGTGGTTTTCAATTAAGATTCATAATGCATGTTCTTTTTTTCTTTCTTTCTTTTTGCTTTTATTTGTTTATCTTCCTTAGATATGTCTATTGCATGTCAGATCAGTGAACGCCACTTATTTTGAGAAATAGATGTTCTTCTGTAGCAATAATGCTATTTCTTGGTGTTTTCTGAGGCATCTTCACTAACTTATCAGCATTTTGGATATGCTACACTCACATAGAAACTGAAATGGCTTCATGTTATCTTCTTTGCCGAAGCTGTATAATTAGAACTTCTATATGGTTTTATTCCGGTTATCATATTTGAGATTTTGTGAAGGCTGGTCTTGCGCTTGTGGAGGTTAAGTGGGGCATGCATGCCCGACCAAAGTAGCTCGCGTCCCTCCTGCAGATGTTTTTCTTCTTCAAGTAGAGTAGCCTCCTTGTATCCCTCCCTAGATGCTTTTTCTTGTTACTGTTGATGTATTATTAGAAGTCAAAACTAGTTTGTTAGGCTTTCTGATTTTCTATATGCTTACGTGTAGGAACTAAAATGGACTTATTTCTTGTAGGAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAGGTGTGTAATCTTGACTTAAACCTATCGCTGTCACAAATCACTTTTATCAGAAACTTTTTATCTGTCTAGCTGGGGGAAATAGAAAATGTAAAATCACAGTGATACAATAAGTTGGAAAAGGAGTGATATCTTAAGAAGTCGTTTTTCTGTATGTGAAGTGAAATATCATCAAAGGCGCAACCAGAGGAATTAGGAAATCATTGATTCAAAGACAGTTTTTGGTTATCTTGATTGTTTCAGTTTAATTGTTTCGCTATCACCTTGATTTTATGGTTAGATGATAGCACAGTATCCTCTCAGGCAACACTTAATGTATATACATCGTTCTTCTGGGCCACAAGTTATCTTCTGCACTAGGAAATTATGATTGTGAGAGCAGCAACATCGTGTACTTCAATTTCTGTTACTATTTGTTGTTTCTTATACTTCGATTATAGGATTATTTTGATGTAGTTACTGCTCAGAATGTTTTGTTATGCTTTCTCTTCAGTTACTTCTTTTTGTGGAGTGTTTTGGATTGTTTTTCCTCTAGTCGAGGGTCTATCAGAAACAACCTCTCTACCTCAGAGGTAGAGGTAAGGTCTGCATACACTCTACCCTCCCAAGACCTCACCTTGTGGGACTATGCATAAACTTTGCATGTATAAAAAAGAGAAGCAGACAGGGCTATTCAAAATACTCTCTTGCTTAATATTACCTGTCTCATTACTTTGCTTAAAGTTCTTCCACATACCCCTTGAAATGCTTCTGACCTGTCAAATTTATTCCAGTTGAGTTTCCCCCTTATTGTTGCAAGGCTTCATACTTAAGAAAACTGCTCAGTTTTAACGTCAGCTAAGTTTTGGGGAGATCCTTGCAGATGTCTCTTTTAAAGATTTGCCTGTTTAACTGTTTTATTGGAGTTCCTCTTACGTTTTAGTTAGGTATGAAAAGAGAGCATCATGACCATTCATCTCACATATAGGTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAGGTAATATACTTGTAGATTTTGATCTGCATATAATAAAAGTTAATTGTATTATTTTTATGTACTTGTGTTAATATTTCATTAAAAATGAAATAATATAAAAACAAAACTTACGTTATCTTGCGACATGTGAAAGCTGTTTGGATTCTATTTACTCTACATTCTTTAATACTCCTGTTTGTCATATTTTCCTGTTAAGTCCATTTAAAAAGAATGTCTTTTTCCCGTTTTAGCAAATCTTTAATTTCAACTTTCGACACGACATTTTTAAGGCCACGAGATAAAGGATATTTTGGTACATTCTACATATCTTTAGTTTAAGACCACAAGATTCAAGTCTTCTTTACTTTCTTACACTCCAAGCCAAGTCAAAATCAAACAAACAAATTAAAAACGAAGGGAGTAATGAATTGTTGTGGTAAATCCCACCTAGGAGTGAACATTGAACCTTGCCCACTTTGCTCCTGTCATGACTTGAACTCCTTACCTCTTGGTTGGATATGGAGTTCTCTTGCCACTGGAAGAATCTCACATGTCTTACACTACAATTCATATAGGTCTAGACATATGTAATTTGGAAGGTTCAATTGAATGTTGATGTATCTCCCTCCAAGTCAATAAAATAGATTTAATTTGACCTGCGTGGTTATAAGATTAAAATATTTTAATAGATTATTATAAGTAAGTTTGATTTAGAAGGTCTGAAGGTGTGTGGAGGTGGGGTGGGGTGGGGAGGGGCGTACCTTGTCAAGTAAAAGTATAATTTTCCTCCAGGTAGGAAAACAAGTGTAACAAACACTTCTGATATACATAAGAGTAACAATTTTGTGATGTTCTTGCAGTTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAGGTAAGTGACTTTTTATTAAATATTCTCATTTTCTCTAATGTACCTACATTTGTTACTTTCAAATGCCATCCTAACTTAAGTGTGTAGTAAATATATCTAAATGTTGATGGTAAGTGGGTATTGATCCCTAGTCCTCTAGGTAAATAACTCAGCATTCAACCAAGTGTACCGTTTAGCCTTCTTGTAGCATGAGTGCCAGCAGATAATATTATACCAATTTAAAAAATATATACTTATATGACCTAGTTTTACGCAGAGATCGCAGGTTCATGTGCCTCATATTTTAGCCTAAAGATTTTCCCTTGATTGTAATGGTCTGGTGTAAGTTGTTGAAGTCATATGATGTACTTGCAAAGAAATGGTAGCCCTCCTTGTTCTGTTTCACTATATCTTTTGGTTGGTAGGAAGAGTTTCAAGTATTTTTTGCCAAGTTTCATAAGATATGACAGTTTAAAGTTGTTGGTTCGTGGCGACATTTGTCTTTTGCACCTCGGAGTTATGTGTTTCCGAATTGAAAGCAACCTTAACTCTTTCTTTTAGCGTTTGATGGTCAGTGAAATCACACTAGAGTTCTTTAAGATCTATGTAAATTGTTGAGTTAATAACTCGCTACCTGTTGGAATTTGTATAACCTATCTCATTTAAAAGTTTAAGTTGTTAGAGAGAGTACACTTATATTTACCTAATTATATCCAACATGTCGCTTCATGTGCGAGCAAGTTCCGTTTTTCGTCGGCCAATCATGTGGAAATTCTTTTTTATATGGGTGGTGCCATGATGGTGAGACTTGAAAGCAGGGCCTCTGTCTGCTGATACAATGTTGAAATATGCGACTTATCTCATCTAAAACCTTAAGCGATTAGAATGAGTACACTCTTATAGCTTAAGCTGTTGGAGTACGCTCTTATTTACTTGATTACATCTTCAACAGAATCGTTTGTTTCTACAGGCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAGGTTTGTCTCTCTAAACAAAAAATATCTGCATCCGTTTCAATTGGTTTGTCTTACTTCCCTTTTTCGTCTGTTTCAAGACGAATGTCTCTTTCCCTTTCTGGTAATTTCTTAATTTTAACTATTTCTTAGTTTTCACTTTCCACATAACATGTTACATTTTGATACATTCTACGTATCTGTAATTTTTATTTAAGACCACAACATTCAAAAGTCTTATTTACTTTCTTAAACTCCGTGTCAAGTCAGAGTGGACAAACAAATTGAAATGGAGGTATTACTCTTTTAAGACTCAACAATTAACACTAGGAAAAAAGAAGTATGACCTGATAGCTGGTGGCTTTTCAGTTAAATGATGGTTCATAATAAAGTCGAATCTCGTCATATATCTGTAGTTAGTTAAGTAAGAAACTTAAATTGAAACTGAGGGAGTATAATTTAGTAATCTCGTAAAAAGAATAAAGTTATATATATCTTCTTTTTTTTCTTGGCTTTATGACTTTCTATGAACAATTGTTTTGTTTTACTACTTCAGAGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAGGTAATTTTTTGCCAGGCTTGAACATTGTTATTTTCTTAAGTTGTAGCACTCTTTGTAGTCACAGTGAGATACTGGGATGTATTACTCCCTCCGTTTCAATTTGAAGGTCTTACTTTCCATTTTAGTCCGTTTCATAAAGACCTATTGAGTTTCTTGCACTGGAAAACACCAAACAGAAGAACACACATGACAATTGGGATTGGTGAAAGCCAGCAACTTGTTACGCCTCCTTTCAACTGCTAGAGATGTTGCACGAAAGCCTCTGTGCCTTTGCGCATCTAGTTTTGCTTTCTTTCGCGCAACTTTGCTCACGAGTTCATGAAATGATATATACATATATATCTATTTCAGAAAGAATGAAGACTTAAGTTGATCTTTCATGTTATGATTTTGGTGTTGACAATTTTACATGCCTAAACACATCTCTTTGCGCGTCAAGCAGATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAAATGGTATTCTATTACATTCTCAAAAGCCTTCAAAGATAAACGAGTCGGCCTAACAGATACAACAGTTTCTGGCAACATAAATGATTTTGAAAGATTTAAATGGACGAAAACCACAAACTCAAAAATCAGCACGAAAAGTCGAATTTTCGTACCATGCAATTAAAGGTAGGTTCTATGACTTCGGTTCATCAACCCATGTTGGGTGGTGGAGGTGGTGGGCGCATTCCTTGGCCTTGCATCTGTTGTTGACCTGGAAAACCTTGTGGAGGC</genome_strand>
        <mrna_strand>CGACCTACATTTGTTTTTCTGGAAAGACGATGGAGTCTTGAAGGAGCCATTGAGAAAGTTATTGGTCATAATCCACATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAAATGGTATTCTATTACATTCTCAAAAGCCTTCAAAGATAAACGAGTCGGCCTAACAGATACAACAGTTTCTGGCAACATAAATGATTTTGAAAGATTTAAATGGACGAAAACCACAAACTCAAAAATCAGCACGAAAAGTCGAATTTTCGTACCATGCAATTAAAGGTAGGTTCTATGACTTCGGTTCATCAACCCATGTTGGGTGGTGGAGGTGGTGGGCGCATTCCTTGGCCTTGCATCTGTTGTTGACCTGGAAAACCTTGTGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315238" ref_strand="+" ref_description="SGN-U315238        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyproline-rich glycoprotein family protein, similar to SWISS-PROT:Q15428 | chr2:13840622-13842736 REVERSE | Aliases: T26B15.16, T26B15_16(evalue: 6e-102, score=367) genbank/nr: gi|18403023|ref|NP_565747.1| spliceosome associated protein-family [Arabidopsis thaliana] gi|15450715|gb|AAK96629.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gi|20197236|gb|AAC25942.2| putative spliceosome associated protein [Arabidopsis thaliana] gi|20466089|gb|AAM19966.1| At2g32600/T26B15.16 [Arabidopsis thaliana](evalue: 5e-100, score=367)">
      <seq>acgaaatggacagagaatggggttcgaagccgggaagcggcggcgccgcctctgcccagaacgaggcaatcgaccgccgtgagcggttgcgccggctggctttagaaaccatagacctcgcaaaagatccttatttcatgcgaaatcatctcggaagctatgaatgtaagctttgcttgacgttacacaacaatgaagggaattacttggctcacactcaaggaaaacggcatcagactaatttagctaaaagagctgctcgtgaagctaaggatgctcctgctcaacctcagcctcataagcgcaaagttactctcaaaagaaatgttaaaattggtaggcctggctaccgagtgaccaagcaatttgatccggaaacaaaacaaagatctcttttattccagattgaatatcctgagattgaagacaacacaaagccaaggcaccgattcatgtcctcattcgagcagaaaatccaaccatttgacaaaagatatcagtttcttctgtttgctgctgaaccatatgagatcatttcatttaaggttccaagcactgagattgacaaatcaactcccaagtttttctcgcattgggatccagattcgaaaatgttcactttgcagttatacttcaagactaagccactggagactaacaagccaccaactgctcctacagacaacgggttgtcagcaccaggtgcctcatccaggcctctacctccaccaccccaagctccacctccacctccaccacaaggtcttcctcctggagctccaaatcctccacccagaggcccaccatctggatcaatgcctccaccccctccccctatgggtaacggacctagacctatgccaccaggaggtaacttacctgccccaccacctcctcccgttggtggtggagctatggctaatttcactccaggtggacacatgggtagacctccaatgatgcctccacaaggttttccaggtcaacaacagatgcaaggccaaggaatgcgcccaccacctccaccacccaacatgggttgatgaaccgaagtcatagaacctacctttaattgcatggtacgaaaattcgacttttcgtgctgatttttgagtttgtggttttcgtccatttaaatctttcaaaatcatttatgttgccagaaactgttgtatctgttaggccgactcgtttatctttgaaggcttttgagaatgtaatagaataccattttaaaagcagcttattgcttttcagatcctaagattaaaaaaaagcaacttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="93777" stop="88696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93477" g_stop="93151" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92048" g_stop="91972" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="404" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90251" g_stop="90186" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90025" g_stop="89951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="545" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89852" g_stop="89778" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="620" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89664" g_stop="88997" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="1288" r_length="668" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1289" polyA_stop="1298"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-U315238" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1288</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93477" e_stop="93151"/>
          <exon e_start="92048" e_stop="91972"/>
          <exon e_start="90251" e_stop="90186"/>
          <exon e_start="90025" e_stop="89951"/>
          <exon e_start="89852" e_stop="89778"/>
          <exon e_start="89664" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGGTATGATTTGATATAATAATCAGTTTTTTTCGGGTTGATGAGTTCTGTTATTTGAATTTGGGACTTAATATTGGTGATATATAAGAGATATTAGTGTTATTATTACTTTGTTGAATTAGGGACAGGATTTAGGGTTTAAGACTATCAATTCTTTATGTAACCGTAACCACAATTCCACACTGTAACTGTGTAGCCTAGTAGTTAATGAAGTAGGACAAATCAGTGGAGACCAGGGTTCACTTTCAGTAAGGCAAAGTTCACTGCCGTTAGCATAAGCCTTGAGCTTTAATGGACAAATCTATTAGCTACCCTATATATGTGTTCGTGAAAGGTAGTAGGATAACATTTGATTTGAAACCGTCCAATCACCTCATGAGTCTGGTTCGGCTCTGCCACCTGCCAACGTTGACCCTGCTCGTTTTTGCGCCAAGGTGATAAGGCCTTGATATACATGTCTGCAGTGTATGCCATACGAATTGGACGAACACCACATTTATCAAGAAAAAATAAATTATGTACCGTAAGATTTGATTGTGTTGAAAGAATGTTTAGAAATTACTTCGCCTTCTAGCACCCAAGAATTGGAGAAGTTCAAACATAGGTCGTAGGAGACTGTGGGAGTGGATGTGAGGACAAGGGGCTCTACAAAACTTCCTTGAAACTTCTGGTCGTTCATATCCCTGTGAAACCAAATAAGTCAGCTGATATGTTTTGATCTGCCTAGCTTTGGTGAATGGAGTTTTGCAGAGTAGCGAAGTTGAGGTGGAGGCAAGTTCTCTCAGTTATCCATGATAGTGAAGACAAAATATTTCACCTTCTATGAAACAATACTTGACCAAAGTTCCTTAAACTATTGAACCTTGTAACTATTTAATCAATCAGTTATGCCTTAATCCTAAGTTAGTTGAGATGGTTTTTTGAATCCTATATAAGCATTACATTAAATTTTGCCCATTTACCCATTTGGGATGAGATTCATCATACTTTGAATATCTTTCAGGCTAAGAAGTTTTTAGATTTTGAATTTTTGATGATGATTGATTATCCATTTTCCTCGATTCTTGAGTGTCCTGTGCTAATTTCTTGCGGCCTGGAACTGCAGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGGTGAGACTTACTGTTTTGTGTCTTTTACTTTCAATTTGATGATGTGTCTGCTGTCAATTTAAGTCTTGTAGTCATCATTGTTTGCTGCTGATGGTTCATACTAAGTAGTTCATCTAATGGCCGAACTTCTTTACCTCTGGGAATAGATGTTATTTTTCACTTGTTCCGGAAGTAAGCATTTTCACTGTCGAAGCGAAGAACTACAGAACTATCGTTTGAAAGTTCAAAATGGGATAAGGAAAGGATAGCCTAGTGGAAATGGCTAGCTACCTCCAACAATGGGTTTTGGGGGGTTCAAATCTTTCAGGGGGGAGTGGGAAAAGCCACTATTTGGCTAATGGGAAGGTAGGTGGGCTTTAGGGAGAGTTTAGTGGGTTATAGTATATCCAAATAAAAGTTAACAACTACGCAAGCAATAGTATTAGTTTACTATATGTTAAAGAATACAGTGCTTTGGGTGTTGTTATATATGTTTAGAAATGTGTGAGTTGGGACATCCTACATCGATTTGTTCAGCCATGATATAGAGGTTTTAATAGATTATCTATTTGAAAATATATTCGGGCTTCAAAAACTTTACATCACTTGAACCAGATTGTTGTTCGACTCAAGTAATTTAGGCTTTCTTTTACCTATCCTTCCCATCAGGCGTTGTTCACGAATGGATACCCAGTTATCAACAAGCCTTCCCTATTCTGCACTACAATTGTTTTGCTTGTCATGCCTCTATTTTTTAACACGCCTTTTTAATGTGATTGGATGGATAACCGGTGGTTCCTATAGTTGCATACTTGCGTTTATATTGACATTATATATTTGTTGTAGGAATTTGACCTAATTAATATTAGGAGATGGCCTTATATTTTGTCTGATTGACAGTCACAAGATTTTGAATTTGACTATTTCCTTTCAAAGCAAACTTGAGTTTAACCGATTCCCACTTGCAAACCACGATATTATTTAGGCTAAGAATATGAGAAATGTTAGTCTGTAGTTTATCAAACTGAAGTGATTGTTTTTGCCAAAAAAGTCTCGTGTTGCAGACCAACAGGCAGGCTGCGGTTATTGTTGGGGTTATTCGAGAAAGGAGGTGTACCTAATATGTACAAAGACATCTCTGGGTTACACAGCTGGGTAACAAACTTTGGCATGTTGCCTTGCCCCAAAACTAAAATATGAAAAATAAAAGCAACTATCATGTGTTTCAAAATCTTGGAGGCTAGTGTAAGAACATAGAGACCAAGTCTTATGCTCTGGATGCACTGCATGGATTCTTGTTTATTGTGTGAACTATGATGATGAAACAGTAAAATAAGGCAGCACAAGGACTTCATCCAGATTATATGTAATTTAAAAATGTGATAACGGAAGAAAATGGTTTAATAGTTTGACTAACTATAAACTTTACGTTGCTAAAAAAAAAATAGTTTGACTAACTATTGGTTCCTTAATAGTAATTGGTCTAACTATAGGTTACGTCGATTATTTTCTGCTACTATAATGCACCAACCTCTGCTAATGTACTCAAAGCATGTGTCATGATAGAAGGAAAAAGTTCAGATCACAAGAAATGCACTTTTGGCACATGACATATGATAGACAAGTATATGATGAGTTTGAATAGCCAAGTTTACCTTCCATTCCTTTGGTTTCCCCCTTTTCTTACTTTATCTAAGTGTTGCACTGGCTCATAGTTTCATGATGGTGGTGAATGTTGCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAGGTTTGCATGTCATATATTCATTTCTCGAGTGGTTCCACTGTATTTAACAGTGTGCTATTTAAGTGCCCCTTTTCTGGACTTTGCAAGTTGGAAAAATAAAAAATCTTATATCTTTCCAAGATTAACTAGGTATTAATCTTATCTCTTTTCCTTTGGACAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAGGTAAACTCTTTTCTCATGGTCGAACATTATCTTGACCACGTTAATAATATGTTCCTACTTTTCGTAGTTTATTGAATCGTTTCTGTTGCATTATGCAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTGTGAGTCTTCTTACTTAAATTACAAACTTGTACTACTCAGAAGGGTTTCCGAAAATTCACTCTTATTTTCATGGTTAGCCTCTTACTCTCTCTTCGGGATGAATTAATTTCAGTTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</genome_strand>
        <mrna_strand>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG................................................................................................................................................................AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG..................................................................................................GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT.................................................................................................................TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322698" ref_strand="+" ref_description="SGN-U322698        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G03530.1 | Symbol: None | Ras-related GTP-binding family protein, contains Pfam profile: PF00071 Ras family | chr5:885521-887389 REVERSE | Aliases: F12E4.310, F12E4_310 (evalue: 1e-88, score=322) genbank/nr: gi|18414255|ref|NP_568121.1| Ras family GTP-binding protein [Arabidopsis thaliana] gi|11274537|pir||T48379 AtRab GTP-binding protein - Arabidopsis thaliana gi|2723477|dbj|BAA24074.1| GTP-binding protein [Arabidopsis thaliana] gi|7378638|emb|CAB83314.1| AtRab GTP-binding protein [Arabidopsis thaliana] gi|26453054|dbj|BAC43603.1| putative AtRab GTP-binding protein [Arabidopsis thaliana] gi|29824251|gb|AAP04086.1| unknown protein [Arabidopsis thaliana](evalue: 1e-86, score=322)">
      <seq>gagaaagtagtgaatcatgccaaaagctttctgaatacttttacttggccctctgtatttctctctgtcgccattgtgtcactgttgcatagtttctagagagagaaagtgcagagtttttgtgttgaattggaaggagagagagagagagttgagttgaggaaggaggagttcgccgatgggtccatcgacggcgacgacggggcagagcaacagcagttacgatctgtcatttaagatcttgttgatcggagattctggagttggaaagagtagcttgcttgttagcttcatttctaatgccgttgacgatctggcccctaccattggcgttgattttaagatcaagacactcactgttagtgggaaaaaactgaagcttaccatttgggacacagctgggcaggagaggttcaggacactgacaagctcctactacagaggtgctcaagggatcattcttgtctatgatgtaacaagaagagagaccttcacaaacctgtctgatgtgtgggcaaaagaggtggagctgtatagtaataatcaggattgtgtaaagatgctggttggaaataaagttgacagagaatccgagagagctgtgaccagggaagaaggcattgccttagcgaaggaacttggaggtctatttcttgaatgtagtgctaaaactcgagaaaatgtgcaaaactgctttgaagagcttgccttaaagataatggaggtgcctagtctccttgaagaaggatccactgtagggaagagaaatatcttgaaacagaaacaagaacagcaaacacaacagggcggtggtggttgctgctcatgataaaaaaaattgtgcactagatggtgcacatatcaaatatgtatatgctggtttcttttccttcttactgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="98870" stop="104713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99170" g_stop="99498" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100824" g_stop="100892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101816" g_stop="101881" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="464" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102948" g_stop="103069" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="586" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103688" g_stop="103816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="715" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104225" g_stop="104413" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="904" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-U322698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99170" e_stop="99498"/>
          <exon e_start="100824" e_stop="100892"/>
          <exon e_start="101816" e_stop="101881"/>
          <exon e_start="102948" e_stop="103069"/>
          <exon e_start="103688" e_stop="103816"/>
          <exon e_start="104225" e_stop="104413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTGGTACTCTCTTTGCTCCTTTTAGCTCAGTTTGTGTGTGCGTGAATGCAAACATATGCTGTGAAGAAAAAAATGTGTATTCTGTATTTTCCTGTTCTTTTTGGTAGTTTTTACTTGATGATCATTTGATTTGGAATTTGGAGTTATGAGCTAGGAATTCTGTATCTAGGAATCCGATGAATGAATGAACTAGTATACAACATGCCGGAGTTTTTTATGATTTGTAGCTCAAGTTTTTTTTTGCTTTGATCATTTGATTTGGATTTTGGAGTTAGCTCGGAATTTTGATTCATGAAATTCTGTCAATGAACGAACAAGCATACAACATGCCGGAGTATTTTGTGATTTGTAGTTTAGTTTAATTTGTTTGATTCTCAGATTAATCACTACTAACTACTATGATTTTCAAGTCCTTTCGAATCAGCAGGCTGTGCTGTTCTTTGTTAATGATTGACTAAAGTTTTTGATTCTCACATTGATTGTCAATGTTTACTGCGTAAAGTGAAATCTGAAAGATGTGTATGATTCGGAAATCATAGAATTCAGGAGTTTGTGTTGCGATTAGAGGTTTGCATATTGTTGAGAGGATTTTTTTGGATTCTTAGCAGTTTTATTGAATGTATACTTTAGAACTAGAAAATGATCATTATCTAGATCCTAGCTCCTGCTCCAAACTTGTCTTATACATATTATTTTCCAAAACTAGTAAAAAAATTATTTCATTTTTAGTAAGAAACAAAGTATTTTTGTATCCTGAATTCTTGATAATAAAGTTTATCTGAATTAGAAATAGAACAAGGTATTTATGTATCTGAAATGCAATATTGAATATTATACCAAAGGACTAATGTTGCTATACATAAATGTACATACCTTTCTGCTATATCTTAGGAATGCCTAAACTAATATGATAGTGTTTGTTTTAGAAATATCACATCTTAAGTTGTTTATGGATAGTAACATAGAGCTGAATGTGATGGTAGAAGGTATCTGGTGGATCAGTCTACATGCATACAAGTTGGCTTGGCCATCACCATGATAAAAGAACCTAAACTAGAATGCCTTCGTGTCTGCATGTTGCTTTAGGAGAATGCCCCGACTGGCAAAAGAATGTAGGATAGAAAGAACAAGGAAAAAACAGCAATTAAGAAATGTAGCTTAAGAGTGTTTCAATTTTTTTTCCTTTCCTTCATCTGTCTTTCTCTCGTCCTGATAGATCTAGTGATTTGCTTAAACATCTTTTGAAGTCGTCAACTAAATGCTCATATGATGGTTAATCTCTCAATACAATTTTCTACTGAATTTACTTTTCCTTTTCTTATGATTAGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGGTAAGAACCAAAACAGTGCCTAGACTCTGGGATTTATTTTACTGTATTATATGGTGCCAAATGTCTACCTGTACTCATGAGATCTGTACTAAAACTTTAGAACTCCATGATTTAAGAATGTTCAATTAGATCTCTTTATGCAATGGTGTGGATTATGTGCTTAAAAACAACTTAATCTATTGAAACCTCTAATTTACCTGATAACAAAAACACTACTTGATCTACATGATTATTGGTTGGTTTAACTAAAGGTGTGTCAATTTGATTTTCACCTGCATTTTAAGATGCATGACTTGTAAGGGAGAATGGATATGTCATAACTCAACCCCCAGAAGGAAAAAATTAGCTCATGATGTAAAGAATGTCTCAAGATCATTTAAGAAGACAATAACCCATTCCCTGGTCCAATATTTGATGCTAATACCTTCCCCACACGCCAAAATTTCTAGAGTGTGTATAACAGAACATTGGGGCCAACACTGGAAAACACAACTAGGTAGATGGCTATTAGACCATGTACTTTACTAAATCTGAGTGCTCTTTCACTAGATGAGGCTTCTCTACCACCACATTAGGAGACAATAACCCATTCCCTCATTGTAGCATAAGACCAGATTACATAGACTTTTTCTATGCAACAAGGTTAATATGTTAATATTGCACAACATTGAATCACTACCCGGAGAAGTGTCTAAGGCTCGTGAGTTCTGGAATTCGACATTACGATGTAACTACTGAAATCAGTTTTACAGATTAAAAGAGGAAAAAGACCCTACTGAAATCAAGTATTTCATAGGTATAATTTCTACTGTTGTTCCAATTAACTTGGTTGTCTCAGTTCTTTGCCGAAGAAACTTCATAAAGTATCTGGTTTTACTTGGATCCAATGGAAGATTGTAACTGTACATATCATGTTTCTACAGCTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGTAATCAGTGAATTTATACATTTTCATACCTTACAAGTGGGACTTTTGACTTCTGTCATTACATCATTCATCTTCACTGCTGTTTAACGCCATTCTGCCCTTTTCCACCATGATTGAACTAAGCATAATTCAGTGGTCATTTGGCCATGAATATTTTTTACTTTATTCTGGAAATCATGTTTGGCCATAATTTGAAATTAAGTTGAATTCCATAATTTGAAAAACCCCTCAAGTTTTCTTTTTTCATGAAGAACATCAAAAGATGTTCACTTTCAAATCACTCACAAAAATTCAAACACAACTCCAATTAGTAATCATGGACAAACACAATCATCTGCAATTTTATTTTTGATGCAGCAGTTGTTCATATTTGTTTATTGCATGTCCAAAAGTAGAATGACTTTTCTTGATTATACTGGTGAATGTTCGCTCTATTGGTTTTTGGAGCTTCTTCTCTTAGGTTAATGTCAATCTAATTGCCATCTGTTCTATTAAATGACAATTCTATGGCATGAAACTAGGCTCCCCTTCTTTGAATAATCTGATTAAACTTGAATAAATCTGGTTCCAGTGATAAGTTTTCATGATAATCTTCTGTAGTTTTTTTGGGTTGCTGGAGTTTTATCTGCCAAGAATAGAAATCAGGAATCCCAATCTATTTTCATAACAGCACTATAGAACTTCTCAGTGATGAAATTCTTGCTGATTATTGCCTCAGTCCTTTCTTACTGGCTCCTAGAGAGTAACGAACCACAAATACTAAATAGCGTCTGGGTTGATAAGGGAATCATATATCTTGCCTTTGACAGCTCTCAATCTCCATTAGTCGAACAAGGTTTGTGGGATGACTGATAGAAATTGTTCAGATTCAAAAAGGTGTCCATGTAGTTTTCAGATACATGACAAGAAAAGTAATTTTCTTATTTCATAATAAGAAGCATTTATCTGTGCTTTCTTTGTTGACACATTTCTACATTCCTCTTAGATGCTTTGTCTTCTCTAAATTTTTGAATGCATCTCTATCTATTATATTTAATTTGTTTATTTAAATTTTGTTTACAGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTT</genome_strand>
        <mrna_strand>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGGTTTCTTTTCCTTCTTACTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337660" ref_strand="-" ref_description="SGN-U337660        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G03530.1 | Symbol: None | Ras-related GTP-binding family protein, contains Pfam profile: PF00071 Ras family | chr5:885521-887389 REVERSE | Aliases: F12E4.310, F12E4_310 (evalue: 3e-45, score=178) genbank/nr: gi|1370172|emb|CAA98163.1| RAB1X [Lotus corniculatus var. japonicus](evalue: 3e-44, score=181)">
      <seq>aacctttttgatgggtgggcaaaagagggggagctgtatagtaataatcgggattgtgtaaagatggtggttggaaataaagttgacagagaatccgagagagttgtgaccagggaagaaggcattgctttagggaaggaactggggggtttattttttgaatgtagtgttaaaactggggaaaatgtgcaaaattgctttgaagagcttgccttaaagataaggggggggcttagtttccttgaagaaggatccactgtagggaagggaaattttttgaaacggaaacaagaacggcaaacccaacgggggggggggggttgctgctcatgataaaaaaaattgtgcattagatggtgcacatttcaaatatgtttatggtgttttttttttttttttactgttttttttttgggggtgctttgaaaggggttagtagtttcatgtaaagtaattgatggatgttggtcattgaccaatgtttttgttaatttttgccagattgctgtcaaattggggggtatttcataattttaatgggcatttcatcggtaaaaaaaaaaaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="+" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="102680" stop="104860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102980" g_stop="103069" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618">
            <donor d_prob="0.777" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103688" g_stop="103816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="219" r_length="129" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104225" g_stop="104559" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="554" r_length="335" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="607"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="+" ref_id="SGN-U337660" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337660" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102980" e_stop="103069"/>
          <exon e_start="103688" e_stop="103816"/>
          <exon e_start="104225" e_stop="104559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGTATGTTTTTTCTTGTAAAAATGAATATGCTTGCATCTCTCTCTTTCTCCAACTGTTCTCGATAATGGTGTTAAGTCCATCCAATTTGCTTGTTGAATATGCTAGGAGACATTATTTCATGGAGAAAATAAGTGAATTAAGAGTAGATATCACCTCTTCAAATGTGGTATACTTAAATTTTCTTGTGGAATCTGGGAACTTGCATGATGGCTATAAAGGAAGTCATGAAAACGATGATTAGTAGATCTTTGATCTGCTTTCTTTCCCAAATAGTTGTATTGCAGTTACAACATTTGATATGTTGAAGCAAATGTTTCCATAATGAAAAGCTATATGCAACTTAAACAGACCTCAAAAAAGAAAGAAAAACATAGAAAGGATGAGTTTGGATAATTTTTGGAGAATATATGCCTCAGGGAATGTACTATCCATCTTTTCTTATTGTTCTATTGCAGAATGAATTACAACAGAGTTAGAGGATGAGTTTGGTTACATCTTAATGCTTTCAGTGGGAGTATCTTTTATCGTTCTATTGCAGTCGATTGTTGGTGCTTGAATAAATTCTGCATGAAGTTTGTTAGCCAATTTTTGTTCTTACTTTACTATTGGTTTTATCAGGAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAGGTAAATGATATGTTGGTAACACAAGATATGTTGTTATCAAGTTTAGCATCATATGCTTAGTAACATGGTCTGCAGGTATTAATTTAGCATTATCTTTTTGATGAATCAAGTTGACCTTTTAGATCGAATACCCTCATAAAATATTATATTTTGATGTAGTGCTAAAACTCAGTCAGTAGATCAGTTCAATTTATTCTTTAAGATACATCGTGTTCAACACTTTCACATCCTAGACAGGTCAACAGTCCAATGTTCCCAGACTTGATATCCTTTAACTTCAAGCTTTGAGAAAATGTTTCAGTCCAACAGTTTTGATCTGGTTGATTCAAAACCGGATTCATTTGGTCAACTTATATCTTTCCAGGATTAATGTTTCCATCGATTTTCTAACTAGATTATCGTATTCAGATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</genome_strand>
        <mrna_strand>AACCTTTTTGATGGGTGGGCAAAAGAGGGGGAGCTGTATAGTAATAATCGGGATTGTGTAAAGATGGTGGTTGGAAATAAAGTTGACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGAGAGTTGTGACCAGGGAAGAAGGCATTGCTTTAGGGAAGGAACTGGGGGGTTTATTTTTTGAATGTAGTGTTAAAACTGGGGAAAATGTGCAAAATTGCTTTGAAGAGCTTGCCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGGGGGGGCTTAGTTTCCTTGAAGAAGGATCCACTGTAGGGAAGGGAAATTTTTTGAAACGGAAACAAGAACGGCAAACCCAACGGGGGGGGGGGGGTTGCTGCTCATGATAAAAAAAATTGTGCATTAGATGGTGCACATTTCAAATATGTTTATGGTGTTTTTTTTTTTTTTTTACTGTTTTTTTTTTGGGGGTGCTTTGAAAGGGGTTAGTAGTTTCATGTAAAGTAATTGATGGATGTTGGTCATTGACCAATGTTTTTGTTAATTTTTGCCAGATTGCTGTCAAATTGGGGGGTATTTCATAATTTTAATGGGCATTTCATCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346337" ref_strand="+" ref_description="SGN-U346337        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 | chr3:3032564-3034448 FORWARD | Aliases: F8A24.6(evalue: 3e-50, score=195) genbank/nr: gi|18398673|ref|NP_566360.1| expressed protein [Arabidopsis thaliana] gi|21554034|gb|AAM63115.1| unknown [Arabidopsis thaliana](evalue: 3e-48, score=195)">
      <seq>tttaatggaaacattgatgaacctctagaagatggggacactgctcttcatattacttgtctgtatggccatctggcatgtgtggagctactgttagagagaggagcttctgtggaggctaaggatgaagatggagcaattccattgcatgatgcttgtgctggaggatacacagaaatagcccgtctgctaatcaacaatgcacctgaccctgaatgcgtgaaaaggatgctggacacctttgatgaagaaggtgatgcgcctctccatcatgccgccagaggtgaacatttagatgtgatcagattattgatagcttcaggggcttctgcttgtaggaacaatttattaggaaggaccccatctgagcttgttgagcctgaaagtgaagcttgcataatcttagacgaagctataagtgctgaaatcggccgtccctataggtctacgtaaagaaaatttggacgctcggctattgtcgatatgtttccccttgttctgtaggtactagtgttatattagaaactcggatattatgcttgaatgttaaaatactctttatatagtgagattgcacattgcagtatgagaaatactcatcttttttgaagcgactgttaaatgattcatcaactagaattatagaatatggaaactttatttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0203J14-JQy9X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0203J14.1" temp_strand="-" temp_description="C09HBa0203J14.1  EF647607.1 htgs_phase:3 submitted_to_sgn_as:C09Hba0203J14 upload_account_name:spain">
        <position start="106333" stop="104481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106033" g_stop="105947" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105946" i_stop="105818" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105817" g_stop="105739" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="166" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105738" i_stop="105495" i_length="244">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105494" g_stop="105400" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105399" i_stop="105281" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105280" g_stop="105185" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105184" i_stop="105091" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105090" g_stop="104782" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="666" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="677"/>
      <MATCH_line gen_id="C09HBa0203J14.1" gen_strand="-" ref_id="SGN-U346337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0203J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106033" e_stop="105947"/>
          <exon e_start="105817" e_stop="105739"/>
          <exon e_start="105494" e_stop="105400"/>
          <exon e_start="105280" e_stop="105185"/>
          <exon e_start="105090" e_stop="104782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAGGTTGGTCCACTCTCTATTCTCAAGTCGGAAACAGTCCCTACAGCAGACATTACATTACGGTGGATCTTTGGTGTTGATTTCATTATCATGTTTTTGACTAATACTAATATAATATTGTTTTTGACTCAGCTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAGGTATACCATAAGTTTACCAGTGTTCCAAGTCCTTCATTGACGAATCTTTTCACCATAACGAGATGTAATAAACTAGTAAATTGTACAGTCAGGTTTTAAACGCATTTATTAAGCATTAAGTGAACTAACTACATTAACCGAGCCTTTTGAGGAAGTGAGGAGTAAGGGGATCAATGTAGGTTTCTGTTAAAAAGGAATCATAAGCTTGCATTTCTTACTTTCTGAATGCTGATTATTTCAACAGGATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCGGTGAGGCATTTCTACTAATATTTAACGCTATGCAAAGTTTCAATTATTTAAATATTGGAAATTAGTAAATGAAACAGCTACAGCACTTGTACTGATTGTATTTGTTGTAATTTTCATAGCCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGGGTAAGTGCAGCAAATACTCAAATTAGACTTTCTTTTTTTTTAATTTTATGTCTGATTAACTCAATTTGGCTCGATTGACTTGTGATTATCGCAGACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</genome_strand>
        <mrna_strand>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG.................................................................................................................................CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG....................................................................................................................................................................................................................................................GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG.......................................................................................................................CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG..............................................................................................ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13795" PGL_stop="14445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13795" e_stop="14302"/>
            <exon e_start="14412" e_stop="14445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.119" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="13795" e_stop="14302" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.119" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14303" i_stop="14411" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="14412" e_stop="14445" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13795" stop="14302"/>
              <exon start="14412" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346269" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGCTAAGAGATGAAAATTTTGAAGATAGGGTTAGAGGAAGAGGGATGATTATTAGAGGTTGGGCCCCACAAGTCCTAATATTATCTCATCCTTCCGTCGGAGGATTCTTAACACACTGTGGATGGAACTCAGCACTAGAAGGGATCTCTCGTGGCGTGCCAATGACTACTTTTCCTATGTTTGCCGAACAATTTTACAATGAGAAGTTTATCGTAAATATCTTGAAGACTGGAGTTGGAGTTGGTGTTGAAGTGAGTACTACCTCTTGGAATGAAGAGAAGAGTGGAGTATTGGTTAGCAAAGATGAAGTCAAAAGAGCAATAAATCAATTAATGGATCAAGGATTAGAGGGTGAAGAAAGAAGAAAAATAGCAAAGGATTTGTCACATATTTCAAAGAAGGCTATACAAGAAGAAGGTTCTTCATACTTGAATATCAAATTATTGATTGAAGATGTCATGCATGTACTCAAAAATAAAGAGGAAATTGAATAGATTTTGAAGA : TTGAAAAAGAAAAAAAAAAACTTAAAAGTGTAGA</gDNA_template>
            <first_frame> K  W  L  R  D  E  N  F  E  D  R  V  R  G  R  G  M  I  I  R  G  W  A  P  Q  V  L  I  L  S  H  P  S  V  G  G  F  L  T  H  C  G  W  N  S  A  L  E  G  I  S  R  G  V  P  M  T  T  F  P  M  F  A  E  Q  F  Y  N  E  K  F  I  V  N  I  L  K  T  G  V  G  V  G  V  E  V  S  T  T  S  W  N  E  E  K  S  G  V  L  V  S  K  D  E  V  K  R  A  I  N  Q  L  M  D  Q  G  L  E  G  E  E  R  R  K  I  A  K  D  L  S  H  I  S  K  K  A  I  Q  E  E  G  S  S  Y  L  N  I  K  L  L  I  E  D  V  M  H  V  L  K  N  K  E  E  I  E  *  I  L  K   : I  E  K  E  K  K  K  L  K  S  V   </first_frame>
            <second_frame>  N  G  *  E  M  K  I  L  K  I  G  L  E  E  E  G  *  L  L  E  V  G  P  H  K  S  *  Y  Y  L  I  L  P  S  E  D  S  *  H  T  V  D  G  T  Q  H  *  K  G  S  L  V  A  C  Q  *  L  L  F  L  C  L  P  N  N  F  T  M  R  S  L  S  *  I  S  *  R  L  E  L  E  L  V  L  K  *  V  L  P  L  G  M  K  R  R  V  E  Y  W  L  A  K  M  K  S  K  E  Q  *  I  N  *  W  I  K  D  *  R  V  K  K  E  E  K  *  Q  R  I  C  H  I  F  Q  R  R  L  Y  K  K  K  V  L  H  T  *  I  S  N  Y  *  L  K  M  S  C  M  Y  S  K  I  K  R  K  L  N  R  F  *  R  :  L  K  K  K  K  K  N  L  K  V  *  </second_frame>
            <third_frame>   M  A  K  R  *  K  F  *  R  *  G  *  R  K  R  D  D  Y  *  R  L  G  P  T  S  P  N  I  I  S  S  F  R  R  R  I  L  N  T  L  W  M  E  L  S  T  R  R  D  L  S  W  R  A  N  D  Y  F  S  Y  V  C  R  T  I  L  Q  *  E  V  Y  R  K  Y  L  E  D  W  S  W  S  W  C  *  S  E  Y  Y  L  L  E  *  R  E  E  W  S  I  G  *  Q  R  *  S  Q  K  S  N  K  S  I  N  G  S  R  I  R  G  *  R  K  K  K  N  S  K  G  F  V  T  Y  F  K  E  G  Y  T  R  R  R  F  F  I  L  E  Y  Q  I  I  D  *  R  C  H  A  C  T  Q  K  *  R  G  N  *  I  D  F  E  D :   *  K  R  K  K  K  T  *  K  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13795" stop="14292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLRDENFEDRVRGRGMIIRGWAPQVLILSHPSVGGFLTHCGWNSALEGISRGVPMTTFPMFAEQFYNEKFIVNILKTGVGVGVEVSTTSWNEEKSGVLVSKDEVKRAINQLMDQGLEGEERRKIAKDLSHISKKAIQEEGSSYLNIKLLIEDVMHVLKNKEEIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30551" PGL_stop="27816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30551" e_stop="30495"/>
            <exon e_start="29789" e_stop="29691"/>
            <exon e_start="28894" e_stop="28823"/>
            <exon e_start="28746" e_stop="28661"/>
            <exon e_start="28585" e_stop="28492"/>
            <exon e_start="27902" e_stop="27816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.892" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30551" e_stop="30495" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.698">
            <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29789" e_stop="29691" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28894" e_stop="28823" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.747">
            <gDNA_intron_boundary i_start="28822" i_stop="28747" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28746" e_stop="28661" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28660" i_stop="28586" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28585" e_stop="28492" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.892">
            <gDNA_intron_boundary i_start="28491" i_stop="27903" i_length="589"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="27902" e_stop="27816" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30551" stop="30495"/>
              <exon start="29789" stop="29691"/>
              <exon start="28894" stop="28823"/>
              <exon start="28746" stop="28661"/>
              <exon start="28585" stop="28492"/>
              <exon start="27902" stop="27816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA : GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG : GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGA : AACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCG : AGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAG : GCATTTGATGCTCCTTGGCCAGTTGTCCAGGCAAATGCGGTTTATTTATGCAGCAGCGTGCTTTCTCTCTCCGATGATAAACACATA</gDNA_template>
            <first_frame> R  D  A  V  E  P  V  L  L  N  L  S  I  R  L  R  N  L  Q  :  E  C  M  N  E  K  I  R  A  N  A  Y  A  A  F  G  A  L  S  T  Y  G  S  G  P  Q  Q  D  S  F  L  E  Q  :  A  H  A  A  F  P  R  M  V  L  H  L  H  E  D  D  L  S  V  R  Q  A  C  R  :  N  T  L  K  S  I  A  P  L  M  E  I  D  G  I  T  A  V  F  N  S  H  W  F  S  S  D  H  R :   G  D  Y  E  D  F  L  R  E  L  A  R  Q  L  T  Q  N  L  A  A  R  V  D  R  Y  M  A  S  I  I  Q  :  A  F  D  A  P  W  P  V  V  Q  A  N  A  V  Y  L  C  S  S  V  L  S  L  S  D  D  K  H  I </first_frame>
            <second_frame>  G  M  Q  L  N  L  F  S  *  T  F  L  Y  V  F  G  I  S  K :   S  A  *  M  R  R  Y  E  P  M  L  M  R  H  L  E  H  *  A  L  T  D  L  G  L  S  K  T  L  F  L  S  R :   L  M  L  L  S  H  G  W  F  Y  I  Y  M  R  M  I  L  V  *  D  K  L  A  E :   T  L  *  N  P  L  L  P  *  W  K  L  M  E  *  L  L  F  S  T  V  T  G  L  V  R  T  I   : E  A  T  M  K  T  F  F  E  N  L  Q  G  N  *  L  K  I  L  L  P  E  *  I  G  T  W  H  Q  *  Y  R :   H  L  M  L  L  G  Q  L  S  R  Q  M  R  F  I  Y  A  A  A  C  F  L  S  P  M  I  N  T   </second_frame>
            <third_frame>   G  C  S  *  T  C  S  P  E  P  F  Y  T  S  S  E  S  P   : R  V  H  E  *  E  D  T  S  Q  C  L  C  G  I  W  S  T  E  H  L  R  I  W  A  S  A  R  L  F  S  *  A   : G  S  C  C  F  P  T  D  G  F  T  S  T  *  G  *  S  *  C  E  T  S  L  P   : K  H  F  E  I  H  C  S  L  D  G  N  *  W  N  N  C  C  F  Q  Q  S  L  V  *  F  G  P  S  :  R  R  L  *  R  L  S  S  R  T  C  K  A  T  N  S  K  S  C  C  P  S  R  *  V  H  G  I  N  N  T   : G  I  *  C  S  L  A  S  C  P  G  K  C  G  L  F  M  Q  Q  R  A  F  S  L  R  *  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30551" stop="30495"/>
                    <exon start="29789" stop="29691"/>
                    <exon start="28894" stop="28823"/>
                    <exon start="28746" stop="28661"/>
                    <exon start="28585" stop="28492"/>
                    <exon start="27902" stop="27816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDAVEPVLLNLSIRLRNLQECMNEKIRANAYAAFGALSTYGSGPQQDSFLEQAHAAFPRMVLHLHEDDLSVRQACRNTLKSIAPLMEIDGITAVFNSHWFSSDHRGDYEDFLRELARQLTQNLAARVDRYMASIIQAFDAPWPVVQANAVYLCSSVLSLSDDKHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30551" e_stop="30495"/>
            <exon e_start="29789" e_stop="29691"/>
            <exon e_start="28894" e_stop="28211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30551" e_stop="30495" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.698">
            <gDNA_intron_boundary i_start="30494" i_stop="29790" i_length="705"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29789" e_stop="29691" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29690" i_stop="28895" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28894" e_stop="28211" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30551" stop="30495"/>
              <exon start="29789" stop="29691"/>
              <exon start="28894" stop="28211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGATGCAGTTGAACCTGTTCTCCTGAACCTTTCTATACGTCTTCGGAATCTCCAA : GAGTGCATGAATGAGAAGATACGAGCCAATGCTTATGCGGCATTTGGAGCACTGAGCACTTACGGATCTGGGCCTCAGCAAGACTCTTTTCTTGAGCAG : GCTCATGCTGCTTTCCCACGGATGGTTTTACATCTACATGAGGATGATCTTAGTGTGAGACAAGCTTGCCGAGTAAGTTTAATCTGCCAGATTTTTTTTTCTTATATTGTTCAGGATGGCTTTATGAGTTAACTCTTCAACACGCCAGAACACTTTGAAATCCATTGCTCCCTTGATGGAAATTGATGGAATAACTGCTGTTTTCAACAGTCACTGGTTTAGTTCGGACCATCGGTATGAACCCATTGACTTGATCAGTCCTTAATGGTTATTCATGAGTAATGATATTGAGTTGCCTTCAATTTTTAGAGGCGACTATGAAGACTTTCTTCGAGAACTTGCAAGGCAACTAACTCAAAATCTTGCTGCCCGAGTAGATAGGTACATGGCATCAATAATACAGGTCCGTATTCTTTTTTCTAATCTTGCATTTGGAGAAACTTTGAAGGTATGCATGTCTTTGTATTGAAATGCCATTAAATTCAGCGCTATGATGAAATTGGTACGAGAAAAAAAAGTTATGAATTTCCTACCATTCAAAAGTAAACGCAGTTCCCCTAAGAAGCTGGTGGGTTTCATAGAATCATATTCATACTAAAATAGCTGTCAAATTTTGGTGTTATAAAATTTTCAAGTGCTTGAATTTCCGAATCTTCAGAAAGTAGTAGTAGGCATACTTCCATG</gDNA_template>
            <first_frame> R  D  A  V  E  P  V  L  L  N  L  S  I  R  L  R  N  L  Q  :  E  C  M  N  E  K  I  R  A  N  A  Y  A  A  F  G  A  L  S  T  Y  G  S  G  P  Q  Q  D  S  F  L  E  Q  :  A  H  A  A  F  P  R  M  V  L  H  L  H  E  D  D  L  S  V  R  Q  A  C  R  V  S  L  I  C  Q  I  F  F  S  Y  I  V  Q  D  G  F  M  S  *  L  F  N  T  P  E  H  F  E  I  H  C  S  L  D  G  N  *  W  N  N  C  C  F  Q  Q  S  L  V  *  F  G  P  S  V  *  T  H  *  L  D  Q  S  L  M  V  I  H  E  *  *  Y  *  V  A  F  N  F  *  R  R  L  *  R  L  S  S  R  T  C  K  A  T  N  S  K  S  C  C  P  S  R  *  V  H  G  I  N  N  T  G  P  Y  S  F  F  *  S  C  I  W  R  N  F  E  G  M  H  V  F  V  L  K  C  H  *  I  Q  R  Y  D  E  I  G  T  R  K  K  S  Y  E  F  P  T  I  Q  K  *  T  Q  F  P  *  E  A  G  G  F  H  R  I  I  F  I  L  K  *  L  S  N  F  G  V  I  K  F  S  S  A  *  I  S  E  S  S  E  S  S  S  R  H  T  S  M </first_frame>
            <second_frame>  G  M  Q  L  N  L  F  S  *  T  F  L  Y  V  F  G  I  S  K :   S  A  *  M  R  R  Y  E  P  M  L  M  R  H  L  E  H  *  A  L  T  D  L  G  L  S  K  T  L  F  L  S  R :   L  M  L  L  S  H  G  W  F  Y  I  Y  M  R  M  I  L  V  *  D  K  L  A  E  *  V  *  S  A  R  F  F  F  L  I  L  F  R  M  A  L  *  V  N  S  S  T  R  Q  N  T  L  K  S  I  A  P  L  M  E  I  D  G  I  T  A  V  F  N  S  H  W  F  S  S  D  H  R  Y  E  P  I  D  L  I  S  P  *  W  L  F  M  S  N  D  I  E  L  P  S  I  F  R  G  D  Y  E  D  F  L  R  E  L  A  R  Q  L  T  Q  N  L  A  A  R  V  D  R  Y  M  A  S  I  I  Q  V  R  I  L  F  S  N  L  A  F  G  E  T  L  K  V  C  M  S  L  Y  *  N  A  I  K  F  S  A  M  M  K  L  V  R  E  K  K  V  M  N  F  L  P  F  K  S  K  R  S  S  P  K  K  L  V  G  F  I  E  S  Y  S  Y  *  N  S  C  Q  I  L  V  L  *  N  F  Q  V  L  E  F  P  N  L  Q  K  V  V  V  G  I  L  P   </second_frame>
            <third_frame>   G  C  S  *  T  C  S  P  E  P  F  Y  T  S  S  E  S  P   : R  V  H  E  *  E  D  T  S  Q  C  L  C  G  I  W  S  T  E  H  L  R  I  W  A  S  A  R  L  F  S  *  A   : G  S  C  C  F  P  T  D  G  F  T  S  T  *  G  *  S  *  C  E  T  S  L  P  S  K  F  N  L  P  D  F  F  F  L  Y  C  S  G  W  L  Y  E  L  T  L  Q  H  A  R  T  L  *  N  P  L  L  P  *  W  K  L  M  E  *  L  L  F  S  T  V  T  G  L  V  R  T  I  G  M  N  P  L  T  *  S  V  L  N  G  Y  S  *  V  M  I  L  S  C  L  Q  F  L  E  A  T  M  K  T  F  F  E  N  L  Q  G  N  *  L  K  I  L  L  P  E  *  I  G  T  W  H  Q  *  Y  R  S  V  F  F  F  L  I  L  H  L  E  K  L  *  R  Y  A  C  L  C  I  E  M  P  L  N  S  A  L  *  *  N  W  Y  E  K  K  K  L  *  I  S  Y  H  S  K  V  N  A  V  P  L  R  S  W  W  V  S  *  N  H  I  H  T  K  I  A  V  K  F  W  C  Y  K  I  F  K  C  L  N  F  R  I  F  R  K  *  *  *  A  Y  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30551" stop="30495"/>
                    <exon start="29789" stop="29691"/>
                    <exon start="28894" stop="28763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDAVEPVLLNLSIRLRNLQECMNEKIRANAYAAFGALSTYGSGPQQDSFLEQAHAAFPRMVLHLHEDDLSVRQACRVSLICQIFFSYIVQDGFMS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28629" stop="28426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLFMSNDIELPSIFRGDYEDFLRELARQLTQNLAARVDRYMASIIQVRILFSNLAFGETLKVCMSLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="81673" PGL_stop="89323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81673" e_stop="81971"/>
            <exon e_start="83217" e_stop="83384"/>
            <exon e_start="84020" e_stop="84185"/>
            <exon e_start="85150" e_stop="85260"/>
            <exon e_start="86100" e_stop="86287"/>
            <exon e_start="87237" e_stop="87394"/>
            <exon e_start="87927" e_stop="88086"/>
            <exon e_start="88529" e_stop="89323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.386" acc_prob="0.869" e_score="0.977"/>
          <exon-intron don_prob="0.872" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="81673" e_stop="81971" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.386" acc_prob="0.869">
            <gDNA_intron_boundary i_start="81972" i_stop="83216" i_length="1245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83217" e_stop="83384" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83385" i_stop="84019" i_length="635"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84020" e_stop="84185" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.680">
            <gDNA_intron_boundary i_start="84186" i_stop="85149" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85150" e_stop="85260" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="85261" i_stop="86099" i_length="839"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86100" e_stop="86287" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86288" i_stop="87236" i_length="949"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87237" e_stop="87394" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87395" i_stop="87926" i_length="532"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87927" e_stop="88086" e_length="160"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="88087" i_stop="88528" i_length="442"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88529" e_stop="89323" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81673" stop="81971"/>
              <exon start="83217" stop="83384"/>
              <exon start="84020" stop="84185"/>
              <exon start="85150" stop="85260"/>
              <exon start="86100" stop="86287"/>
              <exon start="87237" stop="87394"/>
              <exon start="87927" stop="88086"/>
              <exon start="88529" stop="89323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACCTACAAATGTTTCTCTGGAAAGACGATGGAGTCTTGAAGTAGCCATTGAGAAAGTTATTGGTCATAATTTAGATGGAGACATGGAGGATGCTATGAGTGCTCCAATTTTGGAAAGAGAGTACATGCAAGGCATCCTAATCAGTGAGGTTGTCTTAAATGAGCGTTTTTCACCACCATCTGGGAGAGCCAGAAGGAGGCAAAAGAGATTTGTAAGGGAATTAAAGAGACCAGGTGAAGCAATCATAAAGGGTCACAGGAGTTATGATTTAATGCTAAGTCTACAGCTTGGGATTAG : ATACACTGTGGGGAAAATTACACCTATACAAAGACGAGATATACGAACTTCAGATTTTGGTCCACGTGCTAGCTTTTGGATGTATTTTCCAAAAGGAGGATCTCAGTTGACACCTACACACCAGTCTGAAGATTTCAAGTGGAAAGATTATTGCCCAATGGTCTTCAG : GAATCTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATGTCAATTTGTGGAAATGATGCCCTTAGAGAGCTTTCTTCTCCTGGAAAAAGTGGCAGTGTATTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACATTACGTAAATCTGAAGTTAAG : GTTTTGCTGCGGATGCTTCCGAATTATCATCGCCATGTCAAGACATATGAGAATACTCTCATCACTAAATTTTTTGGACTTCACAGGATAAAACCTTCCAGTGGACAAAAG : TTCCGCTTTGTAGTAATGGGAAATATGTTTTGTACGGAGTTGAGAATCCACCGAAGATTTGATCTTAAAGGTTCTTCACTAGGACGATCTGCTGATAAGGTTGAAATTGACGAGAACACTATACTTAAGGATCTAGATTTGAACTACTGCTTTTATCTAGAGCCTTCTTGGCGCGAAGCTTTATTAAG : GCAGATCGAAATTGACAGTAAATTCTTGGAGGAAGAGAACATTATGGATTACAGCCTCTTGTTAGGTGTTCATTATAGAGCACCTCAACACCTACAATCTCTCATTTCGTGTAGTGGACGCACCACGGCAGATGGACTAGAAATTGTTGCAGAAGAAG : AGTCTCTGGAGGATGAAATATCGCCCCAGGGCCTTGTTTTGGTCCCACGTGGAAGTGATGATAGTGTCGTTGTGGGTCCGCATGTCAGAGGCAGCCGATTACGAGCGTCATCTGCTACCGGTGACGCGGAAGTGGACCTCCTCCTCCCCGGGACAGCAAG : ATTCCAAATTCAGCTTGGGGTGAATATGCCAGCAAGGGCGGAGTACATACCAAAAGAAGGTGAAACACAGGTGTTCCACGAAGTATATGACGTTGTGTTATACCTGGGGATCATTGATATATTGCAAGAATACAACATGAGCAAGAAGTTAGAACATGCATACAAATCGATTCAGTTTGATTCTGTTTCCATTTCTGCAGTTGACCCAACGTACTACTCGGAGAGGTTCTTGGAGTTCATTCGAAAGGTCTTCCCTACATATGCTGTAGCAACTTGAACAGTATCCTTAGCTGTTAGCGGTTACCATGGCAGAGACACACAGCTGCTGTTTGTAATTTATTGAAGAGTGTATAATGCGGATTATGGATTTGTAGTTGATAGCAATTTCTTTACAAGTTGTTGAATCCAAAATCATAGCAGACGATTGATGTGTTAAAAAGATAGCTTGTATACACCTAAAACAGAGATTTTAGAAGTTGCTTTTTTTTAATCTTAGGATCTGAAAAGCAATAAGCTGCTTTTAAAATGGTATTCTATTACATTCTCAAAAGCCTTCAAAGATAAACGAGTCGGCCTAACAGATACAACAGTTTCTGGCAACATAAATGATTTTGAAAGATTTAAATGGACGAAAACCACAAACTCAAAAATCAGCACGAAAAGTCGAATTTTCGTACCATGCAATTAAAGGTAGGTTCTATGACTTCGGTTCATCAACCCATGTTGGGTGGTGGAGGTGGTGGGCGCATTCCTTGGCCTTGCATCTGTTGTTGACCTGGAAAACCTTGTGGAGGC</gDNA_template>
            <first_frame> R  P  T  N  V  S  L  E  R  R  W  S  L  E  V  A  I  E  K  V  I  G  H  N  L  D  G  D  M  E  D  A  M  S  A  P  I  L  E  R  E  Y  M  Q  G  I  L  I  S  E  V  V  L  N  E  R  F  S  P  P  S  G  R  A  R  R  R  Q  K  R  F  V  R  E  L  K  R  P  G  E  A  I  I  K  G  H  R  S  Y  D  L  M  L  S  L  Q  L  G  I  R :   Y  T  V  G  K  I  T  P  I  Q  R  R  D  I  R  T  S  D  F  G  P  R  A  S  F  W  M  Y  F  P  K  G  G  S  Q  L  T  P  T  H  Q  S  E  D  F  K  W  K  D  Y  C  P  M  V  F  R :   N  L  R  E  M  F  K  I  D  A  A  D  Y  M  M  S  I  C  G  N  D  A  L  R  E  L  S  S  P  G  K  S  G  S  V  F  F  L  S  Q  D  D  R  F  M  I  K  T  L  R  K  S  E  V  K  :  V  L  L  R  M  L  P  N  Y  H  R  H  V  K  T  Y  E  N  T  L  I  T  K  F  F  G  L  H  R  I  K  P  S  S  G  Q  K  :  F  R  F  V  V  M  G  N  M  F  C  T  E  L  R  I  H  R  R  F  D  L  K  G  S  S  L  G  R  S  A  D  K  V  E  I  D  E  N  T  I  L  K  D  L  D  L  N  Y  C  F  Y  L  E  P  S  W  R  E  A  L  L  R :   Q  I  E  I  D  S  K  F  L  E  E  E  N  I  M  D  Y  S  L  L  L  G  V  H  Y  R  A  P  Q  H  L  Q  S  L  I  S  C  S  G  R  T  T  A  D  G  L  E  I  V  A  E  E   : E  S  L  E  D  E  I  S  P  Q  G  L  V  L  V  P  R  G  S  D  D  S  V  V  V  G  P  H  V  R  G  S  R  L  R  A  S  S  A  T  G  D  A  E  V  D  L  L  L  P  G  T  A  R :   F  Q  I  Q  L  G  V  N  M  P  A  R  A  E  Y  I  P  K  E  G  E  T  Q  V  F  H  E  V  Y  D  V  V  L  Y  L  G  I  I  D  I  L  Q  E  Y  N  M  S  K  K  L  E  H  A  Y  K  S  I  Q  F  D  S  V  S  I  S  A  V  D  P  T  Y  Y  S  E  R  F  L  E  F  I  R  K  V  F  P  T  Y  A  V  A  T  *  T  V  S  L  A  V  S  G  Y  H  G  R  D  T  Q  L  L  F  V  I  Y  *  R  V  Y  N  A  D  Y  G  F  V  V  D  S  N  F  F  T  S  C  *  I  Q  N  H  S  R  R  L  M  C  *  K  D  S  L  Y  T  P  K  T  E  I  L  E  V  A  F  F  *  S  *  D  L  K  S  N  K  L  L  L  K  W  Y  S  I  T  F  S  K  A  F  K  D  K  R  V  G  L  T  D  T  T  V  S  G  N  I  N  D  F  E  R  F  K  W  T  K  T  T  N  S  K  I  S  T  K  S  R  I  F  V  P  C  N  *  R  *  V  L  *  L  R  F  I  N  P  C  W  V  V  E  V  V  G  A  F  L  G  L  A  S  V  V  D  L  E  N  L  V  E   </first_frame>
            <second_frame>  D  L  Q  M  F  L  W  K  D  D  G  V  L  K  *  P  L  R  K  L  L  V  I  I  *  M  E  T  W  R  M  L  *  V  L  Q  F  W  K  E  S  T  C  K  A  S  *  S  V  R  L  S  *  M  S  V  F  H  H  H  L  G  E  P  E  G  G  K  R  D  L  *  G  N  *  R  D  Q  V  K  Q  S  *  R  V  T  G  V  M  I  *  C  *  V  Y  S  L  G  L   : D  T  L  W  G  K  L  H  L  Y  K  D  E  I  Y  E  L  Q  I  L  V  H  V  L  A  F  G  C  I  F  Q  K  E  D  L  S  *  H  L  H  T  S  L  K  I  S  S  G  K  I  I  A  Q  W  S  S   : G  I  *  G  R  C  S  R  L  M  L  L  I  T  *  C  Q  F  V  E  M  M  P  L  E  S  F  L  L  L  E  K  V  A  V  Y  F  S  C  L  K  M  T  V  S  *  L  R  H  Y  V  N  L  K  L  R :   F  C  C  G  C  F  R  I  I  I  A  M  S  R  H  M  R  I  L  S  S  L  N  F  L  D  F  T  G  *  N  L  P  V  D  K  S :   S  A  L  *  *  W  E  I  C  F  V  R  S  *  E  S  T  E  D  L  I  L  K  V  L  H  *  D  D  L  L  I  R  L  K  L  T  R  T  L  Y  L  R  I  *  I  *  T  T  A  F  I  *  S  L  L  G  A  K  L  Y  *   : G  R  S  K  L  T  V  N  S  W  R  K  R  T  L  W  I  T  A  S  C  *  V  F  I  I  E  H  L  N  T  Y  N  L  S  F  R  V  V  D  A  P  R  Q  M  D  *  K  L  L  Q  K  K  :  S  L  W  R  M  K  Y  R  P  R  A  L  F  W  S  H  V  E  V  M  I  V  S  L  W  V  R  M  S  E  A  A  D  Y  E  R  H  L  L  P  V  T  R  K  W  T  S  S  S  P  G  Q  Q   : D  S  K  F  S  L  G  *  I  C  Q  Q  G  R  S  T  Y  Q  K  K  V  K  H  R  C  S  T  K  Y  M  T  L  C  Y  T  W  G  S  L  I  Y  C  K  N  T  T  *  A  R  S  *  N  M  H  T  N  R  F  S  L  I  L  F  P  F  L  Q  L  T  Q  R  T  T  R  R  G  S  W  S  S  F  E  R  S  S  L  H  M  L  *  Q  L  E  Q  Y  P  *  L  L  A  V  T  M  A  E  T  H  S  C  C  L  *  F  I  E  E  C  I  M  R  I  M  D  L  *  L  I  A  I  S  L  Q  V  V  E  S  K  I  I  A  D  D  *  C  V  K  K  I  A  C  I  H  L  K  Q  R  F  *  K  L  L  F  F  N  L  R  I  *  K  A  I  S  C  F  *  N  G  I  L  L  H  S  Q  K  P  S  K  I  N  E  S  A  *  Q  I  Q  Q  F  L  A  T  *  M  I  L  K  D  L  N  G  R  K  P  Q  T  Q  K  S  A  R  K  V  E  F  S  Y  H  A  I  K  G  R  F  Y  D  F  G  S  S  T  H  V  G  W  W  R  W  W  A  H  S  L  A  L  H  L  L  L  T  W  K  T  L  W  R  </second_frame>
            <third_frame>   T  Y  K  C  F  S  G  K  T  M  E  S  *  S  S  H  *  E  S  Y  W  S  *  F  R  W  R  H  G  G  C  Y  E  C  S  N  F  G  K  R  V  H  A  R  H  P  N  Q  *  G  C  L  K  *  A  F  F  T  T  I  W  E  S  Q  K  E  A  K  E  I  C  K  G  I  K  E  T  R  *  S  N  H  K  G  S  Q  E  L  *  F  N  A  K  S  T  A  W  D  *  :  I  H  C  G  E  N  Y  T  Y  T  K  T  R  Y  T  N  F  R  F  W  S  T  C  *  L  L  D  V  F  S  K  R  R  I  S  V  D  T  Y  T  P  V  *  R  F  Q  V  E  R  L  L  P  N  G  L  Q  :  E  S  E  G  D  V  Q  D  *  C  C  *  L  H  D  V  N  L  W  K  *  C  P  *  R  A  F  F  S  W  K  K  W  Q  C  I  F  P  V  S  R  *  P  F  H  D  *  D  I  T  *  I  *  S  *   : G  F  A  A  D  A  S  E  L  S  S  P  C  Q  D  I  *  E  Y  S  H  H  *  I  F  W  T  S  Q  D  K  T  F  Q  W  T  K   : V  P  L  C  S  N  G  K  Y  V  L  Y  G  V  E  N  P  P  K  I  *  S  *  R  F  F  T  R  T  I  C  *  *  G  *  N  *  R  E  H  Y  T  *  G  S  R  F  E  L  L  L  L  S  R  A  F  L  A  R  S  F  I  K  :  A  D  R  N  *  Q  *  I  L  G  G  R  E  H  Y  G  L  Q  P  L  V  R  C  S  L  *  S  T  S  T  P  T  I  S  H  F  V  *  W  T  H  H  G  R  W  T  R  N  C  C  R  R  R :   V  S  G  G  *  N  I  A  P  G  P  C  F  G  P  T  W  K  *  *  *  C  R  C  G  S  A  C  Q  R  Q  P  I  T  S  V  I  C  Y  R  *  R  G  S  G  P  P  P  P  R  D  S  K  :  I  P  N  S  A  W  G  E  Y  A  S  K  G  G  V  H  T  K  R  R  *  N  T  G  V  P  R  S  I  *  R  C  V  I  P  G  D  H  *  Y  I  A  R  I  Q  H  E  Q  E  V  R  T  C  I  Q  I  D  S  V  *  F  C  F  H  F  C  S  *  P  N  V  L  L  G  E  V  L  G  V  H  S  K  G  L  P  Y  I  C  C  S  N  L  N  S  I  L  S  C  *  R  L  P  W  Q  R  H  T  A  A  V  C  N  L  L  K  S  V  *  C  G  L  W  I  C  S  *  *  Q  F  L  Y  K  L  L  N  P  K  S  *  Q  T  I  D  V  L  K  R  *  L  V  Y  T  *  N  R  D  F  R  S  C  F  F  L  I  L  G  S  E  K  Q  *  A  A  F  K  M  V  F  Y  Y  I  L  K  S  L  Q  R  *  T  S  R  P  N  R  Y  N  S  F  W  Q  H  K  *  F  *  K  I  *  M  D  E  N  H  K  L  K  N  Q  H  E  K  S  N  F  R  T  M  Q  L  K  V  G  S  M  T  S  V  H  Q  P  M  L  G  G  G  G  G  G  R  I  P  W  P  C  I  C  C  *  P  G  K  P  C  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81673" stop="81971"/>
                    <exon start="83217" stop="83384"/>
                    <exon start="84020" stop="84185"/>
                    <exon start="85150" stop="85260"/>
                    <exon start="86100" stop="86287"/>
                    <exon start="87237" stop="87394"/>
                    <exon start="87927" stop="88086"/>
                    <exon start="88529" stop="88805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPTNVSLERRWSLEVAIEKVIGHNLDGDMEDAMSAPILEREYMQGILISEVVLNERFSPPSGRARRRQKRFVRELKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPIQRRDIRTSDFGPRASFWMYFPKGGSQLTPTHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHRHVKTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTILKDLDLNYCFYLEPSWREALLRQIEIDSKFLEEENIMDYSLLLGVHYRAPQHLQSLISCSGRTTADGLEIVAEEESLEDEISPQGLVLVPRGSDDSVVVGPHVRGSRLRASSATGDAEVDLLLPGTARFQIQLGVNMPARAEYIPKEGETQVFHEVYDVVLYLGIIDILQEYNMSKKLEHAYKSIQFDSVSISAVDPTYYSERFLEFIRKVFPTYAVAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="93477" PGL_stop="88997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93477" e_stop="93151"/>
            <exon e_start="92048" e_stop="91972"/>
            <exon e_start="90251" e_stop="90186"/>
            <exon e_start="90025" e_stop="89951"/>
            <exon e_start="89852" e_stop="89778"/>
            <exon e_start="89664" e_stop="88997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93477" e_stop="93151" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.590">
            <gDNA_intron_boundary i_start="93150" i_stop="92049" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92048" e_stop="91972" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91971" i_stop="90252" i_length="1720"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90251" e_stop="90186" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.883">
            <gDNA_intron_boundary i_start="90185" i_stop="90026" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90025" e_stop="89951" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89950" i_stop="89853" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89852" e_stop="89778" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.958">
            <gDNA_intron_boundary i_start="89777" i_stop="89665" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="89664" e_stop="88997" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93477" stop="93151"/>
              <exon start="92048" stop="91972"/>
              <exon start="90251" stop="90186"/>
              <exon start="90025" stop="89951"/>
              <exon start="89852" stop="89778"/>
              <exon start="89664" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGCGCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGACGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTAAGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATG : TTAAAATTGGTAGGCCTGGCTACCGAGTGACCAAGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAG : ATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGATTCATGTCCTCATTCGAGCAG : AAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCATTTAAG : GTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACT : TTGCAGTTATACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTCTACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTGGATCAATGCCTCCACCCCCTCCCCTTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCGTTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAACAGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGGTACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGTTGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATCCTAAGATTAAAAAAAAGCAACTTCTAAA</gDNA_template>
            <first_frame> T  K  W  T  E  N  G  V  R  S  R  E  A  A  A  P  P  L  P  R  T  R  Q  S  T  A  V  S  G  C  A  G  W  L  *  K  P  *  T  S  Q  K  I  L  I  S  C  E  I  I  S  E  A  M  N  V  S  F  A  *  R  Y  T  T  M  K  G  I  T  W  L  T  L  K  E  N  G  I  R  L  I  *  L  K  E  L  L  V  K  L  R  M  L  L  L  N  L  S  L  I  S  A  K  L  L  S  K  E  M  :  L  K  L  V  G  L  A  T  E  *  P  S  N  L  I  R  K  Q  N  K  D  L  F  Y  S  R :   L  N  I  L  R  L  K  T  T  Q  S  Q  G  T  D  S  C  P  H  S  S  R :   K  S  N  H  L  T  K  D  I  S  F  F  C  L  L  L  N  H  M  R  S  F  H  L  R :   F  Q  A  L  R  L  T  N  Q  L  P  S  F  S  R  I  G  I  Q  I  R  K  C  S  L :   C  S  Y  T  S  R  L  S  H  W  R  L  T  S  H  Q  L  L  L  Q  T  T  G  C  Q  H  Q  V  P  H  P  G  L  Y  L  H  H  P  K  L  H  L  H  L  H  H  K  V  F  L  L  E  L  Q  I  L  H  P  E  A  H  H  L  D  Q  C  L  H  P  L  P  L  W  V  T  D  L  D  L  C  H  Q  E  V  T  Y  L  P  H  H  L  L  P  L  V  V  E  L  W  L  I  S  L  Q  V  D  T  W  V  D  L  Q  *  C  L  H  K  V  F  Q  V  N  N  R  C  K  A  K  E  C  A  H  H  L  H  H  P  T  W  V  D  E  P  K  S  *  N  L  P  L  I  A  W  Y  E  N  S  T  F  R  A  D  F  *  V  C  G  F  R  P  F  K  S  F  K  I  I  Y  V  A  R  N  C  C  I  C  *  A  D  S  F  I  F  E  G  F  *  E  C  N  R  I  P  F  *  K  Q  L  I  A  F  Q  I  L  R  L  K  K  S  N  F  *  </first_frame>
            <second_frame>  R  N  G  Q  R  M  G  F  E  A  G  K  R  R  R  R  L  C  P  E  R  G  N  R  P  P  *  A  V  A  P  A  G  F  R  N  H  R  P  R  K  R  S  L  F  H  A  K  S  S  R  K  L  *  M  *  A  L  L  D  V  T  Q  Q  *  R  E  L  L  G  S  H  S  R  K  T  A  S  D  *  F  S  *  K  S  C  S  *  S  *  G  C  S  C  S  T  S  A  S  *  A  Q  S  Y  S  Q  K  K  C :   *  N  W  *  A  W  L  P  S  D  Q  A  I  *  S  G  N  K  T  K  I  S  F  I  P   : D  *  I  S  *  D  *  R  Q  H  K  A  K  A  P  I  H  V  L  I  R  A   : E  N  P  T  I  *  Q  K  I  S  V  S  S  V  C  C  *  T  I  *  D  H  F  I  *   : G  S  K  H  *  D  *  Q  I  N  S  Q  V  F  L  A  L  G  S  R  F  E  N  V  H   : F  A  V  I  L  Q  D  *  A  T  G  D  *  Q  A  T  N  C  S  Y  R  Q  R  V  V  S  T  R  C  L  I  Q  A  S  T  S  T  T  P  S  S  T  S  T  S  T  T  R  S  S  S  W  S  S  K  S  S  T  Q  R  P  T  I  W  I  N  A  S  T  P  S  P  Y  G  *  R  T  *  T  Y  A  T  R  R  *  L  T  C  P  T  T  S  S  R  W  W  W  S  Y  G  *  F  H  S  R  W  T  H  G  *  T  S  N  D  A  S  T  R  F  S  R  S  T  T  D  A  R  P  R  N  A  P  T  T  S  T  T  Q  H  G  L  M  N  R  S  H  R  T  Y  L  *  L  H  G  T  K  I  R  L  F  V  L  I  F  E  F  V  V  F  V  H  L  N  L  S  K  S  F  M  L  P  E  T  V  V  S  V  R  P  T  R  L  S  L  K  A  F  E  N  V  I  E  Y  H  F  K  S  S  L  L  L  F  R  S  *  D  *  K  K  A  T  S  K </second_frame>
            <third_frame>   E  M  D  R  E  W  G  S  K  P  G  S  G  G  A  A  S  A  Q  N  E  A  I  D  R  R  E  R  L  R  R  L  A  L  E  T  I  D  L  A  K  D  P  Y  F  M  R  N  H  L  G  S  Y  E  C  K  L  C  L  T  L  H  N  N  E  G  N  Y  L  A  H  T  Q  G  K  R  H  Q  T  N  L  A  K  R  A  A  R  E  A  K  D  A  P  A  Q  P  Q  P  H  K  R  K  V  T  L  K  R  N   : V  K  I  G  R  P  G  Y  R  V  T  K  Q  F  D  P  E  T  K  Q  R  S  L  L  F  Q  :  I  E  Y  P  E  I  E  D  N  T  K  P  R  H  R  F  M  S  S  F  E  Q  :  K  I  Q  P  F  D  K  R  Y  Q  F  L  L  F  A  A  E  P  Y  E  I  I  S  F  K  :  V  P  S  T  E  I  D  K  S  T  P  K  F  F  S  H  W  D  P  D  S  K  M  F  T  :  L  Q  L  Y  F  K  T  K  P  L  E  T  N  K  P  P  T  A  P  T  D  N  G  L  S  A  P  G  A  S  S  R  P  L  P  P  P  P  Q  A  P  P  P  P  P  P  Q  G  L  P  P  G  A  P  N  P  P  P  R  G  P  P  S  G  S  M  P  P  P  P  P  L  M  G  N  G  P  R  P  M  P  P  G  G  N  L  P  A  P  P  P  P  P  V  G  G  G  A  M  A  N  F  T  P  G  G  H  M  G  R  P  P  M  M  P  P  Q  G  F  P  G  Q  Q  Q  M  Q  G  Q  G  M  R  P  P  P  P  P  P  N  M  G  *  *  T  E  V  I  E  P  T  F  N  C  M  V  R  K  F  D  F  S  C  *  F  L  S  L  W  F  S  S  I  *  I  F  Q  N  H  L  C  C  Q  K  L  L  Y  L  L  G  R  L  V  Y  L  *  R  L  L  R  M  *  *  N  T  I  L  K  A  A  Y  C  F  S  D  P  K  I  K  K  K  Q  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93475" stop="93151"/>
                    <exon start="92048" stop="91972"/>
                    <exon start="90251" stop="90186"/>
                    <exon start="90025" stop="89951"/>
                    <exon start="89852" stop="89778"/>
                    <exon start="89664" stop="89242"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLKRNVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSFEQKIQPFDKRYQFLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPLETNKPPTAPTDNGLSAPGASSRPLPPPPQAPPPPPPQGLPPGAPNPPPRGPPSGSMPPPPPLMGNGPRPMPPGGNLPAPPPPPVGGGAMANFTPGGHMGRPPMMPPQGFPGQQQMQGQGMRPPPPPPNMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="99170" PGL_stop="104559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99170" e_stop="99498"/>
            <exon e_start="100824" e_stop="100892"/>
            <exon e_start="101816" e_stop="101881"/>
            <exon e_start="102948" e_stop="103069"/>
            <exon e_start="103688" e_stop="103816"/>
            <exon e_start="104225" e_stop="104559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.777" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.896"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99170" e_stop="99498" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99499" i_stop="100823" i_length="1325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100824" e_stop="100892" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100893" i_stop="101815" i_length="923"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101816" e_stop="101881" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="101882" i_stop="102947" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102948" e_stop="103069" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.777" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103070" i_stop="103687" i_length="618"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103688" e_stop="103816" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.934">
            <gDNA_intron_boundary i_start="103817" i_stop="104224" i_length="408"/>
          </intron>
          <exon e_serial="6" e_score="0.896">
            <gDNA_exon_boundary e_start="104225" e_stop="104559" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99170" stop="99498"/>
              <exon start="100824" stop="100892"/>
              <exon start="101816" stop="101881"/>
              <exon start="102948" stop="103069"/>
              <exon start="103688" stop="103816"/>
              <exon start="104225" stop="104413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102980" stop="103069"/>
              <exon start="103688" stop="103816"/>
              <exon start="104225" stop="104559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337660" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAAGTAGTGAATCATGCCAAAAGCTTTCTGAATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGAATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTACGATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGCCCCTACCATTG : GCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAG : CTGGGCAGGAGAGGTTCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTG : TCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGATGTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGA : GAATCCGAGAGAGCTGTGACCAGGGAAGAAGGCATTGCCTTAGCGAAGGAACTTGGAGGTCTATTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGCAAAACTGCTTTGAAGAGCTTGCCTTAAAG : ATAATGGAGGTGCCTAGTCTCCTTGAAGAAGGATCCACTGTAGGGAAGAGAAATATCTTGAAACAGAAACAAGAACAGCAAACACAACAGGGCGGTGGTGGTTGCTGCTCATGATAAAAAAAATTGTGCACTAGATGGTGCACATATCAAATATGTATATGCTGTTTTCTTTTCTTCTTTACTGTTTTTATCTTGCTGCTGCTTTGAAAGTGGTTAGTAGTCTCATGTAAAGTAATTGATCGATGTTGGTCATTGACCAATGTTCTTGTTAATATTTGCCAGATTGCTGTCAAATTGGGTGGTATTTCATAATTTTAATGTGCATTTCATCAGTA</gDNA_template>
            <first_frame> E  K  V  V  N  H  A  K  S  F  L  N  T  F  T  W  P  S  V  F  L  S  V  A  I  V  S  L  L  H  S  F  *  R  E  K  V  Q  S  F  C  V  E  L  E  G  E  R  E  R  V  E  L  R  K  E  E  F  A  D  G  S  I  D  G  D  D  G  A  E  Q  Q  Q  L  R  S  V  I  *  D  L  V  D  R  R  F  W  S  W  K  E  *  L  A  C  *  L  H  F  *  C  R  *  R  S  G  P  Y  H  W :   R  *  F  *  D  Q  D  T  H  C  *  W  E  K  T  E  A  Y  H  L  G  H  S :   W  A  G  E  V  Q  D  T  D  K  L  L  L  Q  R  C  S  R  D  H  S  C :   L  *  C  N  K  K  R  D  L  H  K  P  V  *  C  V  G  K  R  G  G  A  V  *  *  *  S  G  L  C  K  D  A  G  W  K  *  S  *  Q   : R  I  R  E  S  C  D  Q  G  R  R  H  C  L  S  E  G  T  W  R  S  I  S  *  M  *  C  *  N  S  R  K  C  A  K  L  L  *  R  A  C  L  K   : D  N  G  G  A  *  S  P  *  R  R  I  H  C  R  E  E  K  Y  L  E  T  E  T  R  T  A  N  T  T  G  R  W  W  L  L  L  M  I  K  K  I  V  H  *  M  V  H  I  S  N  M  Y  M  L  F  S  F  L  L  Y  C  F  Y  L  A  A  A  L  K  V  V  S  S  L  M  *  S  N  *  S  M  L  V  I  D  Q  C  S  C  *  Y  L  P  D  C  C  Q  I  G  W  Y  F  I  I  L  M  C  I  S  S  V </first_frame>
            <second_frame>  R  K  *  *  I  M  P  K  A  F  *  I  L  L  L  G  P  L  Y  F  S  L  S  P  L  C  H  C  C  I  V  S  R  E  R  K  C  R  V  F  V  L  N  W  K  E  R  E  R  E  L  S  *  G  R  R  S  S  P  M  G  P  S  T  A  T  T  G  Q  S  N  S  S  Y  D  L  S  F  K  I  L  L  I  G  D  S  G  V  G  K  S  S  L  L  V  S  F  I  S  N  A  V  D  D  L  A  P  T  I   : G  V  D  F  K  I  K  T  L  T  V  S  G  K  K  L  K  L  T  I  W  D  T   : A  G  Q  E  R  F  R  T  L  T  S  S  Y  Y  R  G  A  Q  G  I  I  L   : V  Y  D  V  T  R  R  E  T  F  T  N  L  S  D  V  W  A  K  E  V  E  L  Y  S  N  N  Q  D  C  V  K  M  L  V  G  N  K  V  D  R  :  E  S  E  R  A  V  T  R  E  E  G  I  A  L  A  K  E  L  G  G  L  F  L  E  C  S  A  K  T  R  E  N  V  Q  N  C  F  E  E  L  A  L  K  :  I  M  E  V  P  S  L  L  E  E  G  S  T  V  G  K  R  N  I  L  K  Q  K  Q  E  Q  Q  T  Q  Q  G  G  G  G  C  C  S  *  *  K  K  L  C  T  R  W  C  T  Y  Q  I  C  I  C  C  F  L  F  F  F  T  V  F  I  L  L  L  L  *  K  W  L  V  V  S  C  K  V  I  D  R  C  W  S  L  T  N  V  L  V  N  I  C  Q  I  A  V  K  L  G  G  I  S  *  F  *  C  A  F  H  Q   </second_frame>
            <third_frame>   E  S  S  E  S  C  Q  K  L  S  E  Y  F  Y  L  A  L  C  I  S  L  C  R  H  C  V  T  V  A  *  F  L  E  R  E  S  A  E  F  L  C  *  I  G  R  R  E  R  E  S  *  V  E  E  G  G  V  R  R  W  V  H  R  R  R  R  R  G  R  A  T  A  V  T  I  C  H  L  R  S  C  *  S  E  I  L  E  L  E  R  V  A  C  L  L  A  S  F  L  M  P  L  T  I  W  P  L  P  L  :  A  L  I  L  R  S  R  H  S  L  L  V  G  K  N  *  S  L  P  F  G  T  Q  :  L  G  R  R  G  S  G  H  *  Q  A  P  T  T  E  V  L  K  G  S  F  L  :  S  M  M  *  Q  E  E  R  P  S  Q  T  C  L  M  C  G  Q  K  R  W  S  C  I  V  I  I  R  I  V  *  R  C  W  L  E  I  K  L  T  E :   N  P  R  E  L  *  P  G  K  K  A  L  P  *  R  R  N  L  E  V  Y  F  L  N  V  V  L  K  L  E  K  M  C  K  T  A  L  K  S  L  P  *  R :   *  W  R  C  L  V  S  L  K  K  D  P  L  *  G  R  E  I  S  *  N  R  N  K  N  S  K  H  N  R  A  V  V  V  A  A  H  D  K  K  N  C  A  L  D  G  A  H  I  K  Y  V  Y  A  V  F  F  S  S  L  L  F  L  S  C  C  C  F  E  S  G  *  *  S  H  V  K  *  L  I  D  V  G  H  *  P  M  F  L  L  I  F  A  R  L  L  S  N  W  V  V  F  H  N  F  N  V  H  F  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99330" stop="99498"/>
                    <exon start="100824" stop="100892"/>
                    <exon start="101816" stop="101881"/>
                    <exon start="102948" stop="103069"/>
                    <exon start="103688" stop="103816"/>
                    <exon start="104225" stop="104338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRSSPMGPSTATTGQSNSSYDLSFKILLIGDSGVGKSSLLVSFISNAVDDLAPTIGVDFKIKTLTVSGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSNNQDCVKMLVGNKVDRESERAVTREEGIALAKELGGLFLECSAKTRENVQNCFEELALKIMEVPSLLEEGSTVGKRNILKQKQEQQTQQGGGGCCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="106033" PGL_stop="104782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106033" e_stop="105947"/>
            <exon e_start="105817" e_stop="105739"/>
            <exon e_start="105494" e_stop="105400"/>
            <exon e_start="105280" e_stop="105185"/>
            <exon e_start="105090" e_stop="104782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106033" e_stop="105947" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105946" i_stop="105818" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105817" e_stop="105739" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.986">
            <gDNA_intron_boundary i_start="105738" i_stop="105495" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105494" e_stop="105400" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="105399" i_stop="105281" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105280" e_stop="105185" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105184" i_stop="105091" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105090" e_stop="104782" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106033" stop="105947"/>
              <exon start="105817" stop="105739"/>
              <exon start="105494" stop="105400"/>
              <exon start="105280" stop="105185"/>
              <exon start="105090" stop="104782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATGGAAACATTGATGAACCTCTAGAAGATGGGGACACTGCTCTTCATATTACTTGTCTGTATGGCCATCTGGCATGTGTGGAG : CTACTGTTAGAGAGAGGAGCTTCTGTGGAGGCTAAGGATGAAGATGGAGCAATTCCATTGCATGATGCTTGTGCTGGAG : GATACACAGAAATAGCCCGTCTGCTAATCAACAATGCACCTGACCCTGAATGCGTGAAAAGGATGCTGGACACCTTTGATGAAGAAGGTGATGCG : CCTCTCCATCATGCCGCCAGAGGTGAACATTTAGATGTGATCAGATTATTGATAGCTTCAGGGGCTTCTGCTTGTAGGAACAATTTATTAGGAAGG : ACCCCATCTGAGCTTGTTGAGCCTGAAAGTGAAGCTTGCATAATCTTAGACGAAGCTATAAGTGCTGAAATCGGCCGTCCCTATAGGTCTACGTAAAGAAAATTTGGACGCTCGGCTATTGTCGATATGTTTCCCCTTGTTCTGTAGGTACTAGTGTTATATTAGAAACTCGGATATTATGCTTGAATGTTAAAATACTCTTTATATAGTGAGATTGCACATTGCAGTATGAGAAATACTCATCTTTTTTGAAGCGACTGTTAAATGATTCATCAACTAGAATTATAGAATATGGAAACTTTATTTGTT</gDNA_template>
            <first_frame> F  N  G  N  I  D  E  P  L  E  D  G  D  T  A  L  H  I  T  C  L  Y  G  H  L  A  C  V  E  :  L  L  L  E  R  G  A  S  V  E  A  K  D  E  D  G  A  I  P  L  H  D  A  C  A  G   : G  Y  T  E  I  A  R  L  L  I  N  N  A  P  D  P  E  C  V  K  R  M  L  D  T  F  D  E  E  G  D  A  :  P  L  H  H  A  A  R  G  E  H  L  D  V  I  R  L  L  I  A  S  G  A  S  A  C  R  N  N  L  L  G  R  :  T  P  S  E  L  V  E  P  E  S  E  A  C  I  I  L  D  E  A  I  S  A  E  I  G  R  P  Y  R  S  T  *  R  K  F  G  R  S  A  I  V  D  M  F  P  L  V  L  *  V  L  V  L  Y  *  K  L  G  Y  Y  A  *  M  L  K  Y  S  L  Y  S  E  I  A  H  C  S  M  R  N  T  H  L  F  *  S  D  C  *  M  I  H  Q  L  E  L  *  N  M  E  T  L  F  V </first_frame>
            <second_frame>  L  M  E  T  L  M  N  L  *  K  M  G  T  L  L  F  I  L  L  V  C  M  A  I  W  H  V  W  S :   Y  C  *  R  E  E  L  L  W  R  L  R  M  K  M  E  Q  F  H  C  M  M  L  V  L  E  :  D  T  Q  K  *  P  V  C  *  S  T  M  H  L  T  L  N  A  *  K  G  C  W  T  P  L  M  K  K  V  M  R :   L  S  I  M  P  P  E  V  N  I  *  M  *  S  D  Y  *  *  L  Q  G  L  L  L  V  G  T  I  Y  *  E  G :   P  H  L  S  L  L  S  L  K  V  K  L  A  *  S  *  T  K  L  *  V  L  K  S  A  V  P  I  G  L  R  K  E  N  L  D  A  R  L  L  S  I  C  F  P  L  F  C  R  Y  *  C  Y  I  R  N  S  D  I  M  L  E  C  *  N  T  L  Y  I  V  R  L  H  I  A  V  *  E  I  L  I  F  F  E  A  T  V  K  *  F  I  N  *  N  Y  R  I  W  K  L  Y  L   </second_frame>
            <third_frame>   *  W  K  H  *  *  T  S  R  R  W  G  H  C  S  S  Y  Y  L  S  V  W  P  S  G  M  C  G   : A  T  V  R  E  R  S  F  C  G  G  *  G  *  R  W  S  N  S  I  A  *  C  L  C  W  R :   I  H  R  N  S  P  S  A  N  Q  Q  C  T  *  P  *  M  R  E  K  D  A  G  H  L  *  *  R  R  *  C   : A  S  P  S  C  R  Q  R  *  T  F  R  C  D  Q  I  I  D  S  F  R  G  F  C  L  *  E  Q  F  I  R  K   : D  P  I  *  A  C  *  A  *  K  *  S  L  H  N  L  R  R  S  Y  K  C  *  N  R  P  S  L  *  V  Y  V  K  K  I  W  T  L  G  Y  C  R  Y  V  S  P  C  S  V  G  T  S  V  I  L  E  T  R  I  L  C  L  N  V  K  I  L  F  I  *  *  D  C  T  L  Q  Y  E  K  Y  S  S  F  L  K  R  L  L  N  D  S  S  T  R  I  I  E  Y  G  N  F  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0203J14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106033" stop="105947"/>
                    <exon start="105817" stop="105739"/>
                    <exon start="105494" stop="105400"/>
                    <exon start="105280" stop="105185"/>
                    <exon start="105090" stop="104995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGNIDEPLEDGDTALHITCLYGHLACVELLLERGASVEAKDEDGAIPLHDACAGGYTEIARLLINNAPDPECVKRMLDTFDEEGDAPLHHAARGEHLDVIRLLIASGASACRNNLLGRTPSELVEPESEACIILDEAISAEIGRPYRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 142144 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 17768 bytes was the average size of a spliced alignment
$ 12424 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2070 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:36:45
-->
